ID:

dya_463

 Coordinate:

2R:5891262-5891412 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.0 -28.4 -28.3

Flybase annnotation

exon [dyak_GLEANR_12890:2]; CDS [Dyak\GE12655-cds]; intron [Dyak\GE12655-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-
mature
  1. dya_463  2R:5891345-5891371 -
  2. X:21639404-21639430 +
  3. 3R:2960425-2960451 +
  4. 3R:4546348-4546374 -
  5. 3R:4574672-4574698 +
  6. 3R:4576705-4576731 +
  7. v2_chrUn_1139:19142-19168 +
  8. v2_chrUn_3505:389-415 -
  9. v2_chrUn_5710:6126-6152 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCAATTAGGCCATGTCCGTTGGCCCGTTTGTCCGTCTGTCTGTCTGTTCGTATGAACGTCGAGATCTCAGGATCTATAAAACTAGAAAGTCACACACATACCTTTATTATTAAATCTGTAAAAGTACTTCTTTTTATATATCCCTGTTTTGTAGTACAAAGTGTGGCGACGCCTGGAGAATGACCCCCTTTTTGCTCACCCTTC
**************************************************....(((((.......))))).....((((....((((...(((((....)))))...))))....))))((((((((((((((((....((...(((.((((....))))...)))...))....))))))).........)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
........................................................................................................................................................................................................GTACAAAGTGTGGCGACGCCTG............................. 22 0 1 3.00 3 3 0 0
...............................................................................................................................................................................................................GTGTGGCGACGCCTGGAGA......................... 19 0 1 2.00 2 2 0 0
.......................................................................................................................................................................................................AGTACAAAGTGTGGCGACGCCT.............................. 22 0 1 2.00 2 2 0 0
...................................................................................................................................................................................................ATTAAGTACAAAGTGTGGCGACGCCTG............................. 27 3 1 2.00 2 1 1 0
.............................................................................................................................................................................................................AAGTGTGGCGACGCCTGGAGAAT....................... 23 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................GAATGACCCCCTTTTTGCTCACC.... 23 0 1 1.00 1 0 1 0
........................................................................................................................................................................................................GTACAAAGTGTGGCGACGCCTGGAG.......................... 25 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................TTAAGTACAAAGTGTGGCGACGCCT.............................. 25 2 1 1.00 1 1 0 0
.....................................................................................................................................................................................................TAAGTACAAAGTGTGGCGACGCCTGGAG.......................... 28 2 1 1.00 1 1 0 0
...............................................................................................................................................................................................................GTGTGGCGACGCCTGGAGAAT....................... 21 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................................ACAAAGTGTGGCGACGCCTTGAG.......................... 23 1 1 1.00 1 1 0 0
........................................................................................................................................................................................................GTACAAAGTGTGGCGACGC................................ 19 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................CAAAGTGTGGCGACGCCTGG............................ 20 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................AGTGTGGCGACGCCTGGA........................... 18 0 1 1.00 1 0 1 0
...................................................................................................................................................................................................ATTAAGTACAAAGTGTGGCGACGC................................ 24 3 1 1.00 1 1 0 0
............................................................................................................................................................................................................AAAGTGTGGCGACGCCTGGA........................... 20 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................ACAAAGTGTGGCGACGCCTGGAGAA........................ 25 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................GTACAAAGTGTGGCGACGCCTGGAGA......................... 26 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................ACAAAGTGTGGCGACGCCTGGA........................... 22 0 1 1.00 1 0 1 0
......................................................................................................................................................................................................AAGTACAAAGTGTGGCGACGCCTGGAG.......................... 27 1 1 1.00 1 1 0 0
........................................................................................................................................................................................................GTACAAAGTGTGGCGACGCCTGGA........................... 24 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................ATTAAGTACAAAGTGTGGCGA................................... 21 3 3 0.67 2 2 0 0
.........................................................................................................................TATCTAACCAGAAAGTCAC............................................................................................................... 19 3 20 0.15 3 0 3 0
...........................................................................................TGTTCGTATGAACGTCGAGATCTCAGG..................................................................................................................................... 27 0 9 0.11 1 0 0 1
.......................................................................................TGTCTTTTCGTATGAAGGGCG............................................................................................................................................... 21 3 20 0.05 1 0 0 1
..................TATATTCTTGATCAGGATCAATAGCCGA............................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0

Anti-sense strand reads

GGGTGGTATATTTCATATATATAAGAACTAGTCCTAGTTATCGGCTCAGTTAATCCGGTACAGGCAACCGGGCAAACAGGCAGACAGACAGACAAGCATACTTGCAGCTCTAGAGTCCTAGATATTTTGATCTTTCAGTGTGTGTATGGAAATAATAATTTAGACATTTTCATGAAGAAAAATATATAGGGACAAAACATCATGTTTCACACCGCTGCGGACCTCTTACTGGGGGAAAAACGAGTGGGAAG
**************************************************....(((((.......))))).....((((....((((...(((((....)))))...))))....))))((((((((((((((((....((...(((.((((....))))...)))...))....))))))).........)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V058
head
 M043
female body
 GSM1528802
follicle cells		 M056
embryo
.........................................................GTACGGGCCACCGGGCAA................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0
.................................................................................AGACAGAGCGACAAGCAT........................................................................................................................................................ 18 2 7 0.14 1 1 0 0 0
..............................................................................................AGCATACTTGCAGCTCTAGAGTCC..................................................................................................................................... 24 0 20 0.10 2 0 0 2 0
............................................................CAGGGAACCGGGCATTCAG............................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0
............................................................................CAGGCAGACAGGCAGACAAGCATACTT.................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0
.................................TTAGTTATCGGCTCAGTTAA...................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 0 1
..............................................................................................AGCATACTTGCAGCTCTAGAGTCCT.................................................................................................................................... 25 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:5891212-5891462 - dya_463 CCCACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCAATTA-GGCCATG-TCCGTTGGCCCGTTTGTCCGTCTGTCTGTCTGTTCG------------------------TATGAACGTC-----------------GAGATCTCAG---GA--TCTATAAAA-CTAGAAA------GT----------------------------CACACACATA--------------CCTTTAT----------------------TATTAAATCTGTAAAAGTACTTC------TT-----------TTT-ATATATC-CCTGTTT------------------------------------------------------------------------------------T-------------GTAGTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGAATGACCCC---CTTTTTG--CTCACCCTTC
droEre2 scaffold_4929:6608398-6608599 - TCGACCATATAAAGTGTATATATTCTTGATCAGAATCAATAGCCGAGTCAATCT-GGCCATG-TCCGTCCGTATGTC--------------------CG------------------------TATAAACGCC-----------------TCGATCTCAG---GA--ACTACAAAAGCTTAAAA------ACTAAAA---------------------------AAC---GC--------------------------------------------------C-------------------CAAACATTTTTG-AACAATT------------ACTT----------------------TT----------------------------------TTTTTTTCTTAATTT-------T-------------GT-TTGCAATTTTT---------------------A-----------------------A--------CGATA-----GTCCAGAAAATG---------------------------
droSec2 scaffold_18:861453-861660 + CCGACCATATAAAGTATATATATCCTTGATCAGGATCAATATCCGAGTCGATCT-AGCCGTG-TCCGCCTGTCCGTCT------------------------------------------------GAACGTC-----------------GAGATCTCAG---GA--TATAAAAAATCTAGCTG-----------------------------GCGAC------------GCCCTTGGGTA-T------CT---------GA--TAGTCGGGGAACTC-GACTATAGCATTATCTC------TT----------GTTT-GTATACT-ACAATAC-------------------------------------------------------------------------------------------------------------------------------------TGTAGCT-------ATAAAGTCTT--------------------------------------GCTATAC-------------
droSim2 2l:20816270-20816450 + CCGACAATATAAAGAATATATATTCTTGGTCAGGATCCATAGCCGAGTCGATCT-GAGCCTG-TCCGTCTACATGTCTGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--AAGCCCAGAACTGCCAT------GCTCACAC--------------------TTTTGAAA------------------------------------------------------TTTGTTTTGATA--------------------------------------------------------------------TT----------------------------------TTTTTATATTAGCCTTGTTC--A-------------TTTTTATAAA-----------------------------------------------------------------------------------------------------------
dm3 chr2L:19392940-19393157 - TAT-------GAAGTTTGTTGAA---TAATTAGGAT---------ACTTGATAT-ATTACCTTACCTTCAGTAATTTTG--CGTA------------CA------------------------TATGTATAAC-----------------AAATATATAACTGAA--TCTAAGAATGTTACCAC------ACTTACT-------------------------------------------------CCTGT----------------------TATTAAATTCTTAAAAGAATTCC------TA-----------TTTAATATGTCCCCTTTTT------------------------------------------------------------------------------------C-------------GTAGTACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAATGACCCC---CTTTTTG--CCCACCCATC
droEug1 scf7180000408987:317385-317627 - CCGACCCTATAAAGTATATATATTCTTGATCAGTATCAATAGCGAAGACGATTG-TGCCATG-TCCGTCTGTCCGTCCGACTGTC------------CG------------------------TATGAACGCT-----------------GAGATCTTAG---GA--ACTATAATGACGGAATG------ACT-----ACTCAAATCTAACTGGCATC------------GTTTTTGCGACCTC-----TTTAAAA-AGAGC--------------------T-------------------CA-------TTG-AAAAACT------------GATTTTCTTCTTT-T---------------------------------------------------------------------T-------------GT-GTGCGATGTGC---------------------G-----------------------G---------CGAC-----CCATATCGCTTGATTG---CCCTTTT-------------
droBia1 scf7180000301495:980862-981077 - CCGACCCTATAAAGTAATTATATTCTTGATCATCGTCACTGGACGATTCGATCCGATCTATG-TCCATCTGTCTGTCCGTCCGT------------------------------------TTCTACGCAAACCAGGTAGTATCGGACAACTATATCTTAT---GG--ATTCCATAGG-AATAAT------AAAAAAAC-----------------------------------------------------------------------------------------------ATT------TT-----------TTT-------------------------AAT-TATATCTTTGCTGTTT-------------------------------------------------------T-------------TTAACATATAA-------------------------------------------------C--TTC---CTAC-----GCTTGA-AAATAAC-----ACTTTTT-------------
droTak1 scf7180000410469:6957-7170 - CCGACCCTATAAACTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCT-AGCCATG-TCCGTCTGTCTGTCCGTCTGTC----TGTCTGTCTGTCTGTCTG------------TCCGTATGAACGCT-----------------GAGATCTCGG---AA--ACTATAAAAGCTAGAAG------ATTGACAT--------------------TTTGCATGCAGA--------------TTCTAGAAGTTT-CTACGCA-------------------GCGC---------CAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAAGGGCTG---------CCAC-----GCC------------------------------------
droEle1 scf7180000490630:23490-23689 - CCGACCATATAAAGTATATATAAACATGATCAGGATCAATGGTTGAGTCGATCC-AGCCATG-TCCATCTGTTTGTCCTTCTGTC----CGTCTG----------------------------TATAAA--CCACGCCCATTC-------TAATACCCAT---AC--ATCGTAAAAGTATGT------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------CTGTCATAAAATACTTATACTTTTTTTTAAAGAATTTTTTGATTTGA----------------------------------ATGT---------------------G-----------------------G---------CTAC-----GATTGTAG-------------------------------
droRho1 scf7180000766770:574-780 + CCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATTT-AGCCATG-TCCGTCTGTCCGTCTGTCTGTCTGTCTGTCTGTCCA------------------------TATGAACGCT-----------------GAGATCTCGG---AA--ACTATAAAAGCTAGAAG------ATTGGCAT--------------------TTTGCATGTAGA--------------TTTTTAGAAGTTCCTACGCA-------------------GCGC---------AAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAAATGGTG---------CCAC-----GCC------------------------------------
droFic1 scf7180000454116:49485-49713 - CAGACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTGAATCGAAAT-ATGTATG-TACGTCTGTCCGTCTGTCCGTCTGT--------CCTCCTGTCGG------------TTTCTATGTAAACTAGT---------------------CTCA---CAG--TTTTAAAGCTATCGT------GTTGAAAC--------------------TTTTCCAAAAGT---------------------------------------------------------------------------------------------------------------------TGTGTAGTTATTGTTTCTCATTAGATAAGCATGATTTT---------------------------------T-------------GAAATATAAAGTTT---------------------T-----------------------C---------TAAC-----GACTCTTGAATTAC-------------------------
droKik1 scf7180000302472:2116833-2117045 - CCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCT-AGCCATG-TCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCCACCT----GTCCGTTTCTACGCAAACTAGT---------------------CCGT---CAG--TTTTAAAGCTATCTG------AATGAAAC--------------------TTTGCATATAGT--------------CTTCTATATACT-CTCACTG-------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------ATATGTCG-GAGCG----GGC-CG---------------------------------
droAna3 scaffold_13045:77611-77827 - CCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATAT-AAGCCTG-TCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCGGTTTCTACGCAAACTAGT---------------------CGCT---CAG--TTTTAAAGCTATCGA------GTTGAAAC--------------------TTTGCACACAGC--------------CTTCTTTTCCTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------G--------GTAGTAC-----------ATATGTCG-GAACG----GCC-GG---------------------------------
droBip1 scf7180000391905:300-544 + CCGACCCTATAAAGTATATATATTATTGATCACGATCACCTCCTGAGTTGATAT-AAGCATG-TCCGTCTGTCCGTCTGTCTGTCTG--------------------------------TTTCTACGCGAACTAGT---------------------CTCT---CAG--TTTTAATGCTATCGA------CTTGAAAC--------------------TTTGCAGACACC--------------CTTCTTTCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TTTATATCCGATGTTTGCGATAT-----ATTTCCGGTTTTAACTGCAATGGT------ATACCAA-----------CT---TCGGCTCC-----GCCCGAAGATAGTTTT---CCTTTCT-------------
dp5 4_group1:2522657-2522872 + CCGACCCCATAAAGCATATATATTCTTGATCAGCATCAAAAGCCGAGTCGATTG-AGCCATG-TCTGCCTGTCCCTCTGTCCGTCCAT--------CGT------------------------GTTTGACGCC-----------------TAGTTCTCAG---AG--A----------TAGAAC------AACGATAT--------------------GTCGTATGCAAA--------------CTCTTGTGATAT-CCCACTG-------------------AATA---------AAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCGAAATTTTG---------CAACGCCCCTCGTAGAGAATGACCACTTCTCTTCT-------------
droPer2 scaffold_3:750662-750896 - CCGACCCCATAAAGTATATATATTCTTCATCAGCATCAATAGCCCAATCGATTG-AGCCATG-TCTATCTGTCCGTCTGTCAGTC-----------------------------------------------C-----------------TAGTGCTCAG---AG--ACTATAAGAGCTAGAGC------AATTAAAT--------------------TTGGTATCCACA--------------CTCCCGTTAATT-CGAACCG-------------------GTAC---------AAGTGT--------------------------------ATTTCACTTCCCC-C---------------------------------------------------------------------T-------------GTGGTGCAGAACGC---------------------T-----------------------GC-------CTGCC-----ACCTCGATAACCGGTTC---ATCCCTGGTGTCACCCTTC
droWil2 scf2_1100000004949:419021-419224 + CCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCT-AGCCATG-TCCGTCTGTCCGTCCGTCCGTCCGT--------CCG------------------------TATGAACACC-----------------TAGATCTCGG---AG--ACTATAAGAGCTAGAGCCACTTGGTATGCAT--------------------TTGGTATGCAGT--------------CTGGTGTAGTAT-GTACGCT-------------------TATC---------GAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAATTTTTG---------CCAC-----GCC------------------------------------
droVir3 scaffold_12730:180069-180272 - CCGACCCCATAAAGTATATGTATTCTTGATCAGCATCAACAGCCGAGTCGATAT-AGCCATG-ACCGTCTGTGGGTCTGTCCGTTTGACCGTCTGTCCGTCTGTCTG------------TTTCTATGCGAACTAGT---------------------CTCT---CAG--CTTCAAAGCTATCTA------AATAAAAT--------------------TTTGCAGAAGTC--------------ACTCTTTCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------T--------GCAGCAC-----------ATATGT---CAAA-----GCCTGGA--------------------------------
droMoj3 scaffold_6405:4534-4783 + CAGACCCCACAATGTATATATATTCTTGATCAGGGTGACGAGCTGAGTTGATTT-GGCCCTG-TCCGTCTGTCTGTCCGTCTGTC----CGTCCGTCCGTCTGTCCG------------TATGTATGAACGCG-----------------TCGATTTCAG---AA--GATATAAGAGCTAGAGA------CTTCAAAT--------------------TTTCTACA------------------CCTTTAT----------------------TGCTAGAGTCTCCA-------------------AATTTTTA-TGCAATT-------------------------TATACAATTTCGGTT--------------------------------------------------------T------------------------------------TTG-----------------------TTAAAATTT-AC-------CCCCC-----ACCTCAAAAATCACCCC---C----T-------------
droGri2 scaffold_1198:986-1207 + CCGACGCCATAAGGCATATATATTCTTAATAAGCAGCAGCAACCGATC-----T-GGCGCTG-TCCATTGGTCTGTATTTCTGTC----TGTCTGTCTGTCTGTCTG------------TCTGTATGAACTCG-----------------CCAATCTTAG---AG--TCCTCAGGAGTATGTTC------TTA-----TCTTTAAATTAGTTGTTATT------------GTTCTCA--------------TACTT--------------------------------------------------------------------------CATT------------------------------------------------------------------------------------T-------------ATATAAAAAAATAT---------------------T-----------------------T---------CATG-----TTATCGATAATTATCT---CCTTTTT-------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CCCACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCAATTA-GGCCATG-TCCGTTGGCCCGTTTGTCCGTCTGTCTGTCTGTTCG------------------------TATGAACGTC-----------------GAGATCTCAG---GA--TCTATAAAA-CTAGAAA------GT----------------------------CACACACATA--------------CCTTTAT----------------------TATTAAATCTGTAAAAGTACTTC------TT-----------TTT-ATATATC-CCTGTTT------------------------------------------------------------------------------------T-------------GTAGTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGAATGACCCC---CTTTTTG--CTCACCCTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTG..................................2213.00300000030000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGA..............................1912.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCT...................................2212.00200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGAAT............................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACCCC---CTTTTTG--CTCACC....2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAG...............................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGAAT............................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGAC-----GC.....................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGG.................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGT---------------------G-----------------------G---------CGAC-----GCCTGGA................................1811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGA................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGAA.............................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGAGA..............................2611.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGA................................2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGAC-----GCCTGGA................................2411.00100000010000
.............................................................................................TGTTCG------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................2790.11100100000000
..................TATATTCTTGATCAGGATCAATAGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000010000
droEre2
TCGACCATATAAAGTGTATATATTCTTGATCAGAATCAATAGCCGAGTCAATCT-GGCCATG-TCCGTCCGTATGTC--------------------CG------------------------TATAAACGCC-----------------TCGATCTCAG---GA--ACTACAAAAGCTTAAAA------ACTAAAA---------------------------AAC---GC--------------------------------------------------C-------------------CAAACATTTTTG-AACAATT------------ACTT----------------------TT----------------------------------TTTTTTTCTTAATTT-------T-------------GT-TTGCAATTTTT---------------------A-----------------------A--------CGATA-----GTCCAGAAAATG---------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................TAAACGCC-----------------TCGATCTCAG---GA--A.............................................................................................................................................................................................................................................................................................................................................................................................21130.0810000010
...........................................................................................................................TATAAACGCC-----------------TCGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................21150.0711000000
.........................................................................TGTC--------------------CG------------------------TATAAACGCC-----------------TCGATC.........................................................................................................................................................................................................................................................................................................................................................................................................22180.0611000000
.........................................................................................................................................................ATCTCAG---GA--ACTACAAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
............................................................................................................................ATAAACGCC-----------------TCGATCTCAG---..................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
droSec2
CCGACCATATAAAGTATATATATCCTTGATCAGGATCAATATCCGAGTCGATCT-AGCCGTG-TCCGCCTGTCCGTCT------------------------------------------------GAACGTC-----------------GAGATCTCAG---GA--TATAAAAAATCTAGCTG-----------------------------GCGAC------------GCCCTTGGGTA-T------CT---------GA--TAGTCGGGGAACTC-GACTATAGCATTATCTC------TT----------GTTT-GTATACT-ACAATAC-------------------------------------------------------------------------------------------------------------------------------------TGTAGCT-------ATAAAGTCTT--------------------------------------GCTATAC-------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................CGGGGAACTC-GACTATAGC.....................................................................................................................................................................................................................................................................19200.0511000
..................................................................................................................................................................................................................................................T------CT---------GA--TAGTCGGGGAACTC-GA............................................................................................................................................................................................................................................................................21200.0510100
..................................................................................................................................................................................................................................................T------CT---------GA--TAGTCGGGGAACTC-..............................................................................................................................................................................................................................................................................19200.0510010
................................................................................................................................................................................................................................................A-T------CT---------GA--TAGTCGGGGAACTC-GA............................................................................................................................................................................................................................................................................22200.0510100
.................................................................................................................................................................................................................................................................................AACTC-GACTATAGCATTATCT..............................................................................................................................................................................................................................................................21200.0511000
droSim2
CCGACAATATAAAGAATATATATTCTTGGTCAGGATCCATAGCCGAGTCGATCT-GAGCCTG-TCCGTCTACATGTCTGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--AAGCCCAGAACTGCCAT------GCTCACAC--------------------TTTTGAAA------------------------------------------------------TTTGTTTTGATA--------------------------------------------------------------------TT----------------------------------TTTTTATATTAGCCTTGTTC--A-------------TTTTTATAAA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................C-----------------GAGATCTCAG---GA--AAGCCCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................24113.001300100090201000000
...........................................CGAGTCGATCT-GAGCCTG-TCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.00871000000000000000
...............................................TCGATCT-GAGCCTG-TCCGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.00660000000000000000
........................................................................................................................................................GATCTCAG---GA--AAGCCCAGAACTGCCA..............................................................................................................................................................................................................................................................................................................................................................................2614.00400000000003100000
....................................................................................................................................C-----------------GAGATCTCAG---GA--AAGCCCAGAACTGC................................................................................................................................................................................................................................................................................................................................................................................2714.00400200010010000000
........................................................................................................................................................GATCTCAG---GA--AAGCCCAGAACTGCC...............................................................................................................................................................................................................................................................................................................................................................................2514.00400100000003000000
........................................................................................................................................................GATCTCAG---GA--AAGCCCAGAACTGC................................................................................................................................................................................................................................................................................................................................................................................2414.00400000000004000000
........................................................................................................................................................GATCTCAG---GA--AAGCCCAGA.....................................................................................................................................................................................................................................................................................................................................................................................1913.00300000000003000000
....................................................................................................................................C-----------------GAGATCTCAG---GA--AAGCCCAGAACT..................................................................................................................................................................................................................................................................................................................................................................................2512.00200100010000000000
.........................................GCCGAGTCGATCT-GAGCCTG-TCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000101000000
.......................................................................CATGTCTGTCCG----------------------------------------TATGAACGTC-----------------G..............................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000200000000000
......................................................................ACATGTCTGTCCG----------------------------------------TATGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200010100000000000
........................................................................................................................................................GATCTCAG---GA--AAGCCCAGAACTG.................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
....................................................................................................................................C-----------------GAGATCTCAG---GA--AAGCCCAGAACTGCCA..............................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
............................................GAGTCGATCT-GAGCCTG-TCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
....................................CCATAGCCGAGTCGATCT-GAGCCTG-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................TACATGTCTGTCCG----------------------------------------TATGAACGTC-----------------GAA............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..................................................................................................................................GTC-----------------GAGATCTCAG---GA--AAGCCCA.......................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.................................................................CGTCTACATGTCTGTCCG----------------------------------------TATGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.............GAATATATATTCTTGGTCAGGATCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
......................TTCTTGGTCAGGATCCATAGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.............................................AGTCGATCT-GAGCCTG-TCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................................................................ACATGTCTGTCCG----------------------------------------TATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.......................................................................CATGTCTGTCCG----------------------------------------TATGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
.....................................................T-GAGCCTG-TCCGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
................................................CGATCT-GAGCCTG-TCCGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
..................................................................GTCTACATGTCTGTCCG----------------------------------------TATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................................................................................................................................................TCTCAG---GA--AAGCCCAGAACT..................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
......................................................................................................................................................GAGATCTCAG---GA--AAGCCCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.......................................................................................................................................................AGATCTCAG---GA--AAGCCC........................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.......................................................................................................................................................................................T------GCTCACAC--------------------TTTTGAAA------------------------------------------------------TTTGTTTTGA...................................................................................................................................................................................................................................................................2711.00100000000100000000
...................................................................................................................................TC-----------------GAGATCTCAG---GA--AAGCCCAGAACTG.................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
...............................................TCGATCT-GAGCCTG-TCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
...................................................................TCTACATGTCTGTCCG----------------------------------------TATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--AA............................................................................................................................................................................................................................................................................................................................................................................................2881.00800000010000043000
..........................................................................................................................................................TCTCAG---GA--AAGCCCAGAACTGCCAT------GC.....................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...........................................CGAGTCGATCT-GAGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.............GAATATATATTCTTGGTCAGGATCCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..............................................GTCGATCT-GAGCCTG-TCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............................................................................................................................................................CAG---GA--AAGCCCAGAACTG.................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................................................TCT-GAGCCTG-TCCGTCTACATGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
....................................................................................................................................C-----------------GAGATCTCAG---GA--AAGCCCA.......................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..........................TGGTCAGGATCCATAGCCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................................TACATGTCTGTCCG----------------------------------------TATGAACGTC-----------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--AAGC..........................................................................................................................................................................................................................................................................................................................................................................................3020.50100000001000000000
............................................................................CTGTCCG----------------------------------------TATGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................16200.5010000000100000000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................20200.45900000000009000000
............................................................................CTGTCCG----------------------------------------TATGAACGTC-----------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................19200.40800000000008000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................27200.35700000000430000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................25200.30600000000060000000
..............................................................................GTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--..............................................................................................................................................................................................................................................................................................................................................................................................27200.25500000003020000000
...................ATATTCTTGGTCAGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100100000000000000
..............................................................................GTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000010030000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--..............................................................................................................................................................................................................................................................................................................................................................................................28200.20400000000040000000
................................................................................CCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--..............................................................................................................................................................................................................................................................................................................................................................................................25200.20400000000001030000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--..............................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000400000000
.........................................................................TGTCTGTCCG----------------------------------------TATGAACGTC-----------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................24110.18200000010010000000
...............................................................................................................................AACGTC-----------------GAGATCTCAG---GA--AA............................................................................................................................................................................................................................................................................................................................................................................................20120.17200200000000000000
...........................................................................TCTGTCCG----------------------------------------TATGAACGTC-----------------GAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................24200.15300000000100020000
.............................................................................TGTCCG----------------------------------------TATGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000000003000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................21200.15300000000010002000
....................................CCATAGCCGAGTCGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1770.14100000000001000000
..............................................................................................................................................................................................................................................................................................TTGATA--------------------------------------------------------------------TT----------------------------------TTTTTATATT...............................................................................................................................................1870.14100000001000000000
.............................TCAGGATCCATAGCCGAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.13100000001000000000
.............................................................................................................................TGAACGTC-----------------GAGATCTCAG---GA--..............................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCT........................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000001100000000
............................................................................CTGTCCG----------------------------------------TATGAACGTC-----------------GAGATCT........................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000001010000000
...........................................................................TCTGTCCG----------------------------------------TATGAACGTC-----------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000002000000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---..................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000000020000
......................................ATAGCCGAGTCGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
............................................................................CTGTCCG----------------------------------------TATGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000020000000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GG--..............................................................................................................................................................................................................................................................................................................................................................................................26200.10200000001000010000
..............................................................................GTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GG--..............................................................................................................................................................................................................................................................................................................................................................................................27200.10200200000000000000
.......................................TAGCCGAGTCGATCT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
............................................................................CTGTCCG----------------------------------------TATGAACGTC-----------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000020000000000
.........................................................................TGTCTGTCCG----------------------------------------TATGAACGTC-----------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................22130.08100000010000000000
..............................................................................GTCCG----------------------------------------TATGAACGTC-----------------GAGATCT........................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000000000
..............................................................................GTCCG----------------------------------------TATGAACGTC-----------------GAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
..........................................................................GTCTGTCCG----------------------------------------TATGAACGTC-----------------GAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000001000000000
...........................................................................TCTGTCCG----------------------------------------TATGAACGTC-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
............................................................................CTGTCCG----------------------------------------TATGAACGTC-----------------GAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
..................................................................................G----------------------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GT--..............................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000001000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000000000
.................................................................................CG----------------------------------------TATGAACGTC-----------------GAGATCT........................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000001000000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000010000000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATCT........................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000100000000
....................................................................................................................................C-----------------GAGATCTCAG---GA--AA............................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
...........................................................................TCTGTCCG----------------------------------------TATGAACGTC-----------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000010000
...............................................................................TCCG----------------------------------------TATGAACGTC-----------------GAGATCTC.......................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000000000
..........................................................................................................................................................................................................................TTTTGAAA------------------------------------------------------TTTGTTT......................................................................................................................................................................................................................................................................15200.05100000000001000000
...........................................................................TCTGTCCG----------------------------------------TATGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000001000000000
................................................................................CCG----------------------------------------TATGAACGTC-----------------GAGATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000000000
................................................................................CCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---G.................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000000000
................................................................................CCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GA--A.............................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
.............................................................................TGTCCG----------------------------------------TATGAACGTC-----------------GAGATCTCAG---GT--..............................................................................................................................................................................................................................................................................................................................................................................................28200.05100000001000000000
dm3
TAT-------GAAGTTTGTTGAA---TAATTAGGAT---------ACTTGATAT-ATTACCTTACCTTCAGTAATTTTG--CGTA------------CA------------------------TATGTATAAC-----------------AAATATATAACTGAA--TCTAAGAATGTTACCAC------ACTTACT-------------------------------------------------CCTGT----------------------TATTAAATTCTTAAAAGAATTCC------TA-----------TTTAATATGTCCCCTTTTT------------------------------------------------------------------------------------C-------------GTAGTACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAATGACCCC---CTTTTTG--CCCACCCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGG.................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGA................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGA..............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGTC-----GC.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAA.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAAT............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGA..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTG..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAAT............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAAT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----GCCTGGAGAATGACCCC---CT.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGT---------------------G-----------------------G---------CGTC-----GCCTGGAGAATGAC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTTAATATGTCCCCTTTTT------------------------------------------------------------------------------------C-------------GTAG.................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CCGACCCTATAAAGTATATATATTCTTGATCAGTATCAATAGCGAAGACGATTG-TGCCATG-TCCGTCTGTCCGTCCGACTGTC------------CG------------------------TATGAACGCT-----------------GAGATCTTAG---GA--ACTATAATGACGGAATG------ACT-----ACTCAAATCTAACTGGCATC------------GTTTTTGCGACCTC-----TTTAAAA-AGAGC--------------------T-------------------CA-------TTG-AAAAACT------------GATTTTCTTCTTT-T---------------------------------------------------------------------T-------------GT-GTGCGATGTGC---------------------G-----------------------G---------CGAC-----CCATATCGCTTGATTG---CCCTTTT-------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCGACCCTATAAAGTAATTATATTCTTGATCATCGTCACTGGACGATTCGATCCGATCTATG-TCCATCTGTCTGTCCGTCCGT------------------------------------TTCTACGCAAACCAGGTAGTATCGGACAACTATATCTTAT---GG--ATTCCATAGG-AATAAT------AAAAAAAC-----------------------------------------------------------------------------------------------ATT------TT-----------TTT-------------------------AAT-TATATCTTTGCTGTTT-------------------------------------------------------T-------------TTAACATATAA-------------------------------------------------C--TTC---CTAC-----GCTTGA-AAATAAC-----ACTTTTT-------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCGACCCTATAAACTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCT-AGCCATG-TCCGTCTGTCTGTCCGTCTGTC----TGTCTGTCTGTCTGTCTG------------TCCGTATGAACGCT-----------------GAGATCTCGG---AA--ACTATAAAAGCTAGAAG------ATTGACAT--------------------TTTGCATGCAGA--------------TTCTAGAAGTTT-CTACGCA-------------------GCGC---------CAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAAGGGCTG---------CCAC-----GCC------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCGACCATATAAAGTATATATAAACATGATCAGGATCAATGGTTGAGTCGATCC-AGCCATG-TCCATCTGTTTGTCCTTCTGTC----CGTCTG----------------------------TATAAA--CCACGCCCATTC-------TAATACCCAT---AC--ATCGTAAAAGTATGT------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------CTGTCATAAAATACTTATACTTTTTTTTAAAGAATTTTTTGATTTGA----------------------------------ATGT---------------------G-----------------------G---------CTAC-----GATTGTAG-------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATTT-AGCCATG-TCCGTCTGTCCGTCTGTCTGTCTGTCTGTCTGTCCA------------------------TATGAACGCT-----------------GAGATCTCGG---AA--ACTATAAAAGCTAGAAG------ATTGGCAT--------------------TTTGCATGTAGA--------------TTTTTAGAAGTTCCTACGCA-------------------GCGC---------AAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAAATGGTG---------CCAC-----GCC------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTGAATCGAAAT-ATGTATG-TACGTCTGTCCGTCTGTCCGTCTGT--------CCTCCTGTCGG------------TTTCTATGTAAACTAGT---------------------CTCA---CAG--TTTTAAAGCTATCGT------GTTGAAAC--------------------TTTTCCAAAAGT---------------------------------------------------------------------------------------------------------------------TGTGTAGTTATTGTTTCTCATTAGATAAGCATGATTTT---------------------------------T-------------GAAATATAAAGTTT---------------------T-----------------------C---------TAAC-----GACTCTTGAATTAC-------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCT-AGCCATG-TCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCCACCT----GTCCGTTTCTACGCAAACTAGT---------------------CCGT---CAG--TTTTAAAGCTATCTG------AATGAAAC--------------------TTTGCATATAGT--------------CTTCTATATACT-CTCACTG-------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------ATATGTCG-GAGCG----GGC-CG---------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATAT-AAGCCTG-TCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCGGTTTCTACGCAAACTAGT---------------------CGCT---CAG--TTTTAAAGCTATCGA------GTTGAAAC--------------------TTTGCACACAGC--------------CTTCTTTTCCTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------G--------GTAGTAC-----------ATATGTCG-GAACG----GCC-GG---------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................CTGAGTCGATAT-AAGCCTG-TCCGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26100.101001000
...............................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------G--------GTAGTAC-----------ATATGTCG-GAACG----GCC-A..................................29150.071100000
...............................................................................................................................................................................................TTGAAAC--------------------TTTGCACACAGC--------------CT...............................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................T---CAG--TTTTAAAGCTATCGA------.......................................................................................................................................................................................................................................................................................................................................................................19200.051100000
...................................................................................................TCTGTCCGTCTGTCTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
..............................................................................GTCTGTCTGTCCGTCTGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.............................................................G-TCCGTCTGTCCGTCTGTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
CCGACCCTATAAAGTATATATATTATTGATCACGATCACCTCCTGAGTTGATAT-AAGCATG-TCCGTCTGTCCGTCTGTCTGTCTG--------------------------------TTTCTACGCGAACTAGT---------------------CTCT---CAG--TTTTAATGCTATCGA------CTTGAAAC--------------------TTTGCAGACACC--------------CTTCTTTCCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------TTTATATCCGATGTTTGCGATAT-----ATTTCCGGTTTTAACTGCAATGGT------ATACCAA-----------CT---TCGGCTCC-----GCCCGAAGATAGTTTT---CCTTTCT-------------SizeHit CountTotal NormTotal
No Reads
dp5
CCGACCCCATAAAGCATATATATTCTTGATCAGCATCAAAAGCCGAGTCGATTG-AGCCATG-TCTGCCTGTCCCTCTGTCCGTCCAT--------CGT------------------------GTTTGACGCC-----------------TAGTTCTCAG---AG--A----------TAGAAC------AACGATAT--------------------GTCGTATGCAAA--------------CTCTTGTGATAT-CCCACTG-------------------AATA---------AAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCGAAATTTTG---------CAACGCCCCTCGTAGAGAATGACCACTTCTCTTCT-------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................GTCGATTG-AGCCATG-TCTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2161.1770700000000
................................................CGATTG-AGCCATG-TCTGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2151.0050500000000
.............................................AGTCGATTG-AGCCATG-TCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.8350210002000
.........................TTGATCAGCATCAAAAGCCGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.771001000000000
....................................................TG-AGCCATG-TCTGCCTGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.7530300000000
..................................................ATTG-AGCCATG-TCTGCCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.7530300000000
...................ATATTCTTGATCAGCATCAAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.60120930000000
.........................TTGATCAGCATCAAAAGCCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.5090800100000
.........................TTGATCAGCATCAAAAGCCGAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.3560600000000
...................ATATTCTTGATCAGCATCAAAAGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.3140400000000
...................ATATTCTTGATCAGCATCAAAAGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.3140400000000
...................................................TTG-AGCCATG-TCTGCCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
.............................................AGTCGATTG-AGCCATG-TCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000002030
..................................................................................................T------------------------GTTTGACGCC-----------------TAGTTCTCAG---AG--A----------...................................................................................................................................................................................................................................................................................................................................................................................2480.2520000000020
..................................................ATTG-AGCCATG-TCTGCCTGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
.........................TTGATCAGCATCAAAAGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.2140310000000
...............................................TCGATTG-AGCCATG-TCTGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000000
..................................................ATTG-AGCCATG-TCTGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010100000000
.........................TTGATCAGCATCAAAAGCCGAGTCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.1820100001000
.........................TTGATCAGCATCAAAAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.1730300000000
............................................GAGTCGATTG-AGCCATG-TCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000001000
...............................................TCGATTG-AGCCATG-TCTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000000
..............................................GTCGATTG-AGCCATG-TCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000000
...................ATATTCTTGATCAGCATCAAAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530300000000
...................ATATTCTTGATCAGCATCAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530200100000
.....................ATTCTTGATCAGCATCAAAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
................................................CGATTG-AGCCATG-TCTGCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010100000000
................................GCATCAAAAGCCGAGTCGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910100000000
.........................TTGATCAGCATCAAAAGCCGAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.0810100000000
..........................TGATCAGCATCAAAAGCCGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.0810100000000
....................TATTCTTGATCAGCATCAAAAGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.0710100000000
.....................................................................TGTCCCTCTGTCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16160.0610000000100
................TATATATTCTTGATCAGCATCAAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.0610100000000
..........................TGATCAGCATCAAAAGCCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.0610100000000
............................................................................................................................TTTGACGCC-----------------TAGTTCTCAG---A.................................................................................................................................................................................................................................................................................................................................................................................................20190.0510100000000
..........................TGATCAGCATCAAAAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510100000000
..............................................................................................................................TGACGCC-----------------TAGTTCTCAG---AG--..............................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...................ATATTCTTGATCAGCATCAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...............ATATATATTCTTGATCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
...................ATATTCTTGATCAGCATCAAAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..............................................................................................................................TGACGCC-----------------TAGTTCTCAG---AG--A----------...................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.....................ATTCTTGATCAGCATCAAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
...................ATATTCTTGATCAGCATCAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.........................TTGATCAGCATCAAAAGCCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
....................TATTCTTGATCAGCATCAAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
CCGACCCCATAAAGTATATATATTCTTCATCAGCATCAATAGCCCAATCGATTG-AGCCATG-TCTATCTGTCCGTCTGTCAGTC-----------------------------------------------C-----------------TAGTGCTCAG---AG--ACTATAAGAGCTAGAGC------AATTAAAT--------------------TTGGTATCCACA--------------CTCCCGTTAATT-CGAACCG-------------------GTAC---------AAGTGT--------------------------------ATTTCACTTCCCC-C---------------------------------------------------------------------T-------------GTGGTGCAGAACGC---------------------T-----------------------GC-------CTGCC-----ACCTCGATAACCGGTTC---ATCCCTGGTGTCACCCTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................CA--------------CTCCCGTTAATT-CGAACCG-------------------GTAC---------A............................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................TAAGAGCTAGAGC------AATTT..................................................................................................................................................................................................................................................................................................................................................................1850.402000002
....................................................TG-AGCCATG-TCTATCTGTCCGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331010000
droWil2
CCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCT-AGCCATG-TCCGTCTGTCCGTCCGTCCGTCCGT--------CCG------------------------TATGAACACC-----------------TAGATCTCGG---AG--ACTATAAGAGCTAGAGCCACTTGGTATGCAT--------------------TTGGTATGCAGT--------------CTGGTGTAGTAT-GTACGCT-------------------TATC---------GAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAATTTTTG---------CCAC-----GCC------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................ATCT-AGCCATG-TCCGTCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.5010010000
................................................................................................................................................................................................................................TGCAGT--------------CTGGTGTAGTAT-GTACGC..............................................................................................................................................................................................................................................................................................2430.33101000
..............................................................................................................................GAACACC-----------------TAGATCTCGG---AG--A.............................................................................................................................................................................................................................................................................................................................................................................................20200.20400400
........................................AACCGAGTCGATCT-AGCCATG-TCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300030
.....CCCACAAAGTATATATATTCTTGATCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.15303000
..........................................................................GTCCGTCCGTCCGT--------CCG------------------------TATGAACACC-----------------G..............................................................................................................................................................................................................................................................................................................................................................................................................28200.10220000
........ACAAAGTATATATATTCTTGATCAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
...............................................TCGATCT-AGCCATG-TCCGTCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
...............................................................................TCCGTCCGT--------CCG------------------------TATGAACACC-----------------TAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................28200.10202000
.........................................................................................................................................................................TATAAGAGCTAGAGCCACT.........................................................................................................................................................................................................................................................................................................................................................................19110.09100010
.............GTATATATATTCTTGATCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..............................................................................GTCCGTCCGT--------CCG------------------------TATGAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................AGCCATG-TCCGTCTGTCCGTCCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
................................................................................CCGTCCGT--------CCG------------------------TATGAACACC-----------------TAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...............................AGGATCAACAACCGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
....................................................CT-AGCCATG-TCCGTCTGTCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...................................TCAACAACCGAGTCGATCT-AGCCATG-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................GG---AG--ACTATAAGAGCTAGAGC.............................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................CCATG-TCCGTCTGTCCGTCCGTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
..................TATATTCTTGATCAGGATCAACAACCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
.......................................................................................................................................................................................................................................................................T-------------------TATC---------GAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------TCAAATT.............................................................21200.05101000
.......................................................................TCCGTCCGTCCGTCCGT--------CCG------------------------TA........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110000
...........................................................................................................................TATGAACACC-----------------TAGATCTCGG---AG--ACTAT.........................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...........................................................ATG-TCCGTCTGTCCGTCCGTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
droVir3
CCGACCCCATAAAGTATATGTATTCTTGATCAGCATCAACAGCCGAGTCGATAT-AGCCATG-ACCGTCTGTGGGTCTGTCCGTTTGACCGTCTGTCCGTCTGTCTG------------TTTCTATGCGAACTAGT---------------------CTCT---CAG--CTTCAAAGCTATCTA------AATAAAAT--------------------TTTGCAGAAGTC--------------ACTCTTTCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------T--------GCAGCAC-----------ATATGT---CAAA-----GCCTGGA--------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................TATTCTTGATCAGCATCAACAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.408000000000000000000000000000000060010000100000000000000000000000
..............TATATGTATTCTTGATCAGCATCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.402000000000000000000000001000100000000000000000000000000000000000
.........................TTGATCAGCATCAACAGCCGAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.255000000000000000000000000000000001000000400000000000000000000000
.......................TCTTGATCAGCATCAACAGCCGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.255000000000000000000000000000000000500000000000000000000000000000
....................................CAACAGCCGAGTCGATAT-AGCCATG-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251000000000000000000000000001000000000000000000000000000000000000
..............TATATGTATTCTTGATCAGCATCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.201000000000000000000000000000000010000000000000000000000000000000
...................GTATTCTTGATCAGCATCAACAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.171001000000000000000000000000000000000000000000000000000000000000
.............................TCAGCATCAACAGCCGAGTCGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000020000000000000000000000000000000000000000000000000000000
...................GTATTCTTGATCAGCATCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.101000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................TTCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------T--------GCAGCAC-----------ATC......................................................21200.102000002000000000000000000000000000000000000000000000000000000000
.........TAAAGTATATGTATTCTTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081000000000000000000000000000100000000000000000000000000000000000
..............TATATGTATTCTTGATCAGCATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.081000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------GC--------A------------------------------------------------T--------GCAGCAC-----------ATATG....................................................23140.071001000000000000000000000000000000000000000000000000000000000000
.......................TCTTGATCAGCATCAACAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010000000000000000000000000000000000000000000000000000000000
...................................TCAACAGCCGAGTCGATAT-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
.........................TTGATCAGCATCAACAGCCGAGTCGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000000100000000000000000000000000000
..........................TGATCAGCATCAACAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
...................................TCAACAGCCGAGTCGATAT-AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.................ATGTATTCTTGATCAGCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
......................TTCTTGATCAGCATCAACAGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
....................TATTCTTGATCAGCATCAACAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
...................................................................................................TCTGTCTG------------TTTCTATGCGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
droMoj3
CAGACCCCACAATGTATATATATTCTTGATCAGGGTGACGAGCTGAGTTGATTT-GGCCCTG-TCCGTCTGTCTGTCCGTCTGTC----CGTCCGTCCGTCTGTCCG------------TATGTATGAACGCG-----------------TCGATTTCAG---AA--GATATAAGAGCTAGAGA------CTTCAAAT--------------------TTTCTACA------------------CCTTTAT----------------------TGCTAGAGTCTCCA-------------------AATTTTTA-TGCAATT-------------------------TATACAATTTCGGTT--------------------------------------------------------T------------------------------------TTG-----------------------TTAAAATTT-AC-------CCCCC-----ACCTCAAAAATCACCCC---C----T-------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------T------------------------------------TTG-----------------------TTAAAATTT-AC-------CCCCC-----ACC....................................24200.306000060
..............................CAGGGTGACGAGCTGAGTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255500000
....................................................................................C----CGTCCGTCCGTCTGTCCG------------TA............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...................ATATTCTTGATCAGGGTGACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
.........................................................................................................................................................................................................................................................................................................................A-TGCAATT-------------------------TATACAATTTCGGTT--------------------------------------------------------T------------------------------------TTG-----------------------....................................................................27200.102200000
.......................................................................................................TCCG------------TATGTATGAACGCG-----------------TCGATTTC.......................................................................................................................................................................................................................................................................................................................................................................................................26200.102000020
.................................................................................TGTC----CGTCCGTCCGTCTGTCCG------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
.....................................................................................................................................................................................................................................................CTTTAT----------------------TGCTAGAGTCTCC.......................................................................................................................................................................................................................................................................19200.051100000
....................TATTCTTGATCAGGGTGACGAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
...............................................................................................................................................................................AGCTAGAGA------CTTCAAAT--------------------TTT........................................................................................................................................................................................................................................................................................................................................20200.051100000
.................................................................................................................................CGCG-----------------TCGATTTCAG---AA--GATAT.........................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...............................................................................................................................................................G---AA--GATATAAGAGCTAGAGA------CTTCA..................................................................................................................................................................................................................................................................................................................................................................25200.051000100
............................................................................................................................................................................AAGAGCTAGAGA------CTTCAAAT--------------------TTT........................................................................................................................................................................................................................................................................................................................................23200.051100000
......................................CGAGCTGAGTTGATTT-GGCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
....................................................................................................CTGTCCG------------TATGTATGAACGCG-----------------TCG............................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
CCGACGCCATAAGGCATATATATTCTTAATAAGCAGCAGCAACCGATC-----T-GGCGCTG-TCCATTGGTCTGTATTTCTGTC----TGTCTGTCTGTCTGTCTG------------TCTGTATGAACTCG-----------------CCAATCTTAG---AG--TCCTCAGGAGTATGTTC------TTA-----TCTTTAAATTAGTTGTTATT------------GTTCTCA--------------TACTT--------------------------------------------------------------------------CATT------------------------------------------------------------------------------------T-------------ATATAAAAAAATAT---------------------T-----------------------T---------CATG-----TTATCGATAATTATCT---CCTTTTT-------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:39 PM