dya_51

AATGATTTCAGAGGACCTGGGAAAGAAGTCATCTTGGTATTATGGCAACAAGTTTCCGGGACTTCGTACTGTATGACAGACTATATATACAATACGAAGCCTCTGAAATTTTCTGCGCTCAAGTACCAAAAACTACCAGCAAACCAACGAAACTGGAGAACTA *********************************((((((...(((..(((((((.(((.(((((((.((((((..........)))))).))))))).))).)))))))..))).....))))))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M026 head	V120 male body	M043 female body	V058 head	M056 embryo	V052 head	V046 embryo
..........................................................................................AATACGAAGCCTCTGAAATTTT...................................................	22	0	1	129.00	129	112	15	1	0	1	0	0
..................................................AGTTTCCGGGACTTCGTACTGT...........................................................................................	22	0	1	84.00	84	60	18	3	0	1	1	1
...........................................................................................ATACGAAGCCTCTGAAATTTTCT.................................................	23	0	1	30.00	30	30	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTG............................................................................................	21	0	1	28.00	28	7	20	1	0	0	0	0
..........................................................................................AATACGAAGCCTCTGAAATTT....................................................	21	0	1	23.00	23	21	1	1	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTGG...........................................................................................	22	1	1	18.00	18	18	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTGC...........................................................................................	22	1	1	11.00	11	11	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACT.............................................................................................	20	0	1	8.00	8	0	6	0	1	0	1	0
..................................................AGTTTCCGGGACTTCGTAC..............................................................................................	19	0	1	6.00	6	6	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTGTT..........................................................................................	23	1	1	5.00	5	5	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTGTA..........................................................................................	23	0	1	5.00	5	5	0	0	0	0	0	0
...........................................................................................ATACGAAGCCTCTGAAATTTTCTG................................................	24	0	1	5.00	5	5	0	0	0	0	0	0
..........................................................................................AATACGAAGCCTCTGAAATT.....................................................	20	0	1	3.00	3	3	0	0	0	0	0	0
............................................................................................TACGAAGCCTCTGAAATTTTCT.................................................	22	0	1	3.00	3	3	0	0	0	0	0	0
..................................................ATTTTCCGGGACTTCGTACTGT...........................................................................................	22	1	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................ATACGAAGCCTCTGAAATTTTC..................................................	22	0	1	2.00	2	1	1	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTGTTT.........................................................................................	24	1	1	2.00	2	2	0	0	0	0	0	0
............................................................................................TACGAAGCCTCTGAAATTTTCTG................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
.......................................................CCGGGACTTCGTACTGTA..........................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................ATACGAAGCCTCTGAAATTTTCC.................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................AATACGGAGCCTCTGAAATTT....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
......................................................TCCGGGACTTCGTACTGTATGA.......................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................AATACGAAGCATCTGAAATTTT...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................AATACGAAGCCTTTGGAATTTT...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
...................................................GTTTCCGGGACTTCGTACTGTT..........................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTCCTG............................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0
..................................................AGGTTCCGGGGCTTCGTGCTG............................................................................................	21	3	1	1.00	1	0	0	0	1	0	0	0
..................................................AGTTTCCGGGACTTCGTGCTGT...........................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..................................................AGCTTCCGGGACTTCGTATTGT...........................................................................................	22	2	1	1.00	1	0	0	0	0	1	0	0
..................................................AGTCTCCGGGACTTCGTACTGC...........................................................................................	22	2	1	1.00	1	1	0	0	0	0	0	0
..................................................AGTTTCCGGGCCTTCGTACTG............................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................AATACGAAGCCTCTGAGATTTT...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..................................................AGTTTCCGGGATATCGTACTGT...........................................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
..................................................AGTTTCCGGGACTTCGTACTT............................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................ATACGAAGCCTCTGAAATTTTCTGC...............................................	25	0	1	1.00	1	1	0	0	0	0	0	0
................................................CAAGTTTCCGGGACTTCGTACCG............................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................ATACGAAGCCTCTGAAATTTT...................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................TACGAAGCCTCTGAAATTTTC..................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................CAATACGAAGCCTCTGAAATTTT...................................................	23	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................CTCAAGCACCAAAGACTACT..........................	20	3	20	0.05	1	0	0	1	0	0	0	0

TTACTAAAGTCTCCTGGACCCTTTCTTCAGTAGAACCATAATACCGTTGTTCAAAGGCCCTGAAGCATGACATACTGTCTGATATATATGTTATGCTTCGGAGACTTTAAAAGACGCGAGTTCATGGTTTTTGATGGTCGTTTGGTTGCTTTGACCTCTTGAT **********************************((((((...(((..(((((((.(((.(((((((.((((((..........)))))).))))))).))).)))))))..))).....))))))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V120 male body	V058 head	V052 head
...................................................................................................GGAGAGTTTAAAGGACGCG.............................................	19	2	2	21.00	42	23	15	3	1
...................................................................................................GGAGAGTTTAAAGGACGC..............................................	18	2	7	3.29	23	19	1	1	2
....................................................................................................GAGAGTTTAAAGGACGCG.............................................	18	2	4	3.00	12	8	2	2	0
..................................................................................................AGGAGAGTTTAAAAGACGCGG............................................	21	3	4	0.25	1	1	0	0	0
...................................................................................................GGAGAGTTTAAAAGATGCGGG...........................................	21	3	7	0.14	1	1	0	0	0
...................................................................................................GGAGATTTTAAAGGACGCGG............................................	20	3	9	0.11	1	1	0	0	0
...................................................................................................GGAGAGTTTAAAGGACG...............................................	17	2	20	0.10	2	0	0	2	0
...................................................................................................GGAGAGTTTAAAAGATGCGG............................................	20	3	10	0.10	1	1	0	0	0

Species	Coordinate	ID	Alignment
droYak3	X:11886112-11886274 -	dya_51	AATGATT--T-----------C----AGAGGACC----T----------------------------------------------------------GGGAAAGAAGTCATCTTGGTATTATGGCAACAAGTTTCCGGGACTTCGTACTGTATGAC-AG-------------------A------CTATATATACAATACGAAGCCTCT-------------------GAAATTTTCTGCGCTCAAGTACCAAAAACTACCAGCA-----A---------ACCAACGAAACTGGAGAACTA
droEre2	scaffold_4690:9688606-9688739 +		AATGACT--T-----------T----AGAAGATC----T----------------------------------------------------------TGAAAAAGAGTCAGCTTGGTATTAAGGCAACAAGTTTCAGGGACTTCGCACTGTATGAC-AA-------------------A------CTAT----------------------------------------AAATTTTGTGCACTCAAGTACCAAAAAGTACCAA----------------------CGCAACCGGACAACCA
droSec2	scaffold_8:1734593-1734772 +	dse_192	AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGAATAGAAGACGTCTTGGTATTATGGCAACAAGTTTCCAGGACATCGAGCTGTGTGAC-GG------------CACTAGAG------TACTAAATATATTGCACATGTTCATACATGTTCATACATGTAAAACATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACATCGAAACGGGAGAAC--
droSim2	x:18341723-18341892 +	dsi_267	AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGAATAGAAGACGTCTTGGTATTATGGCAACAAGTTTCCAGGACATCGAGCTGTGTGAC-GG------------CACTGGAG------TACTAAATATATTGCACATGTTCATACATGT----------AAATCATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACATCGAAACGGGAGAAC--
dm3	chrX:19452345-19452509 +	dme-mir-4966-1	AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGA---------ATCTTGGTATTCGTGCAAAAAGTTTCCAGGACATTGAGCTGTGTGAC-AACAAACTTGTCGGCACTGGAG------TACTAAATATATTGCACATGTTCATGCATGTT----------CAACATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACAACGAAAC----------
droEug1	scf7180000409230:879958-880127 -		AATGAAT--G-----------C----ATACTA---------------AT-ACCCT------------------------------------------GATAGAGGCGACATCTTGGTATTATCGCAATAAGTTCCTGGGATTTCGCACTGTATTAC-GA-------------------T------TTTTACATACAATACGAAAGCTCA-------------------GAAACTAACTGCAATTAACTACCGTAAACTACGGATGAGAAC---------GAGTTTC--AACCCGAGTTTCA
droBia1	scf7180000302069:1151337-1151511 -		ACTGTTT--G-----------T----A---TGCATCCATA-CACGTGGTTATTT-------------------------------------------CCACATGAAGACATCTTGGTATTATCGCAACAAGTTTCCGGGATTTTGTATTGTATGACTAG-------------------A------TTCTATATACAATACGAAACCTCA-------------------GAAATTTTCTGCAGTTAACTACCATAAATCGCCGAGA-GAAC-CGA------AG----------GCCCAACTG
droTak1	scf7180000415169:845108-845290 -		AATGCGT--ATGCG-------T-------ATGCA----TA-------GC-ACACAT----------------------------------A------TGAGAGGACGACACCTTGGTATTATCGCAACAAGTTTCCGGGATTTCGTACTGTATGCT-GA-------------------A------TTCTATATACAATACGAAAGCTCA-------------------GAAATTTTCTGCAGTTAACTACCATTAACTACTTACT-----ACGAAGGATGGATTATGGAACTAGGGAACTT
droEle1	scf7180000490751:1118478-1118626 +		AATGTAT--C---G-------T----A---TATA-------------GT-GCTCG-------------------------------------------AACACAACAACTCCTTGGTATTATCGCAGCAAGTTTCCGGGATTTCGTACTGTATGAC-AA-------------------A------TTCTATATACAATACGAAACCTTA-------------------GAAATTTTCTGAAGTTAGCTACCATACACTACCAATA-------------------------------AACCA
droRho1	scf7180000761121:190365-190579 -		AATTTAT--A-----------T----AAAACATA----TAGAACATACTCATTCCTACGCTGTCACT---ACATCGGGGAAATAAGACCATTC-----GGGCCGGAGACATCTTGGTATTATCGCAGCAAGTTTCCGGGATTTCGTACTGTATGAC-AA-------------------A------TTCTATATACAATACGAAACCTTA-------------------GAAATTTTCTGCAGTTATCTACCATTAACTACCAGTT-----T-AA-----ACACTTAATTAC-AACAAATCA
droFic1	scf7180000454073:1733535-1733745 +		AATCTAC--T----------ATATTA-------------------TATTCACTCGTATTCAAGAATCTTAAAAAGAAAGAAAAGAAACCAGCGAAGTCCCGAAGCTGCAATCTCGGTATTATCGCAGCAAGTTTCCGGGACTTCGTACTGTATGAA-GA-------------------A------TTCTATATACAATACGAAACCTCA-------------------GAAATTTATTGCAATGAACCACCTTTAACTATTGATT-----T---------CATTTCGGAATAAAAAAGTTA
droKik1	scf7180000302517:1183433-1183562 +		TGTGCTT--A-----------C----------------------------------------------------------------------------------------CCCTGGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTAATGTATGGTTAT-------------------A------TTTGAAATACAGTACGAGACATCA-------------------GAAATTTTCGGCAGTTAGCTACCGTAAACAACCAAAA-------------------------ATGGAGCAAGG
droAna3	scaffold_13417:2468098-2468193 -		---------------------------------------------------------------------------------------------------------------CCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTACTGTATGAA-GT-------------------T------TTCTATATACAATTCGAAAACTCA-------------------GAAACTTCCTGCCGTGAGCTACCA-------------------------------------------------
droBip1	scf7180000395874:40419-40557 -		AAGTAGCTCA--CGCCCGCTACATCC-------------------TATT-----------------------------------------GCG----GGGTGCGGGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTAGTGTATGAA-GT-------------------T------TTATAAATACAATTCGAAAACTCA-------------------GAAACTTTCTGCCTTGAAGTAC---------------------------------------------------
droWil2	scf2_1100000004909:7956428-7956533 +		----------------------------------------------------------------------------------------------------------------TTGGTATTATCGCAGCAAGTTTCCGGGATATCGTACTGTATTTC-TA-------------------A---ACATTTCATATACAATACGAAACCTCA-------------------GAAATTTGCTGCGGTTAGTTACCGTTAACAAC-----------------------------------------
droGri2	scaffold_15081:2044894-2044998 -	dgr_10	---------------------------------------------------------------------------------------------------------------CCTGGTATTGCTGCTGCAAATTTCCGCGGTGTCGTATTGTATTAT-CA------------AAATGGTATAC---TCTGAACCACAATACGATTCCTCA-------------------GAAATTCGCTGCTGTAAGTTACC--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

AATGATT--T-----------C----AGAGGACC----T----------------------------------------------------------GGGAAAGAAGTCATCTTGGTATTATGGCAACAAGTTTCCGGGACTTCGTACTGTATGAC-AG-------------------A------CTATATATACAATACGAAGCCTCT-------------------GAAATTTTCTGCGCTCAAGTACCAAAAACTACCAGCA-----A---------ACCAACGAAACTGGAGAACTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................AATACGAAGCCTCT-------------------GAAATTTT.................................................................	22	1	129.00	129	112	1	1	0	0	0	15	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTGT......................................................................................................................................................	22	1	84.00	84	60	3	1	1	1	0	18	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTTCT...............................................................	23	1	30.00	30	30	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTG.......................................................................................................................................................	21	1	28.00	28	7	1	0	0	0	0	20	0	0	0	0
...................................................................................................................................................................................................AATACGAAGCCTCT-------------------GAAATTT..................................................................	21	1	23.00	23	21	1	0	0	0	0	1	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTGG......................................................................................................................................................	22	1	18.00	18	18	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTGC......................................................................................................................................................	22	1	11.00	11	11	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACT........................................................................................................................................................	20	1	8.00	8	0	0	0	0	1	1	6	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTAC.........................................................................................................................................................	19	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTGTT.....................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTGTA.....................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTTCTG..............................................................	24	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AATACGAAGCCTCT-------------------GAAATT...................................................................	20	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TACGAAGCCTCT-------------------GAAATTTTCT...............................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTTC................................................................	22	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................TACGAAGCCTCT-------------------GAAATTTTCTG..............................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CCGGGACTTCGTACTGTA.....................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTTCC...............................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TCCGGGACTTCGTACTGTATGA..................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTTTCCGGGACTTCGTACTGTT.....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGACTTCGTACTT.......................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTTCTGC.............................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATACGAAGCCTCT-------------------GAAATTTT.................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TACGAAGCCTCT-------------------GAAATTTTC................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAATACGAAGCCTCT-------------------GAAATTTT.................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

AATGACT--T-----------T----AGAAGATC----T----------------------------------------------------------TGAAAAAGAGTCAGCTTGGTATTAAGGCAACAAGTTTCAGGGACTTCGCACTGTATGAC-AA-------------------A------CTAT----------------------------------------AAATTTTGTGCACTCAAGTACCAAAAAGTACCAA----------------------CGCAACCGGACAACCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGAATAGAAGACGTCTTGGTATTATGGCAACAAGTTTCCAGGACATCGAGCTGTGTGAC-GG------------CACTAGAG------TACTAAATATATTGCACATGTTCATACATGTTCATACATGTAAAACATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACATCGAAACGGGAGAAC--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................TACTAAATATATTGCACATGTT..............................................................................................	22	2	36.00	72	4	48	6	14
...............................................................................................................................................................................................................................TGTAAAACATATTTAGCACTC.........................................................	21	1	26.00	26	0	23	1	2
...............................................................................................................................................................................................................................TGTAAAACATATTTAGCACTCA........................................................	22	1	20.00	20	1	14	3	2
.........................................................................................................................................................................................TACTAAATATATTGCACATGT...............................................................................................	21	2	2.00	4	0	4	0	0
...............................................................................................................................................................................................................................TGTAAAACATATTTAGCACTCT........................................................	22	1	2.00	2	0	2	0	0
..........................................................................................................................................................................................ACTAAATATATTGCACATGTT..............................................................................................	21	2	1.50	3	0	2	0	1
................................................................................................................................................................................................................................GTAAAACATATTTAGCACTCA........................................................	21	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................TGTAAAACATATTTAGCACT..........................................................	20	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................CTAAATATATTGCACATGTT..............................................................................................	20	2	0.50	1	0	1	0	0
..........................................................................................................................................................................................ACTAAATATATTGCACATGT...............................................................................................	20	2	0.50	1	0	1	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTA.............................................................................................	23	2	0.50	1	1	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATG................................................................................................	20	2	0.50	1	0	1	0	0

droSim2

AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGAATAGAAGACGTCTTGGTATTATGGCAACAAGTTTCCAGGACATCGAGCTGTGTGAC-GG------------CACTGGAG------TACTAAATATATTGCACATGTTCATACATGT----------AAATCATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACATCGAAACGGGAGAAC--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................TACTAAATATATTGCACATGTT..............................................................................................	22	4	79.75	319	0	11	0	1	0	0	12	13	7	3	0	1	0	271	0	0	0
.....................................................................................................................................................................................................................TGT----------AAATCATATTTAGCACTCA........................................................	22	3	16.67	50	0	2	0	0	0	0	0	0	0	0	0	0	0	48	0	0	0
.....................................................................................................................................................................................................................TGT----------AAATCATATTTAGCACTC.........................................................	21	3	8.67	26	0	16	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGT...............................................................................................	21	4	4.00	16	0	1	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATG................................................................................................	20	4	2.75	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0
.................................................................................................................................................................................AG------TACTAAATATATTGCACATG................................................................................................	22	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTT.............................................................................................	23	4	2.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTA.............................................................................................	23	4	2.25	9	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	0	0
..................................................................................................................................................................................G------TACTAAATATATTGCACATGT...............................................................................................	22	4	2.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
..................................................................................................................................................................................G------TACTAAATATATTGCACATG................................................................................................	21	4	1.50	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTC.............................................................................................	23	4	1.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTCA............................................................................................	24	4	1.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.......................................................................................................................................................................................................................T----------AAATCATATTTAGCACTCAAGT.....................................................	23	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTA..............................................................................................	22	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................................................................................CATGT----------AAATCATATTTAGCACT..........................................................	22	3	0.67	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TGT----------AAATCATATTTAGCACTCAA.......................................................	23	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTCAT...........................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGCAG.............................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACAA.................................................................................................	19	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................T----------AAATCATATTTAGCACTCAAA......................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................ATGT----------AAATCATATTTAGCACTCAAA......................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................ATGT----------AAATCATATTTAGCACTCA........................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................T----------AAATCATATTTAGCACTCAAG......................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTCATA..........................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................CTAAATATATTGCACATGTT..............................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................ATACATGT----------AAATCATATT.................................................................	18	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGTTTT............................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGG...............................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

AATGATT--T-----------C----AGAATATC----T----------------------------------------------------------AGA---------ATCTTGGTATTCGTGCAAAAAGTTTCCAGGACATTGAGCTGTGTGAC-AACAAACTTGTCGGCACTGGAG------TACTAAATATATTGCACATGTTCATGCATGTT----------CAACATATTTAGCACTCAAGTACCGAAAAAT---------------------GAACAACGAAAC----------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................TACTAAATATATTGCACATGTT..............................................................................................	22	2	8267.00	16534	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	104	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	1	0	0	11	0	0	22	0	0	0	1	0	1	0	2	0	0	1	3	0	16	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	2	0	0	0	10	15	3	0	1	0	7	9	0	0	0	0	0	4	273	5	664	0	0	0	0	264	0	272	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	18	0	0	1	1	2	5	12	0	0	6	25	3	3	10	0	0	0	0	0	0	0	0	0	1	1	0	0	29	0	0	15	0	5	6	1	6	0	0	0	1	0	0	0	32	1	4343	2	1	7	1	2	0	3	7	0	0	0	1	0	3	0	32	1	1	3	1	2	1	0	19	3	25	0	4	0	0	1	0	0	17	0	13	6	0	0	0	0	0	4	1	3248	3	0	0	1	2	0	13	0	2	0	6	0	1	1	0	0	6	6754	3	78	0
.....................................................................................................................................................................................................................TGTT----------CAACATATTTAGCACTCA........................................................	22	2	1704.50	3409	0	0	0	0	0	2	0	0	0	0	1	11	0	0	0	0	0	0	0	0	0	0	0	0	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	1	0	0	2	4	1	6	0	0	94	0	1	83	0	0	1	8	0	10	0	0	1	5	1	5	0	87	8	2	1	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	3	1	0	0	0	1	0	0	0	0	0	0	0	87	3	127	0	0	0	0	93	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	2	4	1	0	5	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	6	0	1	4	0	0	0	0	0	0	0	0	0	4	0	769	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	3	1	8	0	1	1	1	0	0	0	4	0	0	0	0	0	0	0	0	0	1	347	0	0	0	0	0	0	2	0	0	0	5	0	0	1	0	0	1	1369	0	21	0
.........................................................................................................................................................................................TACTAAATATATTGCACATGT...............................................................................................	21	2	655.00	1310	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	25	0	0	0	0	11	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	311	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	1	0	346	0	0	0	0	0	0	9	0	0	0	2	0	0	0	0	0	0	561	0	3	0
.....................................................................................................................................................................................................................TGTT----------CAACATATTTAGCACTC.........................................................	21	2	401.00	802	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	34	0	0	0	0	27	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	1	0	3	2	0	0	0	0	0	0	0	0	0	0	298	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	52	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	319	0	4	0
...................................................................................................................................................................................................................CATGTT----------CAACATATTTAGCACT..........................................................	22	2	213.50	427	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	1	11	0	9	0	0	0	0	9	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	77	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	3	0	1	1	0	0	0	0	0	1	0	217	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	44	0	4	0
.....................................................................................................................................................................................................................TGTT----------CAACATATTTAGCACT..........................................................	20	2	114.50	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	111	0	0	0
.................................................................................................................................................................................AG------TACTAAATATATTGCACATG................................................................................................	22	2	97.00	194	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	7	0	0	8	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	12	3	0	1	0	0	6	0	0	0	0	0	0	4	0	10	0	0	0	0	9	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33	0	1	0
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.........................................................................................................................................................................................TACTAAATATATTGCACATGTA..............................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................................................ACTTGTCGGCACTGGAG------T...................................................................................................................	18	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGTT----------CAACATATTTAGCACTCAATC.....................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AC-AACAAACTTGTCGGCACTGGAG------....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CATGTT----------CAACATATTTAGC.............................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................AACATATTTAGCACTCAAGT.....................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGTT----------CAACATATTTAGCACTCAA.......................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

AATGAAT--G-----------C----ATACTA---------------AT-ACCCT------------------------------------------GATAGAGGCGACATCTTGGTATTATCGCAATAAGTTCCTGGGATTTCGCACTGTATTAC-GA-------------------T------TTTTACATACAATACGAAAGCTCA-------------------GAAACTAACTGCAATTAACTACCGTAAACTACGGATGAGAAC---------GAGTTTC--AACCCGAGTTTCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTGTTT--G-----------T----A---TGCATCCATA-CACGTGGTTATTT-------------------------------------------CCACATGAAGACATCTTGGTATTATCGCAACAAGTTTCCGGGATTTTGTATTGTATGACTAG-------------------A------TTCTATATACAATACGAAACCTCA-------------------GAAATTTTCTGCAGTTAACTACCATAAATCGCCGAGA-GAAC-CGA------AG----------GCCCAACTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATGCGT--ATGCG-------T-------ATGCA----TA-------GC-ACACAT----------------------------------A------TGAGAGGACGACACCTTGGTATTATCGCAACAAGTTTCCGGGATTTCGTACTGTATGCT-GA-------------------A------TTCTATATACAATACGAAAGCTCA-------------------GAAATTTTCTGCAGTTAACTACCATTAACTACTTACT-----ACGAAGGATGGATTATGGAACTAGGGAACTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATGTAT--C---G-------T----A---TATA-------------GT-GCTCG-------------------------------------------AACACAACAACTCCTTGGTATTATCGCAGCAAGTTTCCGGGATTTCGTACTGTATGAC-AA-------------------A------TTCTATATACAATACGAAACCTTA-------------------GAAATTTTCTGAAGTTAGCTACCATACACTACCAATA-------------------------------AACCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATTTAT--A-----------T----AAAACATA----TAGAACATACTCATTCCTACGCTGTCACT---ACATCGGGGAAATAAGACCATTC-----GGGCCGGAGACATCTTGGTATTATCGCAGCAAGTTTCCGGGATTTCGTACTGTATGAC-AA-------------------A------TTCTATATACAATACGAAACCTTA-------------------GAAATTTTCTGCAGTTATCTACCATTAACTACCAGTT-----T-AA-----ACACTTAATTAC-AACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AATCTAC--T----------ATATTA-------------------TATTCACTCGTATTCAAGAATCTTAAAAAGAAAGAAAAGAAACCAGCGAAGTCCCGAAGCTGCAATCTCGGTATTATCGCAGCAAGTTTCCGGGACTTCGTACTGTATGAA-GA-------------------A------TTCTATATACAATACGAAACCTCA-------------------GAAATTTATTGCAATGAACCACCTTTAACTATTGATT-----T---------CATTTCGGAATAAAAAAGTTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTGCTT--A-----------C----------------------------------------------------------------------------------------CCCTGGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTAATGTATGGTTAT-------------------A------TTTGAAATACAGTACGAGACATCA-------------------GAAATTTTCGGCAGTTAGCTACCGTAAACAACCAAAA-------------------------ATGGAGCAAGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

---------------------------------------------------------------------------------------------------------------CCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTACTGTATGAA-GT-------------------T------TTCTATATACAATTCGAAAACTCA-------------------GAAACTTCCTGCCGTGAGCTACCA-------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................ATTCGAAAACTCA-------------------GAAACTTCCT...............................................................	23	1	46.00	46	3	1	0	5	8	29
...................................................................................................................................................................................................AATTCGAAAACTCA-------------------GAAACTTC.................................................................	22	1	20.00	20	4	1	0	4	4	7
.................................................................................................................................AGTTTCCGGGATCTCGTACTG.......................................................................................................................................................	21	1	17.00	17	3	0	0	0	13	1
.................................................................................................................................AGTTTCCGGGATCTCGTACTGT......................................................................................................................................................	22	1	14.00	14	5	0	0	1	8	0
.................................................................................................................................AGTTTCCGGGATCTCGTACTGTA.....................................................................................................................................................	23	1	11.00	11	4	0	0	2	4	1
..................................................................................................................................................................................................CAATTCGAAAACTCA-------------------GAAACTTC.................................................................	23	1	10.00	10	0	1	0	4	2	3
.....................................................................................................................................................................................................TTCGAAAACTCA-------------------GAAACTTCCT...............................................................	22	1	6.00	6	0	0	0	1	1	4
..................................................................................................................................................................................................CAATTCGAAAACTCA-------------------GAAACTT..................................................................	22	1	4.00	4	0	0	0	0	2	2
.................................................................................................................................AGTTTCCGGGATCTCGTACT........................................................................................................................................................	20	1	3.00	3	0	0	0	0	1	2
...................................................................................................................................................................................................AATTCGAAAACTCA-------------------GAAACTTCC................................................................	23	1	3.00	3	1	0	0	0	1	1
....................................................................................................................................................................................................ATTCGAAAACTCA-------------------GAAACTTCCTT..............................................................	24	1	2.00	2	1	0	0	0	0	1
....................................................................................................................................................................................................ATTCGAAAACTCA-------------------GAAACTTC.................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................CGAGTTTCCGGGATCTCGTACTGTATGA..................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TTTCCGGGATCTCGTACTGTAT....................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................ATTCGAAAACTCA-------------------GAAACTTCCC...............................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................AGTTTCCGGGATCTCGTACTT.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................AATTCGAAAACTCA-------------------GAAACTTT.................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................AGTTTCCGGGATCTCGTACTGTAAA...................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................AATTCGAAAACTCA-------------------GAAACTTCA................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATTCGAAAACTCA-------------------GAAACTTCC................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................GAGTTTCCGGGATCTCGTACT........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................AGTTTCCGGGATCTCGTACTA.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................GTTTCCGGGATCTCGTACTG.......................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
................................................................................................................................GAGTTTCCGGGATCTCGTACTG.......................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................AGTTTCCGGGATCTCGTACTGTAA....................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................TTTCCGGGATCTCGTACTGTATG...................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................CGGGATCTCGTACTGTATGAA-G...............................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................ATATACAATTCGAAAACTCA-------------------GA.......................................................................	22	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................GTTTCCGGGATCTCGTACTGTT.....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................CGAGTTTCCGGGATCTCGTAC.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................GAGTTTCCGGGATCTCGTACTGA......................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0

droBip1

AAGTAGCTCA--CGCCCGCTACATCC-------------------TATT-----------------------------------------GCG----GGGTGCGGGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTAGTGTATGAA-GT-------------------T------TTATAAATACAATTCGAAAACTCA-------------------GAAACTTTCTGCCTTGAAGTAC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droWil2

----------------------------------------------------------------------------------------------------------------TTGGTATTATCGCAGCAAGTTTCCGGGATATCGTACTGTATTTC-TA-------------------A---ACATTTCATATACAATACGAAACCTCA-------------------GAAATTTGCTGCGGTTAGTTACCGTTAACAAC-----------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................AGTTTCCGGGATATCGTACTGTA.....................................................................................................................................................	23	1	290.00	290	236	0	53	1	0
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTGCT...............................................................	23	1	173.00	173	10	1	81	15	66
...................................................................................................................................TTTCCGGGATATCGTACTGTAT....................................................................................................................................................	22	1	161.00	161	123	2	34	0	2
.................................................................................................................................AGTTTCCGGGATATCGTACTGT......................................................................................................................................................	22	1	139.00	139	49	0	89	0	1
.................................................................................................................................AGTTTCCGGGATATCGTACTGTAA....................................................................................................................................................	24	1	124.00	124	103	0	21	0	0
.................................................................................................................................AGTTTCCGGGATATCGTAC.........................................................................................................................................................	19	1	38.00	38	38	0	0	0	0
....................................................................................................................................TTCCGGGATATCGTACTGTATTT..................................................................................................................................................	23	1	33.00	33	30	0	3	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTG.......................................................................................................................................................	21	1	21.00	21	0	0	20	0	1
....................................................................................................................................TTCCGGGATATCGTACTGTATT...................................................................................................................................................	22	1	16.00	16	13	0	3	0	0
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTGC................................................................	22	1	13.00	13	3	1	3	2	4
...................................................................................................................................TTTCCGGGATATCGTACTGTATT...................................................................................................................................................	23	1	7.00	7	5	0	2	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGTC.....................................................................................................................................................	23	1	7.00	7	6	0	1	0	0
.....................................................................................................................................................................................................TACGAAACCTCA-------------------GAAATTTGCT...............................................................	22	1	6.00	6	0	0	4	0	2
.................................................................................................................................AGTTTCCGGGATATCGTACTGC......................................................................................................................................................	22	1	6.00	6	6	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACT........................................................................................................................................................	20	1	6.00	6	1	0	5	0	0
...................................................................................................................................TTTCCGGGATATCGTACTGTAC....................................................................................................................................................	22	1	6.00	6	6	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGTAT....................................................................................................................................................	24	1	6.00	6	5	0	0	0	1
...................................................................................................................................TTTCCGGGATATCGTACTGTA.....................................................................................................................................................	21	1	5.00	5	4	0	1	0	0
...................................................................................................................................................................................................AATACGAAACCTCA-------------------GAAATTTG.................................................................	22	1	5.00	5	3	0	2	0	0
.....................................................................................................................................TCCGGGATATCGTACTGTATTT..................................................................................................................................................	22	1	5.00	5	5	0	0	0	0
..................................................................................................................................GTTTCCGGGATATCGTACTGTA.....................................................................................................................................................	22	1	4.00	4	3	0	1	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGG......................................................................................................................................................	22	1	4.00	4	4	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGTAC....................................................................................................................................................	24	1	3.00	3	3	0	0	0	0
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTGCTT..............................................................	24	1	3.00	3	0	0	2	0	1
.................................................................................................................................AGTTTCCGGGATATCGTACTGTAAA...................................................................................................................................................	25	1	2.00	2	1	0	1	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGTT.....................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTG.................................................................	21	1	2.00	2	1	0	1	0	0
...................................................................................................................................TTTCCGGGATATCGTACTGTATAA..................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTGCTA..............................................................	24	1	2.00	2	0	0	1	0	1
....................................................................................................................................................................................................ATACGAAACCTCA-------------------GAAATTTGCC...............................................................	23	1	2.00	2	1	0	1	0	0
....................................................................................................................................TTCCGGGATATCGTACTGTAT....................................................................................................................................................	21	1	2.00	2	2	0	0	0	0
...................................................................................................................................TTTCCGGGATATCGTACTGTAA....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................CAAGTTTCCGGGATATCGTACT........................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGTAG....................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTA..........................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................AATACGAAACCTCA-------------------GAAATTTGT................................................................	23	1	1.00	1	0	0	0	0	1
.................................................................................................................................AGTTTCCGGGATATCGTACTGTCA....................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
..................................................................................................................................GTTTCCGGGATATCGTACTGTAAA...................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
....................................................................................................................................TTCCGGGATATCGTACTGTATTA..................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
................................................................................................................................AAGTTTCCGGGATATCGTACTA.......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................GTTTCCGGGATATCGTACTGTAA....................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
................................................................................................................................AAGTTTCCGGGATATCGTACTG.......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................AAGTTTCCGGGATATCGTACT........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.................................................................................................................................AGTTTCCGGGATATCGTACTGTCC....................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...................................................................................................................................TTTCCGGGATATCGTACTGTATTAA-................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
...................................................................................................................................TTTCCGGGATATCGTACTGTAG....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.................................................................................................................................AGTTTCCGGGATATCGTACTGA......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0

droGri2

---------------------------------------------------------------------------------------------------------------CCTGGTATTGCTGCTGCAAATTTCCGCGGTGTCGTATTGTATTAT-CA------------AAATGGTATAC---TCTGAACCACAATACGATTCCTCA-------------------GAAATTCGCTGCTGTAAGTTACC--------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................AAATTTCCGCGGTGTCGTATTG.......................................................................................................................................................	22	1	74.00	74	1	73
...............................................................................................................................CAAATTTCCGCGGTGTCGTATT........................................................................................................................................................	22	1	54.00	54	1	53
...............................................................................................................................CAAATTTCCGCGGTGTCGTAT.........................................................................................................................................................	21	1	20.00	20	0	20
................................................................................................................................AAATTTCCGCGGTGTCGTATT........................................................................................................................................................	21	1	16.00	16	1	15
................................................................................................................................AAATTTCCGCGGTGTCGTAT.........................................................................................................................................................	20	1	4.00	4	0	4
....................................................................................................................................................................................................ATACGATTCCTCA-------------------GAAATTCGCT...............................................................	23	1	3.00	3	0	3
................................................................................................................................AAATTTCCGCGGTGTCGTATTT.......................................................................................................................................................	22	1	2.00	2	0	2
...............................................................................................................................CAAATTTCCGCGGTGTCGTATTG.......................................................................................................................................................	23	1	2.00	2	0	2
...............................................................................................................................CAAATTTCCGCGGTGTCGTATTT.......................................................................................................................................................	23	1	2.00	2	0	2
....................................................................................................................................................................................................ATACGATTCCTCA-------------------GAAATTCG.................................................................	21	1	2.00	2	0	2
.....................................................................................................................................................................................................TACGATTCCTCA-------------------GAAATTCGCT...............................................................	22	1	1.00	1	0	1
...............................................................................................................................CAAATTTCCGCGGTGTCGTA..........................................................................................................................................................	20	1	1.00	1	0	1
....................................................................................................................................................................................................ATACGATTCCTCA-------------------GAAATTCGCTT..............................................................	24	1	1.00	1	0	1

dya_51

X:11886162-11886224 -

Known Ortholog

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.0	-27.9	-27.8