ID:

dya_501

 Coordinate:

2R:8628732-8628788 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -9.8 -9.7

Flybase annnotation

exon [dyak_GLEANR_13661:2]; CDS [Dyak\GE13452-cds]; CDS [Dyak\GE13452-cds]; exon [dyak_GLEANR_13661:3]; intron [Dyak\GE13452-in]

No Repeatable elements found

mature
  1. dya_501  2R:8628758-8628783 +
  2. dya_505  2R:8635929-8635954 +
star

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
CCTTTTAAATGGAACACCCTTCCACGCGGTTAATCCCGTGTCGGACGAAGGTTGGTGATCAAAGGGCATAAGCCATTACATAACCACATAAATCTTCCTGATTTCAGCCACTTTGACACACATTTTCTCGATAACCAAACCAACTGTGATTTTCTGC
**************************************************.(((..(((((...(((....)))........................))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V046
embryo
 M026
head
 V058
head
 V052
head
.................................TCCCGTGTCGGACGAAGGTTGGTGA................................................................................................... 25 0 2 41.50 83 7 70 1 5 0 0 0 0
..............................TAATCCCGTGTCGGACGAAGGTTGG...................................................................................................... 25 0 2 22.00 44 32 0 10 1 1 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGTGA........ 27 0 2 20.50 41 17 21 3 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTGAT....................................................... 26 0 2 17.00 34 23 10 1 0 0 0 0 0
....TTAAATGGAACACCCTTCCACGCGGT............................................................................................................................... 26 0 2 10.50 21 11 7 3 0 0 0 0 0
..TTTTAAATGGAACACCCTTCCACGCGG................................................................................................................................ 27 0 2 10.50 21 14 0 4 1 2 0 0 0
..TTTTAAATGGAACACCCTTCCACGCGGT............................................................................................................................... 28 0 2 10.00 20 10 7 2 0 1 0 0 0
.....TAAATGGAACACCCTTCCACGCGGT............................................................................................................................... 25 0 2 10.00 20 7 13 0 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTGATT...................................................... 27 0 2 8.50 17 17 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGT.......... 25 0 2 7.50 15 13 0 2 0 0 0 0 0
..............................TAATCCCGTGTCGGACGAAGGTTGGTGA................................................................................................... 28 0 2 6.50 13 0 10 1 2 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGTG......... 26 0 2 6.00 12 9 0 3 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGTGATT...... 29 0 2 6.00 12 6 0 6 0 0 0 0 0
......................................TGTCGGACGAAGGTTGGTGATCAAAGG............................................................................................ 27 0 2 5.50 11 1 10 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGAAGGTTGGTG.................................................................................................... 27 0 2 4.50 9 2 5 0 2 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGTGAT....... 28 0 2 4.00 8 4 4 0 0 0 0 0 0
...............................................................................................TCCTGATTTCAGCCACTTTGACACACA................................... 27 0 2 3.00 6 6 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAACCCAACTGTGA........ 27 1 2 3.00 6 0 6 0 0 0 0 0 0
....TTAAATGGAACACCCTTCCACGCGG................................................................................................................................ 25 0 2 3.00 6 3 0 0 1 2 0 0 0
...............................AATCCCGTGTCGGACGAAGGTTGG...................................................................................................... 24 0 2 2.50 5 5 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTG........... 24 0 2 2.50 5 3 0 1 0 0 1 0 0
...................................................................................................................................TAACCAAACCAACTGTGATTTTCTGC 26 0 2 2.00 4 4 0 0 0 0 0 0 0
....TTAAATGGAACACTCTTCCACGCGGT............................................................................................................................... 26 1 2 2.00 4 0 4 0 0 0 0 0 0
....................................................................TAAGCCATTACATAACCACATAAATCT.............................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................TCTCGATAACCAAACCAACTGTGATT...... 26 0 2 2.00 4 3 0 1 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTGA........................................................ 25 0 2 2.00 4 4 0 0 0 0 0 0 0
.............................TTAATCCCGTGTCGGACGAAGGTTGG...................................................................................................... 26 0 2 2.00 4 3 0 1 0 0 0 0 0
..TTTTAAATGGAACACCCTTCCACG................................................................................................................................... 24 0 2 1.50 3 0 3 0 0 0 0 0 0
........................................TCGGACGAAGGTTGGTGATCAAAGGGC.......................................................................................... 27 0 2 1.50 3 1 0 2 0 0 0 0 0
......................................................GTGATCAAAGGGCATAAGCCATTACA............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGGTAACCAAACCAACTGTGA........ 27 1 2 1.00 2 2 0 0 0 0 0 0 0
....................TCCACGCGGTTAATCCCGTGTCGGACG.............................................................................................................. 27 0 2 1.00 2 2 0 0 0 0 0 0 0
................................................................................TAACCACATAAATCTTCCTGATTTCAGC................................................. 28 0 2 1.00 2 1 0 1 0 0 0 0 0
.................................TCCCGTGTCGGACGAAGGTTGGTG.................................................................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0 0
....................................................................TAAGCCATTACATAACCACATAAATC............................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........TGGAACACCCTTCCACGCGGTTAATCC......................................................................................................................... 27 0 2 1.00 2 1 0 1 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCACCTGTGA........ 27 1 2 1.00 2 0 2 0 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTG......................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................TGTTCTCGATAACCAAACCAACTGTGATT...... 29 1 2 1.00 2 0 0 2 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACT............ 23 0 2 1.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................TTTCTCGATAACCAAACCAACTGTGA........ 26 0 2 1.00 2 2 0 0 0 0 0 0 0
............................................................................................................CACTTTGACACACATTTTCTCGATAACC..................... 28 0 2 1.00 2 2 0 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGCAGGTTGGTG.................................................................................................... 27 1 2 1.00 2 0 2 0 0 0 0 0 0
.........................................................ATCAAAGGGCATAAGCCATTACATAAC......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................TGTTCTCGATAACCAAACCAACTGT.......... 25 1 2 0.50 1 0 0 1 0 0 0 0 0
............................................................................................................................TGCTCGATAACCAAACCAACTGTGAT....... 26 1 2 0.50 1 0 0 1 0 0 0 0 0
.....................................................................................................TTTCAGCCACTTTGACACACA................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
..........................CGGTTAATCCCGTGTCGGACGAAGG.......................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................TGTCGGACGAAGGTTGGCGATCAAAGG............................................................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTGAAT...................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
....TTAAATGGAACACCCTTCCAAGCGGT............................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................TACATAACAACATAAATCTTCCTGA........................................................ 25 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................AGTACATAGCCACATAAATCTTCCTGAT....................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0
....................TCCACGCGCTTAATCCCGTGTCGGACG.............................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0
..........GGAACACCCTTCCACGCGGT............................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................TCGGACGAAGGTTGGTGATAAAAGG............................................................................................ 25 1 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................ATCCTGATTTCAGCCACTTTGACACACA................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGAAGGTTGGT..................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................TCCTGATTTCAGCCACTTTGACACA..................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................TAAATCTTCCTGATTTCAGCCACTT............................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0
.....TAAATGGAACACCCTTCCACGCGG................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................TTCAGCCACTTTGACACACATTTTCTCGA.......................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACCACATAAATCTTCCTGATTTC.................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0
..TTTTAAATGGAACACCCTTCCACGCG................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0
.....TAAATGGAACACCCTTCCACGCGGTTAA............................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................TAACCACAGAAATCTTCCTGATT...................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................TAAATCTTCCTGATTTCAGCCACT............................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCCACTGTGA........ 27 1 2 0.50 1 0 1 0 0 0 0 0 0
.................................TTCCGTGTCGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
....................................CGTGTCGGACGAAGGTTGGTGATC................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACGACATAAATCTTCCTGATT...................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TGTTCTCGATAACCAAACCAACTG........... 24 1 2 0.50 1 0 0 1 0 0 0 0 0
......................................TGTTGGACGAAGGTTGGTGATCAAAGG............................................................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................................................................AGCCACTTTGACACACATTTTCTCGA.......................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGCCGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
.................................TCCCTTGTCGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................TCTCGATAACCAAACCAACT............ 20 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................................TCGATAACCAAACCAACTGTGATTT..... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACCACATAAAGCTTCCTGGT....................................................... 26 2 2 0.50 1 0 1 0 0 0 0 0 0
.................................TCACGTGTCGGACGAAGGTTGGTG.................................................................................................... 24 1 2 0.50 1 0 0 1 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACAACCTGTGA........ 27 2 2 0.50 1 0 1 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGCAGGTTGG...................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
.....................................GTGTCGGACGAAGGTTGGT..................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0 0
..............................................................................................................................GTCGATAACCAAACCAACTGTGAT....... 24 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................GATCTTTTCTCGATAACCAAACCAACTGT.......... 29 3 2 0.50 1 0 0 1 0 0 0 0 0
..........................................................................................................................TTTTCTCGGTAACCAAACCAACTGTGAT....... 28 1 2 0.50 1 1 0 0 0 0 0 0 0
......AAATGGAACACCCTTCCACGCGGT............................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGCCGGTTGGTGA................................................................................................... 28 2 2 0.50 1 0 1 0 0 0 0 0 0
.................................TCCCGTGTAGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGTCGGACGAAGGTTGGT..................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGCAGGTTGGTGA................................................................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0 0
...........................GGTTAATCCCGTGTCGGAC............................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACCACATAAATCTT............................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................TCGGAGGAAGGTTGGTGATCAAAGGGC.......................................................................................... 27 1 2 0.50 1 0 0 1 0 0 0 0 0
....TTAAATGGTACACCCTTCCACGCGG................................................................................................................................ 25 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................TCTTCCTGATTTCAGCCACTTTGACA....................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGTCGGACCAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
..............................TAATCCCGTGTAGGACGAAGGTTGG...................................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0 0
......................................................................................................TTCAGCCACTTTGACACACA................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACGACATAAATCTTCCTGAT....................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................TTACATAACCACATAAATCTTCCTGAT....................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................TCAGCCACTTTGACACACATTTTCTG............................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0
......AAATGGAACACCCTTCCACGCGG................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................ACATAACCACATAAATCTTCCTGATTT..................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
..TTTAAAATGGAACACCCTTACACTCGGT............................................................................................................................... 28 3 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................TCCTGATTTCAGCCACTTTGACACACATT................................. 29 0 2 0.50 1 1 0 0 0 0 0 0 0
...TTTAAATGGAACACCCTTCCACGCGGT............................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................................TCGATAACCAAACCAACTG........... 19 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................TTCAGCCACTTTGACACACATTTTCC............................. 26 1 2 0.50 1 0 0 1 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTGC.......... 25 1 2 0.50 1 0 0 0 0 0 1 0 0
............................................................................TGCATAACCACATAAATCTTCCTGAT....................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGTTGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................TTCCTGATTTCAGCCACTTTGACACACT................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0
..TTTTAAATGGAACACCCTTCCGCGCGGT............................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0
..TTCTAAATGGAACACCCTTCCACGCGGT............................................................................................................................... 28 1 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................................TTACATAACCACATAAATCTTCCTGATT...................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAAACCAACTATGA........ 27 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATAACCAACCCAACTGTGAT....... 28 1 2 0.50 1 0 1 0 0 0 0 0 0
....TTAAATGGGACACCCTTCCACGCGG................................................................................................................................ 25 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................TCTTCCTGATTTCAGCCACTTTGAC........................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................TTTGACACACATTTTCTCGATAACC..................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACATAACCACATCAATCTTCCTGAT....................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................................................TTTCCTCGATAACCAAACCAACTGT.......... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
.....TAAATGGAACACCGTTCCACGCGGT............................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
................................ATCCCGTGTCGGACGAAG........................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0
.....................................GTGTCGGACGAAGGTTGG...................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................TCCTGATTTCAGCCACTTTGGCACACA................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................TCAGCCACTTTGACACACATTTTCTCGAT......................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................TGTCGGACGAAGGTTGGTGATCAAT.............................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0
..............CACCCTTCCACGCGGTTAATCCCGTG..................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0
..............................TAATCCCGGGTCGGACGAAGGTTGGTG.................................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................................AGCCACTTTGACACACATTTTCTCGAT......................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGTCCGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
.................................TCCCGTGTCGGACGAAGGTTGGTGAA.................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0 0
..............................TAATCCCGTGTCGGACGAAGGC......................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0
.............................................................................................................................TCTCGATAACCGAACCAACTGTGATT...... 26 1 2 0.50 1 0 0 1 0 0 0 0 0
........................CGCGGTTAATCCCGTGTCGGACGAAGG.......................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................CCCGTGTCGGACGAAGGTTGGTGA................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................TCCCGTGGCGGACGAAGGTTGGTGA................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................TACATAACAACATAAATCTTCCTGATT...................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTCTCTCGATAACCAAACCAACTGTGATC...... 29 2 2 0.50 1 0 0 1 0 0 0 0 0
....TTAAATGGAACACACTTCCACGCGGT............................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0
..............................TAATCCCATGTCGGACGCAGGTTGGTG.................................................................................................... 27 2 2 0.50 1 0 1 0 0 0 0 0 0
...TTTAAATGGAACACCCTTCCACGCGG................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................ACATAACCACATAAATCTTCCT.......................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................TAATCCCGAGTCGGACGAAGGTTGG...................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................TTTTCTCGATGACCAAACCAACTGTGA........ 27 1 2 0.50 1 0 1 0 0 0 0 0 0
...............................AATCCCGTATCGGACGAAGGTTGGTGA................................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................TCGGACGAAGGTTGGTGATCAAAGGG........................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0
............................................................................................................................TTATCGATAACCAAACCAACTGTGATT...... 27 1 2 0.50 1 0 0 1 0 0 0 0 0
..............................TAATCCCGGGTCGGACGAAGGTTGG...................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
..TTTTAAATGGAACACCCTTCCACGCGGC............................................................................................................................... 28 1 2 0.50 1 0 0 1 0 0 0 0 0
..TTTTAACTGGAACACTCTTCCT..................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 1
..............................................GAAGCATGGTGATCAAAG............................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 1 0
..............................................GAAGGATGGTGATCAAACA............................................................................................ 19 3 17 0.06 1 0 0 0 0 1 0 0 0
.......................................GTAGGACGAGGGTTGGTGC................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGAAAATTTACCTTGTGGGAAGGTGCGCCAATTAGGGCACAGCCTGCTTCCAACCACTAGTTTCCCGTATTCGGTAATGTATTGGTGTATTTAGAAGGACTAAAGTCGGTGAAACTGTGTGTAAAAGAGCTATTGGTTTGGTTGACACTAAAAGACG
**************************************************.(((..(((((...(((....)))........................))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V046
embryo
..........................................................................................................CGGTGAAACTGTGTGTAAAAGAGCTAT........................ 27 0 2 12.50 25 0 23 2 0 0
.............................................................TTCCCGTATTCGGTAATGTATTGGT....................................................................... 25 0 1 11.00 11 11 0 0 0 0
..........................................................................................................CGGTGAAACTGTGTGTAAAAGAGCTA......................... 26 0 2 11.00 22 11 0 11 0 0
................................TAGGGCACAGCCTGCTTCCAACCACT................................................................................................... 26 0 2 9.50 19 2 17 0 0 0
.......................TGCGCCAATTAGGGCACAGCCTGCTT............................................................................................................ 26 0 2 6.50 13 1 11 0 1 0
................................TAGGGCACAGCCTGCTTCCAACCAC.................................................................................................... 25 0 2 5.50 11 2 9 0 0 0
..............................................................TCCCGTATTCGGTAATGTATTGGT....................................................................... 24 0 1 3.00 3 1 0 2 0 0
...........................................................................................................GGTGAAACTGTGTGTAAAAGAGCTA......................... 25 0 2 3.00 6 6 0 0 0 0
...............................................................CCCGTATTCGGTAATGTATTGGT....................................................................... 23 0 1 3.00 3 2 0 0 0 1
...............................TTAGGGCACAGCCTGCTTCCAACCACT................................................................................................... 27 0 2 2.50 5 5 0 0 0 0
.................................AGGGCACAGCCTGCTTCCAACCACT................................................................................................... 25 0 2 2.00 4 2 2 0 0 0
.............................................................................................................TGAAACTGTGTGTAAAAGAGCTA......................... 23 0 2 1.50 3 3 0 0 0 0
................................TAGGGCACCGCCTGCTTCCAACCACT................................................................................................... 26 1 2 1.50 3 0 3 0 0 0
................................TAGGGCACCGCCTGCTTCCAACCAC.................................................................................................... 25 1 2 1.50 3 0 3 0 0 0
........................GCGCCAATTAGGGCACAGCCTGCTT............................................................................................................ 25 0 2 1.50 3 3 0 0 0 0
...............................TTAGGGCACAGCCTGCTTCCAACCAC.................................................................................................... 26 0 2 1.50 3 2 0 1 0 0
..............................................................TCCCGTATTCGGTAAGGTATTGGT....................................................................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAACTGTGTGTAAAAGAGCT.......................... 21 0 2 1.00 2 2 0 0 0 0
..........................................................AGTTTCCCGTATTCGGTAATGTATTGGT....................................................................... 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................GGTGAAACTGTGTGTAAAAGAGCT.......................... 24 0 2 1.00 2 2 0 0 0 0
..............................................................TCCCGTATTCGGTAAAGTATTGGT....................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................AGGGCACAGCCTGCTTCCAACCACTAGT................................................................................................ 28 0 2 1.00 2 2 0 0 0 0
............................................................CTTCCCGTATTCGGTAATGTATTGGT....................................................................... 26 1 1 1.00 1 1 0 0 0 0
..................GAAGGTGGCCCAATTGGGGC....................................................................................................................... 20 3 3 0.67 2 2 0 0 0 0
.................................AGGGCACAGCCTGCTTCCAACCACTA.................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
....................................GCACAGCCTGCTTCCAACCAC.................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................TTAGGGCACAGCCTGCTTCCAACCA..................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
........................GCGCCAATTAGGGCACAGCCTGCTTC........................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.................................AGGGCACAGCCGGCTTCCAACCACT................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
.......................TGCGCCCATTAGGGCACAGCCTGCTT............................................................................................................ 26 1 2 0.50 1 0 1 0 0 0
..........................................................................................................CGGTTAAACTGTGTGTAAAAGAGTTAT........................ 27 2 2 0.50 1 0 0 1 0 0
.................................AGGGCACGGCCTGCTTCCAACCACT................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
.........................................................................................................CCGGTGAAACTGTGTGTAAAAGAGCTAT........................ 28 1 2 0.50 1 0 0 1 0 0
.................................AGGGCACAGCCTGCTTCCAACCACTAG................................................................................................. 27 0 2 0.50 1 0 0 1 0 0
.................................AGGGCACAGCCTGCTTCCAACCAC.................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
..................................................................................................ACTAAAGTCGGTGAAAGTGTGTGTA.................................. 25 1 2 0.50 1 1 0 0 0 0
.........................................................................................................CCGGTGAAACTGTGTGTAAAAGAGCT.......................... 26 1 2 0.50 1 0 0 1 0 0
................................TAGGGCCCAGCCTGCTTCCAACCACT................................................................................................... 26 1 2 0.50 1 0 1 0 0 0
.................................AGGGCACAGCCTGCTGCCAACCAC.................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
...............CGGGAAGGTGCGCCAATTAGGGCAC..................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..........................................................................................TTAGAAGGACTAAAGTCGGTGAA............................................ 23 0 2 0.50 1 0 0 0 1 0
................................TAGGGCACAGCCTGCTTCGAACCACT................................................................................................... 26 1 2 0.50 1 0 1 0 0 0
................................TAGGGCCCAGCCTGCTTCCAACAAC.................................................................................................... 25 2 2 0.50 1 0 1 0 0 0
................................TAGGGCACAGCCGGCTTCCAACCACT................................................................................................... 26 1 2 0.50 1 0 1 0 0 0
................................TAGGGCACAGCCGGCTTCAAACCACT................................................................................................... 26 2 2 0.50 1 0 1 0 0 0
...............................TTAGGGCACAGCCTGCTTACAACCACT................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
.................................AGGGCACAGCCTGCTTCCAACCACTAGG................................................................................................ 28 1 2 0.50 1 1 0 0 0 0
..........................................................................................................CGGTGAAACTGTGTGTAAAAGAGATAT........................ 27 1 2 0.50 1 0 1 0 0 0
..........................................................................................................CGGTGAAACTGTGTGTAAAAGAGATA......................... 26 1 2 0.50 1 0 0 1 0 0
................................TAGGGCACCGCCTGCTTGCAACCAC.................................................................................................... 25 2 2 0.50 1 0 1 0 0 0
.........ACCTTGTGGGAAGGTGCGCCAAT............................................................................................................................. 23 0 2 0.50 1 0 0 0 1 0
.................................AGGGCACAGCCTGCTTCCAGCCACTAGT................................................................................................ 28 1 2 0.50 1 1 0 0 0 0
...........................................................................................................GGTGAAACTGTGTGTAAAAGAGCGA......................... 25 1 2 0.50 1 0 0 1 0 0
..........................................CCTGCTTCCAACCACTAGTTTCCCGTA........................................................................................ 27 0 2 0.50 1 1 0 0 0 0
....................................GCACAGCCTGCTTCCACCCACTAGT................................................................................................ 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................AAACTGTGTGTACAAGAGCTA......................... 21 1 2 0.50 1 1 0 0 0 0
.................................AGGGCACCGCCTGCTTCCAACCACT................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
..............................................................................................................................GAGCTATTGGTTTGGTTGACACTAAA..... 26 0 2 0.50 1 1 0 0 0 0
..........................GCCAATTAGGGCACAGCCTGCTTC........................................................................................................... 24 0 2 0.50 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:8628682-8628838 + dya_501 CCTTTTAAATGGAACACCCTTCCACGCGGTTAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATAAG-----------------------------------------CC-------ATTA-------CATAACCA-CATAAA-TCTTCCTGATTT--------CAGCCACTTTGACACACATTTTCTCGATAACCAAACCAACTGTGATTTTCTGC
droEre2 scaffold_4845:17482632-17482786 + TCTTTTAAATGGAACCCCTTTCCACGCGGCTAGTCCCGTGTCGGACGAAGGTTAGTG--------ATGAAAGG--------GCATTGG-----------------------------------------A--------TTTA-------CA-AACCA-TATAAA-TCTTCCTGATTT--------CAGCCACCTTGACACACATTTTCTCGATAACGAAACCAACTATTATATTCTGT
droSec2 scaffold_1:5854706-5854861 - TCTTTTAAATGGAACACCATTCCATGCGGTCAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATTCG-----------------------------------------A--------TTTA-------CATAACCA-TATTAA-TCTTCTTGACTT--------TAGCCACCTTGAAACACATTTTCTCGATAACCAAACCAACTGTGATATTCTGC
droSim2 2r:9014888-9015043 - TCTTTTAAATGGAACACCATTCCATGCGGTCAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATTCG-----------------------------------------A--------TTTA-------CATAACCA-TATTAA-TCTTCTTGACTT--------TAGCCACCTTGACACACATTTTCTCGATAACCAAACCAACTGTGATATTCTGC
dm3 chr2R:8309479-8309634 - TTTGATGAATGGCACCCCATTCCATTCGGTTAATCCTGTGCTAGATGATGGTAAGTA--------CAGTAAAG--------TGGGAAA-----------------------------------------TTGT-----AT---------TAAAATGA-AATTAA-TTCAT-TTGTTA--------TAGCAACCTTGACGCATGTGTTTTCGATCACAAAGCCCACACTGATATTTTGT
droEug1 scf7180000409462:1801591-1801745 + TCTGTTGAATGGAACACCCTTTCATGCGGTGAATCCGGTGACGGACGAAGGTTGGTA--------ATCAGAAG--------TTCTTAT--------------------------------------------------TATA-------CAAAATTA-TTAATA-TTTTTTTGATTT--------TAGTTACTCTGACACACATTTTTTCGATAACCAAACCAACTGTTGTATTTTGC
droBia1 scf7180000301754:1595166-1595321 + TCTCTTGAATGGAACAGCCTTCCACGCGGTAAATCCAGTCTCGGACGAAGGTGAGTT--------ATCACAAT-------ATTCAGTT--------------------------------------------------TTTG-------CATAGTCA-TCATTT-TATTTCTGACTT--------CAGCTACGTTGAGACACATTTTCTCGATAACCAAACCAACTATAATATTCTGC
droTak1 scf7180000415398:168893-169049 - TCTGTTGAATGGAACGCCTTTCCACGCGGTGAATCCGGTATCGGACGAAGGTTTGTG--------ATTAAAGG--------TCATTAG-----------------------------------------C--------TTGA------ATACAATCT-TAATAA-TATTTGTGATTT--------CAGCTACCTTGACACATATTTTCTCCATAACCAAACCAACTGTGATATTCTGC
droEle1 scf7180000491027:206563-206722 - CCTGCTGAATGCAACTCCCTTCCACGCGGTGAATCCTGTCTCGGACGAAGGTTAGTG--------ATCAATGG--------CTATTCTAACTAACATTAAGAA------------------------------------------------TAATTTTTA-----ACA-TTATACTT--------TAGCCACCCTGACTCACGTCTTCTCCATAACCAAACCAACTGTGATATTCTGC
droRho1 scf7180000779469:222364-222521 - CCTGCTGAATACAACTCCCTTTCACGCGGTGAATCCGGTGGCGGACGAAGGTAAGTC--------ATTTAAAG--------TTTTCAA--CCGA-------------TA-----------------TTAA--------CT----------AATATTTTAA-----ATA-ATATACTT--------CAGCTACCTTATCACACGTTTTCTCAATAACCAAACCTACTGTAATTTTCTGC
droFic1 scf7180000453778:218652-218812 + TCTTATGAATGGCACTCCCTTCCATTCGGTCAACCCGATGCTAGATGATGGTCAGTA--------TAGTC-------------------------TTTAAGGG-ATTGA-----------------G--CGATAAGGAACAA-------CA-AAACT-TACCAA-------TTTTTT--------CAGCCACTTTAACTCACGTGTTCTCGATTACCAAGCCAACGCTGATATTTTGC
droKik1 scf7180000302682:2048498-2048662 + TTTTTTAAATGGGACACCCTTTCATGCCATCAATCCGGTAATGGATGAAGGTTGGTATTTATACGATCAAAGG--------TTATTTG--CA----------G-A-CTTC-----------------------------T---------TAC---AA-TTTATTATAA-TTTTTCTT--------TAGCCACCATGACCCACGTTTTTTCCATAACCAAGCCAAGAATTATATTCTGC
droAna3 scaffold_13266:5612879-5613039 - TCTGATGAATGCAACACCCTTCCATGCGGTTAATCCTGTGCTCGATCAAGGTAAGTC--------AGGAG-------------------------CTAAAGAG-ATCTC-----------------TTGG--------TT-A-------GTTAATTA-TGTGTT-TTATTTGTGACC--------CAGGTACTCTGACGCATGTGTTCTCTATCACCAAGCCAACTCTGATATTCTGT
droBip1 scf7180000395529:2118-2276 + TCTGATGAATGCCACACCCTTTCACGCAGTGAATCCTGTACTCGATCAAGGTGAGTC--------CGGAG-----------GTATGGA--------------G-GTCTC-----------------TTGG--------TT----------AGAATAA-TGGATT-ACTTTTGCGGTA--------TAGGTACATTGACGCATGTCTTCTCGATCACCAAGCCAACTCTGATATTCTGT
dp5 3:7524377-7524545 - CCTAATGAATGGAACACCATTCCACTCGGTTAATCCGGATCAAGACGAAGGTTGGTA--------CTGCC-------------------------ATCAAGAGTATCGCCTAACAATTTCTGAGTA------------------------ATAAGTA-TGGGAA-TCT-G-TTGACG--------CAGCTACCGTAACCCATGTGTTCTCGATAACCAATCCCAGTCTGATATTCTGC
droPer2 scaffold_2:7718907-7719075 - CCTAATGAATGGAACACCATTCCACTCGGTTAATCCGGATCAAGACGAAGGTTGGTA--------CTGCC-------------------------ATCAAGAGTATCGCTTAACAATTTCTGAGTA------------------------ATAAGTA-TGGGAA-TCT-G-TTGACG--------CAGCTACCGTAACCCATGTGTTCTCGATAACCAATCCAAGTCTGATATTCTGC
droWil2 scf2_1100000004513:4882239-4882400 - CCTCATGAATGGGACTCCATTTCACGCAGTGAATCCAGTACTTGACGAAGGTTTGTC--------CACTTTTAGTCCAATGTGAATAT--------------------T--------------------T-TA-----TT---------TGAAAACA---TATG-TATTTCTGG-AT--------TAGACACCATTCGCCATGTGTTGTCAATTACTAAACCGAATCTAATATTCTGT
droVir3 scaffold_12875:18141175-18141330 + TCTAATGAATTGCACACCCTTTCATTCTGTGAATCCAATGCTCGATGAAGGTTTGTC--------ACCCATAG--------ATTTCAC--------------------------------------TTGG--------TTGC-------CT-CCC---TCAGTA-GAATCTTATTTA--------CAGCGACCATTCAGCATGTTTATGAAATAACTAAGCCAATGCTTATATTCTGC
droMoj3 scaffold_6500:25808816-25808968 - TTTATTTAATGGCACACCATTCCACGCTATCAATCCGATATTGGACGAAGGTGAGTC--------TGCGAATG--------CTAATCC-----------------------------------------TTGA-----TT---------TATAATCA---ATTA-TGTTCCTGA--A--------CAGATACTATCAAGTTCATGTTCGCGATATCCAAGCCGAAGTTGATATTCTGT
droGri2 scaffold_15245:4265445-4265609 + TCTAATGAATGGAACGCCCTTTCATTCTGTCAATCCAATGCTCGATGAAGGTTCTTC--------CGCAAATG--------A-ATCAC-----------------------------------------A--------CTTATATTGCATACAGTAA-T------TATTTTTTATTTTAAATGAATAGCAACTATAAAGTATGTTTATGAAATAACTAAACCCATGCTTATATTCTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CCTTTTAAATGGAACACCCTTCCACGCGGTTAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATAAG-----------------------------------------CC-------ATTA-------CATAACCA-CATAAA-TCTTCCTGATTT--------CAGCCACTTTGACACACATTTTCTCGATAACCAAACCAACTGTGATTTTCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................TCCCGTGTCGGACGAAGGTTGGTG--------A............................................................................................................................................................................25241.5083071000500070
..............................TAATCCCGTGTCGGACGAAGGTTGG.......................................................................................................................................................................................25222.00440321010010000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGTGA........27220.50410173000000021
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTTCCTGAT...............................................................26217.00340231000000010
....TTAAATGGAACACCCTTCCACGCGGT................................................................................................................................................................................................................26210.5021011300000007
..TTTTAAATGGAACACCCTTCCACGCGG.................................................................................................................................................................................................................27210.5021014420010000
..TTTTAAATGGAACACCCTTCCACGCGGT................................................................................................................................................................................................................28210.0020010210000007
.....TAAATGGAACACCCTTCCACGCGGT................................................................................................................................................................................................................25210.0020070000000013
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTTCCTGATT..............................................................2728.5017017000000000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGT..........2527.5015013200000000
..............................TAATCCCGTGTCGGACGAAGGTTGGTG--------A............................................................................................................................................................................2826.5013001000200010
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGTG.........2626.001209300000000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGTGATT......2926.001206600000000
......................................TGTCGGACGAAGGTTGGTG--------ATCAAAGG--------.............................................................................................................................................................2725.5011010000000010
..............................TAATCCCGTGTCGGACGAAGGTTGGTG--------.............................................................................................................................................................................2724.50902000020005
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGTGAT.......2824.00804000000004
........................................................................................................................................................................TCCTGATTT--------CAGCCACTTTGACACACA...................................2723.00606000000000
....TTAAATGGAACACCCTTCCACGCGG.................................................................................................................................................................................................................2523.00603020010000
...............................AATCCCGTGTCGGACGAAGGTTGG.......................................................................................................................................................................................2422.50505000000000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTG...........2422.50513100000000
....................................................................................................................................................................................................................TAACCAAACCAACTGTGATTTTCTGC2622.00404000000000
....................................................................................TAAG-----------------------------------------CC-------ATTA-------CATAACCA-CATAAA-TCT......................................................................2712.00202000000000
..............................................................................................................................................................................................................TCTCGATAACCAAACCAACTGTGATT......2622.00403100000000
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTTCCTGA................................................................2522.00404000000000
.............................TTAATCCCGTGTCGGACGAAGGTTGG.......................................................................................................................................................................................2622.00403100000000
..TTTTAAATGGAACACCCTTCCACG....................................................................................................................................................................................................................2421.50300000000003
........................................TCGGACGAAGGTTGGTG--------ATCAAAGG--------GC...........................................................................................................................................................2721.50301200000000
......................................................GTG--------ATCAAAGG--------GCATAAG-----------------------------------------CC-------ATTA-------CA.......................................................................................2611.00101000000000
....................TCCACGCGGTTAATCCCGTGTCGGACG...............................................................................................................................................................................................2721.00202000000000
.......................................................................................................................................................TAACCA-CATAAA-TCTTCCTGATTT--------CAGC.................................................2821.00201100000000
.................................TCCCGTGTCGGACGAAGGTTGGTG--------.............................................................................................................................................................................2421.00202000000000
....................................................................................TAAG-----------------------------------------CC-------ATTA-------CATAACCA-CATAAA-TC.......................................................................2611.00101000000000
.........TGGAACACCCTTCCACGCGGTTAATCC..........................................................................................................................................................................................................2721.00201100000000
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTTCCTG.................................................................2421.00202000000000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACT............2321.00202000000000
............................................................................................................................................................................................................TTTCTCGATAACCAAACCAACTGTGA........2621.00202000000000
.............................................................................................................................................................................................CACTTTGACACACATTTTCTCGATAACC.....................2821.00202000000000
.................................................................ATCAAAGG--------GCATAAG-----------------------------------------CC-------ATTA-------CATAAC...................................................................................2711.00101000000000
..............................................................................................................................................................................TTT--------CAGCCACTTTGACACACA...................................2120.50101000000000
..........................CGGTTAATCCCGTGTCGGACGAAGG...........................................................................................................................................................................................2520.50101000000000
..........GGAACACCCTTCCACGCGGT................................................................................................................................................................................................................2020.50101000000000
..............................TAATCCCGTGTCGGACGAAGGTTGGT......................................................................................................................................................................................2620.50101000000000
........................................................................................................................................................................TCCTGATTT--------CAGCCACTTTGACACA.....................................2520.50101000000000
................................................................................................................................................................TAAA-TCTTCCTGATTT--------CAGCCACTT............................................2520.50101000000000
.....TAAATGGAACACCCTTCCACGCGG.................................................................................................................................................................................................................2420.50101000000000
...............................................................................................................................................................................TT--------CAGCCACTTTGACACACATTTTCTCGA..........................2920.50101000000000
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTTCCTGATTT--------C....................................................2920.50101000000000
..TTTTAAATGGAACACCCTTCCACGCG..................................................................................................................................................................................................................2620.50101000000000
.....TAAATGGAACACCCTTCCACGCGGTTAA.............................................................................................................................................................................................................2820.50101000000000
................................................................................................................................................................TAAA-TCTTCCTGATTT--------CAGCCACT.............................................2420.50101000000000
....................................CGTGTCGGACGAAGGTTGGTG--------ATC..........................................................................................................................................................................2420.50101000000000
..........................................................................................................................................................................................AGCCACTTTGACACACATTTTCTCGA..........................2620.50101000000000
..............................................................................................................................................................................................................TCTCGATAACCAAACCAACT............2020.50101000000000
................................................................................................................................................................................................................TCGATAACCAAACCAACTGTGATTT.....2520.50101000000000
.....................................GTGTCGGACGAAGGTTGGT......................................................................................................................................................................................1920.50100000010000
......AAATGGAACACCCTTCCACGCGGT................................................................................................................................................................................................................2420.50101000000000
.................................TCCCGTGTCGGACGAAGGTTGGT......................................................................................................................................................................................2320.50101000000000
...........................GGTTAATCCCGTGTCGGAC................................................................................................................................................................................................1920.50101000000000
............................................................................................................................................TA-------CATAACCA-CATAAA-TCTT.....................................................................2020.50101000000000
.....................................................................................................................................................................TCTTCCTGATTT--------CAGCCACTTTGACA.......................................2620.50101000000000
...............................................................................................................................................................................TT--------CAGCCACTTTGACACACA...................................2020.50101000000000
...........................................................................................................................................TTA-------CATAACCA-CATAAA-TCTTCCTGAT...............................................................2720.50101000000000
................................................................................................................................................................................T--------CAGCCACTTTGACACACATTTTCTG............................2620.50101000000000
......AAATGGAACACCCTTCCACGCGG.................................................................................................................................................................................................................2320.50101000000000
.............................................................................................................................................A-------CATAACCA-CATAAA-TCTTCCTGATTT--------.....................................................2720.50101000000000
........................................................................................................................................................................TCCTGATTT--------CAGCCACTTTGACACACATT.................................2920.50101000000000
...TTTAAATGGAACACCCTTCCACGCGGT................................................................................................................................................................................................................2720.50101000000000
................................................................................................................................................................................................................TCGATAACCAAACCAACTG...........1920.50101000000000
...............................................................................................................................................................................TT--------CAGCCACTTTGACACACATTTTCC.............................2620.50100100000000
...........................................................................................................................................................................................................TTTTCTCGATAACCAAACCAACTGC..........2520.50110000000000
.......................................................................................................................................................................TTCCTGATTT--------CAGCCACTTTGACACACT...................................2820.50101000000000
...........................................................................................................................................TTA-------CATAACCA-CATAAA-TCTTCCTGATT..............................................................2820.50101000000000
.....................................................................................................................................................................TCTTCCTGATTT--------CAGCCACTTTGAC........................................2520.50101000000000
................................................................................................................................................................................................TTTGACACACATTTTCTCGATAACC.....................2520.50101000000000
................................ATCCCGTGTCGGACGAAG............................................................................................................................................................................................1820.50101000000000
.....................................GTGTCGGACGAAGGTTGG.......................................................................................................................................................................................1820.50101000000000
................................................................................................................................................................................T--------CAGCCACTTTGACACACATTTTCTCGAT.........................2920.50101000000000
......................................TGTCGGACGAAGGTTGGTG--------ATCAAT.......................................................................................................................................................................2520.50101000000000
..............CACCCTTCCACGCGGTTAATCCCGTG......................................................................................................................................................................................................2620.50100100000000
..........................................................................................................................................................................................AGCCACTTTGACACACATTTTCTCGAT.........................2720.50101000000000
.................................TCCCGTGTCGGACGAAGGTTGGTG--------AA...........................................................................................................................................................................2620.50101000000000
..............................TAATCCCGTGTCGGACGAAGGC..........................................................................................................................................................................................2220.50100100000000
........................CGCGGTTAATCCCGTGTCGGACGAAGG...........................................................................................................................................................................................2720.50101000000000
..................................CCCGTGTCGGACGAAGGTTGGTG--------A............................................................................................................................................................................2420.50101000000000
...TTTAAATGGAACACCCTTCCACGCGG.................................................................................................................................................................................................................2620.50101000000000
.............................................................................................................................................A-------CATAACCA-CATAAA-TCTTCCT..................................................................2220.50101000000000
........................................TCGGACGAAGGTTGGTG--------ATCAAAGG--------G............................................................................................................................................................2620.50100100000000
..TTTTAAATGGAACACCCTTCCACGCGGC................................................................................................................................................................................................................2820.50100100000000
droEre2
TCTTTTAAATGGAACCCCTTTCCACGCGGCTAGTCCCGTGTCGGACGAAGGTTAGTG--------ATGAAAGG--------GCATTGG-----------------------------------------A--------TTTA-------CA-AACCA-TATAAA-TCTTCCTGATTT--------CAGCCACCTTGACACACATTTTCTCGATAACGAAACCAACTATTATATTCTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............AACCCCTTTCCACGCGGCT...............................................................................................................................................................................................................1911.0010000100
.......................ACGCGGCTAGTCCCGTGTCGGACGAAG............................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................CGATAACGAAACCAACTATTAT.......2211.0011000000
.......AATGGAACCCCTTTCCACGCGGCT...............................................................................................................................................................................................................2411.0011000000
.............................CTAGTCCCGTGTCGGACGAAGC...........................................................................................................................................................................................2211.0010000010
..........GGAACCCCTTTCCACGCGGCTA..............................................................................................................................................................................................................2211.0011000000
.....TAAATGGAACCCCTTTCCACGCGGCT...............................................................................................................................................................................................................2611.0010001000
.................................TCCCGTGTCGGACGAAGC...........................................................................................................................................................................................1811.0011000000
......................................................................................................................................................................................................ACACATTTTCTCGATAACGAAACC................2411.0010100000
droSec2
TCTTTTAAATGGAACACCATTCCATGCGGTCAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATTCG-----------------------------------------A--------TTTA-------CATAACCA-TATTAA-TCTTCTTGACTT--------TAGCCACCTTGAAACACATTTTCTCGATAACCAAACCAACTGTGATATTCTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................GGTCAATCCCGTGTCGGACGA..............................................................................................................................................................................................2112.0020020
..............................................................................................................................................................................................................TCTCGATAACCAAACCAACTGT..........2211.0010010
................................................................................................................................................................................................................TCGATAACCAAACCAACTGTGAT.......2311.0010010
.....................CCATGCGGTCAATCCCGTGTCGGAC................................................................................................................................................................................................2511.0010010
.......................ATGCGGTCAATCCCGTGTCGGA.................................................................................................................................................................................................2211.0010010
.......................ATGCGGTCAATCCCGTGTCGGACGAA.............................................................................................................................................................................................2611.0010010
...........................GGTCAATCCCGTGTCGGAC................................................................................................................................................................................................1911.0010010
...........................GGTCAATCCCGTGTCGGACGAA.............................................................................................................................................................................................2211.0010010
...........................GGTCAATCCCGTGTCGGACGAAGC...........................................................................................................................................................................................2411.0010010
............................GTCAATCCCGTGTCGGACGAAGC...........................................................................................................................................................................................2311.0010010
..................ATTCCATGCGGTCAATCCC.........................................................................................................................................................................................................1911.0010010
.................................................................................................................................................................................................................CGATAACCAAACCAACTGT..........1911.0010010
.......................ATGCGGTCAATCCCGTGTCGGAC................................................................................................................................................................................................2311.0010010
.......................ATGCGGTCAATCCCGTGTCGGACGA..............................................................................................................................................................................................2511.0010010
............AACACCATTCCATGCGGT................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................ATTTTCTCGATAACCAAACCAACTGT..........2611.0010010
droSim2
TCTTTTAAATGGAACACCATTCCATGCGGTCAATCCCGTGTCGGACGAAGGTTGGTG--------ATCAAAGG--------GCATTCG-----------------------------------------A--------TTTA-------CATAACCA-TATTAA-TCTTCTTGACTT--------TAGCCACCTTGACACACATTTTCTCGATAACCAAACCAACTGTGATATTCTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................ACCAACTGTGATATTCTGC1911.00100100000000000000
.........................................................................................................................................................................................................................AAACCAACTGTGATATTCTG.2011.00100100000000000000
dm3
TTTGATGAATGGCACCCCATTCCATTCGGTTAATCCTGTGCTAGATGATGGTAAGTA--------CAGTAAAG--------TGGGAAA-----------------------------------------TTGT-----AT---------TAAAATGA-AATTAA-TTCAT-TTGTTA--------TAGCAACCTTGACGCATGTGTTTTCGATCACAAAGCCCACACTGATATTTTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................TTTCGATCACAAAGCCCACACTG.........2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000
...........................GGTTAATCCTGTGCTAGAT................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GTTTTCGATCACAAAGCCCACA............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCACAAAGCCCACACTGAT.......1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
...................................................................................................................................................................................................GACGCATGTGTTTTCGATCA.......................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AG--------TGGGAAA-----------------------------------------TTGT-----AT---------TAAAATGA-................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................CATTCGGTTAATCCTGTGCT....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTAATCCTGTGCTAGATGA..............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CACAAAGCCCACACTGAT.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATCCTGTGCTAGATGATGC...........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AAGCCCACACTGATATTTTGT2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................GACGCATGTGTTTTCGATCACAAA...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCATGTGTTTTCGATCACAA....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTGACGCATGTGTTTTCGATC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................ATTCGGTTAATCCTGTGCTAGATGATGCA..........................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CAAAGCCCACACTGATATTTTGT2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTCCATTCGGTTAATCCTGTGCTAGA.................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................TTCCATTCGGTTAATCCTGTGCTA...................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............CCCATTCCATTCGGTTAATCCT.........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CTTGACGCATGTGTTTTC............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGGTTAATCCTGTGCTAGA.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATCCTGTGCTAGATGATGCGT.........................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droEug1
TCTGTTGAATGGAACACCCTTTCATGCGGTGAATCCGGTGACGGACGAAGGTTGGTA--------ATCAGAAG--------TTCTTAT--------------------------------------------------TATA-------CAAAATTA-TTAATA-TTTTTTTGATTT--------TAGTTACTCTGACACACATTTTTTCGATAACCAAACCAACTGTTGTATTTTGCSizeHit CountTotal NormTotal
No Reads
droBia1
TCTCTTGAATGGAACAGCCTTCCACGCGGTAAATCCAGTCTCGGACGAAGGTGAGTT--------ATCACAAT-------ATTCAGTT--------------------------------------------------TTTG-------CATAGTCA-TCATTT-TATTTCTGACTT--------CAGCTACGTTGAGACACATTTTCTCGATAACCAAACCAACTATAATATTCTGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCTGTTGAATGGAACGCCTTTCCACGCGGTGAATCCGGTATCGGACGAAGGTTTGTG--------ATTAAAGG--------TCATTAG-----------------------------------------C--------TTGA------ATACAATCT-TAATAA-TATTTGTGATTT--------CAGCTACCTTGACACATATTTTCTCCATAACCAAACCAACTGTGATATTCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
CCTGCTGAATGCAACTCCCTTCCACGCGGTGAATCCTGTCTCGGACGAAGGTTAGTG--------ATCAATGG--------CTATTCTAACTAACATTAAGAA------------------------------------------------TAATTTTTA-----ACA-TTATACTT--------TAGCCACCCTGACTCACGTCTTCTCCATAACCAAACCAACTGTGATATTCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
CCTGCTGAATACAACTCCCTTTCACGCGGTGAATCCGGTGGCGGACGAAGGTAAGTC--------ATTTAAAG--------TTTTCAA--CCGA-------------TA-----------------TTAA--------CT----------AATATTTTAA-----ATA-ATATACTT--------CAGCTACCTTATCACACGTTTTCTCAATAACCAAACCTACTGTAATTTTCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
TCTTATGAATGGCACTCCCTTCCATTCGGTCAACCCGATGCTAGATGATGGTCAGTA--------TAGTC-------------------------TTTAAGGG-ATTGA-----------------G--CGATAAGGAACAA-------CA-AAACT-TACCAA-------TTTTTT--------CAGCCACTTTAACTCACGTGTTCTCGATTACCAAGCCAACGCTGATATTTTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTTTAAATGGGACACCCTTTCATGCCATCAATCCGGTAATGGATGAAGGTTGGTATTTATACGATCAAAGG--------TTATTTG--CA----------G-A-CTTC-----------------------------T---------TAC---AA-TTTATTATAA-TTTTTCTT--------TAGCCACCATGACCCACGTTTTTTCCATAACCAAGCCAAGAATTATATTCTGCSizeHit CountTotal NormTotal
No Reads
droAna3
TCTGATGAATGCAACACCCTTCCATGCGGTTAATCCTGTGCTCGATCAAGGTAAGTC--------AGGAG-------------------------CTAAAGAG-ATCTC-----------------TTGG--------TT-A-------GTTAATTA-TGTGTT-TTATTTGTGACC--------CAGGTACTCTGACGCATGTGTTCTCTATCACCAAGCCAACTCTGATATTCTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................ATGTGTTCTCTATCACCAAGC.................2113.003300000
............................................................................................................................................................................................................GTTCTCTATCACCAAGCCAACTCT..........2413.003300000
................................................................................................................................................................................................................TCTATCACCAAGCCAACTCT..........2012.002200000
..................CTTCCATGCGGTTAATCCTGTGCTC...................................................................................................................................................................................................2512.002100010
............................................................................................................................................................................................GTACTCTGACGCATGTGTTCT.............................2112.002200000
............................................................................................................................................................................................................GTTCTCTATCACCAAGCCA...............1912.002200000
............................................................................................................................................................................................................GTTCTCTATCACCAAGCCAACTCTGA........2612.002200000
............................................................................................................................................................................................................GTTCTCTATCACCAAGCCAACTCTG.........2512.002200000
...............ACCCTTCCATGCGGTTAATCCTGTGC.....................................................................................................................................................................................................2612.002200000
..........................................................................................................................................................................................AGGTACTCTGACGCATGT..................................1811.001100000
............................GTTAATCCTGTGCTCGATCAAGGTACT.......................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................CTATCACCAAGCCAACTCTGA........2111.001100000
..............CACCCTTCCATGCGGTTAATCCTGTGCTC...................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................................................CTCTATCACCAAGCCAACTCTGA........2311.001100000
........................................................................................................................................................................................................................CAAGCCAACTCTGATATTCTGT2211.001100000
..........................................................................................................................................................................................................GTGTTCTCTATCACCAAGCC................2011.001100000
.................................................................................................................................................................................................................CTATCACCAAGCCAACTCT..........1911.001100000
..................................................................................................................................................................................................................TATCACCAAGCCAACTCTG.........1911.001100000
...........................................................................................................................................................................................GGTACTCTGACGCATGTGTTCTCG...........................2411.001100000
...............ACCCTTCCATGCGGTTAATCCTGTGCT....................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................GTGTTCTCTATCACCAAGCCAACTCTGAT.......2911.001100000
.................................................................................................................................................................................................................CTATCACCAAGCCAACTCTGATATTCTGT2911.001100000
...............................................................................................................................................................................................CTCTGACGCATGTGTTCTCTATCACCA....................2711.001100000
..................................CCTGTGCTCGATCAAGGTACT.......................................................................................................................................................................................2111.001100000
..............................TAATCCTGTGCTCGATCAAGGTACT.......................................................................................................................................................................................2511.001000010
...........................GGTTAATCCTGTGCTCGATCAAGGTACT.......................................................................................................................................................................................2811.001100000
...................TTCCATGCGGTTAATCCTGTGCTC...................................................................................................................................................................................................2411.001100000
..............CACCCTTCCATGCGGTTAATCCTGTGC.....................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................GCATGTGTTCTCTATCACCAAGCC................2411.001100000
...............................................................................................................................................................................................................CTCTATCACCAAGCCAACTCTGAT.......2411.001100000
...............ACCCTTCCATGCGGTTAATCCTGTGCTC...................................................................................................................................................................................................2811.001100000
...............................AATCCTGTGCTCGATCAAGG...........................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................CTGACGCATGTGTTCTCTATCACCA....................2511.001100000
.......................ATGCGGTTAATCCTGTGCTCG..................................................................................................................................................................................................2111.001100000
...............................AATCCTGTGCTCGATCAAG............................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................GGTACTCTGACGCATGTGTT...............................2011.001100000
........................................................................................................................................................................................................ATGTGTTCTCTATCACCAAGCCAACTCT..........2811.001100000
.........................GCGGTTAATCCTGTGCTCGA.................................................................................................................................................................................................2011.001000010
..............................................................................................................................................................................................ACTCTGACGCATGTGTTCTCTATCACCA....................2811.001100000
droBip1
TCTGATGAATGCCACACCCTTTCACGCAGTGAATCCTGTACTCGATCAAGGTGAGTC--------CGGAG-----------GTATGGA--------------G-GTCTC-----------------TTGG--------TT----------AGAATAA-TGGATT-ACTTTTGCGGTA--------TAGGTACATTGACGCATGTCTTCTCGATCACCAAGCCAACTCTGATATTCTGTSizeHit CountTotal NormTotal
No Reads
dp5
CCTAATGAATGGAACACCATTCCACTCGGTTAATCCGGATCAAGACGAAGGTTGGTA--------CTGCC-------------------------ATCAAGAGTATCGCCTAACAATTTCTGAGTA------------------------ATAAGTA-TGGGAA-TCT-G-TTGACG--------CAGCTACCGTAACCCATGTGTTCTCGATAACCAATCCCAGTCTGATATTCTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........GGAACACCATTCCACTCGGT................................................................................................................................................................................................................2020.5010100000000
.CTAATGAATGGAACACCATTCCACTC...................................................................................................................................................................................................................2620.5010100000000
.CTAATGAATGGAACACCATT.........................................................................................................................................................................................................................2020.5010100000000
.......AATGGAACACCATTCCACTCG..................................................................................................................................................................................................................2120.5010100000000
droPer2
CCTAATGAATGGAACACCATTCCACTCGGTTAATCCGGATCAAGACGAAGGTTGGTA--------CTGCC-------------------------ATCAAGAGTATCGCTTAACAATTTCTGAGTA------------------------ATAAGTA-TGGGAA-TCT-G-TTGACG--------CAGCTACCGTAACCCATGTGTTCTCGATAACCAATCCAAGTCTGATATTCTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GTTAATCCGGATCAAGAC................................................................................................................................................................................................1814.004400000
droWil2
CCTCATGAATGGGACTCCATTTCACGCAGTGAATCCAGTACTTGACGAAGGTTTGTC--------CACTTTTAGTCCAATGTGAATAT--------------------T--------------------T-TA-----TT---------TGAAAACA---TATG-TATTTCTGG-AT--------TAGACACCATTCGCCATGTGTTGTCAATTACTAAACCGAATCTAATATTCTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........ATGGGACTCCATTTCACGCAGT................................................................................................................................................................................................................2215.00501400
........ATGGGACTCCATTTCACGCAGTGAATCC..........................................................................................................................................................................................................2812.00202000
................CCATTTCACGCAGTGAATCCA.........................................................................................................................................................................................................2111.00100100
...........GGACTCCATTTCACGCAGTGA..............................................................................................................................................................................................................2111.00101000
.............................................................................................................................................................................................CACCATTCGCCATGTGTTGTC............................2111.00100100
..............................GAATCCAGTACTTGACGAAGA...........................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................GTTGTCAATTACTAAACCG...............1911.00101000
.....................TCACGCAGTGAATCCAGTACTTGA.................................................................................................................................................................................................2411.00101000
.................................................................................................................................................................................................ATTCGCCATGTGTTGTCAAT.........................2011.00101000
......................CACGCAGTGAATCCAGTACTTGAC................................................................................................................................................................................................2411.00101000
................................................................................................................................................................................................CATTCGCCATGTGTTGTCAATT........................2211.00100100
..............................................................................................................................................................................................ACCATTCGCCATGTGTTGTCAATTACT.....................2711.00101000
.........TGGGACTCCATTTCACGCAGTGAATCC..........................................................................................................................................................................................................2711.00101000
............................................................................................................................................................................................................GTTGTCAATTACTAAACCGA..............2011.00101000
.............................................................................................................................................................................................CACCATTCGCCATGTGTTGTCAATT........................2511.00100100
..........GGGACTCCATTTCACGCAGT................................................................................................................................................................................................................2011.00101000
................................ATCCAGTACTTGACGAAGACA.........................................................................................................................................................................................2120.50100100
.......................................ACTTGACGAAGGTTTGTC--------CA...........................................................................................................................................................................2020.50100100
droVir3
TCTAATGAATTGCACACCCTTTCATTCTGTGAATCCAATGCTCGATGAAGGTTTGTC--------ACCCATAG--------ATTTCAC--------------------------------------TTGG--------TTGC-------CT-CCC---TCAGTA-GAATCTTATTTA--------CAGCGACCATTCAGCATGTTTATGAAATAACTAAGCCAATGCTTATATTCTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................CGACCATTCAGCATGTTTATGAA...........................2312.002001000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GCCAATGCTTATATTCTGC1912.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTATGAAATAACTAAGCCAATGC...........2312.002002000000000000000000000000000000000000000000000000000000000000
.CTAATGAATTGCACACCCTTTCATTCTGT................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TTCAGCATGTTTATGAAATAACTA....................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGCGACCATTCAGCATGTTTATGA............................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GAAATAACTAAGCCAATGCT..........2011.001001000000000000000000000000000000000000000000000000000000000000
......GAATTGCACACCCTTTCATTCTG.................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGCGACCATTCAGCATGTTTATGAA...........................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GACCATTCAGCATGTTTATGAAATAAC......................2711.001001000000000000000000000000000000000000000000000000000000000000
.CTAATGAATTGCACACCCTT.........................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GTTTATGAAATAACTAAGCC................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACCATTCAGCATGTTTATG.............................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATGAAATAACTAAGCCAATGCT..........2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TGTTTATGAAATAACTAAGC.................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATTCAGCATGTTTATGAAATA........................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATGAAATAACTAAGCCAATGC...........2111.001001000000000000000000000000000000000000000000000000000000000000
......................CATTCTGTGAATCCAATGCTC...................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........TTGCACACCCTTTCATTCTGTG...............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GAAATAACTAAGCCAATGCTT.........2111.001001000000000000000000000000000000000000000000000000000000000000
.......................ATTCTGTGAATCCAATGCTCGAT................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..........................CTGTGAATCCAATGCTCGAT................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GACCATTCAGCATGTTTAT..............................1911.001000000000000000001000000000000000000000000000000000000000000000
..TAATGAATTGCACACCCTTTC.......................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.................CCTTTCATTCTGTGAATCCAATGCTCGAT................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......AATTGCACACCCTTTCATTCTGTGA..............................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTATGAAATAACTAAGCCAATGCTTA........2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GACCATTCAGCATGTTTATGAAAT.........................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CCATTCAGCATGTTTATGAAAT.........................2211.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
TTTATTTAATGGCACACCATTCCACGCTATCAATCCGATATTGGACGAAGGTGAGTC--------TGCGAATG--------CTAATCC-----------------------------------------TTGA-----TT---------TATAATCA---ATTA-TGTTCCTGA--A--------CAGATACTATCAAGTTCATGTTCGCGATATCCAAGCCGAAGTTGATATTCTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCTAATGAATGGAACGCCCTTTCATTCTGTCAATCCAATGCTCGATGAAGGTTCTTC--------CGCAAATG--------A-ATCAC-----------------------------------------A--------CTTATATTGCATACAGTAA-T------TATTTTTTATTTTAAATGAATAGCAACTATAAAGTATGTTTATGAAATAACTAAACCCATGCTTATATTCTGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........GAACGCCCTTTCATTCTGTCAATC...........................................................................................................................................................................................................2420.50110

Generated: 05/17/2015 at 10:43 PM