ID:

dya_494

 Coordinate:

2R:8127523-8127673 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.2 -14.0 -13.9 -13.3

Flybase annnotation

Antisense to exon [dyak_GLEANR_13619:1]; CDS [Dyak\GE12508-cds]; exon [dyak_GLEANR_12756:1]; Antisense to CDS [Dyak\GE13405-cds]; Antisense to intron [Dyak\GE13405-in]; intron [Dyak\GE12508-in]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------#######---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGACCTAAATCAACAACACACAAAACTCACACACACACACAACATGGGAGGTGAGAACTGAAGTGCAAAGTTTGTGACTAAGATAATTCCGTCGAAAAGGAAAGCATTGTGTCGCAATTAGTCGTGACAAGTGGCCAAGTGTCATCGATACTCCGCGCACCTGACAGCCGAAATCCCCCGGAGCTTTGGTAGCTTTCCATAGATCCGGCGATTTTACCCCCGGACAGATAAAAAAACACCGTGTGTGTCGT
*****************************************************************************....(((.........((.........((((.((((((........))))))))))........)))))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
 M026
head
 V046
embryo
.............................................................................CTAAGATAATTCCGTCGAAAAGGA...................................................................................................................................................... 24 0 1 3.00 3 2 1 0 0 0
....................................................................................................................ATTAGTCGTGACAAGTGGCCAAGTGTCATC......................................................................................................... 30 0 1 2.00 2 2 0 0 0 0
...........................................................................................................................GTGACAAGTGGCCAAGTGTC............................................................................................................ 20 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................GTAGCTTTCCATAGATCCGGCG......................................... 22 0 1 2.00 2 0 2 0 0 0
.............................CACACACACACAACATGGGA.......................................................................................................................................................................................................... 20 0 2 2.00 4 1 3 0 0 0
.......................................................................................TCCGTCGAAAAGGAAAGCATTGTGTCGC........................................................................................................................................ 28 0 1 2.00 2 1 1 0 0 0
.......................................................AACTGAAGTGCAAAGTTTGTGA.............................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0
....................................................................................................................ATTAGTCGTGACAAGTGGCCAAGTGT............................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
........................................................................................................CATTGTGTCGCAATTAGTCGTGA............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
....................................................GAGAACTGAAGTGCAAAGT.................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................AGCCGAAATCCCCCGGAGCTTTG............................................................... 23 0 1 1.00 1 0 1 0 0 0
.........................CTCACACACACACACAACATGGG........................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
....................................................................................AATTCCGTCGAAAAGGAAAGCATTGTGT........................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................ACTAAGATAATTCCGTCGAAAAGGA...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................AGTTTACCCCCGGACAGAT...................... 19 1 1 1.00 1 0 0 1 0 0
.........................CTCACACACACACACAACATGGGA.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...........................................................................GACTAAGATAATTCCGTCGAAAAGGA...................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................GTGTCGCAATTAGTCGTGA............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.............................................................................CTAAGATAATTCCGTCGAAAAGGAAAGC.................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
....................................................................................................AAAGCATTGTGTCGCAATTAGTCGT.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.........................................................................GTGACTAAGATAATTCCGTCGAAAAGGA...................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................GCACCTGACAGCCGAAATCCCCCGGAGCT.................................................................. 29 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................GATACTCCGCGCACCTGACAGCCGAA............................................................................... 26 0 1 1.00 1 0 1 0 0 0
.....................................................................GTTTGTGACTAAGATAATTCCGTC.............................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................TCGATACTCCGCGCACCTGAC...................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.................................................GGTGAGAACTGAAGTGCAAA...................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................AGCTTTCCATAGATCCGGC.......................................... 19 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................ACCCCCCGGAGCTTTGGTAGCT......................................................... 22 1 1 1.00 1 0 0 1 0 0
.........................CTCACACACACACACAACAT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
..........................TCACACACACACACAACATGGG........................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.............................CACACACACACAACATGGGAG......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................AAAACTCACACACACACACAACATGG............................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
.....................................................................................................AAGCATTGTGTCGCAATTAGTC................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
........................................................ACTGAAGTGCAAAGTTTGTGACTAA.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................AAACTCACACACACACACAACAT.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0
...........................................................................GAATAAGATAATTCCGTCGAAAAGGA...................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0
..................................................................................................................................................GATACTCCGCGCACCTGACAGCCGA................................................................................ 25 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................AGTCGTGACAAGTGGCCAAGTGTC............................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.................................................GGTGAGAACTGAAGTGCAAAGTTTGTGA.............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................CATTGTGTCGCAATTAGTCGT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...............ACACACAAAACTCACACACACAC..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................TTGGTAGCTTTCCATAGATCCGGCGAT....................................... 27 0 1 1.00 1 1 0 0 0 0
..............................ACACACACACAACATGGGAG......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.............................................................................CTAAGATAATTCCGTCGAAAAG........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................GTCATCGATACTCCGCGCACCT......................................................................................... 22 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................................................TTGGTAGCTTTCCATAGATCCGGCGA........................................ 26 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................GTCATCGATACTCCGCGCACCTGACAGCC.................................................................................. 29 0 1 1.00 1 0 0 0 1 0
...........AACAACACACAAAACTCACACACAC....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.................................................GGTGAGAACTTAAGTGCAAA...................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
AGACCTAAATCAACAACACACAAAA.................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.........................................................................................CGTCGAAAAGGAAAGCATTGTGTCGCA....................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
.................................................................................GATAATTCCGTCGAAAAGGAAAGC.................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
......................AAACTCACACACACACACAAC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
.............................................................................CTAAGATAATTCCGTCGAAAAGGAAA.................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................CTGAAGCGCAAAGTTTGTGA.............................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................TTAGTCGTGACAAGTGGCCAAGT............................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................ATTTTACCCCCGGACAGATAAAAA................. 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................GCATTGTGTCGCAATTAGTCGTGACAAGT....................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.............................................................................CTAAGATAATTCCGTCGAAAAGGAAAG................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........CAACAACACACAAAACTCACACACACACA.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0
............................................................................ACTAAGATAATTCCGTCGAAAAGGAAA.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................ACACACACACACAACATGGGAG......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
................................ACACACACAACATGGGAGG........................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................TTAGTCGTGACAAGTGGCCAA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..............................ACACACACACAACATGGGAGGT....................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..........CAACAACACACAAAACTCACAC........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.........................................................................................................ATTGTGTCGCAATTAGTCGTG............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................................GTCGCAATTAGTCGTGACAAGTGGC.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................AAACTCACACACACACACAACATGG............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
......AAATCAACGACACACAAAACTCA.............................................................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
.................................CACACACAACATGGGAGGTGA..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................GTGAGAACTGAAGTGCAAAGT.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................GGTAGCTTTCCATAGATCCGGCGAT....................................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................GCAATTAGTCGTGACAAGTGGCC................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
....CTAAATCAACAACACACAAAA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
........................ACTCACACACACACACAACAT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................GATAAAAAAACACCGTGTGT..... 20 0 1 1.00 1 1 0 0 0 0
........................................AACATGGGAGGTGAGAACTGAAGTGC......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................AACTCACACACACACACAACATGGGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................AAAACTCACACACACACACAACATGGGA.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
........................................................................................................................................AAGTGTCATCGATACTCCGCGC............................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.........................................................CTGAAGTGCAAAGTTTGTGACTAA.......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................AAAAGGAAGCATTGTGTCGC........................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0
.............................CACACACACACAACATGGGAGA........................................................................................................................................................................................................ 22 1 2 0.50 1 0 1 0 0 0
............................ACACACACACACAACATGGGAGA........................................................................................................................................................................................................ 23 1 2 0.50 1 0 1 0 0 0
..............................ACACACACACAACATGGGA.......................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 1

Anti-sense strand reads

--------------------------------------#######--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTGGATTTAGTTGTTGTGTGTTTTGAGTGTGTGTGTGTGTTGTACCCTCCACTCTTGACTTCACGTTTCAAACACTGATTCTATTAAGGCAGCTTTTCCTTTCGTAACACAGCGTTAATCAGCACTGTTCACCGGTTCACAGTAGCTATGAGGCGCGTGGACTGTCGGCTTTAGGGGGCCTCGAAACCATCGAAAGGTATCTAGGCCGCTAAAATGGGGGCCTGTCTATTTTTTTGTGGCACACACAGCA
*********************************************************************************************************....(((.........((.........((((.((((((........))))))))))........)))))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V058
head
 M056
embryo
.....................................................................................................................................................TGGGGGGCGTGGACTGT..................................................................................... 17 2 7 0.14 1 1 0
.....................................................................................................................................................TAAGGGGCGTGGACTGT..................................................................................... 17 2 10 0.10 1 1 0
..................................................................................................................................................................................GCGTCAAAACCATCCAAAGG..................................................... 20 3 18 0.06 1 1 0
.........................................................................................................................................................................................................CTAGCCAGCTAACATGGG................................ 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:8127473-8127723 - dya_494 AGACCTAAATCAACAACACACAAAACTCA-CACACACACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-TGTGACTAAGATAATTCCGTCGAAAAGGAAAGCATTGTGTCGCAATTAGT----CGTGACAAGTG--------GCC-AAGTGTCATCGATACT---C-CGCGCACCTGACAGCCGAAATCCCC-CGGAGCTTTGGTAGCTTTC-CATAGATCCGGCG--ATTTTACCCCCGG-------ACAGATAAA-AA----AACA----------C--CGTGTGTGT-----CGT
droEre2 scaffold_4845:16981660-16981882 - AGACCTAAATCAACA---CATAAAACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GCT-AGTGACTAAGATAATTTCGGCAAAAACGAAAGCAAAGTGCCGCAATTAGT----CGTGACAAGTGGCCAAGTGGCC-AAGTGTCATCGATACT---C-CGCGCAGGTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CACAGATCCAGCG--ATTTTACCCC------------------------------------------------------------
droSec2 scaffold_1:6356876-6357109 + AGACCTAAATCAACA---CACAGAACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGTTAATTCCGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-TAGTGTCATCGATACT---C-CGAGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAGATAAA-AGA---A--A----------C--C----------------
droSim2 2r:9519622-9519855 + AGACCTAAATCAACA---CACAAGACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGTTAATTCCGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-AAGTGTCATCGATACT---C-CGAGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAGATAAA-AGA---A--A----------C--C----------------
dm3 chr2R:8841122-8841362 + AGACCTAAATCAACA---TACAAAAAAAG-CACACAAATACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGATAATTCTGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-AAGTGTCATCGATACT---C-CGCGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAAATAAA-AGACAAAAAA----------C--C----------------
droEug1 scf7180000409672:3791703-3791956 - AAACCTAAGTCAACA---ACTAAA-----------GAAAACACCATGGG--AGGTGAGAAAA------ATG------------------AGTGC------AAACTACTTA-GTT-AGTGACTAAGATTATTCCAGTGAAAACGAAAACTTAGTGCCATAATTAGC----AATGACAGGTGGCC-----GCC-AAGTGTCATCGATACT---C-TGCTCACCTGACACCCGAAATCCCTTTGGAGCTTTGGAAGCTTTC-CATAGATCCAACTAGATTTCACACCCGG-------CTAGATAACGAA----AATAG--A------C--AGAGTGGGG-----AG-
droBia1 scf7180000302292:1897453-1897673 + AGACCTAAATCAAG----CAAGGAACACA-CACTCAAAAGCAACATGGG--AGGTGAGAA------------------------------------------AG----TA-GTT-AGTGACTAAGATCATTCCTGCGAAAA------CTGGGTGCCATAATTGGC----CG---------------------AGGTGTCATCGATACT---C-CGCTCACCTGACAGCCCAAATCCCT-GGGAGCTTTGGAAGCTTTC-CGCAGATCCGGCG--ATATCACACCCGG-------CTAGATAAC-AA----AACAG--A------C--AGAGTGGGT-----C--
droTak1 scf7180000415762:287002-287236 - AGACCTAAATCAACA---CATAC-----G---AAAAGAAACAACATGGG--AGGTGAGAA--------ACC-----------------AAGTGA------AAAG----TA-GTT-AGTGACTAAGATTATTCCTGTGAAAA--AAAACACAGTGCCATAATTAGC----CATGACAAGTG--------GCCAAAGTGTCATCGATACT---C-CGCTCACCTGACAGCCCAAATCCCT-TGGAGCTTTGGAAGCTTTC-CATAGATCCGCCG--ATTTCACACCCGG-------CCAGATAAG-GA----AATAG--A------C--AG---------------
droEle1 scf7180000491215:198657-198888 - AGACCTAAATCAACA---CA----------------ACAGCAACATGGG--AGGTGAGAA--------AAG-----------------TCGTGT------AAAG----TA-GTTTGGTGACTAAGATTATTCCTGCTAAT-----GGCACAGTGCCATAATTAGT----TGTGACAAGTG--------GCC-AAGTGTCATCGATAGT---C-CGCTCACCTGACAGCCGAAATCCCC-TGGAGCTTTGGAAGCTTTC-CATAGATCCGCCG--ATTTCACACCTGG-------TCAGATAAC-GA----AATAG--A------C--AGAGTGGGT-----C--
droRho1 scf7180000779957:51708-51962 - ACCCCTAAATCAACA---CAAACAGCCAAAAACACAACAGCAACATGGG--AGGTGAGAA--------TAG-----------------TTGTGA------TAAG----TT-ATT-TGTGACTAAAATTATTCCTGCGAAGA-----ACCCAGTGACATAATTAGC----CATGACAGGTG--------GCC-AAGTGTCATCGATGGC---T-TGCTCACCTGACAGCCGAAATCCCC-TGGAGCTTTGGAAGCTTGC-CGACGATCCAACG--ATTTCACTAGCTAAATAAATATAGATAAG-AA----AATAG--A------C--AGAGTGGTT-----CA-
droFic1 scf7180000454066:430316-430552 - GGACCCAAATCAACA---CAAAAAACACA---CAT----CAAACATGGG--AGGTGAGAAAAAAATAAAAC-----------------AAGTGA------AAAA----TA-GTG-TGTGACTAGGAGTATTTACCTGGAATC----GCTGTGTTCCATAATTAAA-------------------------C-AAGTGCCATCGATACT---CAGGCTCACCTGACAGTTCAAATCCCC-CGGAGCTTTGGAAGCTTTC-CATAGATCCGGCG--ATATTTCACCCCA-------ACTGATAAG-AA----AATAG--A------C--AGAGTGGGG-----C--
droKik1 scf7180000302639:500437-500631 - AGACCCAAGTCAGCA---AAC----------------ACACAACATGGG--AGGTGAGAA--------AAGTGACG--------ATCGGGGTGTGACC-----------------------CCCCACAATTCCTGCGAAAA--AAAGC--------------GAC----CATGACAACT-----------------AGTATCGATAGT---A-C---CACCTGACAGCCGTAATCCCT-TGGAGCTTTGGAAGCTTTC-CACAGATCTGGCG--ATTTCACACCGGG------AATAGATAAT-AA----AACA------------------------------
droAna3 scaffold_13266:6311316-6311531 + GAAACCAAATCAA-----------------------------ACATGAC--AGGTGAGAA--------GTGCGATAGAGGATAGGCCGAGGTGTGAACTGAAAG----TAAATT-AGAG---------ATTCCTG-----------------TGACATCATTAGC----TGTGACAAGTG--------TTA-AAGTACCATCGATATTTGCC-AGTCAACTTGACAGTTGAAATCCCT-TGAAGCTTTCCTAGCTTTC-CA--------GCCAAAT--CT-CCCCCG-------AAAGATAAT-GGCTAAAATAT--A------T--AGA-----------C--
droBip1 scf7180000395839:466318-466544 + GAACCCAAATCAA------------------------ACACAACATGAC--AGGTGAGAA--------AAGCAACAGGAGA---GTCGAGGTGTGAC---AAAG----TAAATT-TGAG---------ATTCCTGTGAACA-----CCATTGTGACATCATTAGC----CGTGACAAGTG--------TTA-AAGTATCGACGATATTTGCC-AGTTAACTTGACAGTTGAAATCCCT-TGAAGCTTTGGTAGCTTTC-CA----------G--CTTAATCTCCTCG-------AAAGATAAT-AGCTAAAATATATA------C--AGA--------------
dp5 3:5608923-5609164 + CTTTTTGAAGAAATAATC-CTAC---AAT---CAACGACACACCATGGG-----TAAGGT--------------------------------------------------------TTGACTGGTAGATTTCCTGGGAAAA-----GT---GCTTCAAAATAAACCGACG--AATAAGTG--------CCG-AAGAACCATCGATACC---A-AGTTCAGCTGACAGTGAAAATCCCC-TGGAGCTTCGGTGGCTTTCTCATAGATCTTACG--ATTTCACACCCCG-------TGAGATAAC-AGACCAAGTTCTTGTTATTAATGTGCGAGGGGTGTGGTGT
droPer2 scaffold_2:5803482-5803716 + CTTTTTGAAGAAATAATC-CCAC---ACT---CAACGACACACCATGGGTAAGGT-------------------------------------------------------------TTGACTGGTAGATTTCCTGCGAAAA-----GT---GCTTCAAAATAAACCAACG--AATAAGTG--------CCG-AAGAACCATCGATACC---A-AGTTCAGCTGACAGTGAAAATCCCC-TGGAGCTTCGGTGGCTTTCTCATAGATCTTACG--ATTTCACACCCCG-------TGAGATAAC-AGACCAAGTTCTTGTTATTAATGTGCGAGGGG-----T--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AGACCTAAATCAACAACACACAAAACTCA-CACACACACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-TGTGACTAAGATAATTCCGTCGAAAAGGAAAGCATTGTGTCGCAATTAGT----CGTGACAAGTG--------GCC-AAGTGTCATCGATACT---C-CGCGCACCTGACAGCCGAAATCCCC-CGGAGCTTTGGTAGCTTTC-CATAGATCCGGCG--ATTTTACCCCCGG-------ACAGATAAA-AA----AACA----------C--CGTGTGTGT-----CGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................CTAAGATAATTCCGTCGAAAAGGA........................................................................................................................................................................................................2413.00301000020000
...............................................................................................................................................................ATTAGT----CGTGACAAGTG--------GCC-AAGTGTCATC..............................................................................................................................................3012.00200000020000
..........................................................................................................................................................................GTGACAAGTG--------GCC-AAGTGTC.................................................................................................................................................2012.00200000020000
.........................................................................................................................................................................................................................................................GTAGCTTTC-CATAGATCCGGCG--......................................................................2212.00202000000000
..............................CACACACACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2022.00403000010000
..................................................................................................................................TCCGTCGAAAAGGAAAGCATTGTGTCGC..........................................................................................................................................................................................2812.00201000010000
..........................................................AA--------CTG-----------------AAGTGC------AAA--------GTT-TGTGA................................................................................................................................................................................................................................2212.00200000020000
...............................................................................................................................................................ATTAGT----CGTGACAAGTG--------GCC-AAGTGT..................................................................................................................................................2612.00200000020000
...................................................................................................................................................CATTGTGTCGCAATTAGT----CGTGA..........................................................................................................................................................................2311.00100000010000
.......................................................GAGAA--------CTG-----------------AAGTGC------AAA--------GT.......................................................................................................................................................................................................................................1911.00100000010000
.................................................................................................................................................................................................................................AGCCGAAATCCCC-CGGAGCTTTG...............................................................................................2311.00101000000000
.........................CTCA-CACACACACACAACATGGG--.....................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................................................................................................................AATTCCGTCGAAAAGGAAAGCATTGTGT.............................................................................................................................................................................................2811.00100000010000
.......................................................................................................................ACTAAGATAATTCCGTCGAAAAGGA........................................................................................................................................................................................................2511.00100000010000
.........................CTCA-CACACACACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................GACTAAGATAATTCCGTCGAAAAGGA........................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................GTGTCGCAATTAGT----CGTGA..........................................................................................................................................................................1911.00100000010000
........................................................................................................................CTAAGATAATTCCGTCGAAAAGGAAAGC....................................................................................................................................................................................................2811.00100000010000
...............................................................................................................................................AAAGCATTGTGTCGCAATTAGT----CGT............................................................................................................................................................................2511.00100000010000
....................................................................................................................GTGACTAAGATAATTCCGTCGAAAAGGA........................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................GCACCTGACAGCCGAAATCCCC-CGGAGCT..................................................................................................2911.00100000010000
..........................................................................................................................................................................................................GATACT---C-CGCGCACCTGACAGCCGAA................................................................................................................2611.00101000000000
...............................................................................................................GTT-TGTGACTAAGATAATTCCGTC................................................................................................................................................................................................................2411.00100000010000
........................................................................................................................................................................................................TCGATACT---C-CGCGCACCTGAC.......................................................................................................................2111.00100000010000
....................................................GGTGAGAA--------CTG-----------------AAGTGC------AAA--------.........................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................................................................................................................................................................................AGCTTTC-CATAGATCCGGC.........................................................................1911.00101000000000
.........................CTCA-CACACACACACAACAT..........................................................................................................................................................................................................................................................................................................2011.00101000000000
..........................TCA-CACACACACACAACATGGG--.....................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................CACACACACACAACATGGG--AG...................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................AAAACTCA-CACACACACACAACATGG........................................................................................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................................................AAGCATTGTGTCGCAATTAGT----C..............................................................................................................................................................................2211.00100000010000
...........................................................A--------CTG-----------------AAGTGC------AAA--------GTT-TGTGACTAA............................................................................................................................................................................................................................2511.00100000010000
......................AAACTCA-CACACACACACAACAT..........................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................GATACT---C-CGCGCACCTGACAGCCGA.................................................................................................................2511.00101000000000
..................................................................................................................................................................AGT----CGTGACAAGTG--------GCC-AAGTGTC.................................................................................................................................................2411.00100000010000
....................................................GGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-TGTGA................................................................................................................................................................................................................................2811.00100000010000
...................................................................................................................................................CATTGTGTCGCAATTAGT----CGT............................................................................................................................................................................2111.00100000010000
...............ACACACAAAACTCA-CACACACAC.................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................TTGGTAGCTTTC-CATAGATCCGGCG--AT....................................................................2711.00100000010000
...............................ACACACACACAACATGGG--AG...................................................................................................................................................................................................................................................................................................2011.00101000000000
........................................................................................................................CTAAGATAATTCCGTCGAAAAG..........................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................GTCATCGATACT---C-CGCGCACCT..........................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................TTGGTAGCTTTC-CATAGATCCGGCG--A.....................................................................2611.00100100000000
....................................................................................................................................................................................................GTCATCGATACT---C-CGCGCACCTGACAGCC...................................................................................................................2911.00110000000000
...........AACAACACACAAAACTCA-CACACAC...................................................................................................................................................................................................................................................................................................................2511.00101000000000
AGACCTAAATCAACAACACACAAAA...............................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................CGTCGAAAAGGAAAGCATTGTGTCGCA.........................................................................................................................................................................................2711.00101000000000
............................................................................................................................GATAATTCCGTCGAAAAGGAAAGC....................................................................................................................................................................................................2411.00100000010000
......................AAACTCA-CACACACACACAAC............................................................................................................................................................................................................................................................................................................2111.00101000000000
........................................................................................................................CTAAGATAATTCCGTCGAAAAGGAAA......................................................................................................................................................................................................2611.00100000010000
................................................................................................................................................................TTAGT----CGTGACAAGTG--------GCC-AAGT....................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................ATTTTACCCCCGG-------ACAGATAAA-AA----..................................2411.00100000010000
..................................................................................................................................................GCATTGTGTCGCAATTAGT----CGTGACAAGT.....................................................................................................................................................................2911.00100000010000
........................................................................................................................CTAAGATAATTCCGTCGAAAAGGAAAG.....................................................................................................................................................................................................2711.00100000010000
..........CAACAACACACAAAACTCA-CACACACACA................................................................................................................................................................................................................................................................................................................2911.00101000000000
.......................................................................................................................ACTAAGATAATTCCGTCGAAAAGGAAA......................................................................................................................................................................................................2711.00100000010000
............................A-CACACACACACAACATGGG--AG...................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................ACACACACAACATGGG--AGG..................................................................................................................................................................................................................................................................................................1911.00100000010000
................................................................................................................................................................TTAGT----CGTGACAAGTG--------GCC-AA......................................................................................................................................................2111.00100000010000
...............................ACACACACACAACATGGG--AGGT.................................................................................................................................................................................................................................................................................................2211.00100000010000
..........CAACAACACACAAAACTCA-CAC.......................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................................................................................................................ATTGTGTCGCAATTAGT----CGTG...........................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................GTCGCAATTAGT----CGTGACAAGTG--------GC..........................................................................................................................................................2511.00100000010000
......................AAACTCA-CACACACACACAACATGG........................................................................................................................................................................................................................................................................................................2511.00100100000000
..................................CACACACAACATGGG--AGGTGA...............................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................GTGAGAA--------CTG-----------------AAGTGC------AAA--------GT.......................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................GGTAGCTTTC-CATAGATCCGGCG--AT....................................................................2511.00100000010000
............................................................................................................................................................GCAATTAGT----CGTGACAAGTG--------GCC-........................................................................................................................................................2311.00100000010000
....CTAAATCAACAACACACAAAA...............................................................................................................................................................................................................................................................................................................................2111.00101000000000
........................ACTCA-CACACACACACAACAT..........................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................GATAAA-AA----AACA----------C--CGTGTGT..........2011.00100000010000
.........................................AACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------....................................................................................................................................................................................................................................................2611.00100000010000
.......................AACTCA-CACACACACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................AAAACTCA-CACACACACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2811.00101000000000
................................................................................................................................................................................................AAGTGTCATCGATACT---C-CGCGC..............................................................................................................................2211.00100000010000
....................................................................CTG-----------------AAGTGC------AAA--------GTT-TGTGACTAA............................................................................................................................................................................................................................2411.00100000010000
..............................CACACACACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2220.50101000000000
............................A-CACACACACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2320.50101000000000
...............................ACACACACACAACATGGG--A....................................................................................................................................................................................................................................................................................................1920.50100010000000
droEre2
AGACCTAAATCAACA---CATAAAACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GCT-AGTGACTAAGATAATTTCGGCAAAAACGAAAGCAAAGTGCCGCAATTAGT----CGTGACAAGTGGCCAAGTGGCC-AAGTGTCATCGATACT---C-CGCGCAGGTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CACAGATCCAGCG--ATTTTACCCC------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................A---CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................1915.0051001300
...........................CA---CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2012.0021000100
...........................CA---CACAAACACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2412.0020000200
............................................................................................................................................................GCAATTAGT----CGTGACAAGTGGC..................................................................................................................................................................2211.0011000000
........................................CAACATGGG--AGGTGAGAA--------CT..................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................TTGGTAGCTTTC-CACAGATCCAGCG--ATT...................................................................2811.0010000100
...........................CA---CACAAACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2211.0011000000
............................A---CACAAACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2111.0011000000
..........CAACA---CATAAAACCCA---CACA....................................................................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................AGCAAAGTGCCGCAATTAGT----CGTGA..........................................................................................................................................................................2511.0010000100
.GACCTAAATCAACA---CATAAAACCCA---........................................................................................................................................................................................................................................................................................................................2511.0011000000
...........................CA---CACAAACACAACATGGG--AGAC.................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................................................................GGCAAAAACGAAAGCAAAGTGC.............................................................................................................................................................................................2211.0010001000
.......................................................................................................................................................................................................................................AATCCCT-TGGAGCTTTGGTAGCTTTC-CAC..................................................................................2911.0010000100
....................................................................................................................................................................................................GTCATCGATACT---C-CGCGCAGGT..........................................................................................................................2211.0010001000
...........................................................................................................................................AACGAAAGCAAAGTGCCGC..........................................................................................................................................................................................1911.0010000100
.....................AAAACCCA---CACAAACACAACATGG........................................................................................................................................................................................................................................................................................................2411.0011000000
..........CAACA---CATAAAACCCA---CACAAACACA..............................................................................................................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................AATTAGT----CGTGACAAGTGGC..................................................................................................................................................................2011.0010001000
............................................................................................GC------AAA--------GCT-AGTGACTAAGATAATTT....................................................................................................................................................................................................................2511.0010000010
....................................................................................................................................................AAAGTGCCGCAATTAGT----CGTGACAA.......................................................................................................................................................................2511.0010000100
......AAATCAACA---CATAAAACCCA---CAC.....................................................................................................................................................................................................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................................................................GTAGCTTTC-CACAGATCCAGCG--AT....................................................................2411.0010000100
........................................................................................................................................................................................................................................ATCCCT-TGGAGCTTTGGTAGCT.........................................................................................2211.0010100000
........................................................................................................................................................................................................................................................GGTAGCTTTC-CACAGATCCAGC.........................................................................2211.0011000000
................................CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................1811.0010001000
....................................................................................................................................................AAAGTGCCGCAATTAGT----CGTGACAAG......................................................................................................................................................................2611.0010000100
droSec2
AGACCTAAATCAACA---CACAGAACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGTTAATTCCGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-TAGTGTCATCGATACT---C-CGAGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAGATAAA-AGA---A--A----------C--C----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................CA---CACAAACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2212.0020020
..........................CCA---CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2112.0020020
................................CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................1812.0021010
........................ACCCA---CACAAACACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2511.0010010
...........AACA---CACAGAACCCA---CACAAACA................................................................................................................................................................................................................................................................................................................2311.0011000
........................................................................................................................................GAAAACGAAAGCATAGTGCCGC..........................................................................................................................................................................................2211.0010010
............................A---CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................1911.0010010
..............A---CACAGAACCCA---CACAAACACAACAT..........................................................................................................................................................................................................................................................................................................2611.0011000
..............................................................................................................................................................AATTAGT----CGTGACAAGTG--------GGC-........................................................................................................................................................2111.0010100
..........................................................AA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAA............................................................................................................................................................................................................................2611.0010100
................................................G--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------.........................................................................................................................................................................................................................................2211.0010100
...................................................................................................................................................CATAGTGCCGCAATTAGT----CGT............................................................................................................................................................................2111.0010010
...CCTAAATCAACA---CACAGAACC.............................................................................................................................................................................................................................................................................................................................2111.0010010
..ACCTAAATCAACA---CACAGAACCCA---C.......................................................................................................................................................................................................................................................................................................................2511.0011000
..........CAACA---CACAGAACCCA---CACAAACAC...............................................................................................................................................................................................................................................................................................................2511.0011000
AGACCTAAATCAACA---CACAGA................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................ATAGTGCCGCAATTAGT----CGT............................................................................................................................................................................2011.0010010
..........................CCA---CACAAACACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2511.0010100
..............................................................................................................................................................AATTAGT----CGTGACAAGTG--------GGC-TAGT....................................................................................................................................................2511.0010001
......AAATCAACA---CACAGAACCCA---CACAAACA................................................................................................................................................................................................................................................................................................................2811.0011000
.............CA---CACAGAACCCA---CACAAACACAACATG.........................................................................................................................................................................................................................................................................................................2811.0011000
droSim2
AGACCTAAATCAACA---CACAAGACCCA---CACAAACACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGTTAATTCCGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-AAGTGTCATCGATACT---C-CGAGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAGATAAA-AGA---A--A----------C--C----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................C------AAA--------GTT-AGTGACTAAGTT.........................................................................................................................................................................................................................1912.00200200000000000000
..........................CCA---CACAAACACAACATGGG--A....................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.........................................................GAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACT..............................................................................................................................................................................................................................2511.00100010000000000000
......................................................................................................................................................................................................CATCGATACT---C-CGAGCACCT..........................................................................................................................2011.00100100000000000000
AGACCTAAATCAACA---CAC...................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
............................................................................................GC------AAA--------GTT-AGTGACTAAGTT.........................................................................................................................................................................................................................2011.00100010000000000000
.....................AAGACCCA---CACAAACACAACA...........................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................................................GTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-.....................................................................................................................................................................................................................................2211.00100100000000000000
............................................................................................................................................................GCAATTAGT----CGTGACAAGTG--------GGC-........................................................................................................................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................TTGGTAGCTTTC-CATAGATCCAGCG--......................................................................2511.00100100000000000000
..........CAACA---CACAAGACCCA---CACAAAC.................................................................................................................................................................................................................................................................................................................2311.00100001000000000000
dm3
AGACCTAAATCAACA---TACAAAAAAAG-CACACAAATACAACATGGG--AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAAGATAATTCTGGCGAAAACGAAAGCATAGTGCCGCAATTAGT----CGTGACAAGTG--------GGC-AAGTGTCATCGATACT---C-CGCGCACCTGACAGCCGAAATCCCT-TGGAGCTTTGGTAGCTTTC-CATAGATCCAGCG--ATTCTACACCCTG-------ACAAATAAA-AGACAAAAAA----------C--C----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................AGATCCAGCG--ATTCTACACCCTG-------AC................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.....................................ATACAACATGGG--AGGTGA...............................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000100000000
.........................................................GAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACT..............................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGACTAAGATAATTCTGGCGAAAACGA........................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CACAAATACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATTAGT----CGTGACAAGTG--------GGC-........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................TGC------AAA--------GTT-AGTGACTAAG...........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAAAAAG-CACACAAATACAACATGGG--A....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATTAGT----CGTGACAAGTG--------GGC-AAG.....................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ATAATTCTGGCGAAAACGAAAGC....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CT-TGGAGCTTTGGTAGCTTTC-CATA.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGA................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GT----CGTGACAAGTG--------GGC-AAGTGTC.................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................ACACAAATACAACATGGG--A....................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................A--------GTT-AGTGACTAAGATAATC.....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GCAATTAGT----CGTGACAAGTG--------GG..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................AGGTGAGAA--------CTG-----------------AAGTGC------AAA--------G........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................CTG-----------------AAGTGC------AAA--------GTT-AGTGACT..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGGTGAGAA--------CTG-----------------AAGTGC------....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................AAATACAACATGGG--AGGT.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................AAG-CACACAAATACAACATGGG--.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGACCTAAATCAACA---TACAAAAAAAG-C.........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TACT---C-CGCGCACCTGACA......................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATAGTGCCGCAATTAGT----CGT............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................CTG-----------------AAGTGC------AAA--------GTT-AGTGA................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................TTTGGTAGCTTTC-CATAGATCCAGC.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AATTCTGGCGAAAACGAAAGC....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TAGT----CGTGACAAGTG--------GGC-........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................G-CACACAAATACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GACCTAAATCAACA---TACAAA................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GCAATTAGT----CGTGACAAGTG--------GGC-........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................CAACATGGG--AGGTGAGAA--------CTG-----------------AAG.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................AGTGCCGCAATTAGT----CGT............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................GGTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGT..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................AGT----CGTGACAAGTG--------GGC-........................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGACTAA............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GTAGCTTTC-CATAGATCCAGCG--......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................GACAAGTG--------GGC-AAGTGTCATCG.............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GAAATCCCT-TGGAGCTTTG...............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................G-CACACAAATACAACATGGG--.....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CAAGTG--------GGC-AAGTGTCATCGA............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................AAGTGC------AAA--------GTT-AGTGACTA.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................AATACAACATGGG--AGGTGAG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................TG-----------------AAGTGC------AAA--------GTT-AGTG.................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................AAGTG--------GGC-AAGTGTCATCG.............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................AG-CACACAAATACAACATGGG--AGA..................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACACAAATACAACATGGG--AGGC.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTGAGAA--------CTG-----------------AAGTGC------AAA--------GTT-AGTGA................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGCCGCAATTAGT----CGTGACAAGTG--------GC..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................G-CACACAAATACAACATGGG--AGGTGA...............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................ATGGG--AGGTGAGAA--------CTG-----------------A...............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................T-AGTGACTAAGATAATTCTGGCA...............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................AGGTGAGAA--------CTG-----------------AAGTG...........................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GATACT---C-CGCGCACCTGACA......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................ACACAAATACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CGCAATTAGT----CGTGACAAG......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAAATACAACATGGG--AGAC.................................................................................................................................................................................................................................................................................................1930.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.................................ACAAATACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................AAATACAACATGGG--AGACT................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEug1
AAACCTAAGTCAACA---ACTAAA-----------GAAAACACCATGGG--AGGTGAGAAAA------ATG------------------AGTGC------AAACTACTTA-GTT-AGTGACTAAGATTATTCCAGTGAAAACGAAAACTTAGTGCCATAATTAGC----AATGACAGGTGGCC-----GCC-AAGTGTCATCGATACT---C-TGCTCACCTGACACCCGAAATCCCTTTGGAGCTTTGGAAGCTTTC-CATAGATCCAACTAGATTTCACACCCGG-------CTAGATAACGAA----AATAG--A------C--AGAGTGGGG-----AG-SizeHit CountTotal NormTotal
No Reads
droBia1
AGACCTAAATCAAG----CAAGGAACACA-CACTCAAAAGCAACATGGG--AGGTGAGAA------------------------------------------AG----TA-GTT-AGTGACTAAGATCATTCCTGCGAAAA------CTGGGTGCCATAATTGGC----CG---------------------AGGTGTCATCGATACT---C-CGCTCACCTGACAGCCCAAATCCCT-GGGAGCTTTGGAAGCTTTC-CGCAGATCCGGCG--ATATCACACCCGG-------CTAGATAAC-AA----AACAG--A------C--AGAGTGGGT-----C--SizeHit CountTotal NormTotal
No Reads
droTak1
AGACCTAAATCAACA---CATAC-----G---AAAAGAAACAACATGGG--AGGTGAGAA--------ACC-----------------AAGTGA------AAAG----TA-GTT-AGTGACTAAGATTATTCCTGTGAAAA--AAAACACAGTGCCATAATTAGC----CATGACAAGTG--------GCCAAAGTGTCATCGATACT---C-CGCTCACCTGACAGCCCAAATCCCT-TGGAGCTTTGGAAGCTTTC-CATAGATCCGCCG--ATTTCACACCCGG-------CCAGATAAG-GA----AATAG--A------C--AG---------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGACCTAAATCAACA---CA----------------ACAGCAACATGGG--AGGTGAGAA--------AAG-----------------TCGTGT------AAAG----TA-GTTTGGTGACTAAGATTATTCCTGCTAAT-----GGCACAGTGCCATAATTAGT----TGTGACAAGTG--------GCC-AAGTGTCATCGATAGT---C-CGCTCACCTGACAGCCGAAATCCCC-TGGAGCTTTGGAAGCTTTC-CATAGATCCGCCG--ATTTCACACCTGG-------TCAGATAAC-GA----AATAG--A------C--AGAGTGGGT-----C--SizeHit CountTotal NormTotal
No Reads
droRho1
ACCCCTAAATCAACA---CAAACAGCCAAAAACACAACAGCAACATGGG--AGGTGAGAA--------TAG-----------------TTGTGA------TAAG----TT-ATT-TGTGACTAAAATTATTCCTGCGAAGA-----ACCCAGTGACATAATTAGC----CATGACAGGTG--------GCC-AAGTGTCATCGATGGC---T-TGCTCACCTGACAGCCGAAATCCCC-TGGAGCTTTGGAAGCTTGC-CGACGATCCAACG--ATTTCACTAGCTAAATAAATATAGATAAG-AA----AATAG--A------C--AGAGTGGTT-----CA-SizeHit CountTotal NormTotal
No Reads
droFic1
GGACCCAAATCAACA---CAAAAAACACA---CAT----CAAACATGGG--AGGTGAGAAAAAAATAAAAC-----------------AAGTGA------AAAA----TA-GTG-TGTGACTAGGAGTATTTACCTGGAATC----GCTGTGTTCCATAATTAAA-------------------------C-AAGTGCCATCGATACT---CAGGCTCACCTGACAGTTCAAATCCCC-CGGAGCTTTGGAAGCTTTC-CATAGATCCGGCG--ATATTTCACCCCA-------ACTGATAAG-AA----AATAG--A------C--AGAGTGGGG-----C--SizeHit CountTotal NormTotal
No Reads
droKik1
AGACCCAAGTCAGCA---AAC----------------ACACAACATGGG--AGGTGAGAA--------AAGTGACG--------ATCGGGGTGTGACC-----------------------CCCCACAATTCCTGCGAAAA--AAAGC--------------GAC----CATGACAACT-----------------AGTATCGATAGT---A-C---CACCTGACAGCCGTAATCCCT-TGGAGCTTTGGAAGCTTTC-CACAGATCTGGCG--ATTTCACACCGGG------AATAGATAAT-AA----AACA------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GAAACCAAATCAA-----------------------------ACATGAC--AGGTGAGAA--------GTGCGATAGAGGATAGGCCGAGGTGTGAACTGAAAG----TAAATT-AGAG---------ATTCCTG-----------------TGACATCATTAGC----TGTGACAAGTG--------TTA-AAGTACCATCGATATTTGCC-AGTCAACTTGACAGTTGAAATCCCT-TGAAGCTTTCCTAGCTTTC-CA--------GCCAAAT--CT-CCCCCG-------AAAGATAAT-GGCTAAAATAT--A------T--AGA-----------C--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................AT--CT-CCCCCG-------AAAGATAAT-GGC.....................................2212.002011000
...........AA-----------------------------ACATGAC--AGGTGAGAA--------GTGC................................................................................................................................................................................................................................................................................2211.001000010
GAAACCAAATCAA-----------------------------ACATGAC--AGA..................................................................................................................................................................................................................................................................................................2311.001010000
.........TCAA-----------------------------ACATGAC--AGGTGAGAA--------GTG.................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................GACATCATTAGC----TGTGACAAGT.....................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................GTACCATCGATATTTGCC-AGT................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................TC-CA--------GCCAAAT--CT-CCCCCG-------AAA...............................................2211.001010000
.....CAAATCAA-----------------------------ACATGAC--AGA..................................................................................................................................................................................................................................................................................................1830.331010000
droBip1
GAACCCAAATCAA------------------------ACACAACATGAC--AGGTGAGAA--------AAGCAACAGGAGA---GTCGAGGTGTGAC---AAAG----TAAATT-TGAG---------ATTCCTGTGAACA-----CCATTGTGACATCATTAGC----CGTGACAAGTG--------TTA-AAGTATCGACGATATTTGCC-AGTTAACTTGACAGTTGAAATCCCT-TGAAGCTTTGGTAGCTTTC-CA----------G--CTTAATCTCCTCG-------AAAGATAAT-AGCTAAAATATATA------C--AGA--------------SizeHit CountTotal NormTotal
No Reads
dp5
CTTTTTGAAGAAATAATC-CTAC---AAT---CAACGACACACCATGGG-----TAAGGT--------------------------------------------------------TTGACTGGTAGATTTCCTGGGAAAA-----GT---GCTTCAAAATAAACCGACG--AATAAGTG--------CCG-AAGAACCATCGATACC---A-AGTTCAGCTGACAGTGAAAATCCCC-TGGAGCTTCGGTGGCTTTCTCATAGATCTTACG--ATTTCACACCCCG-------TGAGATAAC-AGACCAAGTTCTTGTTATTAATGTGCGAGGGGTGTGGTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................C---AAT---CAACGACACACCATGG........................................................................................................................................................................................................................................................................................................2012.0020200000000
............ATAATC-CTAC---AAT---CAACGAC.................................................................................................................................................................................................................................................................................................................2012.0020100100000
..........................AAT---CAACGACACACCATGGA-----C.................................................................................................................................................................................................................................................................................................2111.0010100000000
...............ATC-CTAC---AAT---CAACGACACACCATGGA-----C.................................................................................................................................................................................................................................................................................................2811.0010100000000
............ATAATC-CTAC---AAT---CAACGACACACCATG.........................................................................................................................................................................................................................................................................................................2811.0010100000000
...................CTAC---AAT---CAACGACACACCATGGA-----..................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................CTTACG--ATTTCACACCCCG-------T.................................................2011.0010010000000
.........GAAATAATC-CTAC---AAT---CAACGACACA..............................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................GACACACCATGGG-----TAAGG.............................................................................................................................................................................................................................................................................................1811.0010000100000
.............TAATC-CTAC---AAT---CAACGA..................................................................................................................................................................................................................................................................................................................1811.0010100000000
.............................................................................................................................................................................ATAAGTG--------CCG-AAGAACCATC..............................................................................................................................................2011.0010100000000
...................CTAC---AAT---CAACGACACACCATGGA-----C.................................................................................................................................................................................................................................................................................................2511.0010100000000
......................C---AAT---CAACGACACACCATGGA-----C.................................................................................................................................................................................................................................................................................................2211.0010100000000
...........AATAATC-CTAC---AAT---CAACGACACA..............................................................................................................................................................................................................................................................................................................2411.0010100000000
...........AATAATC-CTAC---AAT---CAACGAC.................................................................................................................................................................................................................................................................................................................2111.0010010000000
..........................AAT---CAACGACACACCATGGA-----CC................................................................................................................................................................................................................................................................................................2211.0010100000000
........AGAAATAATC-CTAC---AAT---CAACGACAC...............................................................................................................................................................................................................................................................................................................2611.0010100000000
...............ATC-CTAC---AAT---CAACGACACACCATGGA-----..................................................................................................................................................................................................................................................................................................2711.0010100000000
droPer2
CTTTTTGAAGAAATAATC-CCAC---ACT---CAACGACACACCATGGGTAAGGT-------------------------------------------------------------TTGACTGGTAGATTTCCTGCGAAAA-----GT---GCTTCAAAATAAACCAACG--AATAAGTG--------CCG-AAGAACCATCGATACC---A-AGTTCAGCTGACAGTGAAAATCCCC-TGGAGCTTCGGTGGCTTTCTCATAGATCTTACG--ATTTCACACCCCG-------TGAGATAAC-AGACCAAGTTCTTGTTATTAATGTGCGAGGGG-----T--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................C---ACT---CAACGACACACCATGGAC......................................................................................................................................................................................................................................................................................................2212.002110000
................................CAACGACACACCATGGAC......................................................................................................................................................................................................................................................................................................1851.407700000
........AGAAATAATC-CCAC---ACT---CAAC....................................................................................................................................................................................................................................................................................................................2111.001010000
............................T---CAACGACACACCATGGAC......................................................................................................................................................................................................................................................................................................1911.001100000
.................C-CCAC---ACT---CAACGACACACCATGGAC......................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................GAAAATCCCC-TGGAGCTTCGGTGGCTTT.......................................................................................2811.001000001
............ATAATC-CCAC---ACT---CAACGACA................................................................................................................................................................................................................................................................................................................2111.001010000
.........GAAATAATC-CCAC---ACT---CAAC....................................................................................................................................................................................................................................................................................................................2011.001010000
............ATAATC-CCAC---ACT---CAACGACACACCAT..........................................................................................................................................................................................................................................................................................................2711.001010000
............ATAATC-CCAC---ACT---CAACGACACAC.............................................................................................................................................................................................................................................................................................................2411.001010000
......GAAGAAATAATC-CCAC---ACT---CAACGAC.................................................................................................................................................................................................................................................................................................................2611.001010000
..........................ACT---CAACGACACACCATGGAC......................................................................................................................................................................................................................................................................................................2111.001100000
......................C---ACT---CAACGACACACCAT..........................................................................................................................................................................................................................................................................................................1811.001100000
.........GAAATAATC-CCAC---ACT---CAACGACG................................................................................................................................................................................................................................................................................................................2411.001010000
......................C---ACT---CAACGACACACCATG.........................................................................................................................................................................................................................................................................................................1911.001001000
................................CAACGACACACCATGGACC.....................................................................................................................................................................................................................................................................................................19200.153300000

Generated: 05/17/2015 at 10:39 PM