ID:

dya_495

 Coordinate:

2R:8137811-8137961 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dyak\GE13408-cds]; exon [dyak_GLEANR_13621:4]; intron [Dyak\GE13408-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCACCTGCGAGTTTTTAATTTAATTGAATATATCATGTGAAATGCACAATTTATAATACAATTTATTCATTCAAATTTCTTTCAATTGTAAAATGTTGAACTAAAAACTAAATCTGTTGCTCATCATACATATTCTCATCTTTAAGAGTTTTTTTGGTTATTTTGATTTCTGAAACATCTCGATTATTTCCGAATTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAAGTGGTGATTGTGG
**************************************************.....................(((((((.....(((((....((((((((.(((((((((((......((((.......................))))...))))))..)))))..)))...)))))..)))))......)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
 M026
head
 V046
embryo
 V058
head
...............................................................................................................................................................................................................GGACAAACTGAAGGAGGGC......................... 19 0 1 4.00 4 3 1 0 0 0 0
..................................................................................................................................................................................................................................ATTGGCGAGAAAGTGGTGATTGTG. 24 0 1 3.00 3 2 0 1 0 0 0
...................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGCGA................. 23 0 1 2.00 2 0 0 1 1 0 0
.......................................................................................................................................................................................................GAAGATCTGGACAAACTGAAGGAG............................ 24 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGC................... 21 0 1 2.00 2 1 1 0 0 0 0
..................................................................................................................................................................................................................................ATTGGCGAGAAAGTGGTG....... 18 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................TCTGGACAAACTGAAGGAGGGCATTGTC................... 28 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................CAAACTGAAGGAGGGCATT...................... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GATCTGGACAAACTGAAGGA............................. 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TTTGGTTATTTTGATGTATGA.............................................................................. 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................................................................................CTGGACAAACTGAAGGAGGGC......................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................GCGAGAAAGTGGTGATTGTGG 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GACAAACTGAAGGAGGGC......................... 18 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................AGAAGATCTGGACAAACTGAAGGA............................. 24 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................GAAGATCTGGACAAACTGAAGG.............................. 22 2 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGCG.................. 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................CATTGGCGAGAAAGTGGTGATTGTG. 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TCTGGACAAACTGAAGGAGGGC......................... 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................GGCATTGGCGAGAAAGTGGTG....... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................TCTTTGGTTATTTTGATTTATGA.............................................................................. 23 2 1 1.00 1 0 0 0 0 0 1
................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGC................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................GAAGATCTGGACAAACTGAAGGAGGGC......................... 27 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGCG.................. 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................GAATTAAAAACTAAATCTGTT..................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................ATTGGCGAGAAAGTGGTGA...... 19 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................CTGGACAAACTGAAGGAGG........................... 19 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................AGATCTGGACAAACTGAAGGAGGGC......................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGCGA................. 26 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................AGAAGATCTGGACAAACTGAAGGAGGG.......................... 27 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................GCATTGGCGAGAAAGTGGTG....... 20 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................GAAGATCTGGACAAACTGAAGGAGGG.......................... 26 2 1 1.00 1 1 0 0 0 0 0
................................................................GTTCATTCAAATTTCTGTC........................................................................................................................................................................ 19 2 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................TTTTTGGTAATATAGATTTCTG............................................................................... 22 3 5 0.20 1 0 0 0 0 1 0
......................................................................................................................................................TCTTTGGTTATCTAGATTTCTG............................................................................... 22 3 7 0.14 1 0 0 0 0 1 0
......................................................................................................................................................TCTTTGGTTATCTTGCTTTCTG............................................................................... 22 3 12 0.08 1 0 0 0 0 1 0
...............................................................GGTTCATTCAAATTTCTGTC........................................................................................................................................................................ 20 3 18 0.06 1 0 1 0 0 0 0
..............................................................TGGTTCATTCAAATTTCT........................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GGTGGACGCTCAAAAATTAAATTAACTTATATAGTACACTTTACGTGTTAAATATTATGTTAAATAAGTAAGTTTAAAGAAAGTTAACATTTTACAACTTGATTTTTGATTTAGACAACGAGTAGTATGTATAAGAGTAGAAATTCTCAAAAAAACCAATAAAACTAAAGACTTTGTAGAGCTAATAAAGGCTTAAACGTCTCTAGACCTGTTTGACTTCCTCCCGTAACCGCTCTTTCACCACTAACACC
**************************************************.....................(((((((.....(((((....((((((((.(((((((((((......((((.......................))))...))))))..)))))..)))...)))))..)))))......)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 M056
embryo
...........................................................................................................................................................................................AATGCTAAAACGTCTCTGGA............................................ 20 3 11 0.55 6 6 0 0
..........................TTAAATAGTACACTTTTCGT............................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0
...........................................................................................................................................................................................AATGCTAAAACGTCTCTGG............................................. 19 3 20 0.35 7 7 0 0
............................................................................................................................................................................................ATGCTAAAACGTCTCTGGAC........................................... 20 3 9 0.22 2 2 0 0
...............................................................................................................................................................................TTAGAGCTAATAAAGGTTT......................................................... 19 2 6 0.17 1 0 1 0
..............................................................................................................................................................................................GCTAAAACGTCTCTGGACA.......................................... 19 3 20 0.10 2 2 0 0
..............................................................................................CAACTTGGTATTTGATTTA.......................................................................................................................................... 19 2 15 0.07 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:8137761-8138011 + dya_495 C------------CACCTGCGAGTTTTTAATTTAATTGAATATATCATG----TGAAATGCACAATTTATAA-------------------------------------------------------------------------TAC--AATTTATTCATTCAAATTTCTTTCAATTGTAAAATGTTGAACTAAAAACT-------AAATCTGTTGCTCA-------------------------TCATACA-T------------------------ATTCTC--ATCTTTAAG--AG--------------------TTTTTTTGGTTATTTTGATTTCTGAAAC---A-TCTCGATT-------ATTTC----CGAATTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGG
droEre2 scaffold_4845:16991163-16991420 + C------------CACCTGGGAGTTTCTAAATTAATTAAATATACCACGCCGAGGAATTGCTTT------AA-------------------------------------------------------------------------TTC--AATG----CATTCGAATTTATTTCAATTGTAAAATTAAAAATTAAAAACTAAAAACTATTTGTGTTGCCCACTGA---------------T-----GTATTC-------------------------AGTTTCCA--ACCCTCTATTTTG--------------------CTATTTTGGTAATTTTGATTTCTAGAAC---T-TCCCGATT-------GTCTT-----GAATTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGG
droSec2 scaffold_1:6347431-6347630 - C------------CACCTGAAAGTTTTTGAATAAATTAAGTATCTCATGCCAATGACGTGCCCATTTT----------------------------------------------------------TTGTGCGAATTT----------------------------------TTAATTCTAGAATTAAAT-----AAACT--------------------------------------------------------------------------------------------TAAG--AG--------------------CAATTTTGGTCATTGTGATTTCTAGAAC---T-TCTCGATT-------TTTTT----GGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGG
droSim2 2r:9510123-9510327 - dsi_967 C------------CACCTGAAAAGTTTTAAATAAATTAAGTATCTCATGCCAATGACGTGCCCATTTT----------------------------------------------------------TTGTGCGAATTT----------------------------------GTAATTCTAGAATTAAATTCTAAAAACT--------------------------------------------------------------------------------------------TAAG--AG--------------------CCATTTTGGTCATTTTGATTTCTAAAAC---T-TCTCGATT-------TTTTT----GGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATTGTGG
dm3 chr2R:8831594-8831811 - C------------CACCTGAAAGTTTTTAAATAAATTAAATATCTCATGCCAGTGACGTGAACTTTTT----------------------------------------------------------TTGTGCGAATTT-------TAC--AATGTATTTATTCAAATTCCTTTTAATTCTAGAATTAAATTCTAAAGACT--------------------------------------------------------------------------------------------TTAG--AG--------------------T----------------ATTTTTATAAC---T-CCTCGATT-------TTTTTCTTTGGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAA--------------------------------------------------------------------TAGTGATTGTGG
droEug1 scf7180000409672:3801526-3801833 + T------------CAATTAAGAGTTTTTTGAATAATTATTTATTCCATGCAATGATAGTGATCTT------ATATTAACAACTTAATTAATTTGGATGGGAGAAATGTAATCAAATTTTTAACTTTTCGTAAGAAAGATTAACTTTACTGGACTT-----------TTTCTTT-------------------------------------------------------CAAAACCAAAACAATA-------TTAAACTTTTTTTCTTAGTTTTTTGTAGTTAAGT--ACTTTAATTTTTA--------------------ATTTCTTAATAATATTTA-ATCTAAACC---T-TCTTTATT-------TTTAT-----CCCCTTCCAGAGACTTGGACAAACTAAAAGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TCGTAATCGTGA
droBia1 scf7180000302292:1887505-1887651 - GTTTTTTAGGATGCACTTGAGATTATTAAAATAA-TTCATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------TTTTTCATTATAATTTTTATAATGTGT-CCTTGGTT-------TTTTT---TACCCCTTTCAGAGACCTGGACAAAGTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATTGTGA
droTak1 scf7180000414717:42718-42850 - A------------AAATAAAAA-----------AATAAAAAATTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTATA-T------------------------ATTACC--ATCTTATAG--AT--------------------T----------------ACCTTA------------CTAACTGT--TTGTTCTA----CTTTCCTTCAGAGATCTCTCCAAGATGGAGGATGGCCTGGCTGAGAAAG--------------------------------------------------------------------TGGTGAT---GT
droEle1 scf7180000491215:209700-209900 + TTTAT---------TCTTTATAATTTTTTGATTTTTGAAGTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATAACAAAACTAATGCAATTGTTCTTATAATACTTTC----------------AGTTTTAGATACT--TAAA--TGTTTTCTTTATTTTACTTAATT------AACAA----------TGAACT---TTTTTTGATT-------TTTTT-----CCACTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGG
droRho1 scf7180000779957:63279-63384 + T------------TTCTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCCAATT------AACAA----------AAAAAT---T-TCTTGATT-------ATTTT----CCCGCTTCCAGAGATCTAGACAAACTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGG
droFic1 scf7180000454066:443350-443435 + A------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT------------------------------TTAATTATTTTTATTTTT----CCCGCCCGCAGAGATCTGGACAAACTGAAGGAGGGCATCGGCGAGAAAG--------------------------------------------------------------------TGGTGATCGTGG
droKik1 scf7180000302670:263902-263954 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGATCTGGACAAGCTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGG
droAna3 scaffold_13266:6301392-6301451 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGAACAGAGATCTGGACAAGCTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTGA
droBip1 scf7180000395839:457473-457540 - A------------T--------------------------------------------------------------------------------------------------------------------------TT----------------------------------CCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAACAGAGATCTGGACAAGCTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTGA
dp5 3:5599802-5599858 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGATCTGGACAAGCTGAAGGAGGGAATCGGCGAGAAGG--------------------------------------------------------------------TGGTGATAGTCA
droPer2 scaffold_2:5794426-5794482 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGATCTGGACAAGCTAAAGGAGGGAATCGGCGAGAAGG--------------------------------------------------------------------TGGTGATAGTCA
droWil2 scf2_1100000004510:1064087-1064143 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGGGACTTGGATAAACTGAAGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------TGGCCATAGTTA
droVir3 scaffold_12875:570148-570204 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGGATCTGGATAAGGTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGCCATTGTTA
droMoj3 scaffold_6496:12779079-12779174 + T------------CATTTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCAGATT-------C---T-TATTAATC-------CTCTT----CAATCCCGCAGAGATTTATCGAAAATGGAGGACGGCCTGGGCGAGAAGG--------------------------------------------------------------------TTGTGATCTTTG
droGri2 scaffold_15245:10394412-10394576 + T------------AATTGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCTTAAAGCTAATT---------------------------------------------------------------------------------------------------------------------CAATT-------GTCAC----TTGCTCTGCAGGGATCTGGATAAGGTAAAGGAGGGCATTGGCGAGAAGGTGTGTATATGAAGAGTAATCATTAAATTCTTATCTAATCCAATGCTCAACGTCTCTTCCTTGTCTAGGTGGCAATTGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
C------------CACCTGCGAGTTTTTAATTTAATTGAATATATCATG----TGAAATGCACAATTTATAA-------------------------------------------------------------------------TAC--AATTTATTCATTCAAATTTCTTTCAATTGTAAAATGTTGAACTAAAAACT-------AAATCTGTTGCTCA-------------------------TCATACA-T------------------------ATTCTC--ATCTTTAAG--AG--------------------TTTTTTTGGTTATTTTGATTTCTGAAAC---A-TCTCGATT-------ATTTC----CGAATTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................GGACAAACTGAAGGAGGGC.............................................................................................1914.00401000030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTG.2413.00300100020000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGCGA.....................................................................................2312.00210100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGC.......................................................................................2112.00201000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGAGAAAG--------------------------------------------------------------------TGGTG.......1811.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGAAGGAGGGCATT..........................................................................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGACAAACTGAAGGA.................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAACTGAAGGAGGGC.............................................................................................2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGG2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAGGGC.............................................................................................1811.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGCG......................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTG.2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACAAACTGAAGGAGGGC.............................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTG.......2111.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGC.......................................................................................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGCG......................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGAGAAAG--------------------------------------------------------------------TGGTGA......1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAACTGAAGGAGG...............................................................................................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGGACAAACTGAAGGAGGGC.............................................................................................2511.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAGGGCATTGGCGA.....................................................................................2611.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGCGAGAAAG--------------------------------------------------------------------TGGTG.......2011.00101000000000
droEre2
C------------CACCTGGGAGTTTCTAAATTAATTAAATATACCACGCCGAGGAATTGCTTT------AA-------------------------------------------------------------------------TTC--AATG----CATTCGAATTTATTTCAATTGTAAAATTAAAAATTAAAAACTAAAAACTATTTGTGTTGCCCACTGA---------------T-----GTATTC-------------------------AGTTTCCA--ACCCTCTATTTTG--------------------CTATTTTGGTAATTTTGATTTCTAGAAC---T-TCCCGATT-------GTCTT-----GAATTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGT........2611.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGCGAGAAAG--------------------------------------------------------------------TGGT........1811.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................GGACAAACTGAAGGAGGGCATTGGCG......................................................................................2611.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAAACTGAAGGAGGGC.............................................................................................2311.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAGGAGGGCATTGGC.......................................................................................2011.0010000100
......................................AATATACCACGCCGAGGAATTGCTTT------....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
droSec2
C------------CACCTGAAAGTTTTTGAATAAATTAAGTATCTCATGCCAATGACGTGCCCATTTT----------------------------------------------------------TTGTGCGAATTT----------------------------------TTAATTCTAGAATTAAAT-----AAACT--------------------------------------------------------------------------------------------TAAG--AG--------------------CAATTTTGGTCATTGTGATTTCTAGAAC---T-TCTCGATT-------TTTTT----GGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGGCGAGAAAG--------------------------------------------------------------------TGGT........2012.0020200
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGAGAAAG--------------------------------------------------------------------TGGTGATTGTG.2411.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAGGAAGGCATTGGCGAG....................................................................................2311.0011000
droSim2
C------------CACCTGAAAAGTTTTAAATAAATTAAGTATCTCATGCCAATGACGTGCCCATTTT----------------------------------------------------------TTGTGCGAATTT----------------------------------GTAATTCTAGAATTAAATTCTAAAAACT--------------------------------------------------------------------------------------------TAAG--AG--------------------CCATTTTGGTCATTTTGATTTCTAAAAC---T-TCTCGATT-------TTTTT----GGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATTGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................AGAGACCTGGACAAACTGAAGGAAG...............................................................................................2511.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGAAGG--------------------------------------------------------------------TGGTGATTGTG.2111.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAACTGAAGGAAGGC.............................................................................................2111.00101000000000000000
dm3
C------------CACCTGAAAGTTTTTAAATAAATTAAATATCTCATGCCAGTGACGTGAACTTTTT----------------------------------------------------------TTGTGCGAATTT-------TAC--AATGTATTTATTCAAATTCCTTTTAATTCTAGAATTAAATTCTAAAGACT--------------------------------------------------------------------------------------------TTAG--AG--------------------T----------------ATTTTTATAAC---T-CCTCGATT-------TTTTTCTTTGGAATTTGCAGAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAA--------------------------------------------------------------------TAGTGATTGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGAGAAAA--------------------------------------------------------------------TAGTGATTGTG.2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TAAC---T-CCTCGATT-------TTTTTCTTTGGAATT...........................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ACAAACTGAAGGAAGGCATTGGCGAG....................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAAGGC.............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGACCTGGACAAACTGAAGGAAGGC.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAACTGAAGGAAGGC.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGGAAGGCATTGGCGAGA...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGAAGGAAGGCATTGGC.......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................AGTGACGTGAACTTTTT----------------------------------------------------------TTT.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GATT-------TTTTTCTTTGGAATTTGCAG......................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGGAAGGCATTGGC.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGAAGGAAGGCATTGGCG......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGGCATTGGCGAGAAA.................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAAGGCATTGGC.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAAGGCATTGGCGA.....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAAGGCATTGGCGAG....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAAA--------------------------------------------------------------------TAGTGATTGTGG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GACAAACTGAAGGAAGGTG............................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
T------------CAATTAAGAGTTTTTTGAATAATTATTTATTCCATGCAATGATAGTGATCTT------ATATTAACAACTTAATTAATTTGGATGGGAGAAATGTAATCAAATTTTTAACTTTTCGTAAGAAAGATTAACTTTACTGGACTT-----------TTTCTTT-------------------------------------------------------CAAAACCAAAACAATA-------TTAAACTTTTTTTCTTAGTTTTTTGTAGTTAAGT--ACTTTAATTTTTA--------------------ATTTCTTAATAATATTTA-ATCTAAACC---T-TCTTTATT-------TTTAT-----CCCCTTCCAGAGACTTGGACAAACTAAAAGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TCGTAATCGTGASizeHit CountTotal NormTotal
No Reads
droBia1
GTTTTTTAGGATGCACTTGAGATTATTAAAATAA-TTCATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------TTTTTCATTATAATTTTTATAATGTGT-CCTTGGTT-------TTTTT---TACCCCTTTCAGAGACCTGGACAAAGTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATTGTGASizeHit CountTotal NormTotal
No Reads
droTak1
A------------AAATAAAAA-----------AATAAAAAATTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTATA-T------------------------ATTACC--ATCTTATAG--AT--------------------T----------------ACCTTA------------CTAACTGT--TTGTTCTA----CTTTCCTTCAGAGATCTCTCCAAGATGGAGGATGGCCTGGCTGAGAAAG--------------------------------------------------------------------TGGTGAT---GTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTAT---------TCTTTATAATTTTTTGATTTTTGAAGTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATAACAAAACTAATGCAATTGTTCTTATAATACTTTC----------------AGTTTTAGATACT--TAAA--TGTTTTCTTTATTTTACTTAATT------AACAA----------TGAACT---TTTTTTGATT-------TTTTT-----CCACTTGCAGAGATCTGGACAAACTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGGSizeHit CountTotal NormTotal
No Reads
droRho1
T------------TTCTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCCAATT------AACAA----------AAAAAT---T-TCTTGATT-------ATTTT----CCCGCTTCCAGAGATCTAGACAAACTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
A------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT------------------------------TTAATTATTTTTATTTTT----CCCGCCCGCAGAGATCTGGACAAACTGAAGGAGGGCATCGGCGAGAAAG--------------------------------------------------------------------TGGTGATCGTGGSizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGATCTGGACAAGCTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTGATCGTGGSizeHit CountTotal NormTotal
No Reads
droAna3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGAACAGAGATCTGGACAAGCTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGCGAGAAGG--------------------------------------------------------------------TGGTC.......2012.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTGGCGAGAAGG--------------------------------------------------------------------T...........1812.002010010
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAAGGAGGGCATTGGCGAGA...................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACAAGCTGAAGGAGGGC.............................................................................................2211.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTGA2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTG.2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGACAAGCTGAAGG..................................................................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------T...........2411.001000001
droBip1
A------------T--------------------------------------------------------------------------------------------------------------------------TT----------------------------------CCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAACAGAGATCTGGACAAGCTGAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGTCATCCTGASizeHit CountTotal NormTotal
No Reads
dp5
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGATCTGGACAAGCTGAAGGAGGGAATCGGCGAGAAGG--------------------------------------------------------------------TGGTGATAGTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATCGGCGAGAAGG--------------------------------------------------------------------T...........1812.0020000000002
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAAGGAGGGAATCGG........................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAGCTGAAGGAGGG..............................................................................................1911.0010000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGAAGGAGGGAATCGG........................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAAGCTGAAGGAGGG..............................................................................................2211.0010000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGGAGGGAATCGG........................................................................................1911.0010100000000
droPer2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGGGATCTGGACAAGCTAAAGGAGGGAATCGGCGAGAAGG--------------------------------------------------------------------TGGTGATAGTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAAGCTAAAGGAGGGA.............................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAAAGGAGGGAATCGGCGAG....................................................................................2411.001010000
droWil2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGGGACTTGGATAAACTGAAGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------TGGCCATAGTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........2817.00700700
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........2414.00400310
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGTGAAAA..................................................................................2614.00400310
................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........2713.00302100
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGGCATTGGTGAAAA..................................................................................2113.00300210
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........2013.00300210
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGGAGGGCATTGGTGAAAA..................................................................................2312.00200200
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAGGAGGGCATTGGTGAAAA..................................................................................2512.00200110
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGT.......................................................................................2112.00201100
.....................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATAAACTGAAGGA.................................................................................................2012.00201100
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........1812.00200200
......................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGATAAACTGAAGGAGGGCATTG.........................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTGAAGGAGGGCATTGGTGAAAA..................................................................................2811.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................GATAAACTGAAGGAGGGC.............................................................................................1811.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACTGAAGGAGGGCATTGGTGAAAA..................................................................................2711.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGTA......................................................................................2211.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCATTGGTGAAAA..................................................................................1811.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGATAAACTGAAGGAGGGCATT..........................................................................................2811.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................GGATAAACTGAAGGAGGGCATTGGT.......................................................................................2511.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................GATAAACTGAAGGAGGGCATT..........................................................................................2111.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGTGA.....................................................................................2311.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTGAAGGAGGGCATT..........................................................................................2011.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGGAGGGCATTGGTGAAA...................................................................................2511.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGGCATTGGTGAAAAGG--------------------------------------------------------------------T...........2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAGGGCATTGGTGAAAA..................................................................................2211.00100100
droVir3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGGATCTGGATAAGGTCAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGCCATTGTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------T...........2412.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAAGGAGGGCATTGGCGAGAAG.................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGCCATT....2711.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGATAAGGTCAAGGAGGGC.............................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGATAAGGTCAAGGAGGG..............................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCAAGGAGGGCATTGGC.......................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGC........2111.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGATAAGGTCAAGGAGGGCATT..........................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGC........2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATAAGGTCAAGGAGGGCATT..........................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTGGCGAGAAGG--------------------------------------------------------------------TGGCCATT....2511.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
T------------CATTTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCAGATT-------C---T-TATTAATC-------CTCTT----CAATCCCGCAGAGATTTATCGAAAATGGAGGACGGCCTGGGCGAGAAGG--------------------------------------------------------------------TTGTGATCTTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T------------AATTGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCTTAAAGCTAATT---------------------------------------------------------------------------------------------------------------------CAATT-------GTCAC----TTGCTCTGCAGGGATCTGGATAAGGTAAAGGAGGGCATTGGCGAGAAGGTGTGTATATGAAGAGTAATCATTAAATTCTTATCTAATCCAATGCTCAACGTCTCTTCCTTGTCTAGGTGGCAATTGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGGCATTGGCGAGAAGGTGGCA...........................................................................2711.00101
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGGCATTGGCGAGAAGGTGG.............................................................................2411.00110

Generated: 05/17/2015 at 10:40 PM