ID:

dya_46

 Coordinate:

3L:3844770-3844833 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.7 -27.7 -27.4

Flybase annnotation

utr5 [utr5_plus_6624]

No Repeatable elements found

Sense Strand Reads

TTGTTTGCTATAGGCGGGTAAAATAAGTAAAGTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGTGTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAATGAGTATATATAAACTATGGTCAA

***********************************..(((..((((.(((.(((((.((((((((.((((((..................)))))))))))))).))))).))).))))..)))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 V046

embryo

 M026

head

 V120

male body		 M043

female body

 V058

head

 V052

head

 SRR1275484

Male prepupae		 SRR1275488

Male larvae
..................................................CATCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 0 1 1520.00 1520 1211 206 68 15 16 4 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGT............................................................................................ 22 0 1 151.00 151 34 16 27 33 21 12 8 0 0
..................................................CATTGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 53.00 53 53 0 0 0 0 0 0 0 0
..................................................CGTCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 37.00 37 36 0 0 0 1 0 0 0 0
...........................................................................................CATTCAATTTCTGAACGGTAGA................................................... 22 0 1 35.00 35 30 2 0 0 3 0 0 0 0
..................................................CACCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 31.00 31 31 0 0 0 0 0 0 0 0
...................................................ATCGTGCAGAAGTTTGAGTGTCC.......................................................................................... 23 0 1 30.00 30 29 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTCT.......................................................................................... 24 1 1 29.00 29 11 0 12 3 2 1 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGAC........................................................................................... 23 1 1 28.00 28 26 0 2 0 0 0 0 0 0
...................................................ATCGTGCAGAAGTTTGAGTGTC........................................................................................... 22 0 1 22.00 22 15 4 1 0 2 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGC............................................................................................ 22 1 1 18.00 18 12 0 4 2 0 0 0 0 0
..................................................CATCGGGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 14.00 14 12 2 0 0 0 0 0 0 0
..................................................CATCGTGCAGCAGTTTGAGTGTC........................................................................................... 23 1 1 14.00 14 11 3 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTCC.......................................................................................... 24 0 1 13.00 13 11 0 1 1 0 0 0 0 0
..................................................CATCTTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 10.00 10 10 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGGGTC........................................................................................... 23 1 1 9.00 9 9 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTG............................................................................................. 21 0 1 9.00 9 0 1 0 5 2 1 0 0 0
..................................................CTTCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGGTTGAGTGTC........................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0 0 0 0
..................................................CATCGTTCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 5.00 5 0 0 0 0 0 0 0 3 2
...................................................ATCGTGCAGAAGTTTGAGTGTCT.......................................................................................... 23 1 1 5.00 5 1 0 3 0 1 0 0 0 0
...........................................................................................CATTCAATTTCTGAACGGTAGT................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0
...........................................................................................CGTTCAATTTCTGAACGGTAGA................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
............................................................................................ATTCAATTTCTGAACGGTAGAGT................................................. 23 1 1 4.00 4 2 0 2 0 0 0 0 0 0
..................................................TATCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGACTGTC........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................CATCGTGAAGAAGTTTGAGTGTC........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTTTC........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
................................TAAACAGCTAATCAACTCC................................................................................................................. 19 0 1 4.00 4 3 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 3.00 3 1 1 0 0 0 0 0 1 0
..................................................CATCGTGCAGAAGTTTGAGT.............................................................................................. 20 0 1 3.00 3 0 0 0 2 1 0 0 0 0
...................................................AGCGTGCAGAAGTTTGAGTGTC........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................GTGCAGAAGTTTGAGTGTC........................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGCC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTGGAGTGTC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTAAGTGTC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................CCATCGTGCAGAAGTTTGAGTGTC........................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTT........................................................................................... 23 1 1 3.00 3 1 0 0 2 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGCGTC........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGCTTGAGTGTC........................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0 0 0 0
....................................................TCGTGCAGAAGTTTGAGTGTCCTG........................................................................................ 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0
...............................GTAAACAGCTAATCAACTC.................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................AGTCAATTTCTGAACGGTAGAGC................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGTGTGTC........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................CATCGTGTAGAAGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGAGTC........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGG............................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTCGAGTGTC........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTG........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................CATTGTGCAGAAGTTTGAGTATC........................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAATTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTATC........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
...................................................ATAGTGCAGAAGTTTGAGTGTCC.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0
..................................................CATCGTGCCGAAGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................CTTTCAATTTCTGAACGGTAGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGACGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGCGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................CATCGTGCAGACGTTTGAGTGT............................................................................................ 22 1 1 2.00 2 0 0 1 0 0 1 0 0 0
...................................................ATCGTGCAGAAGTTTGAGTGTCCT......................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGCTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................ATCGTGCAGAAGTTTGAGTGTACTG........................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGTAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGA............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................CATCGGGCAGAAGTTTGAGAGTT........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAATGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................AATCGTGCAGAAGTTTGAGTG............................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CATCGTGCAGGAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CACCGTGCAGCAGTTTGAATGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTCAG............................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................ATCGTTCAGAAGTTTGAGTGTCC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................CGCGCAGAAGTTTGAGTGTC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................AGCGTGCAGAGGTTTGAGTGTC........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGGGTG............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCATAAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CGTCGTGCAGAAGTTTGAGTGC............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGA.............................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................TGTCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CAACGTGCAGAAGTTTCAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................TCGTGCAGAAGTTTGAGTGTCCC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTCTT......................................................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CATCGTGCAGAAGTTTGAGC.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................ATCGTGCAGAAGTTTGAGTGTCCTG........................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CACCTTGCAGAAGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................TGAATTTCTGAACGGTAGA................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATGGTGCAGAAGTTTGAGTGTGT.......................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................CATCGTGCTGAAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGGTTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAATCTTGAGTGT............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGAGAC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCTTGCAGAAGTTTGAGTGAC........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CGCCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................TGCAATTTCTGAACGGTAGAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................ATCTTGCAGAAGTTTGAGTGTCC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CATCCAATTTCTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................TAAACAGCTAATCAACTC.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCCGACGTTTGAGTGT............................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CATCGTGCAGAATTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................TATCTTGCAGAAGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTCA.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................CAATTTCTGAACGGTAGT................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAATCTTGAGTGTG........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGATTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGATTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATTGTGCAGAAGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................ATAGTGCAGAAGCTTGAGTGTCC.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................GATCCATCGTGCAGAAGTTTGAGTGTC........................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGAAGAAGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CACCGTGCAGAAGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CATTCAATTTCTGAACGGTAGC................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................TTCAATTTCTGAACGGTAGAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTAAGTGTA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATTGTGCAGAAGTTTGAG............................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CCAGCGTGCAGAAGTTTGAGTGTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGGGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGAGCAGACGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CTTCGCGCACAAGTTTGAGTGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATTGTGCAGAAGTTTTAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................TCGTGCAGAAGTTTGAGTGT............................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTT............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................TATCGTGCAGAAGTTTGAGTGTCC.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGCTGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................ATAGTGCAGAAGTTTGAGTGTC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CACTCAATTTCTGAACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CAGCGTGCAGAAGCTTGAGTGC............................................................................................ 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CATCGTGCAGAAGTTTGAG............................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................AGCGTGCAGAAGTTTGAGTGTCC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCATGCAGAAGTTTTATTGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CGTTGTGCAGAAGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................AGCGTGCAGAGGTTTGAGTGTCC.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTTAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................ATAGTGCAGAAGTTTGAGTGTCCT......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................TTAAATTTCTGAACGGTAGAGC................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................ATCGTGCAGAAGCTTGAGTGTC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATTGTGCAGAAGTTTGAGTGAC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................ATTCAATTTCTGAACGGTAGA................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCGGGCAGAAGTTTGAGCG............................................................................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................CCATTCAATTTCTGAACGGTAGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GATCGTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CATCCTGCAGAAGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CCATCGTGCAGAAGTTTGAGTGT............................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CATCGTGCAGAAGTTTCAGTGAC........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AACAAACGATATCCGCCCATTTTATTCATTTCATTTGTCGATTAGTTGAGGTAGCACGTCTTCAAACTCACAGGACACACAACGGATTAGCGTAAGTTAAAGACTTGCCATCTCTACCATGCGAATCTTTGTTGGATTTTACTCATATATATTTGATACCAGTT

************************************..(((..((((.(((.(((((.((((((((.((((((..................)))))))))))))).))))).))).))))..)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V052

head
............................................................................................................GATCACTAGCATGCGAATC..................................... 19 3 9 0.11 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3L:3844720-3844883 + dya_46 confident TTGTT-TG-C----------TATA---------------------GGCGG-GTAAAATAAG---TAAAG----------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATG---------------------AGT-----A-----------------------------------TATA-TAAAC------TATG--------------------------GTCAA
droEre2 scaffold_4784:5981963-5982131 + der_1541 TTGTG-TG-C----------TATA---------------------ATTGG-GTAAAATAAG---AAGGAAT-----A--CACTTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCA---------------------AGT-----A---------------------------------------T-TAAT------TATG--------------------------GTCAA
droSec2 scaffold_2:3291315-3291494 + TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAATAAA-----C--ACTTTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAA---------------------ATT-----G---------------------------------------T-TACT------TATATATGCATATAAAACT-------------TGA
droSim2 3l:3195998-3196193 + dsi-mir-955 Known_mirbase TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAAAGAA-----C--TCTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAA---------------------ATT-----A---------------------------------------T-TACG------TATATATGTATATAAAACTTAAAATATATGGTAAT
dm3 chr3L:3299012-3299198 + dme-mir-955 Known_mirbase TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAAGGAA-----C--ACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACA---------------------ATT-----T---------------------------------------T-ATCT------TATAGTTG-------AACTTAAAATA--AAGTAAC
droEug1 scf7180000409466:1024684-1024848 + TTTTT-TG-G----GAT---TGTA---------------------GTTGG-GATA----------------------TTTTATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAAACTTTA-----------------------------------------------------------GTTAAGAA----------------------------------C
droBia1 scf7180000302428:2658370-2658553 + ATTTT-TG-C----------CTAA---------------------GGTGG-GTAGAATAATAATTACAGGATTTGC-TTTTCGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACA---------------------TTAAAAAC---------------------------------------ATTAACT------TATT--------------------------TTTAA
droTak1 scf7180000415378:64799-64962 - TGATC-TT-T----------------------------GCGTTAAGGTGG-GTAGAATAAT---TACAGGGTAT-T-TTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAA---------------------ATT-----C-------------------------------------------------------------------------------------C
droEle1 scf7180000491249:1960482-1960648 - TTGTT-TG-A----------CTTA---------------------GGTGG-GTAAAATTATTG-TGGAAGG-----T--ATTTGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATC---------------------AAAATTAC---------------------------------------A--------TAAA----------------------------------C
droRho1 scf7180000757703:624-809 - TTGTT-TG-A----------TTTA---------------------GATGG-GTAAAATTAT---TATTTAA-----A--AATTTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATCTATTCGAAATTTAGATTACCTAAATGAC---------------------------------------A--------AAAA----------------------------------A
droFic1 scf7180000454105:1620284-1620464 + TATTT-TT-G----------CTTG---------------------AGTGG-GTGAAGCAA-------------------CCTTTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATATACACTAAA----------------------------------------------------------------T------GCTATTTG-------AGCAGGAACTG--TGATCTC
droKik1 scf7180000302391:414318-414483 + TTGTT-TG-C----------TTTG---------------------TGTAG-CTAAAATTGA------AT-T-----C--GACATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTATATGCTAAATTT-----------------------------------------------------------------------T--------------------------AATAT
droAna3 scaffold_13337:7606403-7606552 + dan_53 confident TTTTT-AATT---TTCC---TGA-------------------------GG-GTGA------------AGGA-----T--GTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTTA-ACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG---------------------AAA-----A--------------------------------------------------------------------CAT--------------A
droBip1 scf7180000395543:273552-273699 + TTGTG-T-------------TGAA---------------------GGTGA-----------------AGGC------TGTTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT----TTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAGAAAACT----------------------------------------------------------------------AGAA----------------------------------G
dp5 XR_group8:3252997-3253042 - TCTGGGTG-------------------------------------GTTGGG-----------------------------------------------------GTCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_65:53567-53611 - CTGGT-TG-G----------TTGG---------------------GG----------------------------------------------------------TCCTGCAGGAGTTCGAGGATCCTGG---GTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:10215705-10215851 + dwi_58 confident ATTTT-CA-AAAAACATAATA-TTATTCAAATACTTTTGCGTT---------------------------------------------AAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA-----------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12758:855564-855697 - dvi-mir-955 Known_mirbase TA---------------------------------------------------AAGACAGG---TATGTAT-----G--GATCTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTA---------------------A----------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:1909558-1909762 - dmo_71 confident GTATG-TA-TCGATTCTTATT-TGACTCGAAT-------------------CTCAGGTAT------------------CCAATA----TGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTTG-GCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACT-G---------------------AAA-----GCGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATA-GAAAT------AGTT--------------------------TTCAA
droGri2 scaffold_15110:657035-657171 + dgr_27 candidate-rescued GTTTG-TT-T---TTCT---TGT-------------------------AG-ATGAAATGGA---TTT-------------AA---TA-AAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAA----------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TTGTT-TG-C----------TATA---------------------GGCGG-GTAAAATAAG---TAAAG----------------TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATG---------------------AGT-----A-----------------------------------TATA-TAAAC------TATG--------------------------GTCAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTC..............................................................................................................................................................................................2311520.0015206816121120604150000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGT...............................................................................................................................................................................................221151.0015127213416812330000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGA..................................................................................................................................................22135.0035033020000000
........................................................................................................ATCGTGCAGAAGTTTGAGTGTCC.............................................................................................................................................................................................23130.0030002910000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTCT.............................................................................................................................................................................................24129.00291221100130000
........................................................................................................ATCGTGCAGAAGTTTGAGTGTC..............................................................................................................................................................................................22122.0022121540000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGC...............................................................................................................................................................................................22118.0018401200020000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTCC.............................................................................................................................................................................................24113.0013101100010000
.......................................................................................................CATCGTGCAGAAGTTTGAGTG................................................................................................................................................................................................2119.00902010150000
........................................................................................................ATCGTGCAGAAGTTTGAGTGTCT.............................................................................................................................................................................................2315.00531100000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGT..................................................................................................................................................2215.00500500000000
.....................................................................................................................................................ATTCAATTTCTGAACGGTAGAGT................................................................................................................................................2314.00420200000000
.....................................................................................TAAACAGCTAATCAACTCC....................................................................................................................................................................................................................1914.00400310000000
.......................................................................................................CATCGTGCAGAAGTTTGAGT.................................................................................................................................................................................................2013.00301000020000
...........................................................................................................GTGCAGAAGTTTGAGTGTC..............................................................................................................................................................................................1913.00300300000000
......................................................................................................CCATCGTGCAGAAGTTTGAGTGTC..............................................................................................................................................................................................2413.00300300000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTT..............................................................................................................................................................................................2313.00300100020000
.........................................................................................................TCGTGCAGAAGTTTGAGTGTCCTG...........................................................................................................................................................................................2412.00200110000000
....................................................................G----------------TAAACAGCTAATCAACTC.....................................................................................................................................................................................................................1912.00200200000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGG...............................................................................................................................................................................................2212.00220000000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTG..............................................................................................................................................................................................2312.00200110000000
........................................................................................................ATCGTGCAGAAGTTTGAGTGTCCT............................................................................................................................................................................................2412.00200200000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGA...............................................................................................................................................................................................2211.00100000010000
.......................................................................................................CATCGTGCAGAAGTTTGAGA.................................................................................................................................................................................................2011.00100000100000
.........................................................................................................TCGTGCAGAAGTTTGAGTGTCCC............................................................................................................................................................................................2311.00100100000000
.......................................................................................................CATCGTGCAGAAGTTTGAGC.................................................................................................................................................................................................2011.00100100000000
........................................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG...........................................................................................................................................................................................2511.00100010000000
.....................................................................................TAAACAGCTAATCAACTC.....................................................................................................................................................................................................................1811.00100100000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTGTCA.............................................................................................................................................................................................2411.00100010000000
........................................................................................................................................................CAATTTCTGAACGGTAGT..................................................................................................................................................1811.00100100000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGC..................................................................................................................................................2211.00100100000000
......................................................................................................................................................TTCAATTTCTGAACGGTAGAGT................................................................................................................................................2211.00100100000000
.........................................................................................................TCGTGCAGAAGTTTGAGTGT...............................................................................................................................................................................................2011.00100100000000
.......................................................................................................CATCGTGCAGAAGTTTGAGTT................................................................................................................................................................................................2111.00100000010000
.......................................................................................................CATCGTGCAGAAGTTTGAG..................................................................................................................................................................................................1911.00100100000000
.....................................................................................................................................................ATTCAATTTCTGAACGGTAGA..................................................................................................................................................2111.00100100000000
......................................................................................................CCATCGTGCAGAAGTTTGAGTGT...............................................................................................................................................................................................2311.00100010000000
droEre2
TTGTG-TG-C----------TATA---------------------ATTGG-GTAAAATAAG---AAGGAAT-----A--CACTTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCA---------------------AGT-----A---------------------------------------T-TAAT------TATG--------------------------GTCAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................CATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................221532.00532401218571852146
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................231411.0041112100122839310
.......................................................................................................CATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................211293.00293172941731510
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................24139.003913168200
.......................................................................................................CATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................20135.0035401215130
....................................................................................................................................................CATTCAATTTCTGAACGGTAGA..................................................................................................................................................22114.00144502300
........................................................................................................ATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................21113.00132100730
........................................................................................................ATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................22110.00101200610
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2319.0090402030
.......................................................................................................CATCGTGCAGAGGTTTGAG..................................................................................................................................................................................................1918.0080100520
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................2315.0051001210
.......................................................................................................CATCGTGCAGAGGTTTGAGTGA...............................................................................................................................................................................................2214.0040000220
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTG..............................................................................................................................................................................................2312.0020001010
.......................................................................................................CATCGTGCAGAGGTTTGAGTGC...............................................................................................................................................................................................2212.0020200000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCA.............................................................................................................................................................................................2412.0020001010
.........................................................................................................TCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2212.0022000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTT................................................................................................................................................................................................2112.0021000010
....................................................................................................................................................CATTCAATTTCTGAACGGTAGT..................................................................................................................................................2211.0010000100
.......................................................................................................CATCGTGCAGAGGTTTGAGTC................................................................................................................................................................................................2111.0011000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCTG............................................................................................................................................................................................2511.0010001000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA...........................................................................................................................................................................................2611.0010000010
.......................................................................................................CATCGTGCAGAGGTTTGAGTA................................................................................................................................................................................................2111.0010000100
....................................................................................................................................................CATTCAATTTCTGAACGGTAGAA.................................................................................................................................................2311.0011000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTA..............................................................................................................................................................................................2311.0011000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCTT............................................................................................................................................................................................2411.0010000010
........................................................................................................ATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................2011.0010000010
........................................................................................................ATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................1911.0010001000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGG...............................................................................................................................................................................................2211.0010001000
.....................................................................................TGTCCAGCTAATCAACTCC....................................................................................................................................................................................................................1911.0010100000
droSec2
TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAATAAA-----C--ACTTTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAA---------------------ATT-----G---------------------------------------T-TACT------TATATATGCATATAAAACT-------------TGASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droSim2
TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAAAGAA-----C--TCTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAA---------------------ATT-----A---------------------------------------T-TACG------TATATATGTATATAAAACTTAAAATATATGGTAATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................231882.008825043613900513339525113
.......................................................................................................CATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................221171.00171204100126131158413200
........................................................................................................ATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................221162.0016210124003000212910010
....................................................................................................................................................CATTCAATTTCTGCACGGTAGT..................................................................................................................................................221110.00110518500020670400000
.......................................................................................................CATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................21188.00883013022120126001100
.....................................................................................TGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................18164.0064006400000000000000
....................................................................................................................................................CATTCAATTTCTGCACGG......................................................................................................................................................18151.0051005000100000000000
....................................................................................................................................................CATTCAATTTCTGCACGGTAGA..................................................................................................................................................22149.00490014000229501700000
....................................................................................................................................................CATTCAATTTCTGCACGGTAG...................................................................................................................................................21137.00370014001123151000000
....................................................................................TTGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................19133.0033003200000000100000
........................................................................................................ATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................21128.002820800024124401000
.....................................................................................TGGCCAGCTAATCAACTCC....................................................................................................................................................................................................................19117.001700800100000800000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................23114.001410501100000600000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGG...............................................................................................................................................................................................22113.0013201100000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................20113.001300000141211300000
...................................................................................TTTGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................20112.0012001200000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAG..................................................................................................................................................................................................19111.001120602001000000000
....................................................................................................................................................CATTCAATTTCTGCACGGTAGG..................................................................................................................................................2218.00810600000000100000
.......................................................................................................CATCGTGCAGAGGTTTGA...................................................................................................................................................................................................1816.00600002400000000000
..................................................................................TTTTGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................2116.00600600000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG...........................................................................................................................................................................................2516.00600400000000200000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2315.00500400000000100000
....................................................................................TTGGCCAGCTAATCAACTCC....................................................................................................................................................................................................................2015.00500500000000000000
....................................................................................................................................................CATTCAATTTCTGCACGGTAGC..................................................................................................................................................2215.00500400000010000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2415.00500300000000200000
....................................................................................................................................................CATTCAATTTCTGCACGGTAGTT.................................................................................................................................................2314.00400100010110000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGA...............................................................................................................................................................................................2214.00400000022000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT............................................................................................................................................................................................2413.00300200000000100000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGC...............................................................................................................................................................................................2213.00300300000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................2413.00300100100010000000
........................................................................................................ATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................1913.00300000000003000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTG..............................................................................................................................................................................................2312.00200000000000200000
...................................................................................TTTGGCCAGCTAATCAACTCC....................................................................................................................................................................................................................2112.00200200000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................2212.00200000000010001000
.........................................................................................................TCGTGCAGAGGTTTGAGTGTCCT............................................................................................................................................................................................2312.00200200000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................2012.00210000100000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCA.............................................................................................................................................................................................2312.00200100000100000000
....................................................................................................................................................CATTCAATTTCTGCACGGTA....................................................................................................................................................2011.00100000000001000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGC...............................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................2311.00100000000000100000
.......................................................................................................CATCGTGCAGAGGTTTGT...................................................................................................................................................................................................1811.00110000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGA.................................................................................................................................................................................................2011.00100000001000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGG...............................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................CATCGTGCAGAGGTTTGC...................................................................................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................ATTCAATTTCTGCACGGTAGA..................................................................................................................................................2111.00100000000000100000
.........................................................................................................TCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................2211.00100100000000000000
...........................................................................................................GTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................1911.00100000000001000000
...........................................................................................................GTGCAGAGGTTTGAGT.................................................................................................................................................................................................1611.00100000000001000000
.....................................................................................TGGCCAGCTAATCAACTCCC...................................................................................................................................................................................................................2011.00100000000000100000
....................................................................................................................................................CATTCAATTTCTGCACGGTAGTA.................................................................................................................................................2311.00100000000010000000
......................................................................A-----C--TCTTTTTGGCCAGCT..............................................................................................................................................................................................................................1730.33100000000001000000
dm3
TTGTT-TG-A----------TGTA---------------------GGTGGGGTAAAATAGG---TAAGGAA-----C--ACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACA---------------------ATT-----T---------------------------------------T-ATCT------TATAGTTG-------AACTTAAAATA--AAGTAACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................2311904.0019040000010016000006000000000001000000003003004212203112200000000000000000000000000000042000559630142171092123200000030128060000000000000000000000000103411153441402000000000002004410080013020001006213390011729000001200000003012843380081011002020000027112711000001001002833503500000004100202111011001011143310910504723200299012140217153410157411065116501571104770
.......................................................................................................CATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................2211634.001634000001000300000000001014000000000000302200231031110450004300000000000000000000000000000011531052222221188100000011015001020001170100000000000000200003431454021000000000003202002124020800000013590100301352000000400000700137137173031123538002000000015596001000081030001018000020000111001712632633111020001236137118032312271362214060200009200220009200130109396110001020
.......................................................................................................CATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................211579.00579000000000100000000000002000100000000200110100100200120001100000000000000000000000000000000020010200050000000000000000100010000000000000000001100010112310000000000000020002101020000000000030110001081000000000000000001257614002913110000000051240001000510100140140000000000000001501203021100041442253870027613901911000351110001000102014729104000610
.......................................................................................................CATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................201175.00175000000000000000000000001000000000000000000001000000110000100000000000000000000000000000010001010100000000000000000001000000100000000000000000000101008100000000000000010100000000000000000111000000040000000000000000102064004501000000000055000000000000000000010000000000001601030000000232102520025446061000065000000100000112110000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGA..................................................................................................................................................22185.008500000000000000000000000000000000000000000200100000130000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000100000000000000010000000010000000000011000001000000000000000000035100119010000000000915000000000000000000000000000200000101001000000000001600000002000001000000000000001000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAG..................................................................................................................................................................................................19162.0062000000000000000000000000000000101000000000000010000100000000000000000000000000000000000000000001000000000000000000000000010001000000000000000000000003000000000000000110010000100020000000000100000000000000000000000181100010000000000000000000000000000000000000000000000200102010000003420021000001003200003000000100000021200000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................24142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000030000101000000000003000000000001000001000000000000000000000000000001000310000001002000000000000200000332361000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000010000000000010100000000000000003000000000000000000000000000000000000000000000011000610000000000100000000000100000000110000100
....................................................................................................................................................CATTCAATTTCTGAACGGTAG...................................................................................................................................................21121.0021000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000110100020001010000001000000000000000000000000000000021100100000000000000000000000000000000000000000000000011000000000000200000000000000000000000000000000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................21118.0018000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000100000000000000000000000000100000000000000000001100000001000000000000000000000000000000000000000010400000000000000001000000000000001101000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000002100000000000000000000000000000000010200000000000010100010000102000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGA...............................................................................................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000001000000000000110000000010000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTT................................................................................................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000010000000000001000000000000000000000000000000000000000000000000000000000000103000000000000000000010000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000001000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTA..............................................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCA.............................................................................................................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGA...................................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000
...........................................................................................................GTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................TGGCCAGCTAATCAACTCC....................................................................................................................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGG...............................................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000
.....................................................................................TGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTATC............................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAT..................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................GTGCAGAGGTTTGAGTGTA..............................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT............................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
.......................................................................................................CATCGTGCAGAGGTTTGAGG.................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGA.................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTG..............................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGT..................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGAA.................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................TTGGCCAGCTAATCAACTC.....................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CATTCAATTTCTGAACGGT.....................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGAA................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTAT.............................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTAA...............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---.......................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CATTCAATTTCTGAACGGTAGAATC...............................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TTTTT-TG-G----GAT---TGTA---------------------GTTGG-GATA----------------------TTTTATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAAACTTTA-----------------------------------------------------------GTTAAGAA----------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
ATTTT-TG-C----------CTAA---------------------GGTGG-GTAGAATAATAATTACAGGATTTGC-TTTTCGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACA---------------------TTAAAAAC---------------------------------------ATTAACT------TATT--------------------------TTTAASizeHit CountTotal NormTotal
No Reads
droTak1
TGATC-TT-T----------------------------GCGTTAAGGTGG-GTAGAATAAT---TACAGGGTAT-T-TTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAA---------------------ATT-----C-------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
TTGTT-TG-A----------CTTA---------------------GGTGG-GTAAAATTATTG-TGGAAGG-----T--ATTTGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATC---------------------AAAATTAC---------------------------------------A--------TAAA----------------------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
TTGTT-TG-A----------TTTA---------------------GATGG-GTAAAATTAT---TATTTAA-----A--AATTTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATCTATTCGAAATTTAGATTACCTAAATGAC---------------------------------------A--------AAAA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TATTT-TT-G----------CTTG---------------------AGTGG-GTGAAGCAA-------------------CCTTTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATATACACTAAA----------------------------------------------------------------T------GCTATTTG-------AGCAGGAACTG--TGATCTCSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTT-TG-C----------TTTG---------------------TGTAG-CTAAAATTGA------AT-T-----C--GACATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTATATGCTAAATTT-----------------------------------------------------------------------T--------------------------AATATSizeHit CountTotal NormTotal
No Reads
droAna3
TTTTT-AATT---TTCC---TGA-------------------------GG-GTGA------------AGGA-----T--GTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTTA-ACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG---------------------AAA-----A--------------------------------------------------------------------CAT--------------ASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................231158.0015813851382118
.......................................................................................................CATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................221149.0014912133196240
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................24157.0057416621613
.......................................................................................................CATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................21148.004843222116
....................................................................................................................................................CATTCAACCTTTGGACGGTAGA..................................................................................................................................................22133.00337191141
.......................................................................................................CATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................20112.0012210351
.........................................................................................................TCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2218.008700001
......................................................................................................................................................TTCAACCTTTGGACGGTAGAG.................................................................................................................................................2118.008310040
.......................................................................................................CATCGTGCAGAGGTTTGAGTGC...............................................................................................................................................................................................2217.007060100
....................................................................................................................................................CATTCAACCTTTGGACGGTAG...................................................................................................................................................2116.006410100
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTT..............................................................................................................................................................................................2316.006000132
......................................................................................................................................................TTCAACCTTTGGACGGTAGAGT................................................................................................................................................2215.005120110
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.............................................................................................................................................................................................2413.003030000
......................................................................................................CCATCGTGCAGAGGTTTGAGTGT...............................................................................................................................................................................................2313.003100011
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.............................................................................................................................................................................................2313.003000003
......................................................................................................................................................TTCAACCTTTGGACGGTAGAGA................................................................................................................................................2212.002010001
........................................................................................................ATCGTGCAGAGGTTTGAGTG................................................................................................................................................................................................2012.002100010
.....................................................................................................................................................ATTCAACCTTTGGACGGTAGA..................................................................................................................................................2112.002110000
.......................................................................................................CATCGTGCAGAGGTTTGAGTT................................................................................................................................................................................................2112.002001010
.........................................................................................................TCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................2111.001001000
........................................................................................................ATCGTGCAGAGGTTTGAGTGTC..............................................................................................................................................................................................2211.001100000
......................................................................................................................................................TTCAACCTTTGGACGGTAGA..................................................................................................................................................2011.001000100
.......................................................................................................CATCGTGCAGAGGTTTGAG..................................................................................................................................................................................................1911.001000010
.......................................................................................................................................................TCAACCTTTGGACGGTAGAG.................................................................................................................................................2011.001100000
..................................................................................................................................................CGCATTCAACCTTTGGACGGTAGTT.................................................................................................................................................2511.001010000
.....................................................................................................................................................ATTCAACCTTTGGACGGTAGAGT................................................................................................................................................2311.001010000
..................................................................................................................................................CGCATTCAACCTTTGGACGGTAG...................................................................................................................................................2311.001001000
......................................................................................................CCATCGTGCAGAGGTTTGAGT.................................................................................................................................................................................................2111.001010000
.......................................................................................................CATCGTGCAGAGGTTTGAGTA................................................................................................................................................................................................2111.001000010
....................................................................................................................................................CATTCAACCTTTGGACGGTAGT..................................................................................................................................................2211.001010000
.................................................................................TTTTTGAGAAGCTCATCAGCTC.....................................................................................................................................................................................................................2211.001010000
.......................................................................................................CATCGTGCAGAGGTTTGAT..................................................................................................................................................................................................1911.001000001
........................................................................................................ATCGTGCAGAGGTTTGAGTGTCA.............................................................................................................................................................................................2311.001000010
.....................................................................................................................................................ATTCAACCTTTGGACGGTAGAG.................................................................................................................................................2211.001100000
.......................................................................................................CATCGTGCAGAGGTTTGAGTGG...............................................................................................................................................................................................2211.001000010
.......................................................................................................CATCGTGCAGAGGTTTGAGTGTCTA............................................................................................................................................................................................2511.001001000
......................................................................................................................................................TTCAACCTTTGGACGGTAGTTT................................................................................................................................................2211.001100000
....................................................................................................................................................CATTCAACCTTTGGACGGTTTT..................................................................................................................................................2230.331100000
droBip1
TTGTG-T-------------TGAA---------------------GGTGA-----------------AGGC------TGTTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT----TTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAGAAAACT----------------------------------------------------------------------AGAA----------------------------------GSizeHit CountTotal NormTotal
No Reads
dp5
TCTGGGTG-------------------------------------GTTGGG-----------------------------------------------------GTCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
CTGGT-TG-G----------TTGG---------------------GG----------------------------------------------------------TCCTGCAGGAGTTCGAGGATCCTGG---GTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
ATTTT-CA-AAAAACATAATA-TTATTCAAATACTTTTGCGTT---------------------------------------------AAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTC..............................................................................................................................................................................................231674.0067471265311
.......................................................................................................CATCGTGCTTAGGTTTGAGTGT...............................................................................................................................................................................................221119.0011932326814
.......................................................................................................CATCGTGCTTAGGTTTGAGTG................................................................................................................................................................................................21142.00421011282
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTCT.............................................................................................................................................................................................24130.00301510104
....................................................................................................................................................CATTCAACCTTGGAGCGATAGA..................................................................................................................................................2219.00900090
........................................................................................................ATCGTGCTTAGGTTTGAGTGTC..............................................................................................................................................................................................2215.00500050
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTCC.............................................................................................................................................................................................2414.00420020
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTCA.............................................................................................................................................................................................2413.00300021
.......................................................................................................CATCGTGCTTAGGTTTGAGTGC...............................................................................................................................................................................................2213.00330000
........................................................................................................ATCGTGCTTAGGTTTGAGTGT...............................................................................................................................................................................................2112.00200011
...........................................................................................................GTGCTTAGGTTTGAGTGTC..............................................................................................................................................................................................1912.00200020
.......................................................................................................CATCGTGCTTAGGTTTGAGT.................................................................................................................................................................................................2012.00200020
.......................................................................................................CATCGTGCTTAGGTTTGAGTGG...............................................................................................................................................................................................2212.00220000
........................................................................................................ATCGTGCTTAGGTTTGAGTGTCT.............................................................................................................................................................................................2312.00200011
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTCAA............................................................................................................................................................................................2512.00200020
...........................................................................................................GTGCTTAGGTTTGAGTGT...............................................................................................................................................................................................1811.00100001
....................................................................................................................................................CATTCAACCTTGGAGCGATAG...................................................................................................................................................2111.00100010
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTT..............................................................................................................................................................................................2311.00100010
.................................................................................................................................................TGGCATTCAACCTTGGAGCGATA....................................................................................................................................................2311.00100010
.......................................................................................................CATCGTGCTTAGGTTTGAG..................................................................................................................................................................................................1911.00100100
...............................................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA.................................................................................................................................................2711.00100010
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTA..............................................................................................................................................................................................2311.00101000
......................................................................................................CCATCGTGCTTAGGTTTGAGTG................................................................................................................................................................................................2211.00100010
.....................................................................................................................................................ATTCAACCTTGGAGCGATAGA..................................................................................................................................................2111.00101000
......................................................................................................CCATCGTGCTTAGGTTTGAGTGTC..............................................................................................................................................................................................2411.00100010
.......................................................................................................CATCGTGCTTAGGTTTGAGTGTCG.............................................................................................................................................................................................2411.00110000
droVir3
TA---------------------------------------------------AAGACAGG---TATGTAT-----G--GATCTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTA---------------------A----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................CATCGTGCACAGGTTTGAGTGT...............................................................................................................................................................................................221108.001080013232011000041322141102101215158020000330000000000000000001135500000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-.............................................................................................................................................................................................23190.00901011310100000001003200020000020110000010000000000000000000013440100000000100000001
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-T............................................................................................................................................................................................24117.00170011000000000021032102200000100000000000000000000000000000000100000000000000000
....................................................................................................................................................CATTCAACCTTTGAACGGTAGA..................................................................................................................................................22117.00170016000000000000010001000000000100000000000000000000000000411000000000001000000
.......................................................................................................CATCGTGCACAGGTTTGAGTG................................................................................................................................................................................................2117.0070000000000000010000200000000000100000001000000000000000000000100000000010000000
.......................................................................................................CATCGTGCACAGGTTTGAGT.................................................................................................................................................................................................2015.0050000000000000010000001100000100100000000000000000000000000000000000000000000000
....................................................................................................................................................CATTCAACCTTTGAACGG......................................................................................................................................................1814.0040000000000000000000000000000000000000000000100000000000000300000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAG..................................................................................................................................................................................................1914.0040000000001000000000000000001010100000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-C............................................................................................................................................................................................2412.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CCATCGTGCACAGGTTTGAGTGT...............................................................................................................................................................................................2312.0020000000000000002000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTC-.............................................................................................................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTCAACCTTTGAACGGTAGAG.................................................................................................................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................GTGCACAGGTTTGAGTGT...............................................................................................................................................................................................1811.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-CT...........................................................................................................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-AT...........................................................................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-A............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-AA...........................................................................................................................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT...........................................................................................................................................................................................2511.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
...................................................................................TCTCATCAGTTAGCTAGCTC.....................................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGA...................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................ATTCAACCTTTGAACGGTAGA..................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA..................................................................................................................................................3911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
....................................................................................................................................................CATTCAACCTTTGAACGGTAG...................................................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CATCGTGCACAGGTTTGAGTGA...............................................................................................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................TTCAACCTTTGAACGGTAGA..................................................................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................TTCAACCTTTGAACGGTAGAGA................................................................................................................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
GTATG-TA-TCGATTCTTATT-TGACTCGAAT-------------------CTCAGGTAT------------------CCAATA----TGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTTG-GCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACT-G---------------------AAA-----GCGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATA-GAAAT------AGTT--------------------------TTCAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-.............................................................................................................................................................................................231467.0046781760225922
....................................................................................................................................................CATTCAGCCTTTGAACGGTAGA..................................................................................................................................................221128.00128414001064
.......................................................................................................CATCGTGCACAGGTTTGAGTGT...............................................................................................................................................................................................22187.008712115121037
.......................................................................................................CATCGTGCACAGGTTTGAGTGTC-.............................................................................................................................................................................................23142.00420000420
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-T............................................................................................................................................................................................24113.0013121306
................................................................................AATA----TGGGTTAGCGAGCTC.....................................................................................................................................................................................................................1918.008010070
.......................................................................................................CATCGTGCACAGGTTTGAGTGC...............................................................................................................................................................................................2217.007000070
.......................................................................................................CATCGTGCACAGGTTTGAGTG................................................................................................................................................................................................2115.005310010
.......................................................................................................CATCGTGCACAGGTTTGAGT.................................................................................................................................................................................................2013.003110001
.......................................................................................................CATCGTGCACAGGTTTGAGTGAC-.............................................................................................................................................................................................2313.003000030
....................................................................................................................................................CATTCAGCCTTTGAACGGTAG...................................................................................................................................................2112.002100010
...............................................................................CAATA----TGGGTTAGCGAGCTC.....................................................................................................................................................................................................................2012.002010010
......................................................................................................CCATCGTGCACAGGTTTGAGTGTT-.............................................................................................................................................................................................2411.001000010
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G......................................................................................................................................................................................2711.001010000
.......................................................................................................CATCGTGCACAGGTTTGAG..................................................................................................................................................................................................1911.001000001
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-TC...........................................................................................................................................................................................2511.001100000
.....................................................................................................................................................ATTCAGCCTTTGAACGGTAGA..................................................................................................................................................2111.001000010
.......................................................................................................CATCGTGCACAGGTTTGAGTGTA-.............................................................................................................................................................................................2311.001000010
........................................................................................................ATCGTGCACAGGTTTGAGTGT...............................................................................................................................................................................................2111.001100000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T......................................................................................................................................................................................2711.001010000
.................................................................................ATA----TGGGTTAGCGAGCTC.....................................................................................................................................................................................................................1811.001000010
....................................................................................................................................................CATTCAGCCTTTGAACGGTAGAA.................................................................................................................................................2311.001000010
.....................................................................................................................................................ATTCAGCCTTTGAACGGTAGG..................................................................................................................................................2111.001000010
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT...........................................................................................................................................................................................2511.001100000
.......................................................................................................CATCGTGCACAGGTTTGAGTGTT-C............................................................................................................................................................................................2411.001010000
.....................................................................................................................................................ATTCAGCCTTTGAACGGTAGAA.................................................................................................................................................2211.001000010
..............................................................................CCAATA----TGGGTTAGCGAGCTC.....................................................................................................................................................................................................................2111.001000010
........................................................................................................ATCGTGCACAGGTTTGAGTGTT-.............................................................................................................................................................................................2211.001000010
...........................................................T------------------CCAATA----TGGGTTAGCGAGCTC.....................................................................................................................................................................................................................2211.001000010
......................................................................................................CCATCGTGCACAGGTTTGAGTGTC-.............................................................................................................................................................................................2411.001000010
...........................................................................................................GTGCACAGGTTTGAGTGTT-.............................................................................................................................................................................................1911.001010000
droGri2
GTTTG-TT-T---TTCT---TGT-------------------------AG-ATGAAATGGA---TTT-------------AA---TA-AAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAA----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................CATCGTGCACGGGTTTGAGTGT...............................................................................................................................................................................................22161.00612041
.......................................................................................................CATCGTGCACGGGTTTGAGTG................................................................................................................................................................................................21155.00551144
.......................................................................................................CATCGTGCACGGGTTTGAGT.................................................................................................................................................................................................20120.0020416
.......................................................................................................CATCGTGCACGGGTTTGAGTGTC-.............................................................................................................................................................................................2316.00615
........................................................................................................ATCGTGCACGGGTTTGAGTG................................................................................................................................................................................................2013.00321
.......................................................................................................CATCGTGCACGGGTTTGAGTGA...............................................................................................................................................................................................2212.00202
........................................................................................................ATCGTGCACGGGTTTGAGTGT...............................................................................................................................................................................................2112.00220
.......................................................................................................CATCGTGCACGGGTTTGAGTGTC-T............................................................................................................................................................................................2412.00211
.......................................................................................................CATCGTGCACGGGTTTGAGTGTT-.............................................................................................................................................................................................2311.00110
....................................................................................................................................................CATTCAGCCCCTGGACGCTAGA..................................................................................................................................................2211.00110
.......................................................................................................CATCGTGCACGGGTTTGAGTGTC-A............................................................................................................................................................................................2411.00101
........................................................................................................ATCGTGCACGGGTTTGAGTGTC-.............................................................................................................................................................................................2211.00101
..........................................................................................................CGTGCACGGGTTTGAGTGT...............................................................................................................................................................................................1911.00110
......................................................................................................CCATCGTGCACGGGTTTGAGT.................................................................................................................................................................................................2111.00110

Generated: 10/20/2015 at 06:49 PM