dya_430

------------------------##########################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGTAAAATCCAACAGTAATTCAAAATGGCTGATGTGGCTGATCAAAAAAAGTGAGTACTTAGCCTTTATTTCGGGTGCTTGTGGATTTTGTTTAAGGAATGGTCTTGTACCGAATTTCGTAAATATAAATGTTATTCGCCGCAACGATTTGGAAAAATTTTCGTTTGAATTCTGTGTCTATATACGCAAACCGCTTTTGGCACTAATGTAGTTGTCTCGTTCCCGCACAAGGCACAGCGGTGTGCGCGCAA ************************************************...........(((.......(((.(((.(((((((...((((((((((.((((((((..(((((..(((........)))..)))))..)))).))))..........))).))))))).....)))))))...)))..))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	M056 embryo	V120 male body	V058 head
.....................AAAATGGCTGATGTGGCTGATC................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
..................TTCAAAATGGCTGATGTGGCTGATCA...............................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
...AAAATCCAACAGTAATTCAAA...................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..............................GATGTGGCTGATCAAAAAA..........................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0
................AATTCAAAATGGCTGATGTGGC.....................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
......................................................................TGGGGTCCTTGTGGAGTTTGTT...............................................................................................................................................................	22	3	2	0.50	1	0	0	0	1

TCATTTTAGGTTGTCATTAAGTTTTACCGACTACACCGACTAGTTTTTTTCACTCATGAATCGGAAATAAAGCCCACGAACACCTAAAACAAATTCCTTACCAGAACATGGCTTAAAGCATTTATATTTACAATAAGCGGCGTTGCTAAACCTTTTTAAAAGCAAACTTAAGACACAGATATATGCGTTTGGCGAAAACCGTGATTACATCAACAGAGCAAGGGCGTGTTCCGTGTCGCCACACGCGCGTT ************************************************...........(((.......(((.(((.(((((((...((((((((((.((((((((..(((((..(((........)))..)))))..)))).))))..........))).))))))).....)))))))...)))..))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V052 head
..............................................TGATCCCTCATGAATCGGAA.........................................................................................................................................................................................	20	3	4	1.25	5	5	0
......................TTTACCGACTACTCTGACTAA................................................................................................................................................................................................................	21	3	6	0.17	1	0	1
......................................................................................................................................................................................................CCGTGGTTACTTCCACAGAG.................................	20	3	7	0.14	1	1	0

Species	Coordinate	ID	Alignment
droYak3	2R:1215865-1216115 +	dya_430	AGTAAA---AT-CCAACAGTAATTCAAAATGGCTGATGTGGCTGATCAAAAAAAGTGAGTACT-T-----AGC-----------C--TT-T------------------------------------------A---TT--TC-----GG----------------GT-------GCTTGTG----GAT-TTTGTTTAAGGAAT------------------GG-TCTTG--------------------TACCGAATTTCGTAAAT---ATAAATGT------------TAT-TC---GC-CGCAACGATTTGGAAAAA--TTTTCG----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTT-TGGCACTAATGTAGTTGTCTCGTTCCCGCACAAGGCACAGCGGTGTGCGCGCAA
droEre2	scaffold_4845:2886909-2887155 +		AGTAAA---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACA-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------GC-------GTTTGTG----GAT-TTTGTATAGGCAAT------------------GG-ACTTG--------------------CAGCAAATTTTGCAAAT---GTAAATCT------------------------CGCAACGATTTGGAAAAT--TTTTCT----TTTGAAT-TC----------T----GTCTAT-ATACGCAAA-CCGCTTGTTGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCACAACGGTGTGCGCGCAA
droSec2	scaffold_28:121831-122088 -		AGTTAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTTTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCAAAT---GAAAATCTAT--------GTTAT-TT---GC-CGCAAACATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-ACGCTTCTCGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA
droSim2	2l:20911176-20911433 -	dsi_10442	AGTTAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTTTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCAAAT---GAAAATCTAT--------GTTAT-TT---GC-CGCAAACATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-ACGCTTCTCGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA
dm3	chr2L:21629459-21629716 -		AGTAAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-CTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTGTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCTAAT---GAAAATCTAT--------GTTAT-TT---GC-CGAAAAGATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGTTGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA
droEug1	scf7180000409752:79093-79364 -		ACTTAA---AA-CCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTTGC-----------C--TT-G------------------------------------------T---AT--A-----------------------TGT-------GCCCGTG----CATTTTTGTTTAAACAATTGGA--TGGA------ATTG-ACTTG--------------------AATCGAATTTCGCGAGT---GTACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTAAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTTGTGGAATCTATGTTGTTGTCTCGCTTTTGCCAATGGGCTCTAAGTGTGCGCGCAA
droBia1	scf7180000302422:3512921-3513203 +		AGTAAA---ACACCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTTGG-----------CGTTT------------------------------------------------------------------------TGTGTGT-------GCCTGTG----CAT-TTTGTTTAAACAATTGGA-GTGGAAATGGAATGG-ATTGG--------------------CAGCGAATTTCGCGAGT---GTACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAAACCGCTTGGCGGCAACAATGCAGTTGTCTCGCTCTCGCCAGTGGACTGTAGGTGTGCGCGCAA
droTak1	scf7180000415390:280090-280383 +		AGTAAA---ACACCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTGGC-----------CGTTT-G------------------------------------------T---AT--GC-----GGGCGT------CTGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGGA--TGGAATTGGAGTGG-ATTTG--------------------CAGCGAATTTCGCGAGT---ATACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAAACCGCTTGGCGGCAACAGTGCGGTTGTCTCGCTCTCGCCAGTGGTCCTTAGGTGTGCGCGCAA
droEle1	scf7180000490970:1055010-1055285 +		AGTAAAAAAAA-CCAACCGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAAAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------A---AA--GC-----GG----------------GT-------GCTTGTG----CAT-TTTGTTTAAACAATTGGA--TGTA------ATGG-ATTTG--------------------GAGCGAGTTTCTCGAGT---GTACATCTTTTTC-----AATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------T--GTGTCTAC-ATACGCAAA-CCGCTTGGCGGCATTAAAGCAGTTGTCTCGCTTGCGCTGATGGCCAGTAGGGGTGCGCGCAA
droRho1	scf7180000780068:24970-25228 -		AGTAAA--------AACCGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------A--TT-G------------------------------------------T---AT--GC-----GG----------------GT-------GTCTGTG----TAT-TTTGTTTAAACAATTGGA--TGGA------TTGG-ATTTT--------------------AAGCGAGTTTCGC--------------TTTTTG-----GATGT-TC---AT-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAA-CCGCTTGGCAGCACTAAAGCAGTTGTCCCGCTCGCGCCGATGGC-CGTAGATGTGCGCGCAA
droFic1	scf7180000452378:77716-77996 -		AGTAAA----A-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TCTGG-----------C--TT-G------------------------------------------T---AT--GC-----GAGAGT------TTGTGTGT-------GCCTGTG----CAT-TTTGTTTAAACAATTGGA--T-----------GG-ATTTG--------------------CAGCGCATTTCGCAAGT---GTACATCTTTTTTTTTTTGCTAT-TC---GC-CGCAACGGTTTGGAAA-A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGTGGCATCAATACAGTTGTCTCGCTCGCCCCTCTGGTTAGAAGGTGTGCGCGCAA
droKik1	scf7180000302660:126152-126446 +		AGTAAA----A-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAATTTTA-TTTGG-----------C--TT-G------------------------------------------TTCTAT--GG-----TGGTGT------C--TGTGT-------GCCTGTG----CGT-TTTGCTTAAGCAACTTTA--TAA---------AG-ATTTGTAGGCGGCTGCC----GATGCCTGAAATTGTAGAAAC---ATACATTTTTCCC-------TGTATA---GC-CCCAGCGGTTTGGAAAAA--TTTTCTT---TTTGAAT-TC----------T--GTGT--AT-ACACGCAAA-TTGCTTGGCGGCACCAATGCAGTTGTCTCGCTCTCGCCAGTGTCTAGTAAGGGTGCGCGCAA
droAna3	scaffold_12916:9243861-9244158 -		AGTAAA----T-C---CAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAAT---A-TTTGA-----------A--TT-G------------------------------------------TTCTAT--GT-----GGGTGTA----TATGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGTC--TGGATCTG-----G-ATCTG---ATGGTTGCCAAAAGTTGCACCCAATTTTGCGAG-----TACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA-ATTTTCTT---TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGCGGCAC-ACAGCAGTTGTCTTTCTCCCACCAATGGCCGGCAAATGTGCGCGCAA
droBip1	scf7180000396535:1808128-1808430 -		AGTAAA----T-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAAT---A-TTTGA-----------A--TT-G------------------------------------------TTCTAT--GT-----GGGTGTA----TATGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGTC--TGGATCTG-----G-ATCTG---CTGG-TGCCAAAAGGTGCACCAAATTTCGCGAAT---GTACATCTTTTTC-----AATGT-TC---GC-CGCAACGGTTTGGAAAAAAATTTTCTT---TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGCGGCAC-ACAGCAGTTGTCTCTCTCCCTCCAATGGCCGGCAAATGTGCGCGCAA
dp5	4_group1:4039386-4039681 -		CC-AA----AA-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAGAAAAAGTGAGTAAT---A-TTTGA-----------T--T------------------AGAGG----GT------TCTGTGTGTGTTTTATCT---GGTT----GTTTGTGC---TGTGTTCTGTACATCTGTG----CAT-TTTATTTAAACAATTGCA--TG-----------G-ATCTG--------------------T-TCGAATTTCGCAAGT---GTACATCTTTTTC-----CATGT-TC---TCTCGCAACGGTTTGGAAAAA--TTTTCT----TTTGAATTTC----------T--GTGTCTAT-ATACG--------CTTTGCGGCATTAATACAGTTGTCTCGCTTGCGCCAATGCCGAGTAAACGTGCGCGCAA
droPer2	scaffold_5:1230054-1230349 +		CC-AA----AA-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAGAAAAAGTGAGTAAT---A-TTTGA-----------T--T------------------AGAGG----GT------TCTGTGTGTGTTTTATCT---GGTT----GTTTGTGC---TGTGTTCTGTACATCTGTG----CAT-TTTATTTAAACAATTGCA--TG-----------G-ATCTG--------------------T-TCGAATTTCGCAAGT---GTACATCTTTTTC-----CATGT-TC---TCTCGCAACGGTTTGGAAAAA--TTTTCT----TTTGAATTTC----------T--GTGTCTAT-ATACG--------CTTTGCGGCATTAATACAGTTGTCTCGCTTGCGCCAATGCCGAGTAAACGTGCGCGCAA
droWil2	scf2_1100000004585:8704946-8705259 +		A--------AA-CCAACAGTAAAACAAAATGGCTGATGTGGCTGAGCAAAAAAAGTGAGTAAT-GTAGATAGATATCGACAAAAA--ATAATAAGTAA-AATGTTTAGTGC----CT------T-TGTGAATACTACATCT---GTGTGTGT----GTGCAAGTGTGT-------TTTTGAG----TAT-TTTGTTTAAACAATTT-----------------------------------------------------------GT---GCACTTTTTCTGC-----CATGT-TCTTATT-TGCAACGGTTTGGAAAAA--TTTTCTTTTTTTTGAAT-TTCTTTCGGCCCTCTGTGTCTAT-ATACGCAAA-A-GCT----GGTTTTCAAGTAGTTGTCTCGCTTCCACTTGGGCAATTTAAATGTGCGCGCAA
droVir3	scaffold_12963:47462-47750 -	dvi_9806	AGTAAT---TCTTTAAAAG----TTAAAATGGCTGATGTGGCTGAGAAAAAGAAGTGAGTAATATTA-TTTGA-----------A--TTTGTGTGTAA-TGTGT---GTGC----CTTAGTCTA-T-------A---TT--GC--------------------------------ATGTGTGCGTTGAA-TTTGTTCAAACAATA-TA--TATA------GCGGCTATTG--------------------CGGCTAATTTCGCAAGTGGTGTACATCATTTTC----------------------TTCAGTTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTAT-CTACGTAAA-ATGCTTGA-ACAATTTATAGAGTTGTCTCGCTCACGCCAAAGCGGCCCAGATGTGCGCGCAA
droMoj3	scaffold_6500:11488613-11488915 -	dmo_1519	AGTAAT---TCTTTAAAAG----TTAAAATGGCTGATGTGGCTGAGAAAAAGAAGTGAGTAATTTTA-TTTGG-----------A--TTTGTGTGTAAATATGT---GTGA----TCTAGCCTT-T-------G---TT--GC-----A--------------TGTGT-------GTGTGTGCGTTGAA-TATGTTTAAACAATA-TA--TGCA------GCGGCAATTG--------------------CGGGTAATTTCGCAAGTGATGTACATAATTTTT------------T---TT-TCCAACGGTTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTATCCTACGTAAA-ATGCTTGA-ACAATCTATAGAGTTGTCTCGCTTACTCCAAAGCTGTCTAAATGTGCGCGCAA
droGri2	scaffold_15252:1680912-1681222 +		ATTAAA---TTCTTAA----AAAGTAAAATGGCTGATGTGGCTGACAAAAAGAAGTGAGTAATTTTA-TTTGA-----------A--TTTGTGTGTAAATGTGT---GTGTGCTCCT-------------------TAGCTGCTGGCC----GTCTAAGC-----------ATACATGTGTGCGCTGAA-TTTGTTTAAACAATA-TATACGTA------GCGGCAATTG--------------------CGGCTAGTTTTGCAAGTGGTGTACATCATTTTC-----------------T-TCCAACGGCTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTAT-CTGCGTAAA-AGGTT-GGAAAATGCAATAGAGTTGTCTCGCTCTCGCTAAGGCGGTTCAAATGTGCGCGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

AGTAAA---AT-CCAACAGTAATTCAAAATGGCTGATGTGGCTGATCAAAAAAAGTGAGTACT-T-----AGC-----------C--TT-T------------------------------------------A---TT--TC-----GG----------------GT-------GCTTGTG----GAT-TTTGTTTAAGGAAT------------------GG-TCTTG--------------------TACCGAATTTCGTAAAT---ATAAATGT------------TAT-TC---GC-CGCAACGATTTGGAAAAA--TTTTCG----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTT-TGGCACTAATGTAGTTGTCTCGTTCCCGCACAAGGCACAGCGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................AAAATGGCTGATGTGGCTGATC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................TTCAAAATGGCTGATGTGGCTGATCA....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...AAA---AT-CCAACAGTAATTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................GATGTGGCTGATCAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................AATTCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AGTAAA---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACA-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------GC-------GTTTGTG----GAT-TTTGTATAGGCAAT------------------GG-ACTTG--------------------CAGCAAATTTTGCAAAT---GTAAATCT------------------------CGCAACGATTTGGAAAAT--TTTTCT----TTTGAAT-TC----------T----GTCTAT-ATACGCAAA-CCGCTTGTTGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCACAACGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........T-CTAACAGTAATTCAAAATGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................T-ATACGCAAA-CCGCTTGTTGGCACT...............................................	25	1	1.00	1	1	0	0	0	0	0	0
.................AGTAATTCAAAATGGCTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

droSec2

AGTTAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTTTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCAAAT---GAAAATCTAT--------GTTAT-TT---GC-CGCAAACATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-ACGCTTCTCGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................TGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...............................GCTGATGTGGCTGAGCAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................GTAATTCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
..................GTAATTCAAAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..............AACAGTAATTCAAAATGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droSim2

AGTTAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTTTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCAAAT---GAAAATCTAT--------GTTAT-TT---GC-CGCAAACATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-ACGCTTCTCGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................TGGCTGATGTGGCTGAGCAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
......................TTCAAAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...TAT---AT-CTAACAGTAATTCAAAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTT................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................GCTGATGTGGCTGAGCAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..............................GGCTGATGTGGCTGAGCAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................T------------------GG-ACTTG--------------------TAGCGAATTTTGC.............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................GATGTGGCTGAGCAAAAGAAGT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................TGGCTGAGCAAAAGAAGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................TGAGCAAAAGAAGTGAGTACT-TTG-TT..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TCAAAATGGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................CTGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................ATGTGGCTGAGCAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATGTGGCTGAGCAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............TAACAGTAATTCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............TAACAGTAATTCAAAATGGCTGATGT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TCAAAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....T---AT-CTAACAGTAATTCAAAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..TTAT---AT-CTAACAGTAATTCAAAATGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................TTCAAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............CTAACAGTAATTCAAAATGGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................TGAGCAAAAGAAGTGAGTACT-....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....AT---AT-CTAACAGTAATTCAAAATGGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGTAATTCAAAATGGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................AAATGGCTGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................TTCAAAATGGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

dm3

AGTAAT---AT-CTAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-CTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------AC-------GTTTGTG----GAT-TTTGTTTAAGCAAT------------------GG-ACTTG--------------------TAGCGAATTTTGCTAAT---GAAAATCTAT--------GTTAT-TT---GC-CGAAAAGATTTGGAA--A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGTTGGCACTAATGTAGTTGTCTCGTTCCCGCCAAAGGCAAAACGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................AAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	211.00	211	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	62	57	68	0	17	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	71.00	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	32	31	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCTGATGTGGCTGAGCAAAAGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGCAAAAGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	19	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
................................CTGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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............................ATGGCTGATGTGGCTGAGCAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................T-TTG-CTTGC-----------C--TT-G------------------------------------------T---TT--TC-----GG----------------A.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AACAGTAATTCAAAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCAAAACGGTGTGCGCGC..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TGGCTGATGTGGCTGAGCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGTAATTCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGTAATTCAAAATGGCTGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

ACTTAA---AA-CCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTTGC-----------C--TT-G------------------------------------------T---AT--A-----------------------TGT-------GCCCGTG----CATTTTTGTTTAAACAATTGGA--TGGA------ATTG-ACTTG--------------------AATCGAATTTCGCGAGT---GTACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTAAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTTGTGGAATCTATGTTGTTGTCTCGCTTTTGCCAATGGGCTCTAAGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGTAAA---ACACCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTTGG-----------CGTTT------------------------------------------------------------------------TGTGTGT-------GCCTGTG----CAT-TTTGTTTAAACAATTGGA-GTGGAAATGGAATGG-ATTGG--------------------CAGCGAATTTCGCGAGT---GTACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAAACCGCTTGGCGGCAACAATGCAGTTGTCTCGCTCTCGCCAGTGGACTGTAGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGTAAA---ACACCAACAGTAATTCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTA-TTGGC-----------CGTTT-G------------------------------------------T---AT--GC-----GGGCGT------CTGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGGA--TGGAATTGGAGTGG-ATTTG--------------------CAGCGAATTTCGCGAGT---ATACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAAACCGCTTGGCGGCAACAGTGCGGTTGTCTCGCTCTCGCCAGTGGTCCTTAGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTAAAAAAAA-CCAACCGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAAAAGTGAGTACT-TTG-TTTGC-----------C--TT-G------------------------------------------A---AA--GC-----GG----------------GT-------GCTTGTG----CAT-TTTGTTTAAACAATTGGA--TGTA------ATGG-ATTTG--------------------GAGCGAGTTTCTCGAGT---GTACATCTTTTTC-----AATGT-TC---GC-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------T--GTGTCTAC-ATACGCAAA-CCGCTTGGCGGCATTAAAGCAGTTGTCTCGCTTGCGCTGATGGCCAGTAGGGGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGTAAA--------AACCGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TTTGC-----------A--TT-G------------------------------------------T---AT--GC-----GG----------------GT-------GTCTGTG----TAT-TTTGTTTAAACAATTGGA--TGGA------TTGG-ATTTT--------------------AAGCGAGTTTCGC--------------TTTTTG-----GATGT-TC---AT-CGCAACGGTTTGGAAAAA--TTTTCT----TTTGAAT-TC----------TGTGTGTCTAT-ATACGCAAA-CCGCTTGGCAGCACTAAAGCAGTTGTCCCGCTCGCGCCGATGGC-CGTAGATGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTAAA----A-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTACT-TTG-TCTGG-----------C--TT-G------------------------------------------T---AT--GC-----GAGAGT------TTGTGTGT-------GCCTGTG----CAT-TTTGTTTAAACAATTGGA--T-----------GG-ATTTG--------------------CAGCGCATTTCGCAAGT---GTACATCTTTTTTTTTTTGCTAT-TC---GC-CGCAACGGTTTGGAAA-A--TTTTCT----TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGTGGCATCAATACAGTTGTCTCGCTCGCCCCTCTGGTTAGAAGGTGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGTAAA----A-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAATTTTA-TTTGG-----------C--TT-G------------------------------------------TTCTAT--GG-----TGGTGT------C--TGTGT-------GCCTGTG----CGT-TTTGCTTAAGCAACTTTA--TAA---------AG-ATTTGTAGGCGGCTGCC----GATGCCTGAAATTGTAGAAAC---ATACATTTTTCCC-------TGTATA---GC-CCCAGCGGTTTGGAAAAA--TTTTCTT---TTTGAAT-TC----------T--GTGT--AT-ACACGCAAA-TTGCTTGGCGGCACCAATGCAGTTGTCTCGCTCTCGCCAGTGTCTAGTAAGGGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGTAAA----T-C---CAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAAT---A-TTTGA-----------A--TT-G------------------------------------------TTCTAT--GT-----GGGTGTA----TATGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGTC--TGGATCTG-----G-ATCTG---ATGGTTGCCAAAAGTTGCACCCAATTTTGCGAG-----TACATCTTTTTC-----GATGT-TC---GC-CGCAACGGTTTGGAAAAA-ATTTTCTT---TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGCGGCAC-ACAGCAGTTGTCTTTCTCCCACCAATGGCCGGCAAATGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................AAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................CAAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................TCTAT--GT-----GGGTGTA----TATGTGT..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................ATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................AAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTTC-----GATGT-TC---GC-CGCAACG...............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................GCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................................GCTGAGCAAAAGAAGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................GCTGATGTGGCTGAGCAAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............................GCTGATGTGGCTGAGCAAAAGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................GTAAATCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...AAA----T-C---CAGTAAATCAAAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................TGTC--TGGATCTG-----G-ATCTG---ATGGTTGC...................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
...................................ATGTGGCTGAGCAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................AATGGCTGATGTGGCTGAGCAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................AATGGCTGATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................TC---GC-CGCAACGGTTTGGAA.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................AAATCAAAATGGCTGATGT.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............................ATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................GCTGATGTGGCTGAGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....................AAATCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................TGATGTGGCTGAGCAAAAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droBip1

AGTAAA----T-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAAAAGAAGTGAGTAAT---A-TTTGA-----------A--TT-G------------------------------------------TTCTAT--GT-----GGGTGTA----TATGTGTGT-------GCCTGTG----CA--TTTGTTTAAACAATTGTC--TGGATCTG-----G-ATCTG---CTGG-TGCCAAAAGGTGCACCAAATTTCGCGAAT---GTACATCTTTTTC-----AATGT-TC---GC-CGCAACGGTTTGGAAAAAAATTTTCTT---TTTGAAT-TC----------T--GTGTCTAT-ATACGCAAA-CCGCTTGGCGGCAC-ACAGCAGTTGTCTCTCTCCCTCCAATGGCCGGCAAATGTGCGCGCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CC-AA----AA-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAGAAAAAGTGAGTAAT---A-TTTGA-----------T--T------------------AGAGG----GT------TCTGTGTGTGTTTTATCT---GGTT----GTTTGTGC---TGTGTTCTGTACATCTGTG----CAT-TTTATTTAAACAATTGCA--TG-----------G-ATCTG--------------------T-TCGAATTTCGCAAGT---GTACATCTTTTTC-----CATGT-TC---TCTCGCAACGGTTTGGAAAAA--TTTTCT----TTTGAATTTC----------T--GTGTCTAT-ATACG--------CTTTGCGGCATTAATACAGTTGTCTCGCTTGCGCCAATGCCGAGTAAACGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................AAATCAAAATGGCTGATGTGGCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................AAATGGCTGATGTGGCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................C---TGTGTTCTGTACATCTGTG----CC........................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................AAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............AACAGTAAATCAAAATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................GGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................AAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................AAATGGCTGATGTGGCTGAGCAGAA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....A----AA-CCAACAGTAAATCAAAATGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................ATCAAAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GGCTGATGTGGCTGAGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................GTAAATCAAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GTAAATCAAAATGGCTGATGT.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................AATCAAAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGCAGAA.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CAAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................ATCAAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................TAAATCAAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GTAAATCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................AATCAAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................GGCTGATGTGGCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................AAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTGCA--TG-----------G-ATCTG--------------------T-TCGAATT.................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AATGGCTGATGTGGCTGAGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................AAATCAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGTAAATCAAAATGGCTGATGTGGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTTGTCTCGCTTGCGCCA.......................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................CTGATGTGGCTGAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................T---GGTT----GTTTGTGC---TGTGTTCT.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CC-AA----AA-CCAACAGTAAATCAAAATGGCTGATGTGGCTGAGCAGAAAAAGTGAGTAAT---A-TTTGA-----------T--T------------------AGAGG----GT------TCTGTGTGTGTTTTATCT---GGTT----GTTTGTGC---TGTGTTCTGTACATCTGTG----CAT-TTTATTTAAACAATTGCA--TG-----------G-ATCTG--------------------T-TCGAATTTCGCAAGT---GTACATCTTTTTC-----CATGT-TC---TCTCGCAACGGTTTGGAAAAA--TTTTCT----TTTGAATTTC----------T--GTGTCTAT-ATACG--------CTTTGCGGCATTAATACAGTTGTCTCGCTTGCGCCAATGCCGAGTAAACGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................ACATCTTTTTC-----CATGT-TC---TCTCGCAAC................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................TTCTGTACATCTGTG----CAT-......................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................TGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............ACAGTAAATCAAAATGGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................CAAAATGGCTGATGTGGCTG........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................AATGGCTGATGTGGCTGAGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
............................ATGGCTGATGTGGCTGAGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................GTAAATCAAAATGGCTGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................AATCAAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

A--------AA-CCAACAGTAAAACAAAATGGCTGATGTGGCTGAGCAAAAAAAGTGAGTAAT-GTAGATAGATATCGACAAAAA--ATAATAAGTAA-AATGTTTAGTGC----CT------T-TGTGAATACTACATCT---GTGTGTGT----GTGCAAGTGTGT-------TTTTGAG----TAT-TTTGTTTAAACAATTT-----------------------------------------------------------GT---GCACTTTTTCTGC-----CATGT-TCTTATT-TGCAACGGTTTGGAAAAA--TTTTCTTTTTTTTGAAT-TTCTTTCGGCCCTCTGTGTCTAT-ATACGCAAA-A-GCT----GGTTTTCAAGTAGTTGTCTCGCTTCCACTTGGGCAATTTAAATGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................GTGTGT----GTGCAAGTGTGT-------TTTT.................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0
..............................GGCTGATGTGGCTGAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................	19	2	1.50	3	0	1	2	0	0
..............................GGCTGATGTGGCTGAGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	0	2	1	0
...........................................................................................................................T-TGTGAATACTACATCT---GTGT................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........................AAAATGGCTGATGTGGCTGAGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	1	1	0
...................................................AAAGTGAGTAAT-GTAGATAGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................TGATGTGGCTGAGCAAAAA................................................................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	2	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTCGCTTCCACTTGGGCA..................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................TATT-TGCAACGGTTTGGAAAA.....................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................GGCTGATGTGGCTGAGCAAAAA................................................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	2	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTCGCTTCCACTTGG.....................	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGTTGTCTCGCTTCCACTTG......................	25	1	1.00	1	0	1	0	0	0
.......................ACAAAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
...........................AATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
................................CTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0
.........................AAAATGGCTGATGTGGCTGAGCAAAAA................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0
.................................TGATGTGGCTGAGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0
......................AACAAAATGGCTGATGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1
..................................GATGTGGCTGAGCAAAAA................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0
..............................GGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0
.......................ACAAAATGGCTGATGTGGCTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0
......................AACAAAATGGCTGATGTGGCTGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
.....................AAACAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0
.................................TGATGTGGCTGAGCAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
..................GTAAAACAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0
........................CAAAATGGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0
.........................AAAATGGCTGATGTGGCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
.........................AAAATGGCTGATGTGGCTGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0
..................................GATGTGGCTGAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0

droVir3

AGTAAT---TCTTTAAAAG----TTAAAATGGCTGATGTGGCTGAGAAAAAGAAGTGAGTAATATTA-TTTGA-----------A--TTTGTGTGTAA-TGTGT---GTGC----CTTAGTCTA-T-------A---TT--GC--------------------------------ATGTGTGCGTTGAA-TTTGTTCAAACAATA-TA--TATA------GCGGCTATTG--------------------CGGCTAATTTCGCAAGTGGTGTACATCATTTTC----------------------TTCAGTTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTAT-CTACGTAAA-ATGCTTGA-ACAATTTATAGAGTTGTCTCGCTCACGCCAAAGCGGCCCAGATGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................TGATGTGGCTGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................CTGATGTGGCTGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTTTAAAAG----TTAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTTAAAAG----TTAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CTGATGTGGCTGAGAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AATGGCTGATGTGGCTGAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTTCTT---TTTGAAT-TT----------T--GTGTCC...........................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCTGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAGAAGTGAGTAATATT..................................................................................................................................................................................................................................................................................................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................G----TTAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCTTGA-ACAATTTATAGAGTTG.....................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CTTGA-ACAATTTATAGAGTTGT....................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................GCTGATGTGGCTGAGAAAAAGAACGA...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGAAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATGTGGCTGAGAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAGAACGA...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGCTGATGTGGCTGAGAAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................T--GTGTCTAT-CTACGTAAA-ATGCTTGA-ACA..................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTAAAAG----TTAAAATGGCTGATGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCTGATGTGGCTGAGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................CTAATTTCGCAAGTGGTGT....................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATGTGGCTGAGAAAAAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CTGATGTGGCTGAGAAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AG----TTAAAATGGCTGATGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GTGGCTGAGAAAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTTGTGTGTAA-TGTGT---GTGC----.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATGTGGCTGAGAAAAAGAACGA...........................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGTAAT---TCTTTAAAAG----TTAAAATGGCTGATGTGGCTGAGAAAAAGAAGTGAGTAATTTTA-TTTGG-----------A--TTTGTGTGTAAATATGT---GTGA----TCTAGCCTT-T-------G---TT--GC-----A--------------TGTGT-------GTGTGTGCGTTGAA-TATGTTTAAACAATA-TA--TGCA------GCGGCAATTG--------------------CGGGTAATTTCGCAAGTGATGTACATAATTTTT------------T---TT-TCCAACGGTTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTATCCTACGTAAA-ATGCTTGA-ACAATCTATAGAGTTGTCTCGCTTACTCCAAAGCTGTCTAAATGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.GTAAT---TCTTTAAAAG----TTAAAATGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................G----TTAAAATGGCTGATGTG............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................TGATGTGGCTGAGAAAAAGAAGTGAGTA.......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................AATGGCTGATGTGGCTGAGAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................G----TTAAAATGGCTGATGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................ATGGCTGATGTGGCTGAGAAAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................AATGGCTGATGTGGCTGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................A-ATGCTTGA-ACAATCTATAGAGTTGTC...................................	27	1	1.00	1	0	0	0	1	0	0
..................................GATGTGGCTGAGAAAAAGAACGA...........................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0

droGri2

ATTAAA---TTCTTAA----AAAGTAAAATGGCTGATGTGGCTGACAAAAAGAAGTGAGTAATTTTA-TTTGA-----------A--TTTGTGTGTAAATGTGT---GTGTGCTCCT-------------------TAGCTGCTGGCC----GTCTAAGC-----------ATACATGTGTGCGCTGAA-TTTGTTTAAACAATA-TATACGTA------GCGGCAATTG--------------------CGGCTAGTTTTGCAAGTGGTGTACATCATTTTC-----------------T-TCCAACGGCTTGGAAAAA--ATTTCTT---TTTGAAT-TT----------T--GTGTCTAT-CTGCGTAAA-AGGTT-GGAAAATGCAATAGAGTTGTCTCGCTCTCGCTAAGGCGGTTCAAATGTGCGCGCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_430

2R:1215915-1216065 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads