ID:

dya_5

 Coordinate:

3R:25064567-25064634 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.1 -38.8 -38.7

Flybase annnotation

Antisense to intron [Dyak\GE23609-in]; utr3 [utr3_minus_8785]

No Repeatable elements found

Sense Strand Reads

ACTAACTAGGAGTTCTAAAAAGGATATTCGAATTGGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAGGCGGCCAGGAAAAAAGGCGAGAAAA

***********************************.((((((((.((.((.((.(((((((((.((((((((((((((.......))))))..)))))))))).))))))).)).)).)).))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V058

head

 V052

head

 M056

embryo

 M026

head

 V046

embryo

 M043

female body

 V120

male body		 SRR1275484

Male prepupae		 SRR1275488

Male larvae		 SRR1275486

Male prepupae
..................................................ATATTGTCCTGTCACAGCAGT................................................................................................. 21 0 1 48530.00 48530 25139 17480 1208 1441 912 1180 1159 5 4 2
..................................................ATATTGTCCTGTCACAGCAGTA................................................................................................ 22 0 1 20973.00 20973 1470 1115 12913 977 3804 624 34 25 9 2
..................................................ATATTGTCCTGTCACAGCAG.................................................................................................. 20 0 1 7246.00 7246 2068 1789 57 2818 10 474 24 5 1 0
..................................................AGATTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 1935.00 1935 2 3 1923 0 7 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTT................................................................................................ 22 1 1 1269.00 1269 719 469 8 17 18 31 7 0 0 0
..................................................ATATTGTCCTGTCACAGCCGT................................................................................................. 21 1 1 774.00 774 581 177 0 4 12 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTAA............................................................................................... 23 1 1 693.00 693 332 264 14 5 21 54 3 0 0 0
..................................................ATATTGTCCTGTCACAGCAGC................................................................................................. 21 1 1 683.00 683 184 36 292 170 0 0 1 0 0 0
..................................................ATATTGTCCTGTCACAGCA................................................................................................... 19 0 1 677.00 677 373 217 0 60 2 22 3 0 0 0
..................................................ATATTGTCCTGTCACATCAGT................................................................................................. 21 1 1 393.00 393 278 108 0 1 2 0 4 0 0 0
..................................................ATATTGTCCTGTCACCGCAGT................................................................................................. 21 1 1 368.00 368 306 62 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGG................................................................................................. 21 1 1 351.00 351 107 66 6 167 4 0 1 0 0 0
..................................................AGATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 246.00 246 54 16 176 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCATT................................................................................................. 21 1 1 240.00 240 196 39 5 0 0 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCAGT................................................................................................. 21 1 1 184.00 184 151 24 2 2 4 0 1 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTC................................................................................................ 22 1 1 169.00 169 52 30 66 6 12 3 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATTAACA................................................... 22 0 1 164.00 164 6 2 84 22 35 7 0 6 2 0
..................................................ATATTGTCCTGTCACAGCGGT................................................................................................. 21 1 1 159.00 159 125 27 2 0 3 0 2 0 0 0
..................................................ATATTGTCCTTTCACAGCAGT................................................................................................. 21 1 1 151.00 151 84 61 1 3 1 0 1 0 0 0
..................................................ATACTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 150.00 150 1 0 146 0 3 0 0 0 0 0
..................................................ATATTGTCCTGTCCCAGCAGT................................................................................................. 21 1 1 149.00 149 124 24 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTAT............................................................................................... 23 0 1 145.00 145 28 23 21 22 4 46 1 0 0 0
..................................................ATATTGTCCTGCCACAGCAGT................................................................................................. 21 1 1 136.00 136 92 39 1 0 3 1 0 0 0 0
..................................................ATATTGTCCTGGCACAGCAGT................................................................................................. 21 1 1 136.00 136 96 39 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCTGT................................................................................................. 21 1 1 131.00 131 107 21 1 1 1 0 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATTAAC.................................................... 21 0 1 129.00 129 1 1 108 6 13 0 0 0 0 0
..................................................ATATTGCCCTGTCACAGCAGT................................................................................................. 21 1 1 128.00 128 97 27 0 2 1 0 1 0 0 0
..................................................ATAGTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 125.00 125 5 0 118 0 2 0 0 0 0 0
..................................................TTATTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 112.00 112 3 0 108 0 1 0 0 0 0 0
...................................................TATTGTCCTGTCACAGCAGT................................................................................................. 20 0 1 107.00 107 14 12 4 0 0 77 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGA................................................................................................. 21 1 1 107.00 107 77 20 1 4 1 4 0 0 0 0
..................................................ATATTGTCCTGTCACACCAGT................................................................................................. 21 1 1 99.00 99 84 15 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCG.................................................................................................. 20 1 1 99.00 99 58 20 0 21 0 0 0 0 0 0
..................................................ATGTTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 90.00 90 61 27 0 0 1 1 0 0 0 0
..................................................ATATTGTACTGTCACAGCAGT................................................................................................. 21 1 1 86.00 86 59 17 9 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAC.................................................................................................. 20 1 1 85.00 85 6 1 2 76 0 0 0 0 0 0
..................................................ATAGTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 82.00 82 47 22 13 0 0 0 0 0 0 0
...................................................TATTGTCCTGTCACAGCAGTA................................................................................................ 21 0 1 79.00 79 5 2 23 1 5 43 0 0 0 0
..................................................ATATTGTCCTGTCACAGC.................................................................................................... 18 0 1 75.00 75 4 3 5 60 0 3 0 0 0 0
..................................................ATAATGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 73.00 73 1 0 69 1 2 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCACT................................................................................................. 21 1 1 72.00 72 48 23 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGGA................................................................................................ 22 1 1 71.00 71 11 1 52 0 7 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGTA................................................................................................ 22 1 1 70.00 70 28 8 0 2 32 0 0 0 0 0
..................................................ATATTGTCGTGTCACAGCAGT................................................................................................. 21 1 1 69.00 69 5 5 0 0 0 59 0 0 0 0
..................................................ATATTTTCCTGTCACAGCAGTA................................................................................................ 22 1 1 62.00 62 0 0 61 0 1 0 0 0 0 0
..................................................ATACTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 60.00 60 29 21 8 0 1 0 1 0 0 0
..................................................ATATTGTCCTGTCAAAGCAGT................................................................................................. 21 1 1 60.00 60 46 7 4 0 2 0 1 0 0 0
..................................................ATATTGTCCTGTCACGGCAGT................................................................................................. 21 1 1 59.00 59 45 14 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAACAGT................................................................................................. 21 1 1 58.00 58 35 21 0 1 0 0 1 0 0 0
..................................................ATATTGTCCCGTCACAGCAGT................................................................................................. 21 1 1 57.00 57 36 17 2 1 0 1 0 0 0 0
..................................................ATATCGTCCTGTCACAGCAGT................................................................................................. 21 1 1 56.00 56 25 26 1 0 0 1 3 0 0 0
..................................................ATATTGTCCTGCCACAGCAGTA................................................................................................ 22 1 1 56.00 56 2 6 39 2 7 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGAAGT................................................................................................. 21 1 1 55.00 55 42 12 0 0 0 0 1 0 0 0
..................................................ATATTGTCCTGTCGCAGCAGT................................................................................................. 21 1 1 54.00 54 29 21 1 1 1 0 1 0 0 0
..................................................ATATTGTCTTGTCACAGCAGT................................................................................................. 21 1 1 54.00 54 29 10 0 1 1 13 0 0 0 0
..................................................ATATTGTCCTGTTACAGCAGT................................................................................................. 21 1 1 52.00 52 22 28 0 1 0 0 1 0 0 0
..................................................ATATTGTCCTATCACAGCAGT................................................................................................. 21 1 1 52.00 52 31 16 1 0 2 0 2 0 0 0
..................................................ATATTATCCTGTCACAGCAGT................................................................................................. 21 1 1 51.00 51 28 20 1 2 0 0 0 0 0 0
..................................................ATATTGTCATGTCACAGCAGT................................................................................................. 21 1 1 51.00 51 24 9 3 1 2 12 0 0 0 0
..................................................ATATTGTCCTGTAACAGCAGT................................................................................................. 21 1 1 51.00 51 34 14 3 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCAAAGCAGTA................................................................................................ 22 1 1 51.00 51 5 1 41 0 4 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCCGT................................................................................................. 21 2 1 50.00 50 41 8 0 0 1 0 0 0 0 0
..................................................ACATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 50.00 50 29 18 2 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTCA............................................................................................... 23 2 1 48.00 48 20 24 0 0 0 1 3 0 0 0
..................................................ATCTTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 48.00 48 35 8 4 0 0 0 1 0 0 0
..................................................ATATTGTCCTCTCACAGCAGT................................................................................................. 21 1 1 48.00 48 33 13 0 0 1 0 1 0 0 0
..................................................ATATTCTCCTGTCACAGCAGT................................................................................................. 21 1 1 48.00 48 34 12 0 0 1 0 1 0 0 0
..................................................ATATTGTCCTGTCACATCAG.................................................................................................. 20 1 1 48.00 48 31 12 0 5 0 0 0 0 0 0
.................................................CATATTGTCCTGTCACAGCAGTA................................................................................................ 23 1 1 47.00 47 2 2 41 0 1 1 0 0 0 0
..................................................ATATTGTCATGTCACAGCAGTA................................................................................................ 22 1 1 47.00 47 5 1 21 0 14 6 0 0 0 0
..................................................ATATTGTACTGTCACAGCAGTA................................................................................................ 22 1 1 46.00 46 2 0 40 0 4 0 0 0 0 0
..................................................ATATTGTCCTGTCACTGCAGT................................................................................................. 21 1 1 46.00 46 38 7 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTGT............................................................................................... 23 1 1 46.00 46 25 18 0 1 0 0 2 0 0 0
..................................................ATATTGGCCTGTCACAGCAGTA................................................................................................ 22 1 1 45.00 45 11 1 24 0 9 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAT.................................................................................................. 20 1 1 45.00 45 33 10 0 2 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCAGTA................................................................................................ 22 1 1 44.00 44 19 14 6 0 4 0 0 1 0 0
..................................................ATATTGACCTGTCACAGCAGT................................................................................................. 21 1 1 44.00 44 36 4 1 0 3 0 0 0 0 0
..................................................ATATTGTCCTGTAACAGCAGTA................................................................................................ 22 1 1 44.00 44 2 1 38 0 3 0 0 0 0 0
..................................................ATCTTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 43.00 43 1 1 39 0 2 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTG................................................................................................ 22 1 1 43.00 43 11 8 4 7 11 2 0 0 0 0
..................................................ATATTGTCCTGTCATAGCAGT................................................................................................. 21 1 1 43.00 43 26 16 0 0 0 0 1 0 0 0
..................................................ATATTGTCCTGTCACATCATT................................................................................................. 21 2 1 42.00 42 34 8 0 0 0 0 0 0 0 0
..................................................GTATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 41.00 41 18 17 2 0 3 1 0 0 0 0
..................................................AGATTGTCCTGTCACAGCAGC................................................................................................. 21 2 1 40.00 40 1 1 38 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTAAA.............................................................................................. 24 2 1 38.00 38 19 11 0 3 0 4 1 0 0 0
..................................................ACATTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 38.00 38 1 1 30 0 6 0 0 0 0 0
..................................................TGATTGTCCTGTCACAGCAGTA................................................................................................ 22 2 1 38.00 38 0 0 38 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGTAGT................................................................................................. 21 1 1 37.00 37 22 10 2 0 1 0 2 0 0 0
.................................................CATATTGTCCTGTCACAGCAGT................................................................................................. 22 1 1 36.00 36 11 10 8 0 2 4 1 0 0 0
..................................................ATATTGTCCGGTCACAGCAGT................................................................................................. 21 1 1 36.00 36 23 12 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCTCAGCAGT................................................................................................. 21 1 1 35.00 35 30 4 1 0 0 0 0 0 0 0
..................................................TTATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 34.00 34 11 9 14 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTAC............................................................................................... 23 1 1 34.00 34 10 3 12 3 1 5 0 0 0 0
..................................................ATATTGCCCTGTCACAGCAGTA................................................................................................ 22 1 1 34.00 34 4 1 14 4 9 2 0 0 0 0
..................................................ATATTTTCCTGTCACAGCAGT................................................................................................. 21 1 1 34.00 34 23 6 4 0 0 1 0 0 0 0
...................................................TATTGTCCTGTCACAGCAG.................................................................................................. 19 0 1 33.00 33 0 1 0 2 0 30 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTTT............................................................................................... 23 1 1 30.00 30 11 13 0 1 0 5 0 0 0 0
..................................................ATATTGTCCTGTCACTGCAGTA................................................................................................ 22 1 1 29.00 29 0 1 27 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGTAGTA................................................................................................ 22 1 1 29.00 29 2 0 21 0 6 0 0 0 0 0
..................................................ATATTGTCCTGTCCCAGCCGT................................................................................................. 21 2 1 27.00 27 25 2 0 0 0 0 0 0 0 0
..................................................AAATTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 27.00 27 2 0 24 0 0 1 0 0 0 0
..................................................ATATTGTCCTGTCACAGCGG.................................................................................................. 20 1 1 26.00 26 9 5 0 12 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTAG............................................................................................... 23 1 1 26.00 26 12 4 0 2 1 7 0 0 0 0
..................................................ATATTGTCCTGTCACAGCATTA................................................................................................ 22 1 1 26.00 26 12 5 9 0 0 0 0 0 0 0
....................................................ATTGTCCTGTCACAGCAGT................................................................................................. 19 0 1 26.00 26 5 6 1 1 0 12 1 0 0 0
..................................................ATATTGTCGTGTCACAGCAGTA................................................................................................ 22 1 1 25.00 25 0 1 0 0 1 23 0 0 0 0
..................................................ATATTGTGCTGTCACAGCAGT................................................................................................. 21 1 1 25.00 25 15 9 1 0 0 0 0 0 0 0
.....................................................................................................................TTGTTGAGCGTCATTAGCAAC.............................. 21 0 1 25.00 25 2 0 3 20 0 0 0 0 0 0
....................................................ATTGTCCTGTCACAGCAGTA................................................................................................ 20 0 1 25.00 25 0 1 19 0 1 4 0 0 0 0
..................................................ATATTGTCGTGTCACAGCAG.................................................................................................. 20 1 1 24.00 24 0 0 0 0 0 24 0 0 0 0
..................................................ATATTGTCCTGTCGCAGCAGTA................................................................................................ 22 1 1 24.00 24 4 2 14 1 3 0 0 0 0 0
..................................................ATATTGTCCTGACACAGCAGT................................................................................................. 21 1 1 24.00 24 14 7 0 0 3 0 0 0 0 0
..................................................GTATTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 23.00 23 4 2 10 0 4 3 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGCA................................................................................................ 22 1 1 23.00 23 9 3 5 0 5 1 0 0 0 0
..................................................ATATTGTCCTGTCACAGCGGTA................................................................................................ 22 1 1 22.00 22 4 4 9 0 5 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGC................................................................................................. 21 2 1 22.00 22 21 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACAGCAGG................................................................................................. 21 2 1 22.00 22 15 6 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAG.................................................................................................. 20 1 1 22.00 22 17 5 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGTT................................................................................................ 22 2 1 21.00 21 15 6 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAA.................................................................................................. 20 1 1 21.00 21 12 6 2 0 0 1 0 0 0 0
..................................................ATATGGTCCTGTCACAGCAGT................................................................................................. 21 1 1 20.00 20 18 1 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCTGTA................................................................................................ 22 1 1 20.00 20 7 1 7 0 5 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGTA................................................................................................ 22 1 1 20.00 20 12 1 0 0 7 0 0 0 0 0
..................................................ATATTGTCCCGTCACAGCAGTA................................................................................................ 22 1 1 20.00 20 1 2 13 2 2 0 0 0 0 0
..................................................ATATTGTCCTGGCACAGCAGTA................................................................................................ 22 1 1 20.00 20 10 2 1 0 7 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAAT................................................................................................. 21 1 1 20.00 20 10 10 0 0 0 0 0 0 0 0
..................................................AGACTGTCCTGTCACAGCAGTA................................................................................................ 22 2 1 20.00 20 0 0 20 0 0 0 0 0 0 0
..................................................CTATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 20.00 20 6 13 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTTTCACAGCAG.................................................................................................. 20 1 1 18.00 18 9 6 0 3 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACGGCAGTA................................................................................................ 22 1 1 18.00 18 5 0 10 0 2 0 1 0 0 0
........................................................................TTGTAACACTATATTATAGCTTA......................................................................... 23 0 1 18.00 18 2 0 4 0 12 0 0 0 0 0
..................................................ATATTGTTCTGTCACAGCAGT................................................................................................. 21 1 1 18.00 18 10 5 1 1 1 0 0 0 0 0
..................................................AGAGTGTCCTGTCACAGCAGTA................................................................................................ 22 2 1 18.00 18 0 0 18 0 0 0 0 0 0 0
..................................................ATATCGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 17.00 17 4 1 6 0 6 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCAGC................................................................................................. 21 2 1 17.00 17 10 5 2 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACACCAG.................................................................................................. 20 1 1 16.00 16 10 4 0 2 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGCT................................................................................................ 22 2 1 16.00 16 10 5 0 0 1 0 0 0 0 0
..................................................AGATTGTCCTGTCAAAGCAGTA................................................................................................ 22 2 1 16.00 16 0 0 16 0 0 0 0 0 0 0
..................................................ATAATGTCCTGTCACAGCAGT................................................................................................. 21 1 1 16.00 16 4 5 5 1 0 0 0 0 1 0
..................................................ATTTTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 15.00 15 12 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCGGT................................................................................................. 21 2 1 15.00 15 14 0 0 0 1 0 0 0 0 0
..................................................AGAATGTCCTGTCACAGCAGTA................................................................................................ 22 2 1 15.00 15 0 0 15 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCC................................................................................................... 19 1 1 15.00 15 12 2 0 1 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACAGCAG.................................................................................................. 20 1 1 15.00 15 4 3 8 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCATAGCAGTA................................................................................................ 22 1 1 15.00 15 0 2 8 0 5 0 0 0 0 0
..................................................ATGTTGTCCTGTCACAGCGGT................................................................................................. 21 2 1 15.00 15 14 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTTACAGCAGTA................................................................................................ 22 1 1 15.00 15 1 3 8 0 2 1 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTCT............................................................................................... 23 1 1 14.00 14 12 1 0 0 0 1 0 0 0 0
..................................................AGATTGTCCTGTCACAGCGGT................................................................................................. 21 2 1 14.00 14 13 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTTACATCAGT................................................................................................. 21 2 1 14.00 14 8 6 0 0 0 0 0 0 0 0
..................................................ATATTGGCCTGGCACAGCAGT................................................................................................. 21 2 1 14.00 14 12 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAACAGTA................................................................................................ 22 1 1 14.00 14 1 2 6 0 4 1 0 0 0 0
...............................................................................................CGGCTGGGTCGGGGCATTAAC.................................................... 21 1 1 13.00 13 0 0 13 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCAGTC................................................................................................ 22 2 1 13.00 13 3 0 10 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCACTA................................................................................................ 22 1 1 13.00 13 5 2 3 0 3 0 0 0 0 0
..................................................ATATTGTCCTTTCACAGCAGTA................................................................................................ 22 1 1 13.00 13 2 3 6 0 2 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCAGG................................................................................................. 21 2 1 13.00 13 8 4 0 1 0 0 0 0 0 0
..................................................ATATTGTCTTGTCACAGCAGTA................................................................................................ 22 1 1 13.00 13 1 1 4 0 2 5 0 0 0 0
..................................................ATATTGTCCTGTTACAGCGGT................................................................................................. 21 2 1 13.00 13 10 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTATCACAGCAGTA................................................................................................ 22 1 1 13.00 13 0 0 8 0 5 0 0 0 0 0
.....................................................................................................................TTGTTGAGCGTCATTAGC................................. 18 0 1 13.00 13 1 1 1 10 0 0 0 0 0 0
..................................................AGATTGTACTGTCACAGCAGTA................................................................................................ 22 2 1 12.00 12 0 0 12 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCAGTT................................................................................................ 22 2 1 12.00 12 7 5 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACACCAGTA................................................................................................ 22 1 1 12.00 12 5 1 5 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCCCAGCAG.................................................................................................. 20 1 1 12.00 12 11 1 0 0 0 0 0 0 0 0
..................................................ATATTATCCTGTCACAGCAGTA................................................................................................ 22 1 1 12.00 12 2 0 7 1 2 0 0 0 0 0
..................................................ATATTGTTCTGTCACAGCAGTA................................................................................................ 22 1 1 12.00 12 0 1 5 0 6 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGGAGT................................................................................................. 21 1 1 12.00 12 6 4 0 2 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACAGCAG.................................................................................................. 20 1 1 12.00 12 7 5 0 0 0 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCAG.................................................................................................. 20 1 1 12.00 12 5 5 1 1 0 0 0 0 0 0
..................................................AAATTGTCCTGTCACAGCAGT................................................................................................. 21 1 1 12.00 12 9 2 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCCCCGCAGT................................................................................................. 21 2 1 11.00 11 9 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGCCACAGCAG.................................................................................................. 20 1 1 11.00 11 7 1 0 3 0 0 0 0 0 0
..................................................ATAGTGTCCTGGCACAGCAGT................................................................................................. 21 2 1 11.00 11 5 6 0 0 0 0 0 0 0 0
...............................................................................................CGGCTGGGTCGGGGCATTAACA................................................... 22 1 1 11.00 11 0 0 11 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAATA................................................................................................ 22 1 1 11.00 11 1 1 4 0 4 0 1 0 0 0
..................................................ATATTGTCCTGTCACCTCAGT................................................................................................. 21 2 1 11.00 11 11 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGGT................................................................................................ 22 2 1 11.00 11 7 4 0 0 0 0 0 0 0 0
..............................................GATCATATTGTCCTGTCACAGCAGTA................................................................................................ 26 3 1 11.00 11 0 0 11 0 0 0 0 0 0 0
..................................................ATGTTGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 11.00 11 4 1 5 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCCCAGCAGC................................................................................................. 21 2 1 11.00 11 11 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCGGT................................................................................................. 21 2 1 11.00 11 11 0 0 0 0 0 0 0 0 0
..................................................ATATTGCCCTGTCACAGCCGT................................................................................................. 21 2 1 11.00 11 9 2 0 0 0 0 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATTAA..................................................... 20 0 1 10.00 10 0 0 8 0 1 0 0 1 0 0
..................................................ATATTGTCATGTCACAGCAG.................................................................................................. 20 1 1 10.00 10 2 0 0 0 0 8 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATT....................................................... 18 0 1 10.00 10 2 1 2 5 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCGGTT................................................................................................ 22 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACGGCAG.................................................................................................. 20 1 1 10.00 10 4 2 0 3 0 1 0 0 0 0
..................................................ATATTGCCCTGTCACAGCAG.................................................................................................. 20 1 1 10.00 10 6 2 0 2 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGG................................................................................................. 21 2 1 10.00 10 9 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCAGAGCAGT................................................................................................. 21 1 1 10.00 10 9 1 0 0 0 0 0 0 0 0
..................................................ATATAGTCCTGTCACAGCAGT................................................................................................. 21 1 1 10.00 10 7 3 0 0 0 0 0 0 0 0
..................................................ATCTTGTCCTGTCACAGCCGT................................................................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
..................................................ATCTTGTCCTGTCACCGCAGT................................................................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
..................................................ATGTTGTCCTGTCACAGCAG.................................................................................................. 20 1 1 10.00 10 5 1 0 4 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTGA............................................................................................... 23 2 1 10.00 10 3 1 0 3 1 2 0 0 0 0
..................................................ATATTGTCCTGTCACACCAGG................................................................................................. 21 2 1 9.00 9 6 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCAAAGCAG.................................................................................................. 20 1 1 9.00 9 6 3 0 0 0 0 0 0 0 0
..................................................ATATTGTGCTGTCACAGCAGTA................................................................................................ 22 1 1 9.00 9 2 0 6 1 0 0 0 0 0 0
..................................................ATGTTGGCCTGTCACAGCAGT................................................................................................. 21 2 1 9.00 9 9 0 0 0 0 0 0 0 0 0
..................................................ATACTGTCCTGTCACATCAGT................................................................................................. 21 2 1 9.00 9 4 5 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTAACAGCAG.................................................................................................. 20 1 1 9.00 9 6 2 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCATC................................................................................................. 21 2 1 9.00 9 9 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGC................................................................................................. 21 2 1 9.00 9 8 1 0 0 0 0 0 0 0 0
..................................................AGCTTGTCCTGTCACAGCAGTA................................................................................................ 22 2 1 9.00 9 0 0 9 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAACAG.................................................................................................. 20 1 1 9.00 9 7 0 0 2 0 0 0 0 0 0
..................................................ATATTGTCCTCTCACAGCAG.................................................................................................. 20 1 1 9.00 9 6 2 0 1 0 0 0 0 0 0
..................................................ATATTGTCCTGCCACAGCAGG................................................................................................. 21 2 1 9.00 9 4 5 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTTACAGCAG.................................................................................................. 20 1 1 9.00 9 4 4 1 0 0 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCCGT................................................................................................. 21 2 1 9.00 9 8 0 0 0 1 0 0 0 0 0
..................................................ATATTGTCCAGTCACAGCAGT................................................................................................. 21 1 1 9.00 9 4 3 0 0 1 0 1 0 0 0
..................................................AGACTGTCCTGTCACAGCAGT................................................................................................. 21 2 1 9.00 9 6 2 1 0 0 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCAGC................................................................................................. 21 2 1 8.00 8 4 2 2 0 0 0 0 0 0 0
....................................................ATTGTCCTGTCACAGCAG.................................................................................................. 18 0 1 8.00 8 0 1 0 0 0 5 1 1 0 0
..................................................ATATTGTCCTGTCACAGCAGTTA............................................................................................... 23 2 1 8.00 8 1 7 0 0 0 0 0 0 0 0
...............................................................................................CTCCTGGGTCGGGGCATTAACA................................................... 22 1 1 8.00 8 0 0 7 1 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTTC............................................................................................... 23 2 1 8.00 8 3 4 0 1 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGTC................................................................................................ 22 2 1 8.00 8 5 1 0 0 2 0 0 0 0 0
..................................................ATATTGTCCTGCCAAAGCAGTA................................................................................................ 22 2 1 8.00 8 0 0 8 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCTGTT................................................................................................ 22 2 1 8.00 8 4 1 0 0 3 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCTT................................................................................................. 21 2 1 8.00 8 7 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTCTCACACCAGT................................................................................................. 21 2 1 8.00 8 6 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAACATT................................................................................................. 21 2 1 8.00 8 5 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTTTCACATCAGT................................................................................................. 21 2 1 8.00 8 4 4 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGACGT................................................................................................. 21 2 1 8.00 8 5 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCGTT................................................................................................. 21 3 1 8.00 8 7 1 0 0 0 0 0 0 0 0
..................................................ATATTGCCCTGTCACATCAGT................................................................................................. 21 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
..................................................AGATTGGCCTGTCACAGCAGT................................................................................................. 21 2 1 8.00 8 7 1 0 0 0 0 0 0 0 0
..................................................ATATTTTCCTGTCACAGCAG.................................................................................................. 20 1 1 8.00 8 2 1 0 5 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACACCAGT................................................................................................. 21 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
..................................................ATATTGACCTGTCACAGCAGTA................................................................................................ 22 1 1 8.00 8 4 0 4 0 0 0 0 0 0 0
..................................................ATATTGTCTTGTCACAGCAG.................................................................................................. 20 1 1 8.00 8 3 1 0 0 0 4 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTTG............................................................................................... 23 2 1 8.00 8 3 3 0 1 0 1 0 0 0 0
..................................................ATATTGTCCTGTCACACCATT................................................................................................. 21 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCCGT................................................................................................. 21 2 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACAGCAGTC................................................................................................ 22 2 1 7.00 7 0 2 5 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTCC............................................................................................... 23 2 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................AGGTTGTCCTGTCACAGCAGT................................................................................................. 21 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATTA...................................................... 19 0 1 7.00 7 0 1 6 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACATCAGT................................................................................................. 21 2 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTCTCACAGCAGC................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATATTGTACTGTCACAGCTGT................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACCGCAGT................................................................................................. 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACATCACT................................................................................................. 21 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0
..................................................ATATTGTAATGTCACAGCAGTA................................................................................................ 22 2 1 7.00 7 0 0 7 0 0 0 0 0 0 0
..................................................ATATTGGCATGTCACAGCAGT................................................................................................. 21 2 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................ATATTCTCCTGTCACAGCATT................................................................................................. 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTTACAGCTGT................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCTGT................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCGGTCACAGCGGT................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATATTGCCCTGTCACCGCAGT................................................................................................. 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGTC................................................................................................ 22 2 1 7.00 7 5 0 0 0 2 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGTT................................................................................................ 22 2 1 7.00 7 4 2 0 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCGGG................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATAGTGTCCTGTCACAGCAGC................................................................................................. 21 2 1 7.00 7 5 0 2 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCATG................................................................................................. 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0 0
..................................................ATAGTGGCCTGTCACAGCAGT................................................................................................. 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGAAGTA................................................................................................ 22 1 1 7.00 7 4 0 2 0 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACACCACT................................................................................................. 21 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACCGCAGT................................................................................................. 21 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTTTCACACCAGT................................................................................................. 21 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0
..................................................ATATTGCCCTGTCACAGCTGT................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCTCAGCAGTA................................................................................................ 22 1 1 7.00 7 2 0 2 0 3 0 0 0 0 0
..................................................AGGTTGTCCTGTCACAGCGGT................................................................................................. 21 3 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCGGTCACAGCAGTA................................................................................................ 22 1 1 7.00 7 1 2 4 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACTGCAGTA................................................................................................ 22 2 1 7.00 7 0 0 7 0 0 0 0 0 0 0
...............................................................................................CTGCTGGGTCGGGGCATTAACT................................................... 22 1 1 7.00 7 0 0 7 0 0 0 0 0 0 0
..................................................ATATTGTCCTCTCACAGCAGTA................................................................................................ 22 1 1 6.00 6 2 2 0 1 1 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCCG.................................................................................................. 20 2 1 6.00 6 5 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTTAA.............................................................................................. 24 3 1 6.00 6 4 2 0 0 0 0 0 0 0 0
..................................................ATACTGTCCTGTTACATCAGT................................................................................................. 21 3 1 6.00 6 0 6 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACAACAGT................................................................................................. 21 2 1 6.00 6 2 4 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCAGTCG............................................................................................... 23 2 1 6.00 6 1 4 0 0 0 1 0 0 0 0
..................................................ATATTGACCTGTCACACCAGT................................................................................................. 21 2 1 6.00 6 5 1 0 0 0 0 0 0 0 0
..................................................ATATTGTACTGGCACAGCAGT................................................................................................. 21 2 1 6.00 6 5 1 0 0 0 0 0 0 0 0
..................................................ATAGTGTCCTGTCACAGCGGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATACTGTCCTGTCACAGCAGC................................................................................................. 21 2 1 6.00 6 2 0 3 0 1 0 0 0 0 0
..................................................ATGTTGTCCTGTCACAGCCGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCCGTAA............................................................................................... 23 2 1 6.00 6 3 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACAGCCGT................................................................................................. 21 2 1 6.00 6 3 3 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCAACGCAGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTGACAGCAGT................................................................................................. 21 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0
..................................................ATATTCTCCTGTCACAGCAG.................................................................................................. 20 1 1 6.00 6 4 0 0 2 0 0 0 0 0 0
..................................................AGATTGGCCTGTCACAGCAGTA................................................................................................ 22 2 1 6.00 6 0 0 6 0 0 0 0 0 0 0
..................................................ATATTGTCCTTTCACAGCTGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCAAAGCAGGA................................................................................................ 22 2 1 6.00 6 0 0 4 0 2 0 0 0 0 0
..................................................ATATTGTCCTGTCGCAGCCGT................................................................................................. 21 2 1 6.00 6 4 2 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACTGCTGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACAGCATTT................................................................................................ 22 2 1 6.00 6 5 1 0 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTTACAGCAGT................................................................................................. 21 2 1 6.00 6 2 4 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCCCAGCGGT................................................................................................. 21 2 1 6.00 6 5 0 0 1 0 0 0 0 0 0
..................................................ATATTGTCCTGGCACAGCTGT................................................................................................. 21 2 1 6.00 6 5 1 0 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGTAA............................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATAGTGTCCTGTCACAGCAG.................................................................................................. 20 1 1 6.00 6 3 2 1 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCAGG................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGACCTGTCACAGCACT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATTGGCCTGTCACAGCGGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................AGATTGTCCTGTCACAGCTGTA................................................................................................ 22 2 1 6.00 6 0 0 6 0 0 0 0 0 0 0
..................................................ATATTGTCCTGTCACCGCCGTA................................................................................................ 22 2 1 6.00 6 4 0 0 0 2 0 0 0 0 0
..................................................ATAGTGTCCGGTCACAGCAGT................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................ATATAGTCCTGTCACAGCAGTA................................................................................................ 22 1 1 6.00 6 0 0 3 0 3 0 0 0 0 0

Anti-sense strand reads

TGATTGATCCTCAAGATTTTTCCTATAAGCTTAACCCTGCGAACGGTAACTATAACAGGACAGTGTCGTCATAACATTGTGATATAATATCGAATGACGACCCAGCCCCGTAATTGTAACAACTCGCAGTAATCGTTGCTCTCCGCCGGTCCTTTTTTCCGCTCTTTT

************************************.((((((((.((.((.((.(((((((((.((((((((((((((.......))))))..)))))))))).))))))).)).)).)).))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528802

follicle cells		 V052

head

 V058

head
.............................................................................................ATGACGACCCAGCCCCGTAATTGTAACAAC............................................. 30 0 1 6.00 6 6 0 0
.............................................................................................ATGACGACCCGGCCCCGTAATTGTAACAAC............................................. 30 1 1 1.00 1 1 0 0
..............................................................................................TGACGACCCAGTCCGGTTATT..................................................... 21 3 1 1.00 1 0 1 0
.......TCTTCGAGATTTTTACTATAAG........................................................................................................................................... 22 3 2 0.50 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3R:25064517-25064684 + dya_5 confident ACT-AA------CTAG------G-A--GTTC--TA-------------AAA--AGGATAT-----------T---------------------------------------------------CGAA------------TT-GG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-GA-------------------------------------------------------AAA-----AA----GGCGAGAAAA
droEre2 scaffold_4820:6627779-6627959 + der_7 confident ACC-AC------TGAG------G-A--GATC--TG-------------AAA--AGGATAT-----------A-----------------TAC------------------CATGTAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTCAG-GA-------------------------------------------------------AAA------A----AGCGAGAAAA
droSec2 scaffold_13:202489-202667 - dse_8 confident ACT-AA------CTAG------A-A--GATT--TG-------------AAA--AGGATAT-----------A-----------------TGC-------------------ATATAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAA
droSim2 3r:20926950-20927128 - dsi-mir-1000 Known_mirbase ACT-AA------CTAG------G-A--TATC--TG-------------AAA--AGGATAT-----------A-----------------TAC-------------------ATATAT--ACCGTGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAA
dm3 chr3R:21414551-21414729 - dme-mir-1000 Known_mirbase ACT-AA------TTAG------G-A--GATC--TA-------------AAA--AGGATAT-----------A-----------------TAC-------------------ATATAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAA
droEug1 scf7180000409798:1136818-1136998 + AGA-AG------CTAC------A-A--GATC--GG-------------AAA--AGGATAT-----------A-----------------TAT-------------------ATATAT--GCCACAAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCAAG-GA-------------------------------------------------------AAA-----------CCCGAGGAAA
droBia1 scf7180000302136:2260801-2260984 - AA---A------CCAG------A-G--GATC--CA-------------AGA----GATAG-----------A-----------------TCC--------CAGA-------ATACAT---CCATCGA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA-----------CCCGAGGAAA
droTak1 scf7180000415257:294595-294782 - CCC-AA------ATGG------A-A--GATC--GA-------------AAAAGAGGATAT-----------A-----------------TAC----------------GCCATGTAC-----ACAAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA------C----CCCGAGGAAA
droEle1 scf7180000491280:3122804-3122995 - AAT-G----------G------A-A--------T--TAAATGTATAACGAA--AGGATAT-----------ATTTATATA-------TATATATATA-------------TATGTATACACTACGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG-------------------GA-------------------------------------------------------AAA-----------CCCGAGGAAA
droRho1 scf7180000779501:511358-511524 + GCG-AA----------------G-A--GATC--GA-------------AAA--AGGATAT-----------A-----------------T-----------------------------GTCACGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-GA-------------------------------------------------------AAA-----------GCCGACGAAA
droFic1 scf7180000454055:1331147-1331310 - AACCAA------ATC---------------------------------------GGATAT-----------A--------------------------------------------T--TCCATGGA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAA-AACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA-----------GCCGAGGAAA
droKik1 scf7180000302639:1623465-1623638 + AAG-CGCCAGGC------------A--AATC--C--------------ATA--AGGATAT-----------A-----------------TCG-----------------------------C-GCAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCGG------AAAACTCCGA----------------------------------------------AAC-----------TCAAAGGAAA
droAna3 scaffold_13340:3670401-3670567 - dan_4 confident AAT-AA------GAAA------A-ACAGGAC--TA-------------TAA--AGGATAT-----------A-----------------TGG-----T----------GTCATAT----------------------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------G-------AG-GA-------------------------------------------------------AAA-----------GTCAAGGAAA
droBip1 scf7180000396712:682181-682339 + AAA-AA------CTGG-------------AC--TA-------------TAA--AGGATAT-----------A-----------------C-------------------------------CGTCAT------------AT--A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------G-------AG-GA-------------------------------------------------------AAA-----------GTCAAGGAAA
dp5 2:21158111-21158337 - dps-mir-1000 Known_mirbase AAT-CTATGTGG------------A--AATG------------------------CATAT-----------------------AGAAGATACATATATATCGAATTAC-----ATAC--GGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAA--------GAG---A-AG-GA-GAAGCTACAAAGC------TACAAA----GCTACGGA-----------------AAA------A----TGCTACAGAA
droPer2 scaffold_3:3932617-3932826 - dpe_6 confident AAT-CTATGTGG------------A--AATG------------------------CATAT-----------------------AGAAGATACATATATATCGAATTAC-----ATAC--GGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAA--------GAGCTACAA-----------------------------A----GCTACGGA-----------------AAA------A----TGCTACAGAA
droWil2 scf2_1100000004943:14638693-14638874 + dwi_7 confident GCT-AT------CC-------------------------------------------------------------------------------------------------ATCTA------ACAA---------------AAG-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC---------TCTA-----------------------CTTCTGATGATGATAATAATGATTCAAGTCAAAAGGGAACGAAAAAAA
droVir3 scaffold_12855:6810201-6810419 - dvi-mir-1000 Known_mirbase TAT-AT------TTGA-------------TA----------------------------T-----------A--------TACAGGCGGCATATATGTGTCTGATTGT----GATAT--ATCGTCG-------------AT-CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-------AA---GCCAG-AA--AAGCCACAAATCAGAGATGACAAATTCGGTTTCGGG-------------------------AA----GGGGACATAA
droMoj3 scaffold_6540:25791472-25791659 + dmo_3 confident GCT-GC------CTCGACCAAAGGG--GGCC---A------------AGGA--AGGCCCATCTGATTGGA---TTGGATA---------TCC-------------------ATCTAT------C--AATCAACGCGTCTATTAT-AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAG----------------------------------------------------------------------------------------------AAGAAA
droGri2 scaffold_14906:2964679-2964883 - dgr_8 confident GCA-AA------GTGA------A-A--GGTCATCAAGAAATGTATACAGAT--TT-----------TGGATACTTGGATA-------TATAT-------------------ATATAT-----ATTTA------------AT-CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGCGA-------------------------------------------------------GAA-----------GCAGAG----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
ACT-AA------CTAG------G-A--GTTC--TA-------------AAA--AGGATAT-----------T---------------------------------------------------CGAA------------TT-GG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-GA-------------------------------------------------------AAA-----AA----GGCGAGAAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21148530.0048530144111801208912174802513911594250
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22120973.0020973977624129133804111514703492250
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2017246.0072462818474571017892068241050
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211269.001269173181846971970000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231693.00693554142126433230000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211683.00683170029203618410000
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................191677.0067760220221737330000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211351.003511670646610710000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................221169.00169636612305200000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................221164.0016422784352602060
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231145.001452246214232810000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................211129.0012960108131100000
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201107.0010707740121400000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211107.001074411207700000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................20185.0085760201600000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................21179.00791432352500000
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18175.0075603503400000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................23148.00480100242030000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20145.00452000103300000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22143.00437241181100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24138.00383400111910000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23134.00343512131000000
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19133.0033230001000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................23126.0026270141200000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19126.0026112106510000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC.......................................................................................................21125.0025200300200000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20125.0025041911000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20121.0021012061200000
.....................................................................................................................................................................................TTGTAACACTATAT--TATAGCTTA..................................................................................................................................................23118.0018004120200000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................22116.0016000151000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................19115.0015100021200000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGC..........................................................................................................18113.0013100101100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................22111.001100004700000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA..............................................................................................................................20110.001000810000010
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATT................................................................................................................................18110.001050201200000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGA..........................................................................................................................................................................23110.001032011300000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATC............................................................................................................................................................................2119.00900000900000
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................1818.00805001010010
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................2318.00800007100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTC..........................................................................................................................................................................2318.00810004300000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................2318.00811003300000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCC..........................................................................................................................................................................2317.00700001600000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTA...............................................................................................................................1917.00700601000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATG............................................................................................................................................................................2117.00700003400000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACT............................................................................................................................2217.00700700000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA.........................................................................................................................................................................2416.00600002400000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCG..........................................................................................................................................................................2316.00601004100000
droEre2
ACC-AC------TGAG------G-A--GATC--TG-------------AAA--AGGATAT-----------A-----------------TAC------------------CATGTAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTCAG-GA-------------------------------------------------------AAA------A----AGCGAGAAAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21170255.0070255182722676048113111250477320
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22117908.001790813696249559272337666320
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2017295.007295536445991339957040
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1915197.00519728421933049130
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2311938.001938951486279116250
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211772.0017724451281512014600
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211551.0055114152269980
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201263.002631247121111080
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211220.002209418491940
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231216.00216751312331100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211180.001801016281530
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................221124.00124142223163460
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................241107.0010740414940
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................221106.0010633115913350
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19190.00901036114560
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................21182.00822491333300
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22167.0067824100430
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18164.006421100600
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................23150.005060101420
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23146.004662530300
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19144.004439000050
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20144.0044514000250
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20143.004300700360
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGA..........................................................................................................................................................................23137.003730002320
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................21133.003311615190
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................23130.003020301240
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................23119.001900201160
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20119.001900200170
.....................................................................................................................................................................................TTGTAACACTATAT--TATAGCTTA..................................................................................................................................................23118.001800070110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCG..........................................................................................................................................................................23115.001500103110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................23115.00153020370
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA.........................................................................................................................................................................24113.001300001120
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................21112.001210100100
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA......................................................................................................22111.00110020270
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18111.00116000140
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................22110.00109000010
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1819.0094000050
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................1919.0090000090
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................2019.0090110070
...............................................................................................................................................................ATATTGTCCTGTCACAGT...............................................................................................................................................................................1818.0080000080
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGC..........................................................................................................................................................................2317.0071010050
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG......................................................................................................2217.0070000070
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTC..........................................................................................................................................................................2316.0060020040
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGG..........................................................................................................................................................................2316.0060000060
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1816.0062020020
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2216.0063000120
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................1915.0050201020
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTGA.........................................................................................................................................................................2415.0050000050
............................................................................................................................................................................................................TACTGCTGGGTCGGGGCATTAAC.............................................................................................................................2315.0050001040
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2114.0040000040
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2114.0041000030
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................2214.0040000040
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCT.........................................................................................................1914.0040010030
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTGC.........................................................................................................................................................................2414.0040010030
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAAA........................................................................................................................................................................2514.0041000030
droSec2
ACT-AA------CTAG------A-A--GATT--TG-------------AAA--AGGATAT-----------A-----------------TGC-------------------ATATAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21145317.00453178114696604533765
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22110064.001006442013659063602
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2015979.005979351204755349
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1913172.003172230193130
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211908.0019083377191779
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231480.00480311597337
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211401.004014121384
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201389.00389732934253
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211209.0020940850111
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................221179.001790615914
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................21183.008305870
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................23164.0064240832
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19157.0057512427
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19147.0047200027
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20146.004621358
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22136.003607524
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18136.003640131
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................21128.002800028
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................21128.0028120214
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24127.002703024
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20122.002210021
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22116.001600124
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................21115.001500132
...............................................................................................................................................................ATATTGTCCTGTCACAGT...............................................................................................................................................................................18110.001000010
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................2019.0092106
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2218.0082006
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................2318.0082015
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTA...............................................................................................................................1918.0081061
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1817.0072014
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................2317.0071015
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2116.0063012
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2216.0064020
.....................................................................................................................................................................................TTGTAACACTATAT--TATAGTTTA..................................................................................................................................................2315.0050041
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................1924.5090009
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTT...............................................................................................................................1914.0040004
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................1914.0041012
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................2314.0043001
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................1814.0042002
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGG..........................................................................................................................................................................2314.0041003
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1814.0041003
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATT................................................................................................................................1814.0040022
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................1914.0040004
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCG..........................................................................................................................................................................2313.0030102
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGAT...........................................................................................................................................................................2213.0030003
..................................................................................................................................................................TTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2013.0031002
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAGA.........................................................................................................................................................................2413.0031011
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................2313.0030003
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................2013.0031002
...............................................................................................................................................................ATATTGTCCTGTCACAGCATC............................................................................................................................................................................2112.0020002
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACAA...........................................................................................................................2312.0020011
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2012.0020002
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................2212.0020002
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACT............................................................................................................................2212.0020011
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA.........................................................................................................................................................................2412.0020002
...............................................................................................................................................................ATATTGTCCTGTCACAGCGTA............................................................................................................................................................................2112.0020020
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................2312.0020002
................................................................................................................................................................TATTGTCCTGTCACAGCAGA............................................................................................................................................................................2012.0021001
...................................................................................................................................................................TGTCCTGTCACAGCAGTA...........................................................................................................................................................................1812.0020011
...............................................................................................................................................................ATATTGTCCTGTCACAGCTA.............................................................................................................................................................................2022.0040022
droSim2
ACT-AA------CTAG------G-A--TATC--TG-------------AAA--AGGATAT-----------A-----------------TAC-------------------ATATAT--ACCGTGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................20120599.0020599177873353033750203001161902001000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22113350.0013350288059151870533017435886304451903002
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................2119946.009946439010622486302345977475754142110100
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1913715.00371549562483311500361000000
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................1812697.00269747196046216300010100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211489.00489458101910000100000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211447.00447388163520001000500000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................201359.003593522500000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231308.0030813200528500100200000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................221187.0018717074108003008201100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231168.00168190050000464215401000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................211101.0010113161007000101800000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................22191.00916922200000101500000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20142.0042001103700000300000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................21130.0030302601000410400000
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18129.0029700002200000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19128.0028171041500000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22128.0028190300000000600000
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................20123.002330160500340100000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATT................................................................................................................................18122.0022122400400000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22120.002091000000100900000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................21117.0017131000000010200000
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................18115.0015000011400000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24114.001420100000640100000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19113.0013000001100100100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................19113.0013130000000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGC..........................................................................................................18111.001180300000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC.......................................................................................................21111.001180300000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTATT.........................................................................................................................................................................24110.0010000001000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................1929.5019190000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................2019.00980100000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2217.00700000600000100000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA..............................................................................................................................2016.00601500000000000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTA...............................................................................................................................1916.00610100400000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................1915.00550000000000000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................1915.00500000100010300000
.....................................................................................................................................................................................TTGTTACACTATAT--TATAGTTTA..................................................................................................................................................2314.00400100000000300000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATA................................................................................................................................1814.00440000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCTT.............................................................................................................................................................................2024.00880000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................2314.00420010000000100000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2113.00300000300000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................2313.00300000000000300000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG......................................................................................................2213.00330000000000000000
.................................................................................................................................................................................................................CTGGGTCGGGGCATTAACA............................................................................................................................1913.00320100000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCA.........................................................................................................1913.00330000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACA.................................................................................................................................................................................1613.00300000000120000000
...............................................................................................................................................................ATATTGTCCTGTCACAGG...............................................................................................................................................................................1813.00330000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................2212.00200000000000200000
.................................................................................................................................................................................................................CTGGGTCGGGGCATTAAC.............................................................................................................................1812.00201100000000000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2012.00200000200000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2112.00200000000200000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2012.00220000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAAG............................................................................................................................................................................2112.00220000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGG..........................................................................................................................................................................2312.00220000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGT...............................................................................................................................................................................1812.00220000000000000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACG............................................................................................................................2212.00200200000000000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1811.00100000100000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTATTG........................................................................................................................................................................2311.00100000100000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA......................................................................................................2211.00100100000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCATTAGCG.........................................................................................................1911.00110000000000000000
............................................................................................................................................................................................................TACTGCTGGGTCGGGGCATT................................................................................................................................2011.00110000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAC.............................................................................................................................................................................1911.00110000000000000000
......................................................................................................................................................................................................................................................AACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGA.....2611.00100000000000100000
dm3
ACT-AA------TTAG------G-A--GATC--TA-------------AAA--AGGATAT-----------A-----------------TAC-------------------ATATAT--ACCATGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-GA-------------------------------------------------------AAA-----------CCTGAGAAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................211490974.0049097400009330001543650635062100024003183310326653896236283100321112221080684500000432023000000000000000000001143908210031719164518482801126331096469611926701191173127228610342841178039971123465795957429168231854547519150000000000178493074382372503000004050781062413496076431053936567332297591111514203128131866805604311524730132617000240158000000240003002152633833627372817171428102014200027872387310687932311561434173815111950281052638906534212851826249692977130200697322206133741243683052180350455509858518274125165664432011452932135922911604132960134113211824082151674101639413411875077431756811833139812592751724110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................221128301.001283010000301021728750601211016900100000576280144132854247645500100011017114322100003716220000000000000000000004531221528950456442771922639925810511817941367234122011801553675249685240317021491092313534626143775091254982739147300000000001910624211311041000000000000006791837605031142063827194929159535693109226736414315115701020114128610400040700000000000000000021187032495039242861465628984500142512350226679231068531007163170011438822032460161416101339172121310112861129589720842822525218101074701267127937961617528906100131002818687638833823225830
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................20179086.0079086000016100010500120017400001010218381588138211112000000000000001000000543000000000000000000000503023004133638013165111900247071003145194737017914214120117883133862075380283314410000000000102000000000000000000000004244564702012127110219825719222766157212602208003004695303000020100000000000000000000143821121200214001810013412133101235712600302400013091000445010500010000000000020332203936457780761631827137120234101671620023526512001010004143027514303525113210
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................19114360.00143600000000000000002010000000010212161871591100000000000000000000001230000000000000000000001000000200040120120000160000700010000121701473190084331144138520000000000000000000000000000000000002837740211535018218201164312349357000002151010000000000000000000000000010000000010000100073023721230047319703530000018020000100021000000002000000102651509995173602157030000380182900000300000000002308883425021000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................23112209.001220900001000001040000010000030000000000000000000000000000000000000000000000000000000081066001842830524483171071728110026713182222441502881439035191094546525600000000000030000000100000000000000010281620082731254941226679998522103000000864308000000700000001000000000110033232246000284002521011301001743106600000440000010000100100900110000001121277136242631411900010034028370000017000000000014650100000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2219984.00998400001000000000100400000000000000000000000000000000000000000000000000000000000000800200011200800600000023000115120100004155422240353914354503949000000000010100000004000000000200000347628026020140259111955754151238120000057900300000000000000000000000001011220000110002100810291578000961920831000066200027010010000020000001000354954759611081153480101008807281000017720000000001394120102712000110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................2116173.00617300000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000001000010300004010000000831706360263143200000000000000000000000000000000000012910808700848016050579981180000013500000000000000000000000000000000000000000000000670349100015170110000017100021000000000000000000000366714079922131814517061001125112894000002000000000012200001000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTATC.........................................................................................................................................................................2413787.003787000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000024121373000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................2112745.002745000000000001000001000000000000000000000000000000000000000000000000000000000000002000000000031040000003000130000000001361604090172810000000000000200000100000000000000000138162091002122016190243015000002020000000000000000000000000000000000000000000010011102272000162206000001000000200000000013000000000011842642152092544619031200177087820000060000000000210063223000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................2212492.0024920000100368030000001000000000110000000000000000000000000000000000000000000000000001098270770115229522050300142917400014217221285556350138160501103086000000000001426000000000000000000000089920322024295151232054150000083000000000000000000000000000000010000014200000006158001000041203000001100004000000000000000000000007577406521022393010000001611000002001000000028344702000100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................2112423.0024230000300000020000000000000000000000000000000000000000000000000000000000000000000040000001000800400000022000100000000014110110729150540000000000000000000000000000000000006111204032133822111381332113100008800100000000000000000000000000000000000000207300210737200015730500000100000000000000000100000000001160248254165296201000061043530000060000000000227031331000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2312176.00217600002000000000000000000000004212617401000000000000000000000017811000000000000000000000000000070004031003000353000016170300010404010237011010110000000000000000000000000000000000001622520931048203313741363205200000221000000000000000000000000000000000100000000037140043037000011140400000000000000000000000000000000007810170321000000003400000000000000000611000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGATC..........................................................................................................................................................................2311658.00165800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159499000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................2211146.00114600000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000021000001100002010000101217252080451615916575000000000000000000000000000000000000936204773612191301133000000330000000000000000000000000000000000000000000300041022110001512050000030000010000000000100030000000282331661125201000010084000002000000000024250021000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201851.0085100002000000100100300000000001249470000000000000000000000000000000000000000000000003000000400040580000101010001231120100039130901531301831927000000000000000000000000000000000000458203000860463282224000002500000000000000000000000000000000010000000000000020020000240100000300000000000001000000000100002514102601010000006019000000000000000025641110000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211754.00754000010000001002000000000000137244236000000000000000000000000000000000000000000000000000100014203302310100110000020360600000154010216661102101300000000000000000000000000000000000021640302015164624468152211600000270000000000000000000000000000000000000000000200014001000011010000000000020000000000000000000000241201000000001000000001000000000001510000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................191731.00731000000000000000000000000000006679211000000000000000000000000000000000000000000000000000000002000400000170000100000000000010000010110000000000000000000020000000000000009380361031076760242281000002600000000000000000000000000000000000000000000000750010000020000000100000000000000100000000000002018304506630000007041000000000000000002431001000000
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................181667.00667000000000000000101000000000165118859000000000000000000000000000000000000000000000010000000001001100000000000401000004065030021031501001100000000000000000000000000000000371056268128692963828000002400000000000000000000000000000000000000000000000200210000014000000000000010001000000000000000000212746731201000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................241599.0059900002000000300000000000000000000000000000000000000000000000000000000000000000000000000000000026010000130001800010000010101080170104200000000000000000000000000000000000064830360017360310500991100000380000000100000000000000000000000100000010000100010002000050020000020000000000000000100000000000310990011000000100200000000000000000000000000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................211455.004550000200011021000000000000002500000000000000000000000000001000000000000000000000012231400100020610000151900018650271022000002021201023000000000011190000000000000000000000059043244035321500000170000000000000000000000000000000100000010000000018140010000000000000400001000000000000000000000002514953740200000000040000000000000000102031020000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................201454.004540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000001124710000000000000000000000000000000000000405901600320401318000000100000000000000000000000000000000000000000000000000033000041910000001000000000000000000000000000020211010500100000002021000000000000000002201100000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................221432.00432000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010100000000100100001001013600034170403300000000000000000000000000000000000036570313371527355254840000035000000000000000000000000000000000000000000000003000100004703000001000000001000000000000000000027680000000000000100000000000000000600000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................201368.003680000000000001000000000000009300000000000000000000000000000100000000000000000000010003000000000000000000000500010000000000012010020000000000000000000000000000000000001527027119563265142632900000010000000000000000000000000000000000000000000000004100100001201000001000000000000000000000000000013140200000000000000000000000000000100000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................201335.0033500000000010000000000000000000000000000000000000000000000000000000000000000000000200000000004000000000100002000000000141000200040560000000000000000000000000000000000001963016011717022026000000210000000000000000000000000000000010000000000040000013000041802000000000000000000000000000000000011683500000000001000000000000000000011400000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................231319.003190000100000000000010000000000000000000000000000000000000000000000000000000000000010000000001000100000010000000000000011000115010040000000000000000000000000000000000002947015011333144020123100000350000000000000000000000000000000000000000000000001011000013020000010000000000000000000000000000410120100000000000300000000000000000301100000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................231298.002980000100000000000000000000000000000000000000000000000000000000000000000000000000010001000000000001001000000530010000035201001218175000000000000000000000000000000000000195601410212114051120000001000000000000000000000000000000000000110000003114000000300003201000000000000000000000010000000000021080020000000100000000000000000000300000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................191224.00224000000000000001001000000000000151501000000000000000000000000000000000000000000000000001000000102400000000000301000004023200013207161000000000000000000000000000000000000014360110002212004000000002000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000011230000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTGTAACACTATAT--TATAGTTTA..................................................................................................................................................231186.00186000000000000000000000000000115011310000000000000000000000000000000000000000000000000002000000000200000090000000000100021010045010110000000000000000000000000000000000002518080101701161188000000000000000000000000000000000000000000000000000004000000001000000000000000000000000000000000000000015700010000000000000100000000000100000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................231180.001800000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000100000000000000043200001301801125000000000000000000000000000000000000111801100220000000000002000000000000000000000000000000000000000000000000000400001201000000000000000000000000000000000036160000000000000000000000000000000300000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................231170.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030000000001000000000000003000010005014000000000000000000000000000000000000153801400470401502110000013000000000000000000000000000000000000000000000000000010001000000001000000000000000000000000000011850000000000000000000000000000000100000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................201152.00152000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000008000010001211011000000000000000000000000000000000000212107000400030200000070000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000343190000000000101000000000000000000900000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................191143.001430000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000318120400000504800000000000000000000000000000000000086031000000302000000000000000000000000000000000000000000000000000000000027000001601000000000000000000000000000000000013191000000000001100000000000000000300000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................221128.001280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006503000400028037000000500000000000000000000000000000000000000000000000000000000110100000000000000000000000000000000001013840000000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATG............................................................................................................................................................................211124.001240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020520000000000000000000000000000000000001490200100000010000000000000000000000000000000000000000000000000000000000110001001000001000000000000000000000000000081682101073000000501300000000000000000000000000000
droEug1
AGA-AG------CTAC------A-A--GATC--GG-------------AAA--AGGATAT-----------A-----------------TAT-------------------ATATAT--GCCACAAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCAAG-GA-------------------------------------------------------AAA-----------CCCGAGGAAASizeHit CountTotal NormTotal
No Reads
droBia1
AA---A------CCAG------A-G--GATC--CA-------------AGA----GATAG-----------A-----------------TCC--------CAGA-------ATACAT---CCATCGA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA-----------CCCGAGGAAASizeHit CountTotal NormTotal
No Reads
droTak1
CCC-AA------ATGG------A-A--GATC--GA-------------AAAAGAGGATAT-----------A-----------------TAC----------------GCCATGTAC-----ACAAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA------C----CCCGAGGAAASizeHit CountTotal NormTotal
No Reads
droEle1
AAT-G----------G------A-A--------T--TAAATGTATAACGAA--AGGATAT-----------ATTTATATA-------TATATATATA-------------TATGTATACACTACGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG-------------------GA-------------------------------------------------------AAA-----------CCCGAGGAAASizeHit CountTotal NormTotal
No Reads
droRho1
GCG-AA----------------G-A--GATC--GA-------------AAA--AGGATAT-----------A-----------------T-----------------------------GTCACGAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-GA-------------------------------------------------------AAA-----------GCCGACGAAASizeHit CountTotal NormTotal
No Reads
droFic1
AACCAA------ATC---------------------------------------GGATAT-----------A--------------------------------------------T--TCCATGGA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAA-AACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCAAG-GA-------------------------------------------------------AAA-----------GCCGAGGAAASizeHit CountTotal NormTotal
No Reads
droKik1
AAG-CGCCAGGC------------A--AATC--C--------------ATA--AGGATAT-----------A-----------------TCG-----------------------------C-GCAA------------AT-CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCGG------AAAACTCCGA----------------------------------------------AAC-----------TCAAAGGAAASizeHit CountTotal NormTotal
No Reads
droAna3
AAT-AA------GAAA------A-ACAGGAC--TA-------------TAA--AGGATAT-----------A-----------------TGG-----T----------GTCATAT----------------------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------G-------AG-GA-------------------------------------------------------AAA-----------GTCAAGGAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21155950.0055950246296523115698240834186
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22111821.0011821124519633851264666898
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2018774.00877412233681987525468
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2215797.00579714321973584620
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1912164.0021641103147541571
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2311244.0012448111132307902
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211791.0079120018838644
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211477.004773218113910106
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231278.0027811070270134
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGA..........................................................................................................................................................................231234.00234120062214
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201219.002191722014229
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................231171.001713600215109
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................201146.00146800153120
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................231142.00142250044271
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211111.0011183612019
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211104.0010423167922
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19190.00908000505
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24189.008986313059
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGG..........................................................................................................................................................................23184.00847008069
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22183.0083140116151
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................23177.007790020345
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................22148.004862452110
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18145.004563118017
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22145.004527023112
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGAT...........................................................................................................................................................................22144.00440006137
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19144.004411104127
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTGA.........................................................................................................................................................................24137.00373003031
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20134.003430016114
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................21133.00331224105
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTAG.........................................................................................................................................................................24129.00294003121
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20128.00287130008
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................22123.00230007016
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCG..........................................................................................................................................................................23121.00211005114
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA.........................................................................................................................................................................24121.00211002018
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................19220.504130122015
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................23116.0016200806
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................22115.00151201002
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18114.0014700007
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................20114.0014020606
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23113.0013430402
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTGG.........................................................................................................................................................................24111.0011300008
...............................................................................................................................................................ATATTGTCCTGTCACAGCATG............................................................................................................................................................................21110.00100001000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAGA.........................................................................................................................................................................2419.009200106
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2219.009800001
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAGT........................................................................................................................................................................2518.008100214
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGAG...........................................................................................................................................................................2218.008100403
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................2217.007000502
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGAA.........................................................................................................................................................................2417.007200005
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2017.007100204
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAG.........................................................................................................................................................................2417.007201112
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGC..........................................................................................................................................................................2316.006000105
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTC..........................................................................................................................................................................2316.006000402
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1816.006310101
.....................................................................................................................................................................................TTGTAATTCTATACTATATAGCTTA..................................................................................................................................................2516.006012003
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2116.006000303
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................1916.006000600
droBip1
AAA-AA------CTGG-------------AC--TA-------------TAA--AGGATAT-----------A-----------------C-------------------------------CGTCAT------------AT--A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------G-------AG-GA-------------------------------------------------------AAA-----------GTCAAGGAAASizeHit CountTotal NormTotal
No Reads
dp5
AAT-CTATGTGG------------A--AATG------------------------CATAT-----------------------AGAAGATACATATATATCGAATTAC-----ATAC--GGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAA--------GAG---A-AG-GA-GAAGCTACAAAGC------TACAAA----GCTACGGA-----------------AAA------A----TGCTACAGAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21124735.00247357198221736583205510327150600102
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22124714.00247148160295153928820110938610280
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2012833.0028338104861583201029380046
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................2111600.0016000346510875373000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................221850.008500123103256028739006
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................191533.0053317017893682004
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................221343.003430165169525400146
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231276.002760501139511162007
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231263.00263086371198110002
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201196.001960139437582001
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211173.00173011823181120001
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................211139.001390154325920045
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................221116.0011602344620131000
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................191102.00102010001000001
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18190.009017273000007
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................21169.006901102114221000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19158.0058023431000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20154.0054092516301000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................21145.0045043102241001
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22135.003500522620000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23119.00190277300000
.....................................................................................................................................................................................TTGTAAC--TTAAT--TATAGCCTA..................................................................................................................................................21119.00190071911000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................22115.00150820040001
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................19113.00130533200000
.............................................................................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC.............................................................................................................................22113.00130050230003
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................21111.00110801011000
...............................................................................................................................................................ATATTGTCCTGTCACAGCTT.............................................................................................................................................................................20210.00200509051000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGC............................................................................................................................................................................1918.0080008000000
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1818.0080701000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................1918.0080004040000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................2218.0080000710000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................2318.0080501010001
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................1927.50150505050000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................2017.0070101040001
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................2017.0070004030000
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................1817.0070313000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTA...............................................................................................................................1917.0070000340000
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1817.0070401101000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................2416.0060200031000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTATT.........................................................................................................................................................................2216.0060023010000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................2015.0050005000000
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTT...............................................................................................................................1915.0050100031000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................2215.0050001400000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTATT.........................................................................................................................................................................2415.0050112100000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2115.0050004010000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATC............................................................................................................................................................................2115.0050012020000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................2314.0040101010001
...............................................................................................................................................................ATATTGTCCTGTCACAGCAAC............................................................................................................................................................................2114.0040004000000
..............................................................................................................................................................GATATTGTCCTGTCACAGCAGT............................................................................................................................................................................2214.0040400000000
...............................................................................................................................................................ATATTGTCCTGTCACA.................................................................................................................................................................................1614.0040000000004
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA..............................................................................................................................2013.0030010100001
droPer2
AAT-CTATGTGG------------A--AATG------------------------CATAT-----------------------AGAAGATACATATATATCGAATTAC-----ATAC--GGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAA--------GAGCTACAA-----------------------------A----GCTACGGA-----------------AAA------A----TGCTACAGAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21154875.0054875745134201250240531835
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................2214888.00488826529811691050206937
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2014244.00424478188121162279212
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211699.0016990266304134320
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................191914.0091401643475452
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231452.00452019141472684
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211418.00418500643472
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211227.002271201281860
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211157.00157010391161
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231120.00120026225670
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22193.009301415730
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................20161.006103406210
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA............................................................................................................................22155.0055120152611
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20132.00320005270
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................21128.00280211240
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................20121.00211008120
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19119.00190170020
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18119.00191402120
...............................................................................................................................................................ATATTGTCCTGTCACAGCATG............................................................................................................................................................................21117.00170002150
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................23116.00160302110
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19113.0013000580
...............................................................................................................................................................ATATTGTCCTGTCACAGCATC............................................................................................................................................................................21113.00130003100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22113.0013011380
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20112.0012010290
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................19212.00240002220
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATT................................................................................................................................18110.0010410050
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................22110.0010000280
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC.............................................................................................................................2119.009503100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................2419.009000270
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................2319.009000270
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................2218.008000170
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2118.008030230
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................2017.007041020
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................2317.007010240
..............................................................................................................................................................................................................CTGCTGGGTCGGGGCATTT...............................................................................................................................1917.007000160
.............................................................................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC.............................................................................................................................2216.006101220
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2216.006050010
...............................................................................................................................................................ATATTGTCCTGTCACAGCTT.............................................................................................................................................................................2036.00180005130
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1816.006010230
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCC...........................................................................................................................................................................2216.006000060
droWil2
GCT-AT------CC-------------------------------------------------------------------------------------------------ATCTA------ACAA---------------AAG-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC---------TCTA-----------------------CTTCTGATGATGATAATAATGATTCAAGTCAAAAGGGAACGAAAAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21193112.00931124343114816611791868042
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22154414.00544143931886433599213562
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................20118088.00180889449567413607671
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1914262.004262247514383922
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2311526.00152622293700772
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211162.00116235157361069
.....................................................................................................................................................................................TAGTAACA-TAT-T--CATTTCGTA..................................................................................................................................................211626.006261411041272
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211486.004863101335137
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA............................................................................................................................221414.00414778129830
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211399.0039936002631
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231318.003183559163160
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211272.002723025262
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................181225.0022520300616
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201178.001785763589
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211175.0017536614362
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................201152.001521440008
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19194.00940731074
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19168.006810460012
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20165.00650303428
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------............................................................................................24158.0058520015
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC.............................................................................................................................21152.00521040335
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22137.00372101816
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22135.00351000178
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20130.0030410025
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------C...........................................................................................25129.0029221042
...................................................................................................................A------ACAA---------------AAG-AGAGCTTGCCAGTG.................................................................................................................................................................................................22125.00250011212
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................23125.0025430414
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------A...........................................................................................25122.0022220000
.............................................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC.............................................................................................................................22121.0021141042
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGA.....................................................................................................23120.0020200000
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................19116.001670009
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18115.001524009
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................22115.001514055
..........................................................................................................................ACAA---------------AAG-AGAGCTTGCCAGTG.................................................................................................................................................................................................21114.0014000212
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20113.0013100111
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATT................................................................................................................................18113.0013130000
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CGG.........................................................................................27113.001350080
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................19112.001280004
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................19110.001011026
.............................................................................................................................A---------------AAG-AGAGCTTGCCAGTG.................................................................................................................................................................................................1819.00900036
..........................................................................................................................................................................................................CGTACTGCTGAGCCGGGGCATT................................................................................................................................2219.00980010
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................1919.00930006
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................2318.00830005
........................................................................................................................................................................................TAACA-TAT-T--CATTTCGTA..................................................................................................................................................1818.00850030
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2117.00700061
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAA..............................................................................................................................2017.00700070
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAAC.......................................................................................................2117.00770000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2117.00700007
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTATA.........................................................................................................................................................................2216.00600033
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2116.00601014
...............................................................................................................................................................ATATTGTCCTGTCACAGT...............................................................................................................................................................................1816.00600024
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1816.00605001
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------AA..........................................................................................2615.00550000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2215.00503002
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CGGA........................................................................................2815.00550000
......................................................................................................................................................................................AGTAACA-TAT-T--CATTTCGTA..................................................................................................................................................2015.00501040
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTA...............................................................................................................................1915.00530011
...........................................................................................................................CAA---------------AAG-AGAGCTTGCCAGTG.................................................................................................................................................................................................2015.00500005
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTGA..........................................................................................................................................................................2315.00511003
......................................................................................................................................................................................................ATTTCGTACTGCTGAGCCGGGGCATT................................................................................................................................2615.00550000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2114.00401021
..........................................................................................................................................................................................................CGTACTGCTGAGCCGGGGCATTAAC.............................................................................................................................2514.00440000
........................................................................................................................................................................................TAACA-TAT-T--CATTTCGTACTGCTGAGCC........................................................................................................................................2814.00440000
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1814.00411002
...............................................................................................................................................................................................................TGCTGAGCCGGGGCATTAACA............................................................................................................................2114.00412010
............................................................................................................................................................................................................TACTGCTGAGCCGGGGCATT................................................................................................................................2014.00440000
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------AAA.........................................................................................2713.00330000
...........................................................................................................................................................................................................GTACTGCTGAGCCGGGGCATTA...............................................................................................................................2213.00320010
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CAA.........................................................................................2713.00330000
.....................................................................................................................................................................................TAGTAACA-TAT-T--CATTTCGT...................................................................................................................................................2013.00330000
....................................................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------G...........................................................................................2513.00330000
droVir3
TAT-AT------TTGA-------------TA----------------------------T-----------A--------TACAGGCGGCATATATGTGTCTGATTGT----GATAT--ATCGTCG-------------AT-CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-------AA---GCCAG-AA--AAGCCACAAATCAGAGATGACAAATTCGGTTTCGGG-------------------------AA----GGGGACATAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21141284.00412848876711161205030011200045712689115427843496132972646327950234232111811210192131100001017413710124620142885134301394002031274176001202
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................22115885.00158858544254629120200000000189396458413498994371860148603203137514000008001400060685680161811691351465749652112858012003130323510000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2018105.008105305269595039000000000021919461108185671113350010001313011000000000000023052320171372547630001004138233000100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2311810.00181002371001000000004271819628412888012525400110310300201200000000000000000001012144303000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2211688.0016884979600000000001621157714117067011820711000300000000000000000000000000000284843300000001000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1911001.00100141114510000000000503718204121043360000010000000000000000000000000000012563300000004000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231749.0074902461900000000001467735934842076132000002020000000000000000000000000003422000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................211498.00498783220400000000003522410220000000000000000000000000000000000005168800000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211170.0017013103260000000000040031002000000000000000000000000000000100000332000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................181141.00141974420000000000433241038000000000000000000000000000000000122017000000002000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211141.00141011200000000000781631030000000000000000000000000000000000000092700000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201111.00111008120000000000341310003000000000000000000000000000000000000012100000000000000000
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA............................................................................................................................22198.0098054150000000000621571043000000000000010000000000141322000009812000000000000001100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................22188.00880101300000000001223863022000000000000000000000000000001000002725100000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................20187.0087563000000000000000000001000000000000000000000000000000000000018000000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19179.007907710000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTGTA-CGTTAAGC--AATTG-GTA..................................................................................................................................................21171.00710002600000000001111010020000000000000000000000000412110010011160000000100000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACC......................................................................................................22167.006705900000000000000010000100000000000000000000000000010000001200000010000000010000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................21160.006000404000000000050210001300000000000000000000000000000000000103000000000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAAC.......................................................................................................21153.005314000000000000040001102200000000000000000000000000000000000001000000000000010000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................19147.004700160000000000043052103300000000000000000000000000000000000008200000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24146.0046001000000000001630111103400000000000001000000000000000000000004001000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................23139.00390020000000000055270303900000000000000000000000000000000000003000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................22135.00352652000000000030112000300000000000000000000000000000000000037000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20131.003101100000000000112203051000000000000000000000000000000000000014000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................23129.00290020000000000052364000400000000000000000000000000000000000003000000000000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................20121.00210029000001000022020001100000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC.............................................................................................................................21116.00160102000000000010001100000000000000000000000000001001101000312000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20116.001601100000000000100000001000000000000000000000000000000000000010200000000000000000
..........................................................................................................................GTCG-------------AT-CGTTGCGCTTGCCAGTG.................................................................................................................................................................................................23113.00130700000000000020000000000000000000000000000000000000000000111100000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23112.00120013000000000020000101000000100000000000000000000000000000111000000000000000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................19112.00120050000000000010030100000000000000000000000000000000000000002000000000000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18112.001210100000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCACC............................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000011000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................19111.00112310000000000000000000000000000000000000000000000000000000005000000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................22110.00100050000000000001020000100000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................22110.00100000000000000000000000200000000000000000000000000000000000008000000000000000000
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2119.0090010000000000001002200200000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................TTGTA-CGTTAAGC--AATTG-GT...................................................................................................................................................2019.0090010000000000000001000000000000000000000000000000000000000106000000000000000000
.............................................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC.............................................................................................................................2219.0090113000000000011000100000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2118.0080060000000000000000000000000000000000000000000000000000000001100000000000000000
...........................................................................................................................................AT-CGTTGCGCTTGCCAGTG.................................................................................................................................................................................................1918.0080010000000000000010000000000011200000000000000000000000000002000000000000000000
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1818.0080030000000000012110000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACCA.....................................................................................................2317.0070101000000000001001003000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1816.0060060000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCC..............................................................................................................................................................................1916.0060100000000000000010001000000000000000000000000000000000000003000000000000000000
............................................................................................................................................................................................................TACTGCTGAGCCGGGGCATT................................................................................................................................2016.0061000000000000010001000100000000000000000000000000000000000001100000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATC............................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................2315.0050000000000000000100000100000000000000000000000000000000000002100000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTATT.........................................................................................................................................................................2415.0050000000000000010111100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TACTGCTGAGCCGGGGCATTAAC.............................................................................................................................2314.0040100000000000000001001000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCG..............................................................................................................................................................................1914.0041100000000000000000000000000000000000000000000000000000000011000000000000000000
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTT...............................................................................................................................1914.0040000000000000010000000000000000000000000000000000000000000003000000000000000000
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATT................................................................................................................................1814.0040211000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TCG-------------AT-CGTTGCGCTTGCCAGTG.................................................................................................................................................................................................2214.0040000000000000000001000000000000000000000000000000000000000003000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTCA..........................................................................................................................................................................2314.0040000000000000000000100100000000000000000000000000000000000002000000000000000000
...................................................................................................................................................................TGTCCTGTCACAGCAGTA...........................................................................................................................................................................1814.0040000000000000000000101100000000000000000000000000000000000010000000000000000000
....................................................................................................................................................................................................................................TTGTTGAGCGTCGTTAGC..........................................................................................................1814.0040200000000000000001000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................2113.0030000000000000010000000000000000000000000000000000000000000002000000000000000000
droMoj3
GCT-GC------CTCGACCAAAGGG--GGCC---A------------AGGA--AGGCCCATCTGATTGGA---TTGGATA---------TCC-------------------ATCTAT------C--AATCAACGCGTCTATTAT-AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAG----------------------------------------------------------------------------------------------AAGAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................221159680.001596801570745713711732147406144
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................21174825.0074825264514301924326365216523490
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................2018361.00836112251930123479523103
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGC............................................................................................................................................................................2114145.004145264715139372
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2213541.0035412444812171746163123
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1911337.0013375745207311510
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................231759.00759755916024021114
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................231741.007411531056714492
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................201723.0072362007150
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTC...........................................................................................................................................................................221702.0070212139376040
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA............................................................................................................................221637.0063749913175022
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................211619.00619993335110
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................201279.002791931411682
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................211238.00238407780752
.....................................................................................................................................................................................TTGTAAA-TTAAGC--AATTG-GTA..................................................................................................................................................211206.00206015001910
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC.............................................................................................................................211189.0018927141741
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................211139.0013963457771
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................191116.0011617053847
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTG...........................................................................................................................................................................221106.001065937820
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................191104.0010410300100
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAC..........................................................................................................................................................................23188.00884038730
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................19172.00722110680
...............................................................................................................................................................ATATTGTCCTGTCACAGCAT.............................................................................................................................................................................20145.004530212010
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................18143.0043401112160
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGC...........................................................................................................................................................................22138.00380110360
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGCT...........................................................................................................................................................................22128.00280871120
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................21125.00252300200
...............................................................................................................................................................ATATTGTCCTGTCACAGCAC.............................................................................................................................................................................20124.00240019140
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTG..........................................................................................................................................................................23124.00244051311
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAG..........................................................................................................................................................................23123.0023812750
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTTA..........................................................................................................................................................................23122.0022517810
...............................................................................................................................................................ATATTGTCCTGTCACAGCATA............................................................................................................................................................................21119.00190031150
.............................................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC.............................................................................................................................22119.00191100161
...................................................................................................................................................................TGTCCTGTCACAGCAGTA...........................................................................................................................................................................18118.00180100170
...............................................................................................................................................................ATATTGTCCTGTCACAGCAA.............................................................................................................................................................................20118.00183031011
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................18118.00181201230
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................18118.00186001110
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................22117.00171500020
................................................................................................................................................................TATTGTCCTGTCACAGCAGC............................................................................................................................................................................20117.00171000160
...............................................................................................................................................................ATATTGTCCTGTCACAGCT..............................................................................................................................................................................19117.00170021500
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................24115.0015417210
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTATT.........................................................................................................................................................................24115.0015400650
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGGT...........................................................................................................................................................................22115.0015018510
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAA..............................................................................................................................20113.0013032080
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACAA...........................................................................................................................23112.00120100110
...............................................................................................................................................................ATATTGTCCTGTCACAGCTA.............................................................................................................................................................................20112.00120000120
droGri2
GCA-AA------GTGA------A-A--GGTCATCAAGAAATGTATACAGAT--TT-----------TGGATACTTGGATA-------TATAT-------------------ATATAT-----ATTTA------------AT-CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGCGA-------------------------------------------------------GAA-----------GCAGAG----SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGT............................................................................................................................................................................211731.00731371360
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................221240.0024022911
...............................................................................................................................................................ATATTGTCCTGTCACAGCAG.............................................................................................................................................................................20190.0090864
................................................................................................................................................................TATTGTCCTGTCACAGCAGT............................................................................................................................................................................20126.0026260
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................23124.0024240
................................................................................................................................................................TATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................21118.0018180
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................22116.0016151
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................23112.0012102
................................................................................................................................................................TATTGTCCTGTCACAGCAG.............................................................................................................................................................................19110.0010100
...............................................................................................................................................................ATATTGTCCTGTCACAGCA..............................................................................................................................................................................1917.00770
..................................................................................................................................................................TTGTCCTGTCACAGCAGT............................................................................................................................................................................1813.00330
..................................................................................................................................................................TTGTCCTGTCACAGCAGTA...........................................................................................................................................................................1913.00330
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA............................................................................................................................2212.00211
.................................................................................................................................................................ATTGTCCTGTCACAGCAGT............................................................................................................................................................................1912.00220
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAA..........................................................................................................................................................................2212.00220
...............................................................................................................................................................ATATTGTCCTGTCACAGC...............................................................................................................................................................................1812.00220
.............................................................................................................................TA------------AT-CGTTGCGCTTGCCAGTG.................................................................................................................................................................................................2111.00110
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................2311.00110
................................................................................................................................................................TATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2111.00110
................................................................................................................................................................TATTGTCCTGTCACAGCAGTAT..........................................................................................................................................................................2211.00110
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTT...........................................................................................................................................................................2011.00110
.............................................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC.............................................................................................................................2211.00110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA.........................................................................................................................................................................2411.00110
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGA............................................................................................................................................................................2111.00101
...............................................................................................................................................................ATATTGTCCTGTCACAGCAGG............................................................................................................................................................................2111.00101
................................................................................................................................................................TATTGTCCTGTCACAGCA..............................................................................................................................................................................1811.00110
..............................................................................................................................................................GATATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................2311.00110
.................................................................................................................................................................ATTGTCCTGTCACAGCAGTA...........................................................................................................................................................................2011.00110
..............................................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC.............................................................................................................................2111.00110
.................................................................................................................................................................ATTGTCCTGTCACAGCAG.............................................................................................................................................................................1811.00110
...............................................................................................................................................................ATATTGTCCTGTCACAGCTA.............................................................................................................................................................................2020.50101

Generated: 10/20/2015 at 07:43 PM