ID:

dya_48

 Coordinate:

X:16642342-16642404 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

utr5 [utr5_plus_15549]

No Repeatable elements found

Sense Strand Reads

AATCGTCATCAGTGGTGTTCGGGGTATCCCCAAACCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATGGTCTACCGCAATTCGAAAGACAGTTGTAACTTAATTAAAAA

***********************************..((((((((((..(((((((.((....((((((((..................))))))))....)).)))))))..))))))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M026

head

 V058

head

 M056

embryo

 V052

head

 M043

female body

 V120

male body		 V046

embryo

 SRR1275484

Male prepupae
...........................................................................................AACTTGACACGTTGAGCTCGT................................................... 21 0 1 393.00 393 143 76 100 39 17 12 6 0
..................................................GAGTTCCACTAAGCAAGTTTT............................................................................................ 21 0 1 61.00 61 1 42 1 15 2 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGC................................................... 21 1 1 27.00 27 4 1 22 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGG................................................... 21 1 1 21.00 21 21 0 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCG.................................................... 20 0 1 19.00 19 9 0 8 1 1 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGTT.................................................. 22 0 1 9.00 9 2 1 3 0 1 1 1 0
..................................................GAGTTCCACTAAGCAAGTTT............................................................................................. 20 0 1 9.00 9 0 8 0 1 0 0 0 0
..........................................................................................AAACTTGACACGTTGAGCTCGT................................................... 22 0 1 7.00 7 3 1 2 1 0 0 0 0
...........................................................................................AACTTGACACGTTGCGCTCGT................................................... 21 1 1 5.00 5 0 5 0 0 0 0 0 0
...........................................................................................AGCTTGACACGTTGAGCTCGT................................................... 21 1 1 5.00 5 0 0 4 0 1 0 0 0
................................................................................................................TTGTGGGATGGTCTACCGC................................ 19 0 1 5.00 5 0 3 0 2 0 0 0 0
..........................................................................................AAACTTGACACGTTGAGCTCG.................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
.........................................................................................AAAACTTGACACGTTGAGCTCG.................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0
.....................................................................TTGAGATCGTTTTAAAAACAAAAACT.................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGACCTCGT................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................ACTTGACACGTTGAGCTCGT................................................... 20 0 1 3.00 3 0 0 0 0 3 0 0 0
..........................................................................................AAACTTGACACGTTGAGCTCGC................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGTCT................................................. 23 1 1 2.00 2 1 0 1 0 0 0 0 0
...........................................................................................AACTTGACGCGTTGAGCTCGT................................................... 21 1 1 2.00 2 0 0 0 0 2 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCTT................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0 0
.....................................................................TTGAGATCGTTTTAAAAACAAA........................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGGGCTCGT................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGTGCTCGT................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0
...........................................................................................AACGTGACACGTTGAGCTCGT................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0 0
.........................................................................................AAAACTTGACACGTTGAGCTC..................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................AAATTGACACGTTGAGCTCGT................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0
..................................................GAGTTCCACTACGCAAGTTTT............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACGTGACACGTTGATCTCGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAACTTGACACGTTGAGCTCGT................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAG........................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 1
...........................................................................................AACCTGACACGTTGAGTTCTT................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................TTGAGATCGTTTTAAAAACAAAAAC..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................CGAGTTCCACCATGCAAGTTT............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................TTGAGATCGTTTTAAAAACAA......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTTAGCTCGT................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................CGAGTTCCACTAAGCAAGTTTT............................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GAGGGCCACTACGCAAGTTT............................................................................................. 20 3 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................TTGTGGGATGGTCTACCGCA............................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCGCGTT.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AAGTTGACACGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGCTGAGCTCG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GAGTTCCACTAAGCAAGTTTTA........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GAGTTCCACTAAGCAAGTTTTT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGATCTCGT................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................AGACTTGACACGTTGAGCTCG.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGTTGCGCGCGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTTGG................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GAGTTCCACCATGCAAGTTTT............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCCCGT................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................AGCTTGACACGTTGAGCTCGC................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGCTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
....................................................GTTCCACTAAGCAAGTTTT............................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................CTTGACACGTTGAGCTCGTCT................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GAGGTCCATTAAGCAAGTTTT............................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0
..................................................GAGTTCCAGTAAGCAAGTTTT............................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0
...........................................................................................AACTTAACACGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................AAATTGACACGTTGAGCTCGC................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACTTTGAGCTCGC................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAACTCGT................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGCTGCGCTCGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACGTGACACGGTCAGCTCGT................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTC..................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................TTGAGATCGTTTTAAAAACA.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGTTA................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................ATCTTGACACGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGTTAAGCTCGTT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................AAACTTGACACGTTGAGCTCGTAAA................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................TACTTGACACGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACTTGACACGTTGAGCTCGTTT................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................GAGCTCCACTAAGCAAGTTTT............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACCCGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0
...........................................................................................AACTTGACACGTTGAGCTTGT................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0
..................................................GAGATCCACTAAGCAAGTTTT............................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................AAATTGACACGTTGAGCCCGT................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................GACGTGACACGTTGAGCTCGT................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AACATGACACGTTGAGCTCGT................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................GAGATCGTTTTAAAAACAAA........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GAGTTCCACTAAGCAAGTTTG............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................AACTTGACACGTTAAGCTCGT................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................GAGCTCCAATAAGCAAGTTTT............................................................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0 0
..................................................GAGGTCCACTACGCAAGCTTT............................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0
..................................................GGGTTCCACTACGCACGTTTT............................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0
..................................................GATTTCCACTAAGCATGATTT............................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0 0 0
......................................................................TGAGATCGTTTTCAAAGC........................................................................... 18 2 17 0.06 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTAGCAGTAGTCACCACAAGCCCCATAGGGGTTTGGAGACAGGATGCAGGCTCAAGGTGATTCGTTCAAAACTCTAGCAAAATTTTTGTTTTTGAACTGTGCAACTCGAGCAAACACCCTACCAGATGGCGTTAAGCTTTCTGTCAACATTGAATTAATTTTT

************************************..((((((((((..(((((((.((....((((((((..................))))))))....)).)))))))..))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M026

head

 M056

embryo
.........................................................................................................................CCAGCAGGCGCTAAGCTTTC...................... 20 3 4 0.25 1 1 0
....................CCCCCTAGGGGCATGGAGA............................................................................................................................ 19 3 10 0.20 2 0 2

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 X:16642292-16642454 + dya_48 confident AATC-----------------------------------------------------GTCATCA---------------GTG----------GT----------G-----TTC-GGGGTATCC-------CC----------AAA--------------------------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATGGT---CTACCGCAATTCGAAAGACAGTTGTAACTTAATT------------AAA---------AA
droEre2 scaffold_4690:8345992-8346149 + der_63 confident CAAC-----------------------------------------------------GTCATGA---------------GTT----------GC----------G-----TTT-GGGAAGTTC-------CC----------AAA--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---TTACTGC----CGAAAGCCAGTTGCAACTAAATT------------AA----------AA
droSec2 scaffold_8:326557-326701 + dse_88 confident CGTC-----------------------------------------------------GTCATCA---------------GTG----------GC----------G-----TTC-GAGGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTG---------------TTGCTACTAAATA------------T------------A
droSim2 x:17118129-17118288 + dsi-mir-969 Known_mirbase CGTC-----------------------------------------------------GTCATCA---------------GTG----------GC----------G-----TTC-GGGGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTGCAATTCAAAATCCAGTTGCTACTAAATT------------T------------A
dm3 chrX:18018358-18018517 + dme-mir-969 Known_mirbase CGTC-----------------------------------------------------GTCATTA---------------GTG----------GC----------A-----TTC-GGTGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTGCAATTCGAAATCCAGTTGCTACTTAATT------------T------------A
droEug1 scf7180000408176:664485-664652 - CAGC-----------------------------------------------------TT----------------------------------------------------TCTGGGGAATCC-------CCCT-G------AAA-------------------------TC-----TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTTCATCAGCTTGAAAGCCTGCTTAAAATAAACT------------AAGAATGATTATAA
droBia1 scf7180000301760:584959-585105 - CAAT-----------------------------------------------------GTCAT-----------------------------------------------------GGGAATCT-CTGCTCC----G------CAA--------------------------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTTGGC---C----CCACTTCAA-AACCAATTTCAACTAA-----------------A---------AA
droTak1 scf7180000415843:458208-458351 - ACTC-----------------------------------------------------ATCAAC----------------------------------------------------------CTACAGCATC----G------AAT--------------------------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAATGGCGCCCAACTTCAA------AG------------AAA---------------AGACTGATAATAA
droEle1 scf7180000491193:225591-225749 + CATC-----------------------------------------------------GATGTC------------------------------------------------AC-GGGTAATCT-------CCCA-A------AAA--------------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CAACTTCAGTTTAACAGAGTCCTACAAATAAACC------------AAG---------AA
droRho1 scf7180000779986:498565-498729 - AAGT-----------------------------------------------------ATGTTCT---------------TTG----------AC----------GTC----GC-TGGGAATCC-------CC---G------AAA--------------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGACGGG---CTACTTCAATTCAAAAGAATATTCGAAATAAACC------------AAG---------AA
droFic1 scf7180000453872:337493-337670 - AGCAG-T------------TGGCTCAGC-----------------------------------G---------------ATG----------GC-----------------AC-GGGGAGTCC-------CC----------GAA------------------------TTCCCGGTTCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CAACTCCAGCTT----------TCGCAAGAAATCAACAACAGTTTTAAA---------AA
droKik1 scf7180000302696:1720069-1720194 + CTTTA-T-ATTTAAGATGTAAGTACAAT-----AAGT--------------------------------------------------------------------------------GAA-AG-------TG----------AAG--------------------------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAATA--TTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGT------------------------------------------------------------------
droAna3 scaffold_13335:1607958-1608135 - dan_60 confident AATTA-T------------AAA-----------CAGAGTAAGTT----------TGTGTTTTAGAAAATGTGT--------------------------------------------TTATTT-TTTT----TGGAA-----AAT--------------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAGA---TAATGTCAGC--AGTATATATTTTTTACTTCAT---------------------------
droBip1 scf7180000395454:59868-60030 + AATAA-T------------AAA-----------CAGAGTAAGTGTTTTAAAGTTAGTGTTTT-GAAAAAGTGT-------------------GT----------G------TC-TTGTAATTT-TTTT----TGGAA-----AAT--------------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAG----------------------------------------------------------------
dp5 XL_group3a:1977519-1977675 - dps-mir-969 Known_mirbase AAGT-----------------------------------------------------GACATAGAAACTGAAATAGAAAGGGAAATTGAAATGCAAACTGAAATATAA--TTC-CTGGAAGCC-------ATCT--------AGG--------------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGTA--TA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------------------
droPer2 scaffold_11:2701292-2701371 + dpe_84 confident ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------------------
droWil2 scf2_1100000004909:12029373-12029483 + dwi_49 confident AGAA-----------------------------------------------------ATTGAAA---------------GTT----------AC----------G-----TTT------------------------------AT--------------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATA--TTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGACAG----------------------------------------------------------------
droVir3 scaffold_12928:1264100-1264230 - dvi-mir-969 Known_mirbase AATTG-AAAT-----------------------------------------------TTCAT-----------------GTG----------GT----------GTCGCTTTC-AAGAGCAGC-------TC----------GCG--------------------------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGA--TTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCGG----------------------------------------------------------------
droMoj3 scaffold_6473:13724248-13724395 + dmo_81 confident TATTTAT------------TAA----GAGATGGC-----------------------------------------------------------------------------T--GGGTAAGTT-------GCTC--------AAGAGCCCAATCCTTATCCATACCATATCCACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--TG--TTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTG----------------------------------------------------------------------
droGri2 scaffold_15203:8445715-8445869 + dgr_54 confident TATCTTT------------C------GAAATGAT----TCGGTT--------------TGTTCT---------------TTT----------AC-------------------------------AGCAGT----G-CATCCGGG--------------------------------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGTA--TT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCG---G------------AAATCAAC---TTACTCA---------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AATC-----------------------------------------------------GTCATCA---------------GTG----------GT----------G-----TTC-GGGGTATCC-------CC----------AAA--------------------------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATGGT---CTACCGCAATTCGAAAGACAGTTGTAACTTAATT------------AAA---------AASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211393.003931431710063976120000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................21161.00611210154200000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................21127.0027402200100000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................21121.0021210000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20119.001991801000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2219.00921310110000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................2019.00900001800000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2217.00730201100000
.................................................................................................................................................................................................................................................................TTGTGGGATGGT---CTACCGC.....................................................1915.00500002300000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2114.00440000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2214.00440000000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT............................................................................................2613.00330000000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2013.00303000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC...........................................................................2212.00200200000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAA................................................................................................2212.00220000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC.............................................................................2112.00220000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAG................................................................................1611.00100000000010
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAAAAC.............................................................................................2511.00110000000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAA.................................................................................................2111.00110000000000
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT......................................................................................................................2211.00100000100000
.................................................................................................................................................................................................................................................................TTGTGGGATGGT---CTACCGCA....................................................2011.00100000100000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTA.....................................................................................................................2211.00100000100000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT.....................................................................................................................2211.00100000100000
...................................................................................................................................................................................................GTTCCACTAAGCAAGTTTT......................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1911.00100000100000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACA..................................................................................................2011.00110000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.........................................................................2311.00110000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTAAA........................................................................2511.00110000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.........................................................................2311.00100001000000
......................................................................................................................................................................................................................GAGATCG--TTTTAAAAACAAA................................................................................................2011.00110000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTG......................................................................................................................2111.00100000100000
droEre2
CAAC-----------------------------------------------------GTCATGA---------------GTT----------GC----------G-----TTT-GGGAAGTTC-------CC----------AAA--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---TTACTGC----CGAAAGCCAGTTGCAACTAAATT------------AA----------AASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211299.002992710265821490
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................211217.00217609051970
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTGC----.................................................19147.004700310430
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................20144.004400301400
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20111.00111000460
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT......................................................................................................................2018.0080020060
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTGC----C................................................2018.0080021050
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2217.0071020220
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTGC----CG...............................................2114.0040000130
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................2113.0030300000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTGC----CT...............................................2113.0030000030
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2213.0030000120
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT............................................................................................2613.0030000030
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA..........................................................................2212.0020010010
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTG......................................................1812.0020000020
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTA.....................................................................................................................2212.0020010010
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2111.0011000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2211.0010000010
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTGC----CA...............................................2111.0010000010
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...........................................................................2311.0010000010
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC..........................................................................2211.0010000100
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA...........................................................................2111.0010100000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG.....................................................................................................................2211.0010010000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2011.0011000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAA................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTA......................................................1811.0010000010
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT........................................................................................................................1911.0010000010
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT.....................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACTT......................................................1811.0010000010
......................................................................................................................................................................................................................GAGATCG--TTTTAAAAACAAA................................................................................................2011.0010000010
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---TTACAAA----.................................................19190.0510000010
droSec2
CGTC-----------------------------------------------------GTCATCA---------------GTG----------GC----------G-----TTC-GAGGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTG---------------TTGCTACTAAATA------------T------------ASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211114.0011411233545
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................21185.008502083
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................20133.003301032
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT......................................................................................................................2012.0020002
......................................................................................................................................................................................................................GAGATCG--TTTTAAAAACAAA................................................................................................2012.0020020
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2212.0020020
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2212.0020011
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTG---------------T......................................1912.0020002
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA..........................................................................2211.0010001
...............................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGTGT.....................................................................2411.0010001
...............................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT.......................................................................2211.0010001
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTT........................................................................................................................2011.0010001
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTT.......................................................................................................................1911.0010001
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTG---------------TT.....................................2011.0010001
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................2011.0010010
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.........................................................................................................................1811.0010001
.......................................................................................................................................................................................................................................................TTGAGCTCGTTCGTGGGATGG................................................................2111.0010001
droSim2
CGTC-----------------------------------------------------GTCATCA---------------GTG----------GC----------G-----TTC-GGGGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTGCAATTCAAAATCCAGTTGCTACTAAATT------------T------------ASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211913.0091359811250505134824319000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................211104.001045424800000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20158.00583931300200000001000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................21151.0051200114600000100000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................21136.0036261900000000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................20133.0033100003200000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.........................................................................................................................18130.0030000012900000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2115.00530100100000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGC.....................................................1914.00410000300000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT........................................................................................................................1914.00400000400000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1913.00320000100000000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAAAAACT............................................................................................2613.00330000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC.............................................................................2112.00220000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2212.00210000000000100000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2212.00220000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAA.........................................................................2311.00100000000010000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCAA...................................................2111.00100000100000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2211.00110000000000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTC.....................................................................................................................2211.00100010000000000000
...................................................................................................................................................................................................................TTTGAGATCG--TTTTAAAA.....................................................................................................1811.00110000000000000000
....................................................................................................................................................................................................................TTGAGATCG--TTTTAAAAACAA.................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCA....................................................2011.00100000100000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.........................................................................2311.00110000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC.............................................................................2011.00110000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA........................................................................2420.50110000000000000000
dm3
CGTC-----------------------------------------------------GTCATTA---------------GTG----------GC----------A-----TTC-GGTGAATCC-------CC----------AAG--------------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTACTGCAATTCGAAATCCAGTTGCTACTTAATT------------T------------ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................2111843.001843000010000000000100040000000003276105100000000000000000000000110000000000000000000000220000000000440083514100121710010000000000161002048200412283500000000000000000000000000000000000011511108300321182835790112000000107000000000000000000000000000000000030000000000000003283000970400000800000000000100000000001000002350244300610000004012000000000000000001320100000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................2111512.0015120000000000000000000000100000861091101000001101100210000000000000000000000000000000000000000000040000002000000000000011230504340600500000000000009002300420000000000000002831033009116161115529520000046101000000200000000000000010112991726623044710000000211800201102602000034305011000026000130111302000114528123934130844363010719015580016212211056040917858512760011500
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................201219.0021900000000000000000000000000001000000000000000000000000000100000000000000000000000100000000001000010000500000000000000100203000703300000000000000000000000000000000000014130600490111110620000017000000000000000000000000000000000000000000000000001700000110000000100000000000000000000000000005492200000000001001000000000000000003400000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20154.0054000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000004000000000000000010101000110013000001000000000000000000000000000101000000001000000001000000000001000000000000000000000000000010000002002150000300101300000000000000000920200000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGC.....................................................19149.00490000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000100000000026000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000200001101000004000000000000000000000000000002200000000000001200000000000000000010100000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................22149.0049000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000100001000000000000000000002000000000000000010100000010000000007000000000000000000000000000001000100000000000000000000000000000010000000000000000010000000000040000542000000000100000100000020000520100000100
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTATC........................................................................24138.003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT......................................................................................................................20137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000001000000000000000000000000000000000000000440000120403020000003000000000000000000000000000010000000000000000000001100000100000000000000000000000000000000000001120020000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCAA...................................................21131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000019000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000001000003000000000000000000000000000020000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCA....................................................20125.0025000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000020000000004000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000031130000000000200000000000000000000000010000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000030001010100000000000000000000000000000010000100
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT........................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000100000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000300000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA..........................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000001000001100000000000000000000000001000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.........................................................................................................................1818.008000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTT.......................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000011000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT......................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT.....................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTC......................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GAGATCG--TTTTAAAAACAAA................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCT....................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000
..............................................................................................................................................AAG--------------------------------TCTCTGTCCTACGTCC...........................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT.......................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG.....................................................................................................................2212.002000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCGTGGGATGGA---CTACTGCAAA..................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GTTCCACTAAGCAAGTTTT......................................................................................................................1912.002000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.........................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.........................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA...........................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTG......................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAT.........................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.........................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTATC...................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ACACGTTGAGCTCGTTCC........................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CGTGGGATGGA---CTACTGCATC..................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CAGC-----------------------------------------------------TT----------------------------------------------------TCTGGGGAATCC-------CCCT-G------AAA-------------------------TC-----TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CTTCATCAGCTTGAAAGCCTGCTTAAAATAAACT------------AAGAATGATTATAASizeHit CountTotal NormTotal
No Reads
droBia1
CAAT-----------------------------------------------------GTCAT-----------------------------------------------------GGGAATCT-CTGCTCC----G------CAA--------------------------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCTTGGC---C----CCACTTCAA-AACCAATTTCAACTAA-----------------A---------AASizeHit CountTotal NormTotal
No Reads
droTak1
ACTC-----------------------------------------------------ATCAAC----------------------------------------------------------CTACAGCATC----G------AAT--------------------------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAATGGCGCCCAACTTCAA------AG------------AAA---------------AGACTGATAATAASizeHit CountTotal NormTotal
No Reads
droEle1
CATC-----------------------------------------------------GATGTC------------------------------------------------AC-GGGTAATCT-------CCCA-A------AAA--------------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CAACTTCAGTTTAACAGAGTCCTACAAATAAACC------------AAG---------AASizeHit CountTotal NormTotal
No Reads
droRho1
AAGT-----------------------------------------------------ATGTTCT---------------TTG----------AC----------GTC----GC-TGGGAATCC-------CC---G------AAA--------------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCG--TTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGACGGG---CTACTTCAATTCAAAAGAATATTCGAAATAAACC------------AAG---------AASizeHit CountTotal NormTotal
No Reads
droFic1
AGCAG-T------------TGGCTCAGC-----------------------------------G---------------ATG----------GC-----------------AC-GGGGAGTCC-------CC----------GAA------------------------TTCCCGGTTCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGA---CAACTCCAGCTT----------TCGCAAGAAATCAACAACAGTTTTAAA---------AASizeHit CountTotal NormTotal
No Reads
droKik1
CTTTA-T-ATTTAAGATGTAAGTACAAT-----AAGT--------------------------------------------------------------------------------GAA-AG-------TG----------AAG--------------------------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAATA--TTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGT------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AATTA-T------------AAA-----------CAGAGTAAGTT----------TGTGTTTTAGAAAATGTGT--------------------------------------------TTATTT-TTTT----TGGAA-----AAT--------------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAGA---TAATGTCAGC--AGTATATATTTTTTACTTCAT---------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211153.001531493802423
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................21165.006540015046
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC..........................................................................22122.0022210847
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT......................................................................................................................22113.0013100705
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................20111.0011000407
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.........................................................................2318.008100601
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2216.006011121
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................2015.005100220
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT......................................................................................................................2013.003000300
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2013.003300000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2212.002100010
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................2112.002010100
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..........................................................................2311.001000100
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAG................................................................................1711.001000100
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.........................................................................2111.001000010
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2211.001000100
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1911.001000100
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTT.......................................................................................................................2111.001100000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.........................................................................2311.001000100
.................................................................................................................................................................................................................................................................CCGTGGGGCAGA---TAATGT......................................................1811.001100000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG.....................................................................................................................2211.001000001
................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTG......................................................................................................................2211.001000100
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.........................................................................2311.001000100
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA...........................................................................2111.001000001
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2111.001000100
droBip1
AATAA-T------------AAA-----------CAGAGTAAGTGTTTTAAAGTTAGTGTTTT-GAAAAAGTGT-------------------GT----------G------TC-TTGTAATTT-TTTT----TGGAA-----AAT--------------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATT--TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCAG----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAGT-----------------------------------------------------GACATAGAAACTGAAATAGAAAGGGAAATTGAAATGCAAACTGAAATATAA--TTC-CTGGAAGCC-------ATCT--------AGG--------------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGTA--TA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211110.0011011610172556012
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTT......................................................................................................................21173.00730170350201000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC.............................................................................20128.0028220140100000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................21116.00160306070000
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTT.......................................................................................................................20111.00110703010000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2218.0080301130000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................2017.0070101140000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2215.0050302000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2214.0040100030000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................2114.0040004000000
................................................................................................................................................................................................CGAGTTCCACCATGCAAGTTTT......................................................................................................................2214.0040103000000
..............................................................................................................................................AGG--------------------------------AGCCTGTTCTACGTGC...........................................................................................................................................1913.0030100000002
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...........................................................................2313.0030101010000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT..............................................................................1912.0020001010000
..................................................................................................................................................................................................AGTTCCACCATGCAAGTTTTG.....................................................................................................................2112.0020200000000
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTC.......................................................................................................................2012.0020002000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTG..........................................................................2212.0020000110000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA...........................................................................2111.0010010000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1911.0010000010000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC...........................................................................2211.0010010000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCG............................................................................1911.0010100000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTGT.........................................................................2211.0010000001000
...................................................................................................................................................................................................GTTCCACCATGCAAGTTTT......................................................................................................................1911.0010001000000
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTTG.....................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA..........................................................................2211.0010000010000
...................................................................................................................................................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC............................................................................2911.0010010000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTT.............................................................................2011.0010100000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTC.............................................................................1811.0010001000000
droPer2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG---------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211162.00162292352733
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTT......................................................................................................................21156.005603019322
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................21117.0017010880
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................22115.0015200850
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20112.0012000291
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC.............................................................................2019.009000360
.................................................................................................................................................................................................GAGTTCCACCATGCAAGTTT.......................................................................................................................2017.007000232
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2217.007000250
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...........................................................................2317.007000331
................................................................................................................................................................................................CGAGTTCCACCATGCAAGTTTT......................................................................................................................2217.007000340
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTG..........................................................................2213.003000120
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2212.002000020
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1912.002000020
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................2112.002200000
.................................................................................................................................................................................................GAGTTCCACCATGCAAGT.........................................................................................................................1812.002000020
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC.............................................................................2111.001000010
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT..............................................................................1911.001000100
..................................................................................................................................................................................................AGTTCCACCATGCAAGTTTTG.....................................................................................................................2111.001010000
droWil2
AGAA-----------------------------------------------------ATTGAAA---------------GTT----------AC----------G-----TTT------------------------------AT--------------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATA--TTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGACAG----------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................2111452.00145210481217149226
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTT......................................................................................................................221118.001184303108
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................21185.0085850000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT......................................................................................................................21163.00631101249
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................22157.0057480306
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20149.0049461002
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.........................................................................21131.0031310000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................21126.0026251000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................21123.0023220010
...............................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTTT.......................................................................................................................22122.0022010021
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................22122.0022412105
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTT.......................................................................................................................21122.0022000121
...............................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTT........................................................................................................................21114.0014000014
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.........................................................................2319.00990000
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.......................................................................................................................2017.00700016
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC.............................................................................2014.00440000
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCC.........................................................................2114.00440000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2214.00440000
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTT........................................................................................................................2014.00400004
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGG...........................................................................2213.00330000
..................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT......................................................................................................................2013.00300012
...............................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTTTT......................................................................................................................2313.00300003
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC...........................................................................2213.00330000
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTT.....................................................................................................................2313.00300003
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1912.00220000
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTG.....................................................................................................................2312.00200002
................................................................................................................................................................................................TGAGTTCCACTAAGCAAG..........................................................................................................................1811.00100001
................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTA.....................................................................................................................2311.00100001
.................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT.....................................................................................................................2211.00100001
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTCT.........................................................................2211.00110000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTCC.........................................................................2211.00110000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2011.00101000
......................................................................................................................................................................................................................GGGCATA--TTTCAAAAACAAA................................................................................................2011.00100010
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCG.........................................................................2111.00110000
..................................................................................................................................................................................TCCTGTCCTACGCATGAGTTCC....................................................................................................................................2211.00100001
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCG.........................................................................2311.00110000
droVir3
AATTG-AAAT-----------------------------------------------TTCAT-----------------GTG----------GT----------GTCGCTTTC-AAGAGCAGC-------TC----------GCG--------------------------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGA--TTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCGG----------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211262.002626787110200200004361101041146000118113000000030000000000000000022031700000033013000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTG.....................................................................................................................211217.002170232000000000002110817191001916000000000000000000000000000000000010159200000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGA....................................................................................................................221210.00210000000000000005027102418110917000000010000000000000000000000000000042100000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................221110.0011001951000000000023100126708700000001000000001000000000000000000008200000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................21197.009701901040000000025626102012600000000000000001000000000000000000003000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................22139.003904000000000000162013005400000000000000000000000000000000001002000000001000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................22137.00370421001000000080030022100000212000000000000000000000000000014300000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................20130.00302200030001000031010011000000321201000000000000000000000000204000000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTT......................................................................................................................20116.00160040000000000021011100000000000000000000000000000000000000006000000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC.............................................................................21114.00141210000000000004000003000000000000000000000000000000000000002000000001000000000
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTT......................................................................................................................21114.00140020000000000021120102000000000000000000000000000000000000003000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................21110.001001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGAG...................................................................................................................2319.0090000000000000040020000300000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................2117.0070402000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................GAAAACTTGACACGTTGAGCTCG............................................................................2317.0070000000000000010103001000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.........................................................................2316.0060001000000000010000000000000111000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTT.......................................................................................................................1915.0050030000000000000000000000000000000000000000000000000000000002000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA..........................................................................2215.0050000000000000010001010000000110000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTTT.......................................................................................................................2014.0040000000000000000100200000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC..........................................................................2214.0041010010000000000000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...........................................................................2314.0040000000000000010000101100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC.............................................................................2014.0040100000000000020001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GTTCCACTAATCAAGTTTTG.....................................................................................................................2014.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTT.....................................................................................................................2113.0030000000000000010010000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCC.........................................................................2313.0030000010000000000000000000000000001000001000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGT....................................................................................................................2213.0030000000000000000010000000000000000000000000000000000000000002000000000000000000
.........................................................................................................................................................................................................................................GAAAACTTGACACGTTGAGCT..............................................................................2112.0020000000000000000020000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..........................................................................2312.0020000000000000000000001000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT..............................................................................2712.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2012.0020010000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCT............................................................................2212.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCA............................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.........................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CGAGTTCCACTAATCAAGTTT.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGA...........................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GAGCGGA--TTCGAAAGTCG..................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GTTCCACTAATCAAGTTTTGA....................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGC...............................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGCT..........................................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTTTT........................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GA--TTCGAAAGTCGAAAACTTGA.........................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTT........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGG...........................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCT............................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCT..............................................................................1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CGAAAACTTGACACGTTGAGC...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCG............................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT..............................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTTG.....................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTT.............................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCC..............................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.........................................................................2311.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC.............................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTC..........................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.........................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000001000000000000
droMoj3
TATTTAT------------TAA----GAGATGGC-----------------------------------------------------------------------------T--GGGTAAGTT-------GCTC--------AAGAGCCCAATCCTTATCCATACCATATCCACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--TG--TTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTG----------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................211260.0026078436505240
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................22135.003511021516
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................20111.00111100000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................2018.008502001
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCG............................................................................2318.008200501
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2218.008002312
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC...........................................................................2117.007000070
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2115.005201020
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTG.....................................................................................................................2115.005201200
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTT......................................................................................................................2014.004300100
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT...........................................................................2414.004100102
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTT......................................................................................................................2113.003012000
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGA....................................................................................................................2213.003000201
..................................................................................................................................................................................................AGTTCCACTAATCAAGTTT.......................................................................................................................1912.002001100
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCT..............................................................................2112.002001100
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..........................................................................2312.002100001
.................................................................................................................................................................................................GAGTTCCACTAATCAAGTTT.......................................................................................................................2011.001000100
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGC...........................................................................2411.001000010
...............................................................................................................................................................................................GCGAGTTCCACTAATCAAG..........................................................................................................................1911.001000001
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG...........................................................................2111.001000010
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAG................................................................................1911.001001000
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGTT..........................................................................2411.001000100
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTC.............................................................................2211.001000100
................................................................................................................................................................................................................................................TGACACGTTGAGCTCGTA..........................................................................1811.001100000
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCC..............................................................................1811.001000010
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2211.001100000
droGri2
TATCTTT------------C------GAAATGAT----TCGGTT--------------TGTTCT---------------TTT----------AC-------------------------------AGCAGT----G-CATCCGGG--------------------------------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGTA--TT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCG---G------------AAATCAAC---TTACTCA---------------------------AASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCG............................................................................23143.00431330
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT...........................................................................21112.001266
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT..........................................................................2215.00514
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT...........................................................................2215.00523
..................................................................................................................................................................................................AGTTCCACTATTCAAGTTTTGA....................................................................................................................2213.00330
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCT..............................................................................2112.00202
..................................................................................................................................................................................................AGTTCCACTATTCAAGTTTTG.....................................................................................................................2112.00220
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT...........................................................................2412.00211
..........................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG............................................................................2212.00220
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG............................................................................2012.00220
............................................................................................................................................................................................................................................AACTTGACACGTTGAGCT..............................................................................1811.00110
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGC...............................................................................2011.00110
.................................................................................................................................................................................................GAGTTCCACTATTCAAGTTTT......................................................................................................................2111.00110
.............................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT...........................................................................2011.00110
.........................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTC.............................................................................2211.00110
...........................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG............................................................................2111.00110

Generated: 10/20/2015 at 07:45 PM