ID:

dya_454

 Coordinate:

2R:4603733-4603883 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -19.3 -19.3

Flybase annnotation

CDS [Dyak\GE12746-cds]; exon [dyak_GLEANR_12974:1]; intron [Dyak\GE12746-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACGCCAATGTCGCAGCAGCAGAGGAAATTGTGCCCAAGGACGCGGCAACGTAAGTAAAAAACTGGAAAAACTCCAGTCGCTCTAAAACCAGCAATGAATGTGCGTCCAAGTGACTTCAAAATTGTAGCTATGTTTATGCACAGTATTGTGTATAGACATATGTAAAAATCTGGCTAAATATTTATATTGTATGTGAAGTTGCTGAACATAAATGTTTCGTAAATATTATTCAATTTATTCTAATGTAATT
************************************************************************************************((((((....(((.((.............((..((((((((((((((....))))))))))))))..))...)).)))....))))))...**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
 M026
head
 V046
embryo
 V052
head
 V058
head
......................................................................................................................................................................................TTATATTGTCCGTGAAGATGC................................................ 21 3 2 9.50 19 3 15 0 1 0 0 0
.......................................................................................................................................................................................TATATTGTCCGTGAAGATGC................................................ 20 3 5 5.60 28 2 25 0 1 0 0 0
.......................................................................................................................................................................................TATATTGTATGTGAAGTTGCTGA............................................. 23 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................................................................................................................GTGAAGTTGCTGAACATAAATGT................................... 23 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................GAATGTGCGTCCAAGTGACTTCAAAA................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................AATGAATGTGCGTCCAAGTGACT....................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................................ATTTATATTGTATGTGAAGTTGCTG.............................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................ATGTAAAAATCTGGCTAAATATTTATA................................................................ 27 0 1 2.00 2 0 0 0 2 0 0 0
..........................................................................................................................................................................................ATTGTATGTGAAGTTGCTGAA............................................ 21 0 1 2.00 2 2 0 0 0 0 0 0
..................GCAGAGGCAATTGTGCCCAAGGACG................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................ATATTGTATGTGAAGTTGCTGA............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................GCAATGAATGTGCGTCCAAGTGACTTCA.................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
................CAGCAGAGGAAATTGTGCCCAAGGACG................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................TTGTATGTGAAGTTGCTGAAC........................................... 21 0 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................TATATTGTATGTGAAGTTGCT............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................CAGAGGAAATTGTGCCCAAGGA.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
.................AGCAGAGGAAATTGTGCCCAAG.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................CTAAATATTTATATTGTATGTGAAGTTGCT............................................... 30 0 1 1.00 1 1 0 0 0 0 0 0
.......ATGTCGCAGCAGCAGAGGAAATTGTG.......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................CTAAAACCAGCAATGAATGTGCGTCCA.............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................TTTATATTGTATGTGAAGTTGCT............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................CCAGCAATGAATGTGCGTCCAAGTGACT....................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................GAATGTGCGTCCAAGTGACTTCA.................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........GTCGCAGCAGCAGAGGAAATTGTGCCC....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
....CCAATGTCGCAGCAGCAGAGGAAGTTG............................................................................................................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................CAGTATTGTGTATAGACAT........................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................AATGAATGTGCGTCCAAGTGACTTCAAAAT................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................GTGAAGTTGCTGAACATAAAT..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................ATTTATATTGTATGTGAAGTTGCTGA............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................ATGAATGTGCGTCCAAGTGACT....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.ACGCCAATGTCGCAGCAGCAGAGGA................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................ATATTGTATGTGAATTTGCTGAA............................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................CTATATTGTATGTGAAGTTGCTGAA............................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
................CAGCAGAGGACATTGTGCCCAAGC................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................AGCAATGAATGTGCGTCCAAG............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................GAGGAAATTGTGCCCAAGGACGCGGC............................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................ATTTATATTGTATGTGAAGTTG................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................CAATGAATGTGCGTCCAAGTGA......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TATTTATATTGTATGTGAAGTTGCT............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................AATTGTGCCCAAGGACGCGGC............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................TGCTGAACATAAATGTTTCGTAA............................ 23 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................CCAAGTGACTTCAAAATTGTAGCTATG...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................TTTATATTGTCCGTGAAGATGC................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0
...........CGCAGCAGCAGAGGAAATTGTGCCC....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
.........................AAATTGTGCCCAAGGACGCGGC............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
....................AGAGGAAATTGTGCCCAAGGACGC............................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................ACCAGCAATGAATGTGCGTCCAAGTGA......................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................GAAGTTGCTGAACATAAAT..................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................ATATTGTATGTGAAGTTGCTGAAC........................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GTGCGTCCAAGTGACTTCAAAATTGTAGCT......................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................CTAAAACCAGCAATGAATGTGC................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................AATTGTGCCCAAGGACGCGG............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................................................................................ATATTGTCTGTGAAGATGC................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................................................................................ATATTGTCCGTGAAGATGC................................................ 19 3 20 0.30 6 2 0 0 0 0 1 3
......................................................................................................................................................................................TTATATTGTCCGTGAAGATG................................................. 20 3 8 0.25 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................TATATTGTCCGTGAAGATG................................................. 19 3 20 0.20 4 1 3 0 0 0 0 0
.....................................................................AACTCCAATCGCTCTATCAC.................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 1
........................................................................................................................................................................................ATATTGTCTGTGAAGATGCG............................................... 20 3 12 0.17 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................TATATTACATGTGAAGATGC................................................ 20 3 13 0.08 1 0 1 0 0 0 0 0

Anti-sense strand reads

TTGCGGTTACAGCGTCGTCGTCTCCTTTAACACGGGTTCCTGCGCCGTTGCATTCATTTTTTGACCTTTTTGAGGTCAGCGAGATTTTGGTCGTTACTTACACGCAGGTTCACTGAAGTTTTAACATCGATACAAATACGTGTCATAACACATATCTGTATACATTTTTAGACCGATTTATAAATATAACATACACTTCAACGACTTGTATTTACAAAGCATTTATAATAAGTTAAATAAGATTACATTAA
****************************************************************((((((....(((.((.............((..((((((((((((((....))))))))))))))..))...)).)))....))))))...************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528802
follicle cells		 M043
female body
 M056
embryo
 V120
male body
.TGCGGTTACAGCGTCGTCGTCTCCTTTAA............................................................................................................................................................................................................................. 29 0 1 5.00 5 5 0 0 0
.TGCGGTTCCCGCGTCGTCGTCTCCTT................................................................................................................................................................................................................................ 26 2 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................CACTTCAACGACTTGTATTTA..................................... 21 0 1 1.00 1 0 1 0 0
.TGCGGTTACAGCGTCGTCGTCTCCTT................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
.........................................................................................................AGGTTCACTGAATTTTTAACATCGAT........................................................................................................................ 26 1 1 1.00 1 1 0 0 0
................................ACGGTTCCTGCGCCGTTGCATTCATTTT............................................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0
.............................................................................................................................................................................................CATACACTTCAACGACTTGTATTT...................................... 24 0 1 1.00 1 0 0 1 0
...............................TTGGGTTCCTGCGCCGTTGCATTCAT.................................................................................................................................................................................................. 26 2 1 1.00 1 0 1 0 0
.................................................................CTTTTTGAGGTCAGCGAGATT..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1
...CTGTTACGGCGGCGTCGTCT.................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:4603683-4603933 - dya_454 AACGCCAA------TGTCGCAGC-------------------------------------AGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAA-------------ACTGGA-AAAACTC--CAGTCGCTCTAAAACCAGC-AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAATTGTAGCTATGTTTATGCACA-GTATTGTGTAT--------AGACATA-----TG------TAAAAATCTGGC-TAAATATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------GTTTCGTAAATATTATTCAATTT-----ATTCTAATGTAATT
droEre2 scaffold_4845:19563519-19563784 + GACGCCAA------TGTCGCAGC-------------------------------------AGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGGGA-AAATCTTTACAGTCGCTCTAAAACTAAC-GATA-CTGCC-CGTCTGTGAATATGCTTTC-AAGTGACTTCCAAATTGTAGCTATGTTTATGCCCA-GTAATGT---------------------------------------------TAAATATTG-------CAATTG--------------------------------------------------------TATGTGAAGTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCCAACATTTCGATGAAA----------------TGTGAAA-TCGTTTCGTAAATATTATTCAATTT-----ATTCTAATATAATA
droSec2 scaffold_7:138953-139192 + GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGACAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTT-AAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATAAATAAAAGGCG------GAAAAATCTAGCATAACTACTT-------ATGTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTT-----ATTTAAATTTAATG
droSim2 2l:16057355-16057595 + dsi_15293 GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGACAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATTTAGATAAGGCG------GAAAAATCTGGCATAATTATTT-------ATGTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTT-----ATTCAACTTTAATG
dm3 chr2L:16492011-16492307 + GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGGGA-AAATCTCCACAGTCGCTTTAAAACCAGA-GATAACAGCC-TGTCTGTGAATGTGGTTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATAAGGAAAAGGCG------GAAAAATCTGGCATTATTATTT-------ATGTAGCT---------------------------------------------------------GTAAAGTTCCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A------------------------------------------------------------------------------------------------------CCAAGCATTTTGATATAAAAATTCAATTTAAATTTGCGATATTCGTTTCGAAAATAGT-------------------AATTTAATG
droEug1 scf7180000408961:67556-67912 + GACGTCAA------AGTCGAGGC-------------------------------------GGACGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAA--GCACGC-GATATTCCACAGTCACCTCAGAACTAAA-GATAACAGCT-AACGTGAG-ATGTGCCCTCGAAGTGACCCTCAAACTGTAG-TATGTTCATACCAA-GTTA-AT----T--------T------------------------------------------------------------ACTAAATAATGG--GAA-TAAGTACACTTTATAGCATATGTGTGAATTGTTCGTCAAGTTCCTGTGTAGG----------CAA------CTAAACAAGCTTGGT-TAAAAGCAACCAAATTATTTATAAAAGTTCCTCTGTATCTGTATACAGTTGTTTTTTTTTTAAGAATTTAAATAAGAAATACCACTTGA---------GTATA----------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTGA-------
droBia1 scf7180000301468:622787-623113 + GACGCCAG------CGCCGCTGC-------------------------------------GGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAAAAACAGGC-GAATCCCCACAGTCGCTCTCAAACCAAC-GATAACAGCT---CCCGAAAATGTGCCTTCGAGCTGGCGCTCAAACTGTGCAAATGTTTATGCGAA-GTTA-A-AC----------TTA----------------------------------------------------CAAAAAG-----------GGTGA-AAA-----------------------------------------------AGGAGATAAAAATCGTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------AGAAGTGGTTTTGTGGAGTTAACTTGTGGAAATTTAACACTTATACTGGTCATATGTTGTTCATTAAAGACAAC-------------ATATAT---------------------------------------------------------TTAAAGTTAAAAATAAACTACTT-----ATTCCCCTA-GATT
droTak1 scf7180000415914:182569-182929 + GACGCCAA------CGTCGCAGC-------------------------------------GGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAA------------ACAGGC-GAATCTCTACAGTCGCTCTAAAACCAAC-GATAACAGCA-CACCTGAAAATGTGTC-----------TCTCAAACTGCAGCCATGTTTATAGATA-AAATATCGTAA-------------------------------------------------------------------------------------------------------------------------------------------------AATTATAATAAAAACCAGACAACTTGGGTGTAAAATCCACAAACGTATTTACAAAAATCCCCT-AAA----------------------------------------------------------------------------------------A---------------------------CTTA--GTTTATGCGCAGTTAATTTATAAAAAGTCATCAGCCAAATTT-------GTTTTTGAT--AAGATAAGCAACTGATTACAAAAAAATGTAAAGTTCCAAATCCA---------------------TATTAAATT----AAATTTTTTTTGACAAAAAT-----------------CCC------TT
droEle1 scf7180000490579:861604-861873 - A-CGCCAA------CGTCGCAGC-------------------------------------GGCAGAGGAAATTGTTCCCAAGGACGCTGC-AACGTAAGTACAAAA-------AAA--ACAAGCGGAAATCGTACAATGGCTCCTAAACCGAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAGTGACTCATAAACTGTCGCTGTGTTTATGCGAG-GTTA-CT----T--------G------------------------------------------------------------ATAAAACAGTGT--GCC------ACACTTTCTCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAATAAATACAATGGATCAAAATCTACAGTGCAGTACCTCTGTGTAAAACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGATAGAA-T
droRho1 scf7180000780143:8170-8511 + -ACGCCAA------CGCCGCTGC-------------------------------------GGCTGAGGAAATTGTTCCCAAGGACGCGGC-AACGTAAGTAGAAAA-------AAA-AACACGC-AAAATTCTACAGTTCCTACTAAACCAAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAATGACTCTCAAACTGTCGCTATGTTTATACGAG-CTTA-T-ACTGTTTTACG------------------------AATAATAGTATTCTTAAAGTTGCTATATGTTGCTACATC-----------GGTCA-AAT-----------------------------------------------GACAGTCAAAATTCAATAAAAACCTAAC------CAA-TGT---------------------------------------------------------------------------GAGTTGTATTAGTGAAATATTAATATAAGATAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAATACAATATATCGATGGATATAAACCGGGGAAG--TAATTGCAACC
droFic1 scf7180000454078:426942-427163 + GAAGCTG---------------T-------------------------------------TGCAGAGGAAATTGTTCCCAAGGACGCGGC-AACGTGAGTAGAAAA-------AAA--TCTGGC-GAGTCCCCACAGTTCCTCTCAAACCAAA-GATAACGGTT-CACCTGAAAATGTGCCTGT-GAATGCTTCTAAAACTGTGACAATGTTTATGCGAAAGTTA-TT----TTCTTCGTAGAC--------------------------ACGTTT-------------------------------------------------------------------------------------------------------------------------------TGT-T------------------------------------------------------------------TCAAATAATAAATGCGAGTTCA---------GAACATAATATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1 scf7180000302382:284378-284630 + GATGCCAG------CGATGCTGC-------------------------------------GCCGGAGGAGATTGTGCCCAAGGACGCGGC-CACGTGAGTAACGCGCATATTAAAAGCACAAGT-GCACCAAAGCAGTCGATGTAAAACTGCCAGATAACAGTTATGCCTGAATGTATGTCAATGCAGTTGCTCTGAAACTGTAGGTGTGTTTATGCGAAAG-TTAGTGTTATTTTTAG------------------------TACAAGGACGTTTTTGTGA-------TTATTGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGTTTTCCATAGGGAAACTTATAATATAA--
droAna3 scaffold_12916:16061466-16061528 - GACGTCAAAATGGGCATCACGTC-------------------------------------GGCAGAGGAAATTGTACCCAAGGACGCGGC-AACGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396717:295992-296308 - GGTGCCGC------CGTCGCAGCAGTCCCCCCAACCTGCTGATATTGACGTCAAGCTGATGGCCGAGGAAATCGTACCCAAGGACGCGGC-AACGTAAGTAGACCA-------GGT-TTTATTAAAA---------------------------------------ATCTGAATATTAC--------------------------------ACGAACTTG-GTACTTAGTAC--------TTGGTGGTCTGGTGATTTTAGCAAAATTTAGTACTCCTACAACTGGGAGATAAGGTTT-TTTGCCCAAAAGTGGGCGA-TAA-----------------------------------------------GGG----------CAACACAAACACGCT------GTT-TAC---------------------------------------------------------------------------AAGTGAGGTCATGAAAATAGTAACAAAATATAAATAATTACCAAAAAA---------------------------TAAAACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGTATC
dp5 4_group3:8218838-8218920 + GATG----------------------------------------------------------CGGAGCAGATTGTTCCCAAGGACGCGGA-AACGTAAGTAGAGTT-------GTA----------------CCC---------------------------------------------------AGTGAGTCTAAAACTGTATAAAAGCG-----------------------------------------------------------------------------------------------------TGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:9667685-9667753 + GATG----------------------------------------------------------CGGAGCAGATTGTTCCCAAGGACGCGGGAAACGTAAGTAGAGTT-------GTA---------------CCCCAGTGAGTCTAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:4756445-4756489 + C----CGA----------------------------------------------------TGCGGAGCAAATTGTACCCAAGGATGCAGC-AACGTAAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:12984323-12984370 - GCCCCTGA----------------------------------------------------TGCGGAGCAGATTGTGCCCAAAGACGCGGC-AACGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:7094187-7094284 + GAAGCCGA------------TGA-------------------------------------AATCGAGCAAATTGTGCCCAAAGACACCGC-AACGTAAGTAAAACT-------AAA--GCAACATACATTCATACACACGC--AGAAACGAAC-G-------TA-CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droGri2 scaffold_14978:702998-703041 + GACG----------------------------------------------------------GTGAGCAGATTGTGCCAAAGGACGCGGC-AACGTAAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AACGCCAA------TGTCGCAGC-------------------------------------AGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAA-------------ACTGGA-AAAACTC--CAGTCGCTCTAAAACCAGC-AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAATTGTAGCTATGTTTATGCACA-GTATTGTGTAT--------AGACATA-----TG------TAAAAATCTGGC-TAAATATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------GTTTCGTAAATATTATTCAATTT-----ATTCTAATGTAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................T-------ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................2313.00300000030000
..................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------GT........................................2313.00300000030000
............................................................................................................................................................................GAATGTGCGTCC-AAGTGACTTCAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
..........................................................................................................................................................AAT---------------GAATGTGCGTCC-AAGTGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
......................................................................................................................................................................................................................................................................................ATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................2512.00200000020000
......................................................................................................................................................................................................................................................A-----TG------TAAAAATCTGGC-TAAATATTT-------ATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000000000
...................................................................................................................................................................................................................................................................................................ATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AA....................................................................................................................................................................................................................................................2112.00200000020000
.................................................................................................................................................................................................................................................................................................ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................GC-AAT---------------GAATGTGCGTCC-AAGTGACTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
......................C-------------------------------------AGCAGAGGAAATTGTGCCCAAGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000
....................................................................................................................................................................................................................................................................................................TTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AAC...................................................................................................................................................................................................................................................2111.00100001000000
.........................................................................................................................................................................................................................................................................................T-------ATATTG--------------------------------------------------------TATGTGAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................CAGAGGAAATTGTGCCCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............................................................AGCAGAGGAAATTGTGCCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................C-TAAATATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
.......A------TGTCGCAGC-------------------------------------AGCAGAGGAAATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..............................................................................................................................................CTAAAACCAGC-AAT---------------GAATGTGCGTCC-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................................................................TTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................CCAGC-AAT---------------GAATGTGCGTCC-AAGTGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
............................................................................................................................................................................GAATGTGCGTCC-AAGTGACTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............GTCGCAGC-------------------------------------AGCAGAGGAAATTGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................................................................................................................CA-GTATTGTGTAT--------AGACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------..........................................2111.00100000010000
......................................................................................................................................................................................................................................................................................ATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................2611.00100000010000
...........................................................................................................................................................AT---------------GAATGTGCGTCC-AAGTGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.ACGCCAA------TGTCGCAGC-------------------------------------AGCAGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................AGC-AAT---------------GAATGTGCGTCC-AAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................GAGGAAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................................................................................................................................................................................................................................................................................ATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................C-AAT---------------GAATGTGCGTCC-AAGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................TATTT-------ATATTG--------------------------------------------------------TATGTGAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................AATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................TGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------GTTTCGTAA.................................2311.00101000000000
......................................................................................................................................................................................CC-AAGTGACTTCAAAATTGTAGCTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................CGCAGC-------------------------------------AGCAGAGGAAATTGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
....................................................................AAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................AGAGGAAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................ACCAGC-AAT---------------GAATGTGCGTCC-AAGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A----------------------------------------------------------------------------------------T---------------------------------------------------------..........................................1911.00100000010000
.................................................................................................................................................................................................................................................................................................ATATTG--------------------------------------------------------TATGTGAAGTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------AAC...................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................GTGCGTCC-AAGTGACTTCAAAATTGTAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..............................................................................................................................................CTAAAACCAGC-AAT---------------GAATGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................AATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
droEre2
GACGCCAA------TGTCGCAGC-------------------------------------AGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGGGA-AAATCTTTACAGTCGCTCTAAAACTAAC-GATA-CTGCC-CGTCTGTGAATATGCTTTC-AAGTGACTTCCAAATTGTAGCTATGTTTATGCCCA-GTAATGT---------------------------------------------TAAATATTG-------CAATTG--------------------------------------------------------TATGTGAAGTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCCAACATTTCGATGAAA----------------TGTGAAA-TCGTTTCGTAAATATTATTCAATTT-----ATTCTAATATAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......A------TGTCGCAGC-------------------------------------AGCAGAGGAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................AATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
....................................................................AAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................GGAAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.....................................................................AATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droSec2
GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGACAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTT-AAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATAAATAAAAGGCG------GAAAAATCTAGCATAACTACTT-------ATGTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTT-----ATTTAAATTTAATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
GATGTCAA----------------------------------------------------AGCAGAGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
......................................................................ATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................AGCAAATTGTGCCCAAGGACGCGGC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
......................................................................ATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................................GCAAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
droSim2
GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGACAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATTTAGATAAGGCG------GAAAAATCTGGCATAATTATTT-------ATGTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTT-----ATTCAACTTTAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................CAGCC-TGTCTGTGAATGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
......................................................................................................................................CAGTCGCTTTAAAACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...GTCAA----------------------------------------------------AGCAGAGCAAATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...................................................................CAAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
......................................................................ATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.............................................................GCAGAGCAAATTGTGCCCAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
..................................................................................................................................................................................................................................................TTAGATAAGGCG------GAAAAATCTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................................GCAAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...................................................................CAAATTGTGCCCAAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................................................................................................................................................................................GATAAGGCG------GAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
dm3
GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT-------AAA-AACGGGA-AAATCTCCACAGTCGCTTTAAAACCAGA-GATAACAGCC-TGTCTGTGAATGTGGTTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACA-GTATTGTGTAC--------ATAAGGAAAAGGCG------GAAAAATCTGGCATTATTATTT-------ATGTAGCT---------------------------------------------------------GTAAAGTTCCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A------------------------------------------------------------------------------------------------------CCAAGCATTTTGATATAAAAATTCAATTTAAATTTGCGATATTCGTTTCGAAAATAGT-------------------AATTTAATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................AAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000
................................................................GAGCAAATTGTGCCCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
GATGTCAA----------------------------------------------------AGCAGAGCAAATTGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A------------------------------------------------------------------------------------------------------CCAAGCAGA.............................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TGTGCCCAAGGACGCGGC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AAATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000
..................................................................GCAAATTGTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TGTGCCCAAGGACGCGGC-AACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAGAGCAAATTGTGCCCAAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAGAGCAAATTGTGCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCAA----------------------------------------------------AGCAGAGCAAATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................A-GTATTGTGTAC--------ATAAGGAAAAGGCG------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AGCAAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AGCAAATTGTGCCCAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......A----------------------------------------------------AGCAGAGCAAATTGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTTAAATTTGCGATATTCGT........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGCCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTATTATTT-------ATGTAGCT---------------------------------------------------------GTAA..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TACTTAAAAACTGTAGCTATGTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AGAGCAAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AATTGTGCCCAAGGACGCGGC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCAA----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................TGCCCAAGGACGCGGC-AACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGATATTCGTTTCGAAAATAG.............................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CAGAGCAAATTGTGCCCAAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GCAAATTGTGCCCAAGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AAGGCG------GAAAAATCTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ATTGTGCCCAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......A----------------------------------------------------AGCAGAGCAAATTGTGCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
GATGTCAA----------------------------------------------------AGCAGAGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................AAATTGTGCCCAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................AGCC-TGTCTGTGAATGTGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCGATATTCGTTTCG....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................AGAGCAAATTGTGCCCAAGGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................CAAATTGTGCCCAAGGACGCGGC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A------------------------------------------------------------------------------------------------------GG....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GTAAAGTTCCTG--------------------------------------------------------------------------------------------------------------------------------------------AACATAA--------------------------------------------------A------------------------------------------------------------------------------------------------------CCAAGCA...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CAGA-GATAACAGCC-TGTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
GACGTCAA------AGTCGAGGC-------------------------------------GGACGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAA--GCACGC-GATATTCCACAGTCACCTCAGAACTAAA-GATAACAGCT-AACGTGAG-ATGTGCCCTCGAAGTGACCCTCAAACTGTAG-TATGTTCATACCAA-GTTA-AT----T--------T------------------------------------------------------------ACTAAATAATGG--GAA-TAAGTACACTTTATAGCATATGTGTGAATTGTTCGTCAAGTTCCTGTGTAGG----------CAA------CTAAACAAGCTTGGT-TAAAAGCAACCAAATTATTTATAAAAGTTCCTCTGTATCTGTATACAGTTGTTTTTTTTTTAAGAATTTAAATAAGAAATACCACTTGA---------GTATA----------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTGA-------SizeHit CountTotal NormTotal
No Reads
droBia1
GACGCCAG------CGCCGCTGC-------------------------------------GGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAAAAACAGGC-GAATCCCCACAGTCGCTCTCAAACCAAC-GATAACAGCT---CCCGAAAATGTGCCTTCGAGCTGGCGCTCAAACTGTGCAAATGTTTATGCGAA-GTTA-A-AC----------TTA----------------------------------------------------CAAAAAG-----------GGTGA-AAA-----------------------------------------------AGGAGATAAAAATCGTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------AGAAGTGGTTTTGTGGAGTTAACTTGTGGAAATTTAACACTTATACTGGTCATATGTTGTTCATTAAAGACAAC-------------ATATAT---------------------------------------------------------TTAAAGTTAAAAATAAACTACTT-----ATTCCCCTA-GATTSizeHit CountTotal NormTotal
No Reads
droTak1
GACGCCAA------CGTCGCAGC-------------------------------------GGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAA------------ACAGGC-GAATCTCTACAGTCGCTCTAAAACCAAC-GATAACAGCA-CACCTGAAAATGTGTC-----------TCTCAAACTGCAGCCATGTTTATAGATA-AAATATCGTAA-------------------------------------------------------------------------------------------------------------------------------------------------AATTATAATAAAAACCAGACAACTTGGGTGTAAAATCCACAAACGTATTTACAAAAATCCCCT-AAA----------------------------------------------------------------------------------------A---------------------------CTTA--GTTTATGCGCAGTTAATTTATAAAAAGTCATCAGCCAAATTT-------GTTTTTGAT--AAGATAAGCAACTGATTACAAAAAAATGTAAAGTTCCAAATCCA---------------------TATTAAATT----AAATTTTTTTTGACAAAAAT-----------------CCC------TTSizeHit CountTotal NormTotal
No Reads
droEle1
A-CGCCAA------CGTCGCAGC-------------------------------------GGCAGAGGAAATTGTTCCCAAGGACGCTGC-AACGTAAGTACAAAA-------AAA--ACAAGCGGAAATCGTACAATGGCTCCTAAACCGAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAGTGACTCATAAACTGTCGCTGTGTTTATGCGAG-GTTA-CT----T--------G------------------------------------------------------------ATAAAACAGTGT--GCC------ACACTTTCTCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAATAAATACAATGGATCAAAATCTACAGTGCAGTACCTCTGTGTAAAACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGATAGAA-TSizeHit CountTotal NormTotal
No Reads
droRho1
-ACGCCAA------CGCCGCTGC-------------------------------------GGCTGAGGAAATTGTTCCCAAGGACGCGGC-AACGTAAGTAGAAAA-------AAA-AACACGC-AAAATTCTACAGTTCCTACTAAACCAAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAATGACTCTCAAACTGTCGCTATGTTTATACGAG-CTTA-T-ACTGTTTTACG------------------------AATAATAGTATTCTTAAAGTTGCTATATGTTGCTACATC-----------GGTCA-AAT-----------------------------------------------GACAGTCAAAATTCAATAAAAACCTAAC------CAA-TGT---------------------------------------------------------------------------GAGTTGTATTAGTGAAATATTAATATAAGATAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAATACAATATATCGATGGATATAAACCGGGGAAG--TAATTGCAACCSizeHit CountTotal NormTotal
No Reads
droFic1
GAAGCTG---------------T-------------------------------------TGCAGAGGAAATTGTTCCCAAGGACGCGGC-AACGTGAGTAGAAAA-------AAA--TCTGGC-GAGTCCCCACAGTTCCTCTCAAACCAAA-GATAACGGTT-CACCTGAAAATGTGCCTGT-GAATGCTTCTAAAACTGTGACAATGTTTATGCGAAAGTTA-TT----TTCTTCGTAGAC--------------------------ACGTTT-------------------------------------------------------------------------------------------------------------------------------TGT-T------------------------------------------------------------------TCAAATAATAAATGCGAGTTCA---------GAACATAATATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
GATGCCAG------CGATGCTGC-------------------------------------GCCGGAGGAGATTGTGCCCAAGGACGCGGC-CACGTGAGTAACGCGCATATTAAAAGCACAAGT-GCACCAAAGCAGTCGATGTAAAACTGCCAGATAACAGTTATGCCTGAATGTATGTCAATGCAGTTGCTCTGAAACTGTAGGTGTGTTTATGCGAAAG-TTAGTGTTATTTTTAG------------------------TACAAGGACGTTTTTGTGA-------TTATTGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGTTTTCCATAGGGAAACTTATAATATAA--SizeHit CountTotal NormTotal
No Reads
droAna3
GACGTCAAAATGGGCATCACGTC-------------------------------------GGCAGAGGAAATTGTACCCAAGGACGCGGC-AACGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...GTCAAAATGGGCATCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.008400022
......................................................................ATTGTACCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003010020
...GTCAAAATGGGCATCACGTC-------------------------------------GGCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002100010
..CGTCAAAATGGGCATCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002101000
...GTCAAAATGGGCATCACGTC-------------------------------------GGCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................................................................TTGTACCCAAGGACGCGGC-AACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
......................C-------------------------------------GGCAGAGGAAATTGTACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......AAAATGGGCATCACGTC-------------------------------------GGCAGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............GGCATCACGTC-------------------------------------GGCAGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................GAAATTGTACCCAAGGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............ATCACGTC-------------------------------------GGCAGAGGAAATTGTACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
............................................................GGCAGAGGAAATTGTACCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...GTCAAAATGGGCATCACGTC-------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......AAATGGGCATCACGTC-------------------------------------GGCAGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
GGTGCCGC------CGTCGCAGCAGTCCCCCCAACCTGCTGATATTGACGTCAAGCTGATGGCCGAGGAAATCGTACCCAAGGACGCGGC-AACGTAAGTAGACCA-------GGT-TTTATTAAAA---------------------------------------ATCTGAATATTAC--------------------------------ACGAACTTG-GTACTTAGTAC--------TTGGTGGTCTGGTGATTTTAGCAAAATTTAGTACTCCTACAACTGGGAGATAAGGTTT-TTTGCCCAAAAGTGGGCGA-TAA-----------------------------------------------GGG----------CAACACAAACACGCT------GTT-TAC---------------------------------------------------------------------------AAGTGAGGTCATGAAAATAGTAACAAAATATAAATAATTACCAAAAAA---------------------------TAAAACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGTATCSizeHit CountTotal NormTotal
No Reads
dp5
GATG----------------------------------------------------------CGGAGCAGATTGTTCCCAAGGACGCGGA-AACGTAAGTAGAGTT-------GTA----------------CCC---------------------------------------------------AGTGAGTCTAAAACTGTATAAAAGCG-----------------------------------------------------------------------------------------------------TGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................GCAGATTGTTCCCAAGGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
..................................................................GCAGATTGTTCCCAAGGACGCGGA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
droPer2
GATG----------------------------------------------------------CGGAGCAGATTGTTCCCAAGGACGCGGGAAACGTAAGTAGAGTT-------GTA---------------CCCCAGTGAGTCTAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................GATTGTTCCCAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
................................................................................AGGACGCGGGAAACGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.112000020
droWil2
C----CGA----------------------------------------------------TGCGGAGCAAATTGTACCCAAGGATGCAGC-AACGTAAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................GGAGCAAATTGTACCCAAGGATGCAGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
....................................................................AAATTGTACCCAAGGATGCAGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..................................................................GCAAATTGTACCCAAGGATGCAGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.......................................................................TTGTACCCAAGGATGCAGC-AACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.............................................................GCGGAGCAAATTGTACCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
GCCCCTGA----------------------------------------------------TGCGGAGCAGATTGTGCCCAAAGACGCGGC-AACGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................GGAGCAGATTGTGCCCAAAGACGCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002001000000001000000000000000000000000000000000000000000000000000
....................................................................AGATTGTGCCCAAAGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000010000000000000000000000000000000000000000000000000
....................................................................AGATTGTGCCCAAAGACGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000100000000000000000000000010000000000000000000000000000
............................................................TGCGGAGCAGATTGTGCCCAAAGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000001000000001000000000000000000000000000
...CCTGA----------------------------------------------------TGCGGAGCAGATTGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
......................................................................ATTGTGCCCAAAGACGCGGC-AACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
......GA----------------------------------------------------TGCGGAGCAGATTGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................GTGCCCAAAGACGCGGC-AACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
................................................................GAGCAGATTGTGCCCAAAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
.CCCCTGA----------------------------------------------------TGCGGAGCAGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
....CTGA----------------------------------------------------TGCGGAGCAGATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................GATTGTGCCCAAAGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
............................................................TGCGGAGCAGATTGTGCCCAAAGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................GCAGATTGTGCCCAAAGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....CTGA----------------------------------------------------TGCGGAGCAGATTGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.................................................................AGCAGATTGTGCCCAAAGACGCGGC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.................................................................AGCAGATTGTGCCCAAAGACGCGGC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
..................................................................GCAGATTGTGCCCAAAGACGCGGC-AACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................AGATTGTGCCCAAAGACGCGGC-AACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
......GA----------------------------------------------------TGCGGAGCAGATTGTGCCCAAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.....TGA----------------------------------------------------TGCGGAGCAGATTGTGCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
GAAGCCGA------------TGA-------------------------------------AATCGAGCAAATTGTGCCCAAAGACACCGC-AACGTAAGTAAAACT-------AAA--GCAACATACATTCATACACACGC--AGAAACGAAC-G-------TA-CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................AATTGTGCCCAAAGACACCGC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GACG----------------------------------------------------------GTGAGCAGATTGTGCCAAAGGACGCGGC-AACGTAAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................GCAGATTGTGCCAAAGGACGCGGC-AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
.........................................................................GTGCCAAAGGACGCGGC-AACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.ACG----------------------------------------------------------GTGAGCAGATTGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
..................................................................GCAGATTGTGCCAAAGGACGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101

Generated: 05/17/2015 at 10:34 PM