ID:

dya_503

 Coordinate:

2R:8631048-8631198 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.9 -21.6 -21.6

Flybase annnotation

exon [dyak_GLEANR_13661:6]; CDS [Dyak\GE13452-cds]; intron [Dyak\GE13452-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGGGATTTTGACAATTAAAACTATTTTTTTCTAATTAAAACTAGACACGCCAAACACATTAATTAAGATATGTTACTAAGATATCTAGGAGACATTTCCATCCACGTTTGAATCATTTATAAAATCATTCATTTCGTTGTGTACGAGTGTGGTTTTGAAGGTATATTATATTCGGAATGTGAAATATTATATTTGGCTAGGTGGACGAGGATTGGGCTACAACCAGGTGGAGACGCGGCGAATGCACGAC
****************************************************************..((((((.((...)).)))))).((((....))))...(((((((((((....((((...(((.(((((((((.....))))).))))...)))...))))....)))).)))))))................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V046
embryo
 V120
male body		 V058
head
................................................................TAAGATATGTTACTAAGATATCTAGGA................................................................................................................................................................ 27 0 1 7.00 7 0 7 0 0 0 0
................................................................................................................................................................................................TTTGGCTAGGTGGACGAGGATTGGGC................................. 26 0 1 6.00 6 5 0 0 0 1 0
............................................................................................................................................................................TCGGAATGTGAAATATTATATTTGGC..................................................... 26 0 1 5.00 5 4 0 1 0 0 0
.................................................................................................................................................................................................TTGGCTAGGTGGACGAGGATTGGGC................................. 25 0 1 4.00 4 3 0 0 1 0 0
..................................................................................................................................................................................TGTGAAATATTATATTTGGCTAGGTG............................................... 26 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................................................................................................TGGGCTACAACCAGGTGGAGACGCGGC........... 27 0 1 3.00 3 2 0 1 0 0 0
.............................................................................................................................................................................CGGAATGTGAAATATTATATTTGGC..................................................... 25 0 1 2.00 2 2 0 0 0 0 0
................................................................TAAGATATGTTACTAAGCTATCTAGGA................................................................................................................................................................ 27 1 1 2.00 2 0 2 0 0 0 0
........................................................................................................................TAAAATCATTCATTTCGTTGTGTACGA........................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGCGAA........ 25 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................TATATTTGGCTAGGTGGACGAGGAT...................................... 25 0 1 2.00 2 1 0 1 0 0 0
.................................................................................................TCCATCCACGTTTGAATCATTTATA................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................................................................TTGGGCTACAACCAGGTGGAGACGCGG............ 27 0 1 2.00 2 2 0 0 0 0 0
..........................................TAGACACGGCAAACACATTAATTAAGAT..................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................TATTATATTCGGAATGTGAAATAT............................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................TAATTAAAACTAGACACGCCAAACACA................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
............................................................TAATTAAGATCTGTTACTAAGATATC..................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................TCATTCATCTCGTTGTGTACGAGT...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................TTTCGTTGTGTACGAGTGTGGTTT............................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
.TGGGATTTAGACAATTAAAACTATTTT............................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
..GGGATTTTGACAATTAAAACTATTTTT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TGAGATATCTAGGAGACATTTCCATC.................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
................................................CGCCAAACACATTAATTAAGATATGT................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................TGGACGAGGATTGGGCTACAAC........................... 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................TCATTCATTTCGTTGTGTACGAGTG..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGA.......................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................AGGAGTCCCTTCCATCCACGTT.............................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 1
.............................TTCTAATTAAAACTAGACACGCCAAA.................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................TATTCGGAATGTGAAATATTATATT......................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGAGG........................................ 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................TCGTTGTGTACGAGTGTGGTTTTG............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGCGAATG...... 27 0 1 1.00 1 1 0 0 0 0 0
....................................TAAAACTAGACACGCCAAACACATTAAT........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TATTTGGCTAGGTGGACGAGGAT...................................... 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................TTTGGCTACGTGGACGAGGATTGGGC................................. 26 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................TTTGGCTAGGTGGACGAGGATTGG................................... 24 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................CCACGTTTGAATCATTTATAAAATCATT......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGC........... 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TCATTTCGTTGTGTACGAGTGTGG.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TTCGTTGTGTACGAGTGTGGTTTTG............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................TCATTCATTTCGTTGTGTACGAG....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CATTCATTTCGTTGTGTACGAGTG..................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGAG......................................... 25 0 1 1.00 1 1 0 0 0 0 0
.TGGGATTTTGACAATTAAAACTATT................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................TCGAAATGTGAAATATTATATTTGGC..................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TATTTGGCTAGGTGGACGAGGATTGG................................... 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................TAGGTGGACGAGGATTGGGCTACAACA.......................... 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................ATTGGGCTACAACCAGGTGGAGACGC.............. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TCATTTATAAAATCATTCATTTCGTT................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...................................TTAAAACTAGACACGCCAAACACAT............................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................ATTTGGCTAGGTGGACGAGGATTGG................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................AAAATCATGCATTTCGTTGTGTACG......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TGGGCTACAACCAGGTGGAGACGCTG............ 26 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................TGGGCTACAACCAGGTGGAGACGCG............. 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................TGTCGTTGTGTACGAGTGTGGTTT............................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................TTTCGTTGCGTACGAGTGTGGTTTTG............................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................GTGGAGACGCGGCGAATGCA.... 20 0 2 0.50 1 0 0 0 0 1 0

Anti-sense strand reads

TACCCTAAAACTGTTAATTTTGATAAAAAAAGATTAATTTTGATCTGTGCGGTTTGTGTAATTAATTCTATACAATGATTCTATAGATCCTCTGTAAAGGTAGGTGCAAACTTAGTAAATATTTTAGTAAGTAAAGCAACACATGCTCACACCAAAACTTCCATATAATATAAGCCTTACACTTTATAATATAAACCGATCCACCTGCTCCTAACCCGATGTTGGTCCACCTCTGCGCCGCTTACGTGCTG
*****************************************************..((((((.((...)).)))))).((((....))))...(((((((((((....((((...(((.(((((((((.....))))).))))...)))...))))....)))).)))))))................**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V052
head
 V058
head
...............................................TGCGGTTTGTGTAATTAATTCTATACA................................................................................................................................................................................. 27 0 1 8.00 8 0 8 0 0 0
........................................................................................................................................................................................................CCACCTGCTCCTAACCCGATGTTGGT......................... 26 0 1 3.00 3 3 0 0 0 0
..............................................................................................................................................................................................................GCTCCTAACCCGATGTTGGTCCACCT................... 26 0 1 3.00 3 3 0 0 0 0
................................................................................................................................................................................................AAACCGATCCACCTGCTCCTAACCCGAT............................... 28 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................ATGCTCACACCAAAACTTCCATAT..................................................................................... 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................GTTGGTCCACTACTGCCCCGCT......... 22 3 1 1.00 1 0 0 0 1 0
.......................................................................................................................................................................................................TCCACCTGCTCCTAACCCGATGTTGGT......................... 27 0 1 1.00 1 1 0 0 0 0
...............................................TGCGGTTTGTGTAATTAATTCTGTACA................................................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................................CTCGTAACCCGATGTTGGTCCACCT................... 25 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................TCACACCAAAACTTCCATATAATA................................................................................. 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................CCAAAACTTCCATATAATATAAG............................................................................. 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................CGATCCACCTGCTCCTAACCCGATG.............................. 25 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................CACACCAAAACTTCCATATAATATAA.............................................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CTTCCATATAATATAAGCCTTACA...................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................................TGAGGTTTGTGTAATTAATTCTATACA................................................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0
..........................................................TAATTAATTCTATACAATGATTC.......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................................TCTATACAATGATTCTATAGATCCT................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.....................................................................ATACAATGATTCTATAGATCCTCTGT............................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
....................................................................................................................AAATATTTTAGTAAGTAAAGCAACACAT........................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................CCACCTGCTCCTAACCCGATGTTGGTCC....................... 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................CCTGCTCCTAACCCGATGTTGGTCCA...................... 26 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................CCACCTGCTCCTAAACCGATGTTGT.......................... 25 2 1 1.00 1 0 0 1 0 0
...........................................................................................CTGTAAAGGTAGGTGCAAACTTAGT....................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................ACCACCTCTGCGCCCCTT........ 18 2 6 0.33 2 2 0 0 0 0
...............................................................................................................................TATGTAAAGCTTCACATGCT........................................................................................................ 20 3 9 0.11 1 1 0 0 0 0
..................................................................................................................................................................................................................................CCACCTCTGCGACGATTAT...... 19 3 12 0.08 1 0 0 1 0 0
....................................................................................................................AAACATTTTAGTCAGTAAAGT.................................................................................................................. 21 3 17 0.06 1 1 0 0 0 0
....................................................................................................................................................................................................AGATCTACCTGCGCCTAA..................................... 18 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:8630998-8631248 + dya_503 ATGGGATTT-TGAC---AATTAAAA--------CTATTTTTTT------------------------CTAATTAAAACTAGA----CACGCCAAAC--ACATTAAT------------TAAGA---------------------------------------------------------------------------------------------------TA--------TGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGATATCTAGGAGACATTTCCATCCACGTTTGAATCA-TTTATA------AAATCATTCATTTC----------GTTGTGTACGAGTGTGGTTTTGAA------------G-------GTATATTATATT-CGGAATGT-GA-----------------------------------AATATTATATTTGGCTAGGTGGACGAGGATTGGGCTACAACCAGGTGGAGACGCGGCGAATGCAC----GAC
droEre2 scaffold_4929:23574203-23574331 - AAAAATGTT--AGG---ATTGAAGA--------TTTT--TTATATAATCATA-----------------AATTAATACC-----------TTAAAT--GTTTAAGCGCTCTTTTAAATTGTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG------------------------------------------------CAAGATATTTGAGAAACCC-----------AATTTAGT------------------------------------------------------------------------------------TTATT--------------------------------------------------------------------------------------A----------------------------------------------A----ATG---AGT---------------------------------------------------CATTGCG
droSec2 scaffold_1:5852879-5853033 - GAAGGATTT-TGAC---AATAAAAACAAATTT-------GCTT------------------------CCAATTAAAACTAGG----CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCGTCCACGTTTGAATTA-TTAATA------AAATCATTAATTCC----------TCTGAGAACGAGTGTGATTTTGAA------------G-------GTATACTA-ACT-CGATATTA-TA-----------------------------------AATTTAATATTTAG-------------------------------------------------------CTA
droSim2 node_114215:76-199 - ATTCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------GTTGTGTACGAGTGTGGTTTTGAA------------G-------GTATATTATATT-CGGAATGT-GA-----------------------------------AATATTATATTTGGCTAGGTGGACGAGGATTGGGCTACAACCAGGTGGAGACGCGGCGAATGCAG----GAC
dm3 chr2R:13020534-13020725 + GTATCATTT-CGAC---AGTTAAAACAAATTG-------TTTT------------------------CTAATTAAAACTAGT----CACGAAAGGC--ACCGTAAC------------TAAGA---------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAAGAGAAATAATCATCCACGATTGAATCA-TCAATA------AAATCATTAATTCC----------CCTGAGAACAAGTGTGGTTTTAAT------------G-------GTATATTATGCT-CGGTATGT-AA-----------------------------------AATATTATATTTTGTTAC---------------------------------------------------ATG
droEug1 scf7180000409350:16657-16842 - AGAAAAACG-AAAT---AAATCATT--------T-----TTTC---------CTGTCTTGAAATTGACG---------------C-----CTAAATTGGTGCTCAC------------TACGA---------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGGGAAGT-----------AAGAAACAA-------------------------------------------------GTTGGGTCCACGATGAAATTAATTTATACACCCAAAGCGATTCACCTTTTTTTTAATATTTATGGACAGGT---------------------------------ATAATATATA-TATAATAT-AA-------------------------------TTTG---------------------------------------------------------------------TTA
droBia1 scf7180000302349:10406-10601 - TGCAGTTTA--AAA---AAATAAAA--------ATAAATTTTA------------------------GTA----AAACCA--TGT-----GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTAAGAATTCTTGCTGACTTCAGTGATATTAAAAAGAAATATTTCATTCCTTATTTTAGATCATTTTTTTGACATCTTT-------------ATGTTAGAGAAGT-----------ACGATTTTA--------ATTAAATTGTATCCGAAATTCT----------------------------------T---------------------------------------------------------------------------------------------------GAAAATAT-AA-----------------------------------AAAATTATAT-----------------------------------------------------------TCG
droTak1 scf7180000415243:69583-69732 - AAAATATTA--ATC---AATACCT----------------TATTT---------------------------------------------------------------------------AGA---------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTATGAAAAATGTCCATCAACGTTTGAATCA-TTAATT------ACATCATTAAGACC----------TGTGAGGACGAAAGTGTTGTCGACTATTTAGGAAGATACTGATGATATTCGA-CTT-CGATT--C-GA-----------------------------------AAT------------------------------------------------------------------ATT
droEle1 scf7180000489234:1316-1481 + ATATTAAAA-ACA-----------------------ATTTTT-------------------------------AAAATGTAATACTAATAAATAAA--ACTTTAAT------------AAAAA---------------------------------------------------------------------------------------------------TG--------TCCTAAAAAAATTTTTTTACTTAACCATACAATTTTTAGTAATCTATCACATTTTGTTTGAGCCATTAGGACTTTTTAAGTATTTGCGCGTACT-CAGAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------A-GA-----------------------------------AA-------------------------------------------------------------------TAT
droRho1 scf7180000762886:3333-3465 - GTACAACTT-TGGC---GATTCATT--------T-----TGGC-------------------------ATACTAGCAATAAG----CTTGCTACTA--GTATCCAT------------TTGAA---------------------------------------------------------------------------------------------------TG--------TCATACCAGGTTTTTTGGACAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACAATTCT----------------------------------GCGGCA-TTTCGA------AAAGTAT-----------------------------------------------------------------------------------------------------------------------------TTG---TGC---------------------------------------------------CGATACG
droFic1 scf7180000449154:6656-6715 + ATGGTATTT-TGAA---ACATAAAA--------TTGTGTTTTT------------------------CTAATCGAA------CGA-----CAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT--------------------------------------------------------------------------------------A----------------------------------------------A----A---------------------------------------------------------------TAA
droKik1 scf7180000302461:878646-878762 + ATTTTC-----AAA---AATTAAAA--------TTTGTCAATTTT--TGG--CAATTTTGAAAAAGGCG---------------A-----ACAA------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTCTTCCCGCGATAGCTAGATAGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCTGTGAATATATATGA-CTTATG--------------------------------------------------------------------------------------A----------------------------------------------G----G---------------------------------------------------------------TCA
droAna3 scaffold_12911:2066472-2066604 - ACCAGTTTT--ATTGGCAATACAGA----ATTGGTTT--TAAT--------------------------A----TGA----------------------CATTAAA------------TAAAT---------------------------------------------------------------------------------------------------TA--------TGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGAAAATTCAGG---------------------------------------------------AAATTTTTATTAT--------------------------------------------------------TTGAATGT-AAATTATTTTAATCATGCAGTTTATGTGTATGATTTT---------------------------------------------------------------------TAA
droBip1 scf7180000393620:14451-14631 + CTTTTGATT-GTA--------TAAA-----------------------CTCA-----------------AATCAAAATT-----------CGAAATCTATTCGAGT------------TAGAA---------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTCTTAAAT-----------AGAGGACAGTGC------------------------------------------------CACGCCCTTATTTTTTTCA-ATATTA------AATCTATTGACCAT----------GTGAACTTAAATCAAAAATCAGAA------------C-------TAATATCTTGTT-TCGTTCGT-GA-----------------------------------AATATTATTTTTGGC------------------------------------------------------CAG
dp5 XL_group1e:12492899-12493074 + AAGTAAAAT-GCT---------------------------TATTTACTCGAA-----------------AATTAAAAATATC----CGCGCT-------------------GATAAGTTAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------TTAACTAATTGCAAAATGT-----------AAGCTGCTGAATCGAAAGAAT--------------------------------------------------TCTATATATATATATATGA-ATTAAG------CATTCTTTTATTTC----------TTTGTGTATGCGTGTGTTTGTGTG------------T-------GTACATACTC----------------------------------------------------------------------------------------------------------------------TTC
droPer2 scaffold_262:4788-4897 + CGAGGAAAATTAGC---ACTAAACT--------TTAA------------T--CAGTTCTGCAACATTCGGGCTAAAATTGAA----CACG----------------------------------------------------------------------------------------------------------ATAGCGAGGACGCCAGCGAATA----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCC-------------A-------------------------------------------------CTATGATGTTTAGG-----------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------GGC
droWil2 scf2_1100000004762:3282408-3282594 - AACAATTTA--TAT---GTT-TATA--------TTAATTTT----------------------------TAATAAAAATAAA----CATATTTTAA----------GTTGTTTTAGATTATTAGATGTTAGAAATTTGTAATATTTTACTTGTATTTCATTTTTAGCTAAACATTATTAATTTAAATTTGCATTCAATAGCAGTTAGAAGAGTATTTAGAAATGTGGCAAAACA--------CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT
droVir3 scaffold_12936:465012-465094 - ATAAAAATT-TGTC---AATGAACA--------CTCTTT------------------------------AATTCATAACGGA----CACACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------AAAATTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGA-AGGTATGC-AA-------------------------------ATAT---------------------------------------------------------------------CTA
droMoj3 scaffold_6500:23622898-23623071 - ACTAAAAAT-AGAC---TATTAAAA--------AATTT-TTAA------------------------CATAATTAA------TGC-----CAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------ATTATTTTTAATTTGTATACTACTATAT-------------------T---------TATTATATGTTTTAATCTTTTATTTATGGATTA-TAATTA------AAT-----------------------TATATTTATATTTTGTTTT--A------------T-------GTTTATTTTATT-TGGAATGTACA-----------------------------------TATATT---------------------------------------------------------------ATA
droGri2 scaffold_15110:21771018-21771108 - TCACTTTTA---AA---AAT-AAAT--------ATATTTCTGA------------------------ACA----TATAAA---------------------------------------AGTA-----------------------------------------------------------------------------------------TATTTTTAAATATTAAGAAATG--------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCATATTTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTT-----------------------------------------------------------TCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
ATGGGATTT-TGAC---AATTAAAA--------CTATTTTTTT------------------------CTAATTAAAACTAGA----CACGCCAAAC--ACATTAAT------------TAAGA---------------------------------------------------------------------------------------------------TA--------TGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGATATCTAGGAGACATTTCCATCCACGTTTGAATCA-TTTATA------AAATCATTCATTTC----------GTTGTGTACGAGTGTGGTTTTGAA------------G-------GTATATTATATT-CGGAATGT-GA-----------------------------------AATATTATATTTGGCTAGGTGGACGAGGATTGGGCTACAACCAGGTGGAGACGCGGCGAATGCAC----GACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................TAAGA---------------------------------------------------------------------------------------------------TA--------TGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGATATCTAGGA.............................................................................................................................................................................................................................................2717.00700000000007
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTAGGTGGACGAGGATTGGGC.....................................2616.00605000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGGAATGT-GA-----------------------------------AATATTATATTTGGC.........................................................2615.00504100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTAGGTGGACGAGGATTGGGC.....................................2514.00403010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GA-----------------------------------AATATTATATTTGGCTAGGTG...................................................2613.00303000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTACAACCAGGTGGAGACGCGGC...............2713.00302100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATGT-GA-----------------------------------AATATTATATTTGGC.........................................................2512.00202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------AAATCATTCATTTC----------GTTGTGTACGA....................................................................................................................................................................2712.00202000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGCGAA............2512.00202000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTGGCTAGGTGGACGAGGAT..........................................2512.00201100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCACGTTTGAATCA-TTTATA------.......................................................................................................................................................................................................2512.00202000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTACAACCAGGTGGAGACGCGG................2712.00202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATT-CGGAATGT-GA-----------------------------------AATAT...................................................................2411.00101000000000
....................................................................TAATTAAAACTAGA----CACGCCAAAC--ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC----------GTTGTGTACGAGTGTGGTTT...........................................................................................................................................................2411.00100010000000
..GGGATTT-TGAC---AATTAAAA--------CTATTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
........................................................................................CGCCAAAC--ACATTAAT------------TAAGA---------------------------------------------------------------------------------------------------TA--------TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGAGGATTGGGCTACAAC...............................2211.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCATTTC----------GTTGTGTACGAGTG.................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGA..............................................2411.00101000000000
.........................................TT------------------------CTAATTAAAACTAGA----CACGCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-CGGAATGT-GA-----------------------------------AATATTATATT.............................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGAGG............................................2611.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------GTTGTGTACGAGTGTGGTTTTG.........................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGCGAATG..........2711.00101000000000
........................................................................TAAAACTAGA----CACGCCAAAC--ACATTAAT------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGGCTAGGTGGACGAGGAT..........................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTAGGTGGACGAGGATTGG.......................................2411.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGTTTGAATCA-TTTATA------AAATCATT...............................................................................................................................................................................................2811.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACCAGGTGGAGACGCGGC...............2211.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTC----------GTTGTGTACGAGTGTGG..............................................................................................................................................................2411.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC----------GTTGTGTACGAGTGTGGTTTTG.........................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCATTTC----------GTTGTGTACGAG...................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCATTTC----------GTTGTGTACGAGTG.................................................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATTTGGCTAGGTGGACGAG.............................................2511.00101000000000
.TGGGATTT-TGAC---AATTAAAA--------CTATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGGCTAGGTGGACGAGGATTGG.......................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGGACGAGGATTGGGCTACAACA..............................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTACAACCAGGTGGAGACGC..................2611.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-TTTATA------AAATCATTCATTTC----------GTT............................................................................................................................................................................2611.00101000000000
.......................................................................TTAAAACTAGA----CACGCCAAAC--ACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCTAGGTGGACGAGGATTGG.......................................2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTACAACCAGGTGGAGACGCG.................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGACGCGGCGAATGCA........2020.50100000010000
droEre2
AAAAATGTT--AGG---ATTGAAGA--------TTTT--TTATATAATCATA-----------------AATTAATACC-----------TTAAAT--GTTTAAGCGCTCTTTTAAATTGTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG------------------------------------------------CAAGATATTTGAGAAACCC-----------AATTTAGT------------------------------------------------------------------------------------TTATT--------------------------------------------------------------------------------------A----------------------------------------------A----ATG---AGT---------------------------------------------------CATTGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
GAAGGATTT-TGAC---AATAAAAACAAATTT-------GCTT------------------------CCAATTAAAACTAGG----CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCGTCCACGTTTGAATTA-TTAATA------AAATCATTAATTCC----------TCTGAGAACGAGTGTGATTTTGAA------------G-------GTATACTA-ACT-CGATATTA-TA-----------------------------------AATTTAATATTTAG-------------------------------------------------------CTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................AACTAGG----CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCGT..................................................................................................................................................................................................................................1811.0010010
droSim2
ATTCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------GTTGTGTACGAGTGTGGTTTTGAA------------G-------GTATATTATATT-CGGAATGT-GA-----------------------------------AATATTATATTTGGCTAGGTGGACGAGGATTGGGCTACAACCAGGTGGAGACGCGGCGAATGCAG----GACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGACGAGGATC.........................................15200.05100000010000000000
dm3
GTATCATTT-CGAC---AGTTAAAACAAATTG-------TTTT------------------------CTAATTAAAACTAGT----CACGAAAGGC--ACCGTAAC------------TAAGA---------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAAGAGAAATAATCATCCACGATTGAATCA-TCAATA------AAATCATTAATTCC----------CCTGAGAACAAGTGTGGTTTTAAT------------G-------GTATATTATGCT-CGGTATGT-AA-----------------------------------AATATTATATTTTGTTAC---------------------------------------------------ATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCC----------CCTGAGAACAAGTGTGGT.............................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TT------------------------CTAATTAAAACTAGT----CACGAAAGGC--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AGAAAAACG-AAAT---AAATCATT--------T-----TTTC---------CTGTCTTGAAATTGACG---------------C-----CTAAATTGGTGCTCAC------------TACGA---------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAGGGAAGT-----------AAGAAACAA-------------------------------------------------GTTGGGTCCACGATGAAATTAATTTATACACCCAAAGCGATTCACCTTTTTTTTAATATTTATGGACAGGT---------------------------------ATAATATATA-TATAATAT-AA-------------------------------TTTG---------------------------------------------------------------------TTASizeHit CountTotal NormTotal
No Reads
droBia1
TGCAGTTTA--AAA---AAATAAAA--------ATAAATTTTA------------------------GTA----AAACCA--TGT-----GA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTTAAGAATTCTTGCTGACTTCAGTGATATTAAAAAGAAATATTTCATTCCTTATTTTAGATCATTTTTTTGACATCTTT-------------ATGTTAGAGAAGT-----------ACGATTTTA--------ATTAAATTGTATCCGAAATTCT----------------------------------T---------------------------------------------------------------------------------------------------GAAAATAT-AA-----------------------------------AAAATTATAT-----------------------------------------------------------TCGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAATATTA--ATC---AATACCT----------------TATTT---------------------------------------------------------------------------AGA---------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTATGAAAAATGTCCATCAACGTTTGAATCA-TTAATT------ACATCATTAAGACC----------TGTGAGGACGAAAGTGTTGTCGACTATTTAGGAAGATACTGATGATATTCGA-CTT-CGATT--C-GA-----------------------------------AAT------------------------------------------------------------------ATTSizeHit CountTotal NormTotal
No Reads
droEle1
ATATTAAAA-ACA-----------------------ATTTTT-------------------------------AAAATGTAATACTAATAAATAAA--ACTTTAAT------------AAAAA---------------------------------------------------------------------------------------------------TG--------TCCTAAAAAAATTTTTTTACTTAACCATACAATTTTTAGTAATCTATCACATTTTGTTTGAGCCATTAGGACTTTTTAAGTATTTGCGCGTACT-CAGAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------A-GA-----------------------------------AA-------------------------------------------------------------------TATSizeHit CountTotal NormTotal
No Reads
droRho1
GTACAACTT-TGGC---GATTCATT--------T-----TGGC-------------------------ATACTAGCAATAAG----CTTGCTACTA--GTATCCAT------------TTGAA---------------------------------------------------------------------------------------------------TG--------TCATACCAGGTTTTTTGGACAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACAATTCT----------------------------------GCGGCA-TTTCGA------AAAGTAT-----------------------------------------------------------------------------------------------------------------------------TTG---TGC---------------------------------------------------CGATACGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGGTATTT-TGAA---ACATAAAA--------TTGTGTTTTT------------------------CTAATCGAA------CGA-----CAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT--------------------------------------------------------------------------------------A----------------------------------------------A----A---------------------------------------------------------------TAASizeHit CountTotal NormTotal
No Reads
droKik1
ATTTTC-----AAA---AATTAAAA--------TTTGTCAATTTT--TGG--CAATTTTGAAAAAGGCG---------------A-----ACAA------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTCTTCCCGCGATAGCTAGATAGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCTGTGAATATATATGA-CTTATG--------------------------------------------------------------------------------------A----------------------------------------------G----G---------------------------------------------------------------TCASizeHit CountTotal NormTotal
No Reads
droAna3
ACCAGTTTT--ATTGGCAATACAGA----ATTGGTTT--TAAT--------------------------A----TGA----------------------CATTAAA------------TAAAT---------------------------------------------------------------------------------------------------TA--------TGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGAAAATTCAGG---------------------------------------------------AAATTTTTATTAT--------------------------------------------------------TTGAATGT-AAATTATTTTAATCATGCAGTTTATGTGTATGATTTT---------------------------------------------------------------------TAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTTTTGATT-GTA--------TAAA-----------------------CTCA-----------------AATCAAAATT-----------CGAAATCTATTCGAGT------------TAGAA---------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTTCTTAAAT-----------AGAGGACAGTGC------------------------------------------------CACGCCCTTATTTTTTTCA-ATATTA------AATCTATTGACCAT----------GTGAACTTAAATCAAAAATCAGAA------------C-------TAATATCTTGTT-TCGTTCGT-GA-----------------------------------AATATTATTTTTGGC------------------------------------------------------CAGSizeHit CountTotal NormTotal
No Reads
dp5
AAGTAAAAT-GCT---------------------------TATTTACTCGAA-----------------AATTAAAAATATC----CGCGCT-------------------GATAAGTTAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------------------------TTAACTAATTGCAAAATGT-----------AAGCTGCTGAATCGAAAGAAT--------------------------------------------------TCTATATATATATATATGA-ATTAAG------CATTCTTTTATTTC----------TTTGTGTATGCGTGTGTTTGTGTG------------T-------GTACATACTC----------------------------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................AATTAAAAATATC----CGCGCT-------------------GATAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATGCGTGTGTTTGT..........................................................................................................................................................2011.0010100000000
......................................................................ATTAAAAATATC----CGCGCT-------------------GATAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
droPer2
CGAGGAAAATTAGC---ACTAAACT--------TTAA------------T--CAGTTCTGCAACATTCGGGCTAAAATTGAA----CACG----------------------------------------------------------------------------------------------------------ATAGCGAGGACGCCAGCGAATA----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCC-------------A-------------------------------------------------CTATGATGTTTAGG-----------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------GGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................GAA----CACG----------------------------------------------------------------------------------------------------------ATAGCGAGGACGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.402020000
...............................................................................GAA----CACG----------------------------------------------------------------------------------------------------------ATAGCGAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201010000
...............................................................................GAA----CACG----------------------------------------------------------------------------------------------------------ATAGCGAGGACGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201010000
.....................................................................GGCTAAAATTGAA----CACG----------------------------------------------------------------------------------------------------------ATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171010000
droWil2
AACAATTTA--TAT---GTT-TATA--------TTAATTTT----------------------------TAATAAAAATAAA----CATATTTTAA----------GTTGTTTTAGATTATTAGATGTTAGAAATTTGTAATATTTTACTTGTATTTCATTTTTAGCTAAACATTATTAATTTAAATTTGCATTCAATAGCAGTTAGAAGAGTATTTAGAAATGTGGCAAAACA--------CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATAAAAATT-TGTC---AATGAACA--------CTCTTT------------------------------AATTCATAACGGA----CACACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------AAAATTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGA-AGGTATGC-AA-------------------------------ATAT---------------------------------------------------------------------CTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....AAATT-TGTC---AATGAACA--------CTCTTT------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ACTAAAAAT-AGAC---TATTAAAA--------AATTT-TTAA------------------------CATAATTAA------TGC-----CAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------ATTATTTTTAATTTGTATACTACTATAT-------------------T---------TATTATATGTTTTAATCTTTTATTTATGGATTA-TAATTA------AAT-----------------------TATATTTATATTTTGTTTT--A------------T-------GTTTATTTTATT-TGGAATGTACA-----------------------------------TATATT---------------------------------------------------------------ATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCACTTTTA---AA---AAT-AAAT--------ATATTTCTGA------------------------ACA----TATAAA---------------------------------------AGTA-----------------------------------------------------------------------------------------TATTTTTAAATATTAAGAAATG--------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCATATTTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTT-----------------------------------------------------------TCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:41 PM