ID:

dya_420

 Coordinate:

2R:719266-719416 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.3 -7.2 -6.9 -6.8

Flybase annnotation

CDS [Dyak\GE12938-cds]; exon [dyak_GLEANR_13152:1]; intron [Dyak\GE12938-in]

Repeatable elements

NameClassFamilyStrand
Chimpo_I-intLTRGypsy-
mature
star
  1. 2L:21821817-21821841 +
  2. dya_420  2R:719354-719378 -
  3. v2_chr2h_random_005:742972-742996 +
  4. v2_chr2L_random_028:565802-565826 -
  5. v2_chr2L_random_028:1232750-1232774 +
  6. v2_chrUn_004:703199-703223 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATTGATACCTACGGCACGCTAAATCTAACATTTGGTCTCAACCTACGGCGTAAGTTAACATATTCGTTCGTCGTAGCGAACCTCCAATCAGCAATCATCGGAGCAGATTTCCTCCACGTCCACGGCCTCATTCTTGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAATCCCTTTCCCATCCCTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACATTTATACAATCAACGTTCAAAG
****************************************************************************************.......((....(((.............((....))..............)))...))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V058
head
 V120
male body
.......................................................................................................................TCCACGGCCTCATTCTTGACCTCAAGGG........................................................................................................ 28 0 1 4.00 4 4 0 0 0 0
...................CTAAATCTAACATTTGGTCTCAACC............................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
........................................................................................TCAGCAATCATCGGAGCAGATTTCC.......................................................................................................................................... 25 0 6 2.67 16 14 2 0 0 0
...................CTAAATCTAACATTTGGTCTCAAC................................................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0
.................................................................................................................TCCACGTCCACGGCCTCATTCTTGACC............................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................TTCGACCAAAGGAGAAGTTGCAGAAGC.................................... 27 0 6 1.33 8 0 1 7 0 0
...............................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAGCAA.................................. 26 0 6 1.17 7 0 0 7 0 0
...........................................................CATATTCGTTCGTCGTAGCGAACCTCC..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................TTTCCCATCCCTTTCGACCAAAGGAG................................................. 26 0 1 1.00 1 1 0 0 0 0
TATTGATACCTACGGCACGCTAAATT................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................CTTGACCTCAAGGGTAAACGCCTTA............................................................................................. 25 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................TGCTTGACCTCAAGGGTAAACGCCT............................................................................................... 25 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................TAAACGCCTTATGGATCCCTCAAAATCCC........................................................................... 29 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................AGAAGTTGCAGAAGCAAAACTC............................. 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................................TGATTCTTGACCTCAAGGGTAAACGCC................................................................................................ 27 1 1 1.00 1 0 1 0 0 0
...............................TTTGGTCTGAACCTACGGCGTAAGT................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
....................TAAATCTAACATTTGGTCTCAACC............................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..........................................................ACATATTCGTTCGTCGTAGCGAACC........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...................CTAAATCTAACATTTGGTCTCAAGCT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
...................................................TAAGTTAACATATTCGTTCGTCGTAGC............................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................................................TAACATATTCGTTCGTCGTAGCGAAC......................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................GCCTTATGGATCCCTCAAAATCCC........................................................................... 24 0 1 1.00 1 1 0 0 0 0
........................................................................................TCAGCAATCATCGGAGCAGATTTCCT......................................................................................................................................... 26 0 6 0.83 5 4 1 0 0 0
........................................................................................TCAGCAATCATCGGAGCAGATTTCCTC........................................................................................................................................ 27 0 6 0.67 4 3 1 0 0 0
...................................................................................................................................................TAAACGCCTTATGGATCCCTCAAAA............................................................................... 25 0 5 0.60 3 3 0 0 0 0
............................................................................................................................................................................................TTCGACCAAAGGAGAAGTTGCAGAA...................................... 25 0 7 0.57 4 0 0 4 0 0
........................................................................................TCAGCAATCATCGGAGCAGATTTC........................................................................................................................................... 24 0 6 0.50 3 1 2 0 0 0
.......ACCTACGGCACGCTAAATCTAAC............................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0
........................................................................................TCAGCAATCATCGGAGCAGATT............................................................................................................................................. 22 0 6 0.33 2 2 0 0 0 0
.........................................................................................CAGCAATCATCGGAGCAGATTTCCT......................................................................................................................................... 25 0 6 0.33 2 2 0 0 0 0
...............................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAGCA................................... 25 0 6 0.33 2 2 0 0 0 0
...................................................................................TCCAATCAGCAATCATCGGAGCAGATT............................................................................................................................................. 27 0 5 0.20 1 0 1 0 0 0
..........................................................................................................................................................CTTTTTGATCCCTCAAAGTCC............................................................................ 21 3 5 0.20 1 0 0 0 1 0
...................................................................................TCCAATCAGCAATCATCGGAGCAGAT.............................................................................................................................................. 26 0 5 0.20 1 0 1 0 0 0
...................................................................................TCCAATCAGCAATCATCGGAGCAG................................................................................................................................................ 24 0 5 0.20 1 0 1 0 0 0
............................................................................................................................................TCAAGGGTAAACGCCTTATGGATCC...................................................................................... 25 0 5 0.20 1 0 1 0 0 0
...........................................................................................................................................................................................TTTCGACCAAAGGAGAAGTTGCAGAAGC.................................... 28 0 6 0.17 1 1 0 0 0 0
........................................................................................TCAGCAATCATCGGAGCAGAT.............................................................................................................................................. 21 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................................................................TTCGACCAAGGGAGAAGTTGCAGAAGC.................................... 27 1 6 0.17 1 0 0 1 0 0
...............................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAG..................................... 23 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................................................................TTCGACCCAAGGAGAAGTTGCAGAAGC.................................... 27 1 6 0.17 1 0 0 1 0 0
............................................................................................................................................................................................TTCGACCAAAGAAGAAGTTGCAGAAGC.................................... 27 1 6 0.17 1 0 1 0 0 0
............................................................................................................................................................................................TGCGACCAAAGGAGAAGTTGCAGAAGC.................................... 27 1 6 0.17 1 0 1 0 0 0
.........................................................................................CAGCAATCATCGGAGCAGATTTCC.......................................................................................................................................... 24 0 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................................AAAAGGAGAAGTTGCAGAAGCAAAA................................ 25 1 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................................................TCGACCAAAGGAGAAGTTGCA......................................... 21 0 7 0.14 1 1 0 0 0 0
...........................................................................................................................................................................................TTTCGACCAAAGGAGAAGTTGCAG........................................ 24 0 7 0.14 1 1 0 0 0 0
...............................................................................................................................................................................................GACCAAAGGAGAAGTTGCA......................................... 19 0 7 0.14 1 0 0 0 0 1
.ATTGATACCTTCGGGACCC....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATAACTATGGATGCCGTGCGATTTAGATTGTAAACCAGAGTTGGATGCCGCATTCAATTGTATAAGCAAGCAGCATCGCTTGGAGGTTAGTCGTTAGTAGCCTCGTCTAAAGGAGGTGCAGGTGCCGGAGTAAGAACTGGAGTTCCCATTTGCGGAATACCTAGGGAGTTTTAGGGAAAGGGTAGGGAAAGCTGGTTTCCTCTTCAACGTCTTCGTTTTGAGATGTTGTAAATATGTTAGTTGCAAGTTTC
********************************************************************************************************.......((....(((.............((....))..............)))...))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 V120
male body		 M056
embryo
 M026
head
 V046
embryo
 V058
head
.......................................................................................................................................................................................AGGGAAAGCTGGTTTCCTCTTCAACGT......................................... 27 0 1 31.00 31 17 1 11 2 0 0 0
........................................................................................................................................................................................................................TTTGAGATGTTGTAAATATGTTAGTT......... 26 0 1 25.00 25 16 5 1 3 0 0 0
..................................CCAGAGTTGGATGCCGCATTCAATT................................................................................................................................................................................................ 25 0 1 22.00 22 0 22 0 0 0 0 0
.........................................................................CATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 25 0 1 17.00 17 13 0 2 1 0 1 0
.......................................................................AGCATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 27 0 1 17.00 17 5 11 0 1 0 0 0
...................................CAGAGTTGGATGCCGCATTCAATTGTAT............................................................................................................................................................................................ 28 0 1 15.00 15 2 12 1 0 0 0 0
........................................................................GCATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 26 0 1 13.00 13 11 0 1 1 0 0 0
...........................................................................TCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 23 0 1 11.00 11 6 0 2 3 0 0 0
..........................................................................ATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 24 0 1 9.00 9 7 0 0 2 0 0 0
..AACTATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 27 0 2 8.00 16 5 0 11 0 0 0 0
....CTATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 25 0 2 6.50 13 6 0 1 4 1 1 0
....................................AGAGTTGGATGCCGCATTCAATTGT.............................................................................................................................................................................................. 25 0 1 6.00 6 0 6 0 0 0 0 0
........................................................................................................................................................................................GGGAAAGCTGGTTTCCTCTTCAACGT......................................... 26 0 1 5.00 5 4 0 0 1 0 0 0
................................................................................................................................AGTAAGAACTGGAGTTCCCATTTGC.................................................................................................. 25 0 1 4.00 4 0 4 0 0 0 0 0
.....................................................................................................................GCAGGTGCCGGAGTAAGAACTGGAGT............................................................................................................ 26 0 1 4.00 4 3 0 0 1 0 0 0
..........................................................................................................CTAAAGGAGGTGCAGGTGCCGGAGT........................................................................................................................ 25 0 1 4.00 4 2 1 0 1 0 0 0
.........................................................................................................................................................................................GGAAAGCTGGTTTCCTCTTCAACGT......................................... 25 0 1 4.00 4 4 0 0 0 0 0 0
...................................................ATTCAATTGTATAAGCAA...................................................................................................................................................................................... 18 0 1 4.00 4 0 4 0 0 0 0 0
..................................................................................GAGGTTAGTCGTTAGTAGCCTCGTCT............................................................................................................................................... 26 0 1 3.00 3 0 3 0 0 0 0 0
..........................................................................................................................................................................................................................TGAGATGTTGTAAATATGTTAGTT......... 24 0 1 3.00 3 2 0 1 0 0 0 0
..AACTATGGATGCCGTGCGATTTAGAT............................................................................................................................................................................................................................... 26 0 2 3.00 6 1 0 5 0 0 0 0
......................................................................CAGCATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 28 0 1 3.00 3 2 0 0 1 0 0 0
.........................................................................CATCGCTTGGAGGTTAGTCGTTAG.......................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGAGATGTTGTAAATATGTTAGTT......... 25 0 1 3.00 3 2 0 1 0 0 0 0
.................................................................................................................AGGTGCAGGTGCCGGAGTAAGAAC.................................................................................................................. 24 0 1 3.00 3 0 3 0 0 0 0 0
...............................................................................................................................................................................................CTGGTTTCCTCTTCAACGTCTTCGT................................... 25 0 6 2.83 17 12 0 0 5 0 0 0
..................................................................................................................................................................................AGGGTAGGGAAAGCTGGTTTCCT.................................................. 23 0 1 2.00 2 1 0 1 0 0 0 0
..............................................GCCGCATTCAATTGTATAAGCAA...................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................AGCATCGCTTGGAGGTTAGTCGTTAG.......................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................CGCTTGGAGGTTAGTCGTTATT......................................................................................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0
.......................................................................................................................................................................................AGGGAAAGCTGGTTTCCTCTTCAACTT......................................... 27 1 1 2.00 2 0 0 0 2 0 0 0
..........................................................................................................................................................................................GAAAGCTGGTTTCCTCTTCAACGTCT....................................... 26 0 1 2.00 2 1 0 1 0 0 0 0
......ATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 23 0 2 2.00 4 3 0 1 0 0 0 0
.....................................................TCAATTGTATAAGCAAGCAGCATCGCTT.......................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0
...ACTATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 26 0 2 2.00 4 3 0 1 0 0 0 0
.........................................................................CATCGCTTGGAGGTTAGTCGTTATT......................................................................................................................................................... 25 1 1 2.00 2 0 0 0 2 0 0 0
................................................................................................................GAGGTGCAGGTGCCGGAGTAAGAACT................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
......ATGGATGCCGTGCGATTTAGATTGT............................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................CGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................GGAAAGGGTAGGGAAAGCTGGTTTCCT.................................................. 27 0 1 2.00 2 1 0 1 0 0 0 0
.....................................................TCAATTGTATCAGCAAGCAGCATCGCTT.......................................................................................................................................................................... 28 1 1 2.00 2 0 2 0 0 0 0 0
......................TTAGATTGTAAACCAGAGTTGGAT............................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 0 2 0 0 0
...................................................................................................................................................................................GGGTAGGGAAAGCTGGTTTC.................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0
....CTATGGATGCCGTGCGATTTAGAGT.............................................................................................................................................................................................................................. 25 1 2 1.50 3 0 0 0 3 0 0 0
......................................................................CAGCATCGCTTGGAGGTTAGTCGTTAG.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................TCAATTGTATAAGCAAGCAGCATCGATT.......................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................GGAAAGCTGGTTTCCTCTTCAACGTCTT...................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
......ATGGATGCCGTGCGATGTAGATTGT............................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................TACCTAGGGAGTTTTAGGGAAAGGG..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............CGTGCGATTTAGATTGTAAACCAGAGT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................ATCGCTTGGAGGTTAGTCGTTAGTAG....................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................GGGAAAGGGTAGGGAAAGCTGGTTTC.................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................TTAGCATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 29 2 1 1.00 1 0 0 1 0 0 0 0
............................................ATGCCGCATTCAATTGTA............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................AGCATCGCTTGGAGTTTAGTCGTTAGT......................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................TCGCTTGGAGGTTACTCGTTAGT......................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................GCCGCATTCAATTGTGTAAGCAAG..................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................CCAGAGTTGGAGGCCGCATTCAATT................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0
..............................................GCCGCATTCAATTGTATAAGCAAG..................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................CAGCATCGCTTGGAGGTTAGTCTTTAG.......................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
..................................CCAGAGTTGGATGCCGCATTAAATT................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................GCATCGCTTGGAGGTTAGTCGTTAGTC........................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................GGATCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................TCAATTGTATCCGCAAGCAGCATCGCTT.......................................................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................TGCCGGAGTAAGAACTGGAGTTCCC........................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0
..............................................GCCGCATTCAATTGTATAAGCA....................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................CGGAGTAAGAACTGGAGTTCCCATTT.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AGGGAAAGCTGGTTTCCTCTTCAACGTCT....................................... 29 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................GGGAAAGCTGATTTCCTCTTCAACGT......................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................GGTGCAGGTGCCGGAGTAAGAACT................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGAGATGTTGTAAATATGTTAGT.......... 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................CGCTTGGAGGTTAGTCGTTAGTA........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................................GGTAGGGAAAGCTGGTTTCCT.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TGAGATGTTGTAAATATGTTAGTTGCA...... 27 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................GAAAGCTGGTTTCCTATTCAACGT......................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................AGGTGCCGGTGCCGGAGTAAGAAC.................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................AGGGAAAGCTGGTTTCCTGTTCAACGT......................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
.............CCGTGCGATTTAGATTGTAAACCAGAG................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................AAGAACTGGAGTTCCCAGTTGCGGAA.............................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GTGCCGGAGTAAGAACTGGAGTTCCCAT...................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................CGTCTTCGTTTTGAGATGTTGTAAAT.................. 26 0 1 1.00 1 1 0 0 0 0 0 0
................................................CGCATTCAATTGTATAAGCAAGCAGCAT............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................GCCGGAGTAAGAACTGGAGTTCCCAT...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................GTAAACCAGAGTTGGATGCCGCA....................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.............................................TGCCGCATTCAATTGTATAAGCAAG..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................TGGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TTAGGGAAAGGGTAGGGAAAGCTGGT....................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................GAACTGGAGTTCCCATTTGCGGAATAC........................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................................TTTGAGATGTTGTAAATGTGTTAGTT......... 26 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................CAGGTGCCGGAGTAAGAACTGGAGT............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................GCATCGCTTGGAGGTTAATCGTTAGT......................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
......................................AGTTGGATGCCGCATTCAATTGTAT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................CCGGAGTAAGAACTGGAGTTCCCAT...................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................GAGATGTTGTAAATATGTTAGTTG........ 24 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................GAGGTGCAGGTGCCGGAG......................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................CATCGCTTGGAGGTTAATCGTTAGT......................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................CTCGCTTGGAGGTTAGTCGTTAGT......................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................GTGCAGGTGCCGGAGTAAGAACT................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................AGCATCGCTTGGAGGTTGGTCGTTAGT......................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................TCGCTTGGAGGTTAGTCATTAGT......................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................AGGGAAAGCTGGTTTCCTCTTCAACG.......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
ATAACTATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................GCCGGAGTAAGAACTGGAGTTCCCATTT.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................TCAATTGTATACGCAAGCAGCATCGCTT.......................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TTTGAGATGTTGTAAATATGTTAGTTG........ 27 0 1 1.00 1 1 0 0 0 0 0 0
..................................CCCGAGTTGGATGCCGCATTCAATT................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................GCAGCATCGCTTGGAGGTTAGTCGT............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GTGCCGGAGTAAGAACTGGAGTTCCC........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................TAAGGGTAGGGAAAGCTGGTTT..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................AGGGAAAGGGTAGGGAAAGCTGGTT...................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................GGGATAGCTGGTTTCCTCTTCAACGT......................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................AAAGGGTAGGGAAAGCTGGTTTC.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................CCAGAGTTGGATGCCGCATTCAATAT............................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................CCGGAGTAAGAACTGGAGTTCCCATTT.................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................GAAAGCTGGTTTCCTCTTCAACGT......................................... 24 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................AAGGGTAGGGAAAGCTGGTTTCCT.................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................GGAAAGGGTAGGGAAAGCTGGTTTC.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..............................................GCCGCATTCAATTGTATAAGCAAGCAGC................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................TCCCATTTGCGGAATACCTAGGGAGT.................................................................................. 26 0 5 0.80 4 4 0 0 0 0 0 0
............................................................................................................................................................................................AAGCTGGTTTCCTCTTCAACGTCTT...................................... 25 0 7 0.71 5 5 0 0 0 0 0 0
.................................................................................................................................................CCATTTGCGGAATACCTAGGGAGTTTT............................................................................... 27 0 5 0.60 3 0 0 1 2 0 0 0
...........................................................................................................................................................................................AAAGCTGGTTTCCTCTTCAACGTCTT...................................... 26 0 7 0.57 4 3 0 0 0 1 0 0
..TACTATGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0
...................................................ATTCTATTGTATAAGCAA...................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0
....CTATGGGTGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0
....CTAAGGATTCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 25 2 2 0.50 1 0 0 0 1 0 0 0
..AACTATGGAGGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0 0 0 0
...................................................CTTCAATTGTATAAGCAA...................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0
......ATGGATGCCGTGCGATTTAGATTG............................................................................................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................CTCGTCTAAAGTATGCGCAGGT................................................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 0 1
........GGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................GAGGTTAGTCGTCAGTAGCCTCGTCT............................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0
..AACTACGGATGCCGTGCGATTTAGATT.............................................................................................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................................................TTGCGGAATACCTAGGGAGTTTT............................................................................... 23 0 5 0.40 2 1 0 1 0 0 0 0
.................................................................................................................................................CCATTTGCGGAATACCTAGGGAGTTT................................................................................ 26 0 5 0.40 2 0 0 1 1 0 0 0
.............................................................................................................................................................................................AGCTGGTTTCCTCTTCAACGTCTTCGT................................... 27 0 6 0.33 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................CTGGTTTCCTCTTCAACGTCTTCGTTT................................. 27 0 6 0.33 2 2 0 0 0 0 0 0
......................................................................................................................................................................AGTTGTAGTGAAAGGGTAG.................................................................. 19 2 3 0.33 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTTCCTCTTCAAGGTCTTCGT................................... 25 1 6 0.33 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................GCTGGTTTCCTCTTCAACGTCTTCGT................................... 26 0 6 0.33 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................GGTTTCCTCTTCAACGTCTTCGT................................... 23 0 6 0.33 2 2 0 0 0 0 0 0
..........................................................................................................................................GGAGTTCCCATTTGCGGAATACCT......................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................GGAGTTCCCATTTGCGGCATACCTAG....................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................................................CCCATTTGCGGAATACCTAGGGAGTTTT............................................................................... 28 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................................................TTTGCGGAATACCTAGGGAGTTTT............................................................................... 24 0 5 0.20 1 0 0 0 0 1 0 0
...................................................................................................................................................ATTGGCGGAATACCTAAGGAGTTTT............................................................................... 25 2 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................AGTTCCCATTTGCGGAATACCT......................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................CCCATTTGCGGAATACCTAGGGAGT.................................................................................. 25 0 5 0.20 1 1 0 0 0 0 0 0
...............................................................................................................................................TCCCATTTGCGGAATACCTAGGGAGTTT................................................................................ 28 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................CATTTGCGGAATACCTAGGGAGTTT................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TGTTTTCCTCTTCAACGTCTTCGTT.................................. 25 1 6 0.17 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................GATGGTTTCCTCTTCAACGTCTTCG.................................... 25 1 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTCTTCAACGTCTTCGT................................... 20 0 6 0.17 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TGGTTTCCTCTTCAACGTCTTCGT................................... 24 0 6 0.17 1 0 0 0 1 0 0 0
......................................................................................TTAGTCGTTAGTAGCCTCGTCTAAAG........................................................................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TGGTTTCCTCTTCAGCGTCTTCG.................................... 23 1 6 0.17 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................CTGGTTTCCTCTTCAACGTCTTCGTT.................................. 26 0 6 0.17 1 1 0 0 0 0 0 0
........GGATGCCGTGCGATTTAGATTGAA........................................................................................................................................................................................................................... 24 1 6 0.17 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................GCTGGTTTCCTCTTCAACGTCTTCG.................................... 25 0 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CCTCTTCAACGTCTTCGTTCTG............................... 22 1 6 0.17 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TCCTCTTCAACGTCTTCGT................................... 19 0 6 0.17 1 1 0 0 0 0 0 0
.......TGGATGCCGTGCGATTTAGATTGAA........................................................................................................................................................................................................................... 25 1 6 0.17 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................TTCCTCTTCAACGTCTTCGTTTT................................ 23 0 6 0.17 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................GCTGGTTTCCTCTTCAACGTCTT...................................... 23 0 7 0.14 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................ACAGCTGGTTTCCTCTTCAACGTCTT...................................... 26 1 7 0.14 1 0 0 0 0 0 0 1
........................................................................................AGTACTTAGTAGCCTCGTC................................................................................................................................................ 19 2 8 0.13 1 1 0 0 0 0 0 0
.......................................................................................TAGTACTTAGTAGCCTCGTCG............................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0
......................................................................................ATAGTACTTAGTAGCCTCGTC................................................................................................................................................ 21 3 8 0.13 1 1 0 0 0 0 0 0
................TGCGATGTAGAATGTAAACA....................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0
.......................................................................................TAGTACTTAGTAGCCTCGT................................................................................................................................................. 19 2 10 0.10 1 1 0 0 0 0 0 0
............................................................................................................................................................................AGGGAAAGGGTTGGGAAC............................................................. 18 2 13 0.08 1 1 0 0 0 0 0 0
.....................................GAGTTGGCGGCCGCATTGA................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:719216-719466 - dya_420 TATTGATACCTACGGCACGCTAA-----ATCTAACA------TTTGGTCTCAACCTACGGCGTAAGTTAACATATTCGTTCGTCGTAGCGAACCTCCAATCAGCAATCATCGGAGCAGATTTCCTCCACGTCCACGGCCTCATTCTTGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAATCCCTTTCCCATCCCTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACATTT------ATACAATCA---------------------ACGTTC-AAAG
droEre2 scaffold_4788:12463-12702 + AATTGATACCTACGGCACGCAAA-----ATCTAACT------TTTGGTCTCAACCTACTGCGTAAGTTCACCTGATCGTTCGTCGTTGCGAACGTCCAATCAGCAAGCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTTTTTCGACCGAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTC------CTACAATCA---------------------GCGTGC-AAAG
droSec2 scaffold_2062:4678-4917 - AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTCAACCTACGGCGTAACTTCACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTGTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAG
droSim2 node_14086:134-373 - AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTCAACCTACGGCGTAACTTTACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCATTACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTGTTTCGACCAAAGGGGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAG
dm3 chrUextra:10006192-10006435 + AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTTAACTTACGGCGTAACTTCACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAATCC--CTCG-----CCGTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAG
droBia1 scf7180000302386:306226-306470 - CATTCACACCTACGGCAGCGTGG-----TGGTTGACCTGAACCTTGACCTGAACCTGAACCGTTCCTTCATGTGACCTTTTATCGCAGCTGACACCGAGTTAGCTATCATAGGCGCCGATTTCTTGTCCCATTTTAACTTGCTTGTCGACATCAAGGGCAAAAAACTGATTGATGCAAACACCA-----------ATTTGTCGAACCCGGTTTTGATTTCGGACGCGAAACATAACTCTGTGT------CTACCATTA---------------------TTAC-T-AAAT
droTak1 scf7180000412688:44443-44678 + AATTGATACCTACGAGACTTTAA-----ATCTGACG------TTTGGTCTTAACCTACAACGCAAATTTAGCTTGCAATTCGTCGTCGCTAACGTCCAATCAGCAATCATTGGTGCGGATTTTCTTACCTATCATGGTCTGATCATTGACCTCAAGGGTAAACGCCTCATTGATTCTTTAACGT-----------CCACATCAACAAAAGGAGAGCTAACGGAAACAAAAGTCTATAACATTT------CTACAATCA---------------------ACTCC-----A
droEle1 scf7180000489069:46516-46749 + CATCCACACCTACGGAAGCATGC-----CAGTTGAC------ATGAACATTGGGCTACGGCGTAACCTTATCTGGCCTTTTATCGTTGCTGACACCGAAGTAGCTATAATTGGTGCAGACTTTCTGTCCCACTTTCATCTCCTCGTCGACGTAAAGGGCCAAAAACTCATCGATGCGAACACCA-----------ATCTATCGACACCAGCTTGTCTTTCCAACGCTGTACATCACTCTGTGT------CTAC---------------------------CATTC-AAGG
droRho1 scf7180000778220:43570-43803 + CATCCACACCTACGGCAGCGTAC-----TGGTTGAC------CTCAACTTTGGACTTCGCCGTTCTTTCATGTGGCCTTTCATCGTAGCTGACACCGAGTTAGCTATCATAGGCGCCGATTTCTTATCCCATTTCA-ACTGCTCGTGGACGTTAAAGGCAAAAAACTAATTGATGCAAACACCA-----------ACTTGTCGAGCCCGGCTTTGCTTTCGAACGCGAAACATTACTCTGTGT------CGACCATTA---------------------ATGG------T
droFic1 scf7180000453815:1110-1353 - CATTCATACTTATGGAAAGTACG-----TAACTCAG------CTGAACTTGGGTCTCCGCCGAAACTACACCTGGCCATTCATTATCGCTGATGTGCACACAGCTATTATTGGGGCAGACTTCTTGAGCAACTTTCAATTGCTCATCGATCTTAAAAATCAAAGATTAATTGACTCGCTTACTG-----------GTCTTTCAACGCCCGCATGTCTAGCACAAGCGAAACACATATCAGTTT------CCACAGTGC-----------------AGCGTGTTTC-GAAT
droKik1 scf7180000299059:5884-6099 + AATTCAAACTTATGGAACCACTC-----GCCTTACG------CTGGATCTCGGTCTACGTCGCCCTTTCACATGGATTTTTACCATAGCCGACACAAAAT-CCCAATCATTGGTTCAGACTTCTTGCAGCACTTTAATCTACTGGTCGACCTTAAAAACTCAAGATTAGTCGACGTCGAAACAC-----------GCCTATCATG-CTGTGGAA-------------------TG--TTTAGC------CAACAATCA---------------------ACCT-C-GGAG
droAna3 scaffold_13333:211758-211982 + AATAAAAACATACGGCACCATCC-----GCCTGACA------CTGGACCTAGGACTACGTCGTCCTTACACTTGGAACTTTGTTATTGCTGATACCAATACTCCAATCATTGGATCCGATTTTCTACACCACTACAACCTCCTTTTCAACATCAAGGAGGCTAAGTTAGTTGATGCCAAAACAC-----------GCTTGAC-----------ATGTTGTGGTATCCACACACATCAAAATTC------ATCAA-------------------------TTATTA-AAAC
droBip1 scf7180000396398:2539-2655 + AATACAAACCTATGGAGAAAAAC-----GCATAGCA------TTGTCACTGGGATTGCGACGAAACTTCGTGTGGACTTTCGTGATAGCTGACGTCAACTGCGCTATCATCGGATCCGACTTTCTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_839:3159-3398 + CATTCGAACCTTCGGAAATCAGG-----ACCTCGAA------CTCGACCTGGACCTGGATCGTTCGTTTAAATGGTCATTTGTCATCGCTGATGTACAAACCGCAATTATTGGCGCTGACTTCCTATCACAGTTCCATTTGCTTATTGACATCAAGAAACAACGTCTCACCAACGGCACAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------TTGTTTCTCCAA------ATATAAACAAAACGCATCAAGGCAAGGACC-GACA
droPer2 scaffold_51:221717-221956 + CATTCGAACCTTCGGAAATCAGG-----ACCTCGAA------CTCGACCTGGACCTGGATCGTTCGTTTAAATGGTCATTTGTCATCGCTGATGTACAAACCGCAATTATTGGCGCTGACTTCCTATCACAGTTCCATTTGCTTATTGACATCAAGAAACAACGTCTCACCAACGGCACAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------TTGTTTCTCCAA------ATATAAACAAAACGCATCAAGGCAAGGACC-GACA
droWil2 scf2_1100000004852:407267-407504 + CATGAACACGTACGGCAAAGACGCAATAATGCAGAG------CTCAATCTTGGCCTACACCGCAGTTTCACCTGGCCCTTTATCAACGCAGATGTCCAAGTAGCCATCATTGGAGCTGACTTTCTAACCAAAAACGAACTAATTATTGATTTGGCAAATAAATTTCTCATTGATTCTATCACAG-----------GTCTATCAACGCCTGGATGCTTAGCTGGAACGTGACAACATTCCATAT-------------CA---------------------ACAGTA-GAAG
droVir3 scaffold_12788:86076-86297 - CATTAAAACATATGGTTTAATTT-----GCCTCACT------CTCGACCTTGGGTTACGTCGTCCATTCACATGGAATTTTATCATTACTGACACAAAATTTCCAATCATTGGATTAGACTTTCTACAAAACTATAATCTTATTGTCAATATCAAAGATGGTAAATTAATCAACGCTCAAACTT-----------TGATAAC--------------------ACGTCAAGGTCTGCAGCCTTC----GATTATCATCA---------------------ACATTA-AAAA
droMoj3 scaffold_6482:2359590-2359815 + AATAACTACGTACGGCACGACTC-----GCCTTACA------CTCGACCTTGGCTTGCGTCGTCCCTTCACGTGGAACTTCACCATAGCAGACACTACAATATCAATCCTATGATCAGACTTCATACAGCACTTCAACTTGCTCGTCGACATTAAGCGAGGAAAATTAATCGACGCGCAAACAC-----------TACTTGC-ACGTA-GTGGCATC--------------------TGCAGTCTACAA------TCGCTAACCA--------------CCGTCAAAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TATTGATACCTACGGCACGCTAA-----ATCTAACA------TTTGGTCTCAACCTACGGCGTAAGTTAACATATTCGTTCGTCGTAGCGAACCTCCAATCAGCAATCATCGGAGCAGATTTCCTCCACGTCCACGGCCTCATTCTTGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAATCCCTTTCCCATCCCTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACATTT------ATACAATCA---------------------ACGTTC-AAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................TCCACGGCCTCATTCTTGACCTCAAGGG....................................................................................................................................2814.00404000000000
...................CTAA-----ATCTAACA------TTTGGTCTCAACC...........................................................................................................................................................................................................................................2513.00303000000000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2562.6716014200000000
...................CTAA-----ATCTAACA------TTTGGTCTCAAC............................................................................................................................................................................................................................................2412.00202000000000
............................................................................................................................TCCACGTCCACGGCCTCATTCTTGACC...........................................................................................................................................2712.00202000000000
.......................................................................................................................................................................................................TTCGACCAAAGGAGAAGTTGCAGAAGC................................................................2761.33800100000007
..........................................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAGCAA..............................................................2661.17700000000007
......................................................................CATATTCGTTCGTCGTAGCGAACCTCC.................................................................................................................................................................................................2711.00101000000000
...........................................................................................................................................................................................TTTCCCATCCCTTTCGACCAAAGGAG.............................................................................2611.00101000000000
TATTGATACCTACGGCACGCTAA-----ATT...................................................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................................................CTTGACCTCAAGGGTAAACGCCTTA.........................................................................................................................2511.00101000000000
..............................................................................................................................................................TAAACGCCTTATGGATCCCTCAAAATCCC.......................................................................................................2911.00101000000000
...................................................................................................................................................................................................................AGAAGTTGCAGAAGCAAAACTC.........................................................2211.00101000000000
....................TAA-----ATCTAACA------TTTGGTCTCAACC...........................................................................................................................................................................................................................................2411.00101000000000
.....................................................................ACATATTCGTTCGTCGTAGCGAACC....................................................................................................................................................................................................2511.00101000000000
..............................................................TAAGTTAACATATTCGTTCGTCGTAGC.........................................................................................................................................................................................................2711.00101000000000
...................................................................TAACATATTCGTTCGTCGTAGCGAAC.....................................................................................................................................................................................................2611.00101000000000
...................................................................................................................................................................GCCTTATGGATCCCTCAAAATCCC.......................................................................................................2411.00101000000000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................2660.83504100000000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................2760.67403100000000
..............................................................................................................................................................TAAACGCCTTATGGATCCCTCAAAA...........................................................................................................2550.60303000000000
.......................................................................................................................................................................................................TTCGACCAAAGGAGAAGTTGCAGAA..................................................................2570.57400000000004
...................................................................................................TCAGCAATCATCGGAGCAGATTTC.......................................................................................................................................................................2460.50301200000000
.......ACCTACGGCACGCTAA-----ATCTAAC...............................................................................................................................................................................................................................................................2320.50101000000000
...................................................................................................TCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2260.33202000000000
....................................................................................................CAGCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................2560.33202000000000
..........................................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAGCA...............................................................2560.33202000000000
..............................................................................................TCCAATCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2750.20100100000000
..............................................................................................TCCAATCAGCAATCATCGGAGCAGAT..........................................................................................................................................................................2650.20100100000000
..............................................................................................TCCAATCAGCAATCATCGGAGCAG............................................................................................................................................................................2450.20100100000000
.......................................................................................................................................................TCAAGGGTAAACGCCTTATGGATCC..................................................................................................................2550.20100100000000
......................................................................................................................................................................................................TTTCGACCAAAGGAGAAGTTGCAGAAGC................................................................2860.17101000000000
...................................................................................................TCAGCAATCATCGGAGCAGAT..........................................................................................................................................................................2160.17101000000000
..........................................................................................................................................................................................................GACCAAAGGAGAAGTTGCAGAAG.................................................................2360.17101000000000
....................................................................................................CAGCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2460.17101000000000
........................................................................................................................................................................................................TCGACCAAAGGAGAAGTTGCA.....................................................................2170.14101000000000
......................................................................................................................................................................................................TTTCGACCAAAGGAGAAGTTGCAG....................................................................2470.14101000000000
..........................................................................................................................................................................................................GACCAAAGGAGAAGTTGCA.....................................................................1970.14100000010000
droEre2
AATTGATACCTACGGCACGCAAA-----ATCTAACT------TTTGGTCTCAACCTACTGCGTAAGTTCACCTGATCGTTCGTCGTTGCGAACGTCCAATCAGCAAGCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTTTTTCGACCGAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTC------CTACAATCA---------------------GCGTGC-AAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................TCACGCACCACGGCCTCATCCTCGACC...........................................................................................................................................2763.832300000023
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCCT...........................................................................................................................2843.751500000015
.......................................................................................................................................................TCAAGGGTAAACGCCTTATGGATCCCTC...............................................................................................................2820.5011000000
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2740.5020000002
................................................................................CGTCGTTGCGAACGTCCAATCAGC..........................................................................................................................................................................................2430.3310100000
.............................................................................................................TCGGAGCAGATTTCCTCACGCACCACG..........................................................................................................................................................2780.2522000000
droSec2
AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTCAACCTACGGCGTAACTTCACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTGTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAGT.........................................................................26710.297264143
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAG..........................................................................2578.4359175334
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................2594.564138102
.....................................................................................................AGCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................2493.333021090
.....................................................................ACCTGGTCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................2793.112810225
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAA...........................................................................2483.002416233
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGA............................................................................2382.502013043
.....................................................................................................AGCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2392.442217131
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................2692.001818000
...................................T------TTTGGTCTCAACCTACGGCGTAAC................................................................................................................................................................................................................................2581.75147232
...................................T------TTTGGTCTCAACCTACGGCGTAACT...............................................................................................................................................................................................................................2681.501211100
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACGTT................................................2581.25107030
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAG.............................................................................2281.25107030
...................................................................TCACCTGGTCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................2991.11102071
..................................................................TTCACCTGGTCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................3091.0090072
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2780.7566000
...................................T------TTTGGTCTCAACCTACGGCGTA..................................................................................................................................................................................................................................2380.7564101
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGAAGT.........................................................................2570.7155000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAGA.........................................................................2670.7153020
...................................................................TCACCTGGTCGTTCGTCGTTGCGAAC.....................................................................................................................................................................................................2690.6764110
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCAC..................................................................................................................................................................2790.6766000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACGT.................................................2480.6353011
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAA..........................................................................2580.6351040
...................................T------TTTGGTCTCAACCTACGGCGTAA.................................................................................................................................................................................................................................2480.6355000
..................................................................TTCACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2690.5652021
...................................................................TCACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2590.5652021
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCCT...........................................................................................................................2880.5044000
...................................T------TTTGGTCTCAACCTACGGCGT...................................................................................................................................................................................................................................2280.5043010
........................................................................TGGTCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................2490.4440040
.....................................................................................................AGCAATCATCGGAGCAGATTTC.......................................................................................................................................................................2290.4444000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAGTT........................................................................2770.4332100
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGAA...........................................................................2380.3833000
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGA............................................................................2280.3833000
..........................................................................................................................................CTCATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2880.3833000
...................................................................TCACCTGGTCGTTCGTCGTTGCGAACG....................................................................................................................................................................................................2790.3332001
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCACGC................................................................................................................................................................2990.3333000
....................................................................CACCTGGTCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................2890.3332010
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGAAG..........................................................................2470.2922000
..................................................................................................................................ACCACGGCCTCATCCTCGACCTCAAGGG....................................................................................................................................28110.2733000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACG..................................................2380.2522000
......TACCTACGGCACGCTAA-----ATCT..................................................................................................................................................................................................................................................................2180.2522000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAT...........................................................................2480.2522000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGA..............................................................................2180.2522000
..............................................................................................................................................TCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2480.2521010
..............................................................................................................................................................TAAACGCCTTATGGATCCCTCA..............................................................................................................2280.2522000
..................................................................TTCACCTGGTCGTTCGTCGTTGCGAACG....................................................................................................................................................................................................2890.2222000
......................................................................................................GCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................2490.2222000
...................................................................TCACCTGGTCGTTCGTCGTTGCGAACGT...................................................................................................................................................................................................2890.2221001
....................................................................CACCTGGTCGTTCGTCGTTGCGAACG....................................................................................................................................................................................................2690.2222000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCT...................................................................................................................................................................2690.2222000
......................................................................................................GCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................2390.2222000
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGC.............................................................................................................................2690.2222000
.....................................................................................................................................ACGGCCTCATCCTCGACCTCAAGGGT...................................................................................................................................26100.2020011
...............................................................................................................................CGCACCACGGCCTCATCCTCGACCTC.........................................................................................................................................26110.1820020
....................................................................................................................................CACGGCCTCATCCTCGACCTCAAGG.....................................................................................................................................25110.1822000
..............................................................................................................................ACGCACCACGGCCTCATCCTCGACCTC.........................................................................................................................................27110.1822000
..................................................................................................................................ACCACGGCCTCATCCTCGACCTCAAGG.....................................................................................................................................27110.1822000
..............................................................................................................................ACGCACCACGGCCTCATCCTCGACC...........................................................................................................................................25110.1822000
..............................................................................................................................ACGCACCACGGCCTCATCCTCGAC............................................................................................................................................24110.1822000
....................................................................................................................................CACGGCCTCATCCTCGACCTCAAGGG....................................................................................................................................26110.1822000
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGAAGTT........................................................................2670.1411000
.............................................................................................................................................................................TCCCTCAAAAG-----------CTGTTTCGACCAAAGG...............................................................................2770.1411000
.............................................................................................................................................................................TCCCTCAAAAG-----------CTGTTTCGACC....................................................................................2270.1411000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAGAG........................................................................2770.1411000
..................................................................................................................................................................................................................................................T------CTACAATCA---------------------ACGTGC-AAAG2070.1410001
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGC............................................................................2380.1310010
......TACCTACGGCACGCTAA-----ATCTAAC...............................................................................................................................................................................................................................................................2480.1311000
...................................T------TTTGGTCTCAACCTACGGCGTAACA...............................................................................................................................................................................................................................2680.1311000
.....................................................................................................................................................................................................GTTTCGACCAAAGGAGAAG..........................................................................1980.1311000
............................................................................................................................................CATCCTCGACCTCAAGGGTAAACGCCT...........................................................................................................................2780.1311000
...................................T------TTTGGTCTCAACCTACGGCGTAACTTC.............................................................................................................................................................................................................................2880.1311000
..........................................................................................................................................................................................................................GCAGAAGCAAAACTCTACAACGT.................................................2380.1310010
......TACCTACGGCACGCTAA-----ATC...................................................................................................................................................................................................................................................................2080.1310010
..........................................TTTGGTCTCAACCTACGGCGTAAC................................................................................................................................................................................................................................2480.1311000
..........................................TTTGGTCTCAACCTACGGCG....................................................................................................................................................................................................................................2080.1311000
...................................T------TTTGGTCTCAACCTACGGCGTAACTT..............................................................................................................................................................................................................................2780.1311000
...................................T------TTTGGTCTCAACCTACGGCG....................................................................................................................................................................................................................................2180.1311000
...TGATACCTACGGCACGCTAA-----......................................................................................................................................................................................................................................................................2080.1310001
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAGC.........................................................................2680.1311000
..........................................TTTGGTCTCAACCTACGGCGTAACTT..............................................................................................................................................................................................................................2680.1311000
.............................TCTAACT------TTTGGTCTCAACCTACGGC.....................................................................................................................................................................................................................................2680.1311000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACGA.................................................2480.1311000
.................................................................................................................................................................................................................................CAAAACTCTACAACGTTA------.........................................1880.1311000
..........................................................................................................................................................................................................................GCAGAAGCAAAACTCTACAACGTTA------.........................................2580.1311000
.........................................................................................................................................................................TGGATCCCTCAAAAG-----------CTGTTT.........................................................................................2180.1311000
...................................T------TTTGGTCTCAACCTACGGCGTAT.................................................................................................................................................................................................................................2480.1310100
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAGAAAA.........................................................................2680.1310001
............................................TGGTCTCAACCTACGGCGTAACT...............................................................................................................................................................................................................................2380.1311000
.............................................................................................................................................ATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2580.1311000
......................................................................................................................................................CTCAAGGGTAAACGCCTTATGGATCCCTC...............................................................................................................2980.1311000
...........................................TTGGTCTCAACCTACGGCGTAACT...............................................................................................................................................................................................................................2480.1311000
..........................................TTTGGTCTCAACCTACGGCGTAT.................................................................................................................................................................................................................................2380.1311000
.....................................................................................................................................................................................AAG-----------CTGTTTCGACCAAAGGAGAAC..........................................................................2480.1311000
......TACCTACGGCACGCTAA-----ATCTAA................................................................................................................................................................................................................................................................2380.1311000
.......................................................................................................................................................TCAAGGGTAAACGCCTTATGGATCCC.................................................................................................................2680.1311000
..............................................................................................................................................TCCTCGACCTCAAGGGTAAACGCCTT..........................................................................................................................2680.1311000
.......................................................................................................CAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................2290.1111000
.....................................................................ACCTGGTCGTTCGTCGTTGCGAACGT...................................................................................................................................................................................................2690.1110010
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCACC.................................................................................................................................................................2890.1111000
................................................................ACTTCACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2790.1111000
...................................................................TCACCTGGTCGTTCGTCGTTGCGAACGTA..................................................................................................................................................................................................2990.1111000
.......................................................TACGGCGTAACTTCACCTGGTCGTT..................................................................................................................................................................................................................2590.1111000
.........................................................CGGCGTAACTTCACCTGGTCGT...................................................................................................................................................................................................................2290.1111000
........................................................................................................AATCATCGGAGCAGATTTCCTCACGCA...............................................................................................................................................................2790.1110010
......................................................................................................GCAATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................2590.1111000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTA....................................................................................................................................................................2590.1111000
.........................................................................GGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................1990.1111000
...............................................................................................................................................................AAACGCCTTATGGATCCCTC...............................................................................................................2090.1111000
....................................................................CACCTGGTCGTTCGTCGTTGCGAAC.....................................................................................................................................................................................................2590.1110100
....................................................................CACCTGGTCGTTCGTCGTTGCGAACGT...................................................................................................................................................................................................2790.1111000
...............................................................................................................................................................AAACGCCTTATGGATCCCT................................................................................................................1990.1111000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................2890.1111000
...............................................................................TCGTCGTTGCGAACGTCCAATCAGCAAT.......................................................................................................................................................................................2890.1111000
...................................................................................................................................................................................................CTGTTTCGACCAAAGGAG.............................................................................1890.1111000
...................................................................TCACCTGGTCGTTCGTCGTTGC.........................................................................................................................................................................................................2290.1111000
..........................................................................................................................................CTCATCCTCGACCTCAAGGGTAAACGC.............................................................................................................................2790.1111000
.....................................................................ACCTGGTCGTTCGTCGTTGCGAAC.....................................................................................................................................................................................................2490.1110010
...................................................................TCACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2490.1110010
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACGA................................................................................................................................................................2890.1111000
..............................................................................TTCGTCGTTGCGAACGTCCAATC.............................................................................................................................................................................................2390.1110010
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACG.................................................................................................................................................................2790.1111000
.....................................................................ACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................18100.1011000
................................................................ACTTCACCTGGTCGTTCGTCGT............................................................................................................................................................................................................22100.1011000
.................................................................................................................................CACCACGGCCTCATCCTCGACCTCA........................................................................................................................................25110.0911000
.........................................................................................................................TCCTCACGCACCACGGCCTCATCCTC...............................................................................................................................................26110.0911000
...............................................................................................................................CGCACCACGGCCTCATCCTCGACCTCA........................................................................................................................................27110.0911000
..............................................................................................................................ACGCACCACGGCCTCATCCTCGACA...........................................................................................................................................25110.0911000
................................................................................................................................GCACCACGGCCTCATCCTCGACCTCA........................................................................................................................................26110.0911000
...................................................................................................................................CCACGGCCTCATCCTCGACCTCAAGGG....................................................................................................................................27110.0911000
.........................................................................................................................TCCTCACGCACCACGGCCTCATCCTCGAC............................................................................................................................................29110.0911000
.................................................................................................................................CACCACGGCCTCATCCTCGACCTCAAG......................................................................................................................................27110.0911000
droSim2
AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTCAACCTACGGCGTAACTTTACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCATTACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAAAAG-----------CTGTTTCGACCAAAGGGGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................GCAATCATCGGAGCAGATTTC.......................................................................................................................................................................213106.0031800000000000082236000
......................A-----ATCTAACT------TTTGGTCTCAACCTA.........................................................................................................................................................................................................................................24465.002600007003412619731000000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................24357.3317200000001345330000000
......................................................................................................GCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................24343.671310000000000009635000
........................................................................................CGAACGTCCAATCAGCAATCATCGGA................................................................................................................................................................................26343.671310000001253300000000
........................................................................................CGAACGTCCAATCAGCAATCATCGG.................................................................................................................................................................................25340.6712200000010401800000000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACGTT................................................25339.6711900040012538356001000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGA............................................................................23233.50670000001491115000000
.....................AA-----ATCTAACT------TTTGGTCTCAACCTAC........................................................................................................................................................................................................................................26429.001160000000000002888000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGAA...........................................................................24228.00560001000211429000000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTG....................................................................................................................................................................25324.3373000000064090000000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGGA..............................................................................22216.0032000000203900000000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................25314.6744000000134080010000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGA..............................................................................21214.0028000100024300000000
.....................AA-----ATCTAACT------TTTGGTCTCAACCTA.........................................................................................................................................................................................................................................25412.50500000001100001830000
......................................................................................................GCAATCATCGGAGCAGATTTCCT.....................................................................................................................................................................23312.33370000000000001918000
..........................................................GGCGTAACTTTACCTGGTCGTTCGT...............................................................................................................................................................................................................25111.0011000000010000100000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................25311.00330000000000001914000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAACGT.................................................24310.0030000608021112000000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAG................................................................................1929.0018000016000002000000
..............................................................TAACTTTACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................2519.00900000003000060000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................2639.0027000000024001020000
......................................................................................................GCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2237.3322000000000000715000
..............................................................TAACTTTACCTGGTCGTTCGTCGTTG..........................................................................................................................................................................................................2617.00700000001000060000
................................................................ACTTTACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2717.00700000006000010000
..............................................................TAACTTTACCTGGTCGTTCGTCGT............................................................................................................................................................................................................2417.00700000000000061000
.....................AA-----ATCTAACT------TTTGGTCTCAACCT..........................................................................................................................................................................................................................................2447.00280000000000001711000
......................A-----ATCTAACT------TTTGGTCTCAACCTAC........................................................................................................................................................................................................................................2547.0028000412631002000000
.........................................................CGGCGTAACTTTACCTGGTCGTTCGT...............................................................................................................................................................................................................2617.00700000000000061000
................................................................................................CAATCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2546.5026000000223110611000
.....................................................................................................AGCAATCATCGGAGCAGATTTC.......................................................................................................................................................................2236.001800000007030062000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGGGGA............................................................................2426.001200000092100000000
......................A-----ATCTAACT------TTTGGTCTCAACCT..........................................................................................................................................................................................................................................2345.7523001400013041000000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCAC..................................................................................................................................................................2635.6717000000000000134000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGAAG..........................................................................2525.501100000001118000000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGG.............................................................................2225.501100000006005000000
......................................................................................................................................................................TTATGGATCCCTCAAAAG-----------CTG............................................................................................2135.3316000000000000610000
.....................................................................................................AGCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2335.001500000007170000000
......................................................................................................GCAATCATCGGAGCAGATTT........................................................................................................................................................................2044.7519000000000000316000
......................................................................................................................................CGGCCTCATCCTCGACCTCAAGGGTAAA................................................................................................................................2834.671400000001010093000
......................................................................................TGCGAACGTCCAATCAGCAATCATCGG.................................................................................................................................................................................2734.671400000024012032000
..................................................................TTTACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2514.00400000004000000000
....................................................................TACCTGGTCGTTCGTCGTTGCGAACG....................................................................................................................................................................................................2614.00400010000003000000
......TACCTACGGCACGCTAA-----ATCTAACT------T.......................................................................................................................................................................................................................................................2634.001200010001000046000
......TACCTACGGCACGCTAA-----ATCTAACT------TT......................................................................................................................................................................................................................................................2734.001200000000000057000
.......................................................................................................................................................TCAAGGGTAAACGCCTTATGGATCCC.................................................................................................................2634.0012000012000000000000
........................................................................................CGAACGTCCAATCAGCAATCATCGGAG...............................................................................................................................................................................2734.0012000000120000000000
.....................AA-----ATCTAACT------TTTGGTCTCAACCTACG.......................................................................................................................................................................................................................................2733.671100000000000029000
........................................................................................................AATCATCGGAGCAGATTTCCTCACGC................................................................................................................................................................2633.671100130000007000000
......................................................................................................GCAATCATCGGAGCAGATTTCA......................................................................................................................................................................2233.671100000000000065000
.......................................................................................................................................................................................G-----------CTGTTTCGACCAAAGGA..............................................................................1823.50700007000000000000
........................................................................................................................................................................ATGGATCCCTCAAAAG-----------CTGTTTCG.......................................................................................2423.50700007000000000000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGG...............................................................................2123.50700000032200000000
........................................................................................................AATCATCGGAGCAGATTTCCTCAC..................................................................................................................................................................2433.331000045000001000000
.....................................................................................................................................ACGGCCTCATCCTCGACCTCAAGGGTAAA................................................................................................................................2933.331000000003000052000
.......ACCTACGGCACGCTAA-----ATCTAACT------TT......................................................................................................................................................................................................................................................2633.00900000000000054000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGG...............................................................................2023.00600010003101000000
.............................................................................................GTCCAATCAGCAATCATCGGAGCAGA...........................................................................................................................................................................2633.00900000043101000000
....................................................................TACCTGGTCGTTCGTCGTTGCGAAAA....................................................................................................................................................................................................2613.00300000000000030000
..................................................................................................................................................................................................................................................T------CTACAATCA---------------------ACGTGC-AAA.1933.00900008000001000000
........................................................................................CGAACGTCCAATCAGCAATCATCGGAGC..............................................................................................................................................................................2833.00900000090000000000
......................................................................................................................................................................................................TTTCGACCAAAGGGGAAGTTGCA.....................................................................2323.00600000000000051000
..................................................................TTTACCTGGTCGTTCGTCGTTGCGAAC.....................................................................................................................................................................................................2713.00300000010200000000
........................................................................................................AATCATCGGAGCAGATTTCCTC....................................................................................................................................................................2233.00900200000007000000
.........................................................CGGCGTAACTTTACCTGGTCGTTCG................................................................................................................................................................................................................2513.00300000001001010000
...TGATACCTACGGCACGCTAA-----A.....................................................................................................................................................................................................................................................................2123.00600000600000000000
......................................................................................TGCGAACGTCCAATCAGCAATCATCGGA................................................................................................................................................................................2832.67800000002000033000
...........................................................................................ACGTCCAATCAGCAATCATCGGAGCAGA...........................................................................................................................................................................2832.67800000015010010000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACGC................................................................................................................................................................2832.67800000000000062000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACTCTACAAC...................................................2232.67800008000000000000
..............................................................................................................................................................................................................................................CGTTT------CTACAATCA---------------------ACGTGC-AAAG2432.67800000800000000000
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAA.................................................................................................................................2232.67800000800000000000
..........................................................................................................................................................................................................................GCAGAAGCAAAACTCTACAAC...................................................2132.67800008000000000000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACG.................................................................................................................................................................2732.67800000000000053000
........................................................................................................AATCATCGGAGCAGATTTCCTCACG.................................................................................................................................................................2532.67800020000006000000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGG..............................................................................2122.50500000000113000000
.........................................................................................................................................................................TGGATCCCTCAAAAG-----------CTGTTTCGACCAA..................................................................................2822.50500000011110010000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCAT..................................................................................................................................................................2632.33700000000000043000
.................................................................................................................................................TCGACCTCAAGGGTAAACGCCTTATGGA.....................................................................................................................2832.33700000031120000000
..........................................................................................................................................CTCATCCTCGACCTCAAGGGTAAAC...............................................................................................................................2532.33700007000000000000
.....................................................................................................................................................................CTTATGGATCCCTCAAAA...........................................................................................................1832.33700007000000000000
......................A-----ATCTAACT------TTTGGTCTCAACCTACG.......................................................................................................................................................................................................................................2632.00600006000000000000
..........................................................GGCGTAACTTTACCTGGTCGTTCG................................................................................................................................................................................................................2412.00200000000000020000
...................................................................................................TCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2242.00800006000100001000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAA.................................................................................1822.00400000000004000000
................................................................................CGTCGTTGCGAACGTCCAATC.............................................................................................................................................................................................2132.00600006000000000000
......................................................................................TGCGAACGTCCAATCAGCAATCATCGGAG...............................................................................................................................................................................2932.00600000002000013000
.........................................................................................................................................................AAGGGTAAACGCCTTATGGA.....................................................................................................................2032.00600006000000000000
...............................................................AACTTTACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2912.00200000002000000000
....................................................................................................................................TACGGCCTCATCCTCGACCTCAAGGGTAAA................................................................................................................................3012.00200000000000020000
.......ACCTACGGCACGCTAA-----ATCTAACT------T.......................................................................................................................................................................................................................................................2532.00600000000000024000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGAAT..........................................................................2522.00400000000013000000
................................................................ACTTTACCTGGTCGTTCGTCGTTGCGAAC.....................................................................................................................................................................................................2912.00200000011000000000
....................................................................................................................................TACGGCCTCATCCTCGACCTCAAGGG....................................................................................................................................2612.00200000001000010000
....................................................................TACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2412.00200000001000010000
...............................................................AACTTTACCTGGTCGTTCGTCGT............................................................................................................................................................................................................2312.00200000000000020000
..........TACGGCACGCTAA-----ATCTAACT------T.......................................................................................................................................................................................................................................................2242.00800000000000017000
..........................................................................................................................................CTCATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2832.00600006000000000000
..............................................................TAACTTTACCTGGTCGTTCGTCGTAA..........................................................................................................................................................................................................2612.00200000000000020000
.............................................................................GTTCGTCGTTGCGAACGTCCA................................................................................................................................................................................................2132.00600006000000000000
.............................................................................................................................................................................................................................GAAGCAAAACTCTACAACGTT................................................2132.00600000013002000000
...............................................................AACTTTACCTGGTCGTTCGTCGTTGC.........................................................................................................................................................................................................2612.00200000000000020000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGAAGT.........................................................................2622.00400000000112000000
.............................................................GTAACTTTACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................2612.00200000000000020000
..............................................................................................................................................TCCTCGACCTCAAGGGTAAACGC.............................................................................................................................2332.00600006000000000000
...............................................................AACTTTACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2812.00200000002000000000
........................................................................................................AATCATCGGAGCAGA...........................................................................................................................................................................1541.75700000000007000000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCCTC....................................................................................................................................................................2731.67500000010110011000
...................................................................................................TCAGCAATCATCGGAGCAGATTTCC......................................................................................................................................................................2531.67500000500000000000
.....................................................................................................................................ACGGCCTCATCCTCGACCTCAAGGGTAA.................................................................................................................................2831.67500000000000041000
........................................................................................................AATCATCGGAGCAGATTTCCTCA...................................................................................................................................................................2331.67500030000002000000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCAT..................................................................................................................................................................2731.67500000005000000000
..................................................................................................................................................................................................................................................T------CTACAATCA---------------------ACGTGC-AAAG2031.67500000020003000000
.......................................................................................................................................................................TATGGATCCCTCAAAAG-----------CTG............................................................................................2031.67500000000000041000
................................................................................................CAATCAGCAATCATCGGAGCA.............................................................................................................................................................................2141.50600000600000000000
.......................................................................................................................................................................TATGGATCCCTCAAAAG-----------CTGTTTCGA......................................................................................2621.50300000001110000000
..........TACGGCACGCTAA-----ATCTAACT------TT......................................................................................................................................................................................................................................................2341.50600000000000033000
......................................................................................................................................................................TTATGGATCCCTCAAAAG-----------CTGT...........................................................................................2221.50300000000000003000
..........TACGGCACGCTAA-----ATCTAACT------TTTGGTC.................................................................................................................................................................................................................................................2841.50600000022110000000
......................A-----ATCTAACT------TTTGGTCTCAA.............................................................................................................................................................................................................................................2041.50600006000000000000
.............................................................................................................................................................................TCCCTCAAAAG-----------CTGTTTCGACCAAAGG...............................................................................2721.50300000011010000000
......................................................................................................................................................................................................TTTCGACCAAAGGGGAAGTTG.......................................................................2121.50300000000000030000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGAAA..........................................................................2521.50300000000003000000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACGCAC..............................................................................................................................................................3021.50300000000000003000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGGG..............................................................................2221.50300000021000000000
................................................................................................CAATCAGCAATCATCGGAGCAGAT..........................................................................................................................................................................2441.50600200000000031000
..............................CTAACT------TTTGGTCTCAACCTAC........................................................................................................................................................................................................................................2241.50600006000000000000
.....................AA-----ATCTAACT------TTTGGTCTCAAC............................................................................................................................................................................................................................................2241.50600000000000024000
......................................................................................................GCAATCATCGGAGCAGATTTA.......................................................................................................................................................................2141.50600000000000033000
......................A-----ATCTAACT------TTTGGTCTCA..............................................................................................................................................................................................................................................1941.50600006000000000000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGGGG.............................................................................2321.50300000020100000000
......................................................................................................................................................................TTATGGATCCCTCAAAAG-----------CTGAA..........................................................................................2321.50300000000000012000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCAA..................................................................................................................................................................2631.33400000000000031000
..............................................................................................TCCAATCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2731.33400000010030000000
............................................................................................CGTCCAATCAGCAATCATCGGAGCAG............................................................................................................................................................................2631.33400000021000001000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTGT...................................................................................................................................................................2631.33400000004000000000
..........................................................................................................................................................................................................................GCAGAAGCAAAACTCTACAACGTT................................................2431.33400000002020000000
.........................................................................................................................................................................................................................TGCAGAAGCAAAACT..........................................................1531.33400000000004000000
.....ATACCTACGGCACGCTA............................................................................................................................................................................................................................................................................1731.33400000000004000000
.....................................................................................................AGCAATCATCGGAGCAGATTTCCTCACGC................................................................................................................................................................2931.33400000004000000000
.......................................................................................GCGAACGTCCAATCAGCAATCATCGGA................................................................................................................................................................................2731.33400000022000000000
..................................................................................................ATCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2341.25500000000001040000
.....................AA-----ATCTAACT------TTTGGTCTCAACCTAT........................................................................................................................................................................................................................................2641.25500000000000005000
....................................................................TACCTGGTCGTTCGTCGTTGCGAAA.....................................................................................................................................................................................................2511.00100000000000010000
..............................................................TAACTTTACCTGGTCGTTCGTCG.............................................................................................................................................................................................................2311.00100000000000010000
..............................................................................................TCCAATCAGCAATCATCGGAGCAGAT..........................................................................................................................................................................2631.00300000000000021000
............................................................CGTAACTTTACCTGGTCGTTCGTCGT............................................................................................................................................................................................................2611.00100000000000010000
...............................................................................................................................CGCATTACGGCCTCATCCTCGACCT..........................................................................................................................................2511.00100000000000001000
...................................................................................................TCAGCAATCATCGGAGCAGATTTC.......................................................................................................................................................................2431.00300000000001011000
......................................................................................................GCAATCATCGGAGCAGATT.........................................................................................................................................................................1941.00400000000002002000
......................................................................................................GCAATCATCGGAGCAGATTTCCTT....................................................................................................................................................................2431.00300000000000030000
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCC............................................................................................................................2731.00300030000000000000
.....................................................................................................................................ACGGCCTCATCCTCGACCTCAAGGGTA..................................................................................................................................2731.00300000001000020000
......................................................................................................GCAATCATCGGAGCAGATTTCCTCACGCA...............................................................................................................................................................2911.00100000000000010000
...................................................................................................................................................................................AAAAG-----------CTGTTTCGACCAAAGGAT.............................................................................2321.00200000010100000000
...................................................................TTACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2411.00100000000000010000
............................................................................................CGTCCAATCAGCAATCATCGGAGCAGATT.........................................................................................................................................................................2931.00300000011010000000
......................................................................................................................................................................TTATGGATCCCTCAAAAG-----------CTGA...........................................................................................2221.00200000000000020000
................................................................ACTTTACCTGGTCGTTCGTCGTTGCG........................................................................................................................................................................................................2611.00100000000000010000
..............................................................TAACTTTACCTGGTCGTTCGTCGTTGCGA.......................................................................................................................................................................................................2911.00100000001000000000
..........................................................GGCGTAACTTTACCTGGTCGTTCGTC..............................................................................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................TTCGACCAAAGGGGAAGTTGCAGA...................................................................2421.00200000001100000000
......................................................................................................................................................................................................TTTCGACCAAAGGGGAAGTTGCAGC...................................................................2521.00200000000000002000
......................................................................................................................................................................................................TTTCGACCAAAGGGGAAGTTGCAGA...................................................................2521.00200000000000020000
....................................................................TACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................1911.00100000001000000000
.........................................................................................GAACGTCCAATCAGCAATCATCGGA................................................................................................................................................................................2531.00300000003000000000
........................................................................................................AATCATCGGAGCAGATTTCCTCACT.................................................................................................................................................................2531.00300000000003000000
...........................................................................................ACGTCCAATCAGCAATCATCGGAGCAG............................................................................................................................................................................2731.00300000001110000000
................................................................................................................................GCATTACGGCCTCATCCTCGACCT..........................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGGGATT..........................................................................2521.00200000000002000000
.............................................................................................................................................................................TCCCTCAAAAG-----------CTGTTTCGACCAAAGGA..............................................................................2821.00200000010001000000
....................................................................................................................................................................................AAAG-----------CTGTTTCGACCAAAGGAA.............................................................................2231.00300000003000000000
...................................................................................................TCAGCAATCATCGGAGCAGATTT........................................................................................................................................................................2341.00400000001101001000
............................................................................................................ATCGGAGCAGATTTCCTCACGCATT.............................................................................................................................................................2511.00100000000100000000
........................................................................................................................................................................................................TCGACCAAAGGGGAA...........................................................................1521.00200000001001000000
..........................................................GGCGTAACTTTACCTGGTCGTTCGTCGT............................................................................................................................................................................................................2811.00100000000000010000
.......................................................................................................................................................................TATGGATCCCTCAAAAG-----------CTGTTTCGACCA...................................................................................2921.00200000000200000000
.............................................................................................................................................ATCCTCGACCTCAAGGGTAAACGCCT...........................................................................................................................2631.00300000000003000000
...........................................................................TCGTTCGTCGTTGCGAACGTC..................................................................................................................................................................................................2131.00300000000003000000
...........................................TTGGTCTCAACCTACGGCGTA..................................................................................................................................................................................................................................2131.00300000000001002000
........................................................................................................AATCATCGGAGCAGATT.........................................................................................................................................................................1741.00400000000004000000
...............................................................AACTTTACCTGGTCGTTCGTCGTTG..........................................................................................................................................................................................................2511.00100000000000010000
..............................................................TAACTTTACCTGGTCGTTCGTCGTTGC.........................................................................................................................................................................................................2711.00100000001000000000
..........................................................................................................TCATCGGAGCAGATTTCCTCACGCA...............................................................................................................................................................2511.00100000000000001000
...........................................................................................................................................TCATCCTCGACCTCAAGGGTAAACGCCT...........................................................................................................................2831.00300010000000020000
.................................................................................................................AGCAGATTTCCTCACGCA...............................................................................................................................................................1811.00100000000001000000
................................................................ACTTTACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................2311.00100000001000000000
........................................................................................................AATCATCGGAGCAGATTTCCTCACGCA...............................................................................................................................................................2711.00100010000000000000
...TGATACCTACGGCACGCTAA-----ATCTA.................................................................................................................................................................................................................................................................2521.00200000000000011000
................................................................ACTTTACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2811.00100000001000000000
...................................................................................................................................TTACGGCCTCATCCTCGACCTCAAGG.....................................................................................................................................2611.00100000000000010000
..........................................................GGCGTAACTTTACCTGGTCGTTCGTA..............................................................................................................................................................................................................2611.00100000000000010000
..........................................................GGCGTAACTTTACCTGGTCGTTCGTG..............................................................................................................................................................................................................2611.00100000000000010000
..................................................................TTTACCTGGTCGTTCGTCGTTGCGAA......................................................................................................................................................................................................2611.00100000000000010000
...............................................................AACTTTACCTGGTCGTTCGTCGTT...........................................................................................................................................................................................................2411.00100000000000010000
......TACCTACGGCACGCTAA-----ATCTAACT------........................................................................................................................................................................................................................................................2531.00300000012000000000
dm3
AATTGATACCTACGGCACGCTAA-----ATCTAACT------TTTGGTCTTAACTTACGGCGTAACTTCACCTGGTCGTTCGTCGTTGCGAACGTCCAATCAGCAATCATCGGAGCAGATTTCCTCACGCACCACGGCCTCATCCTCGACCTCAAGGGTAAACGCCTTATGGATCCCTCAATCC--CTCG-----CCGTTTCGACCAAAGGAGAAGTTGCAGAAGCAAAACTCTACAACGTTT------CTACAATCA---------------------ACGTGC-AAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..................................................................................................ATCAGCAATCATCGGAGCAG............................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000001000000000000000000000000000000000000
...........................................................................................ACGTCCAATCAGCAATCATCGGAGCAGA...........................................................................................................................................................................28200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CGTCCAATCAGCAATCATCGGAGCA.............................................................................................................................................................................25200.3060000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000101000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................TTTCGACCAAAGGAGAAGTTGCAG....................................................................24200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
...............................................................................................................................................................................................................AAGGAGAAGTTGCAGAAGCAA..............................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000020000000000010000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CAAGGGTAAACGCCTTATGGATCCCT................................................................................................................26200.3060000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTTCACCTGGTCGTTCGTC..............................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000400000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droBia1
CATTCACACCTACGGCAGCGTGG-----TGGTTGACCTGAACCTTGACCTGAACCTGAACCGTTCCTTCATGTGACCTTTTATCGCAGCTGACACCGAGTTAGCTATCATAGGCGCCGATTTCTTGTCCCATTTTAACTTGCTTGTCGACATCAAGGGCAAAAAACTGATTGATGCAAACACCA-----------ATTTGTCGAACCCGGTTTTGATTTCGGACGCGAAACATAACTCTGTGT------CTACCATTA---------------------TTAC-T-AAATSizeHit CountTotal NormTotal
No Reads
droTak1
AATTGATACCTACGAGACTTTAA-----ATCTGACG------TTTGGTCTTAACCTACAACGCAAATTTAGCTTGCAATTCGTCGTCGCTAACGTCCAATCAGCAATCATTGGTGCGGATTTTCTTACCTATCATGGTCTGATCATTGACCTCAAGGGTAAACGCCTCATTGATTCTTTAACGT-----------CCACATCAACAAAAGGAGAGCTAACGGAAACAAAAGTCTATAACATTT------CTACAATCA---------------------ACTCC-----ASizeHit CountTotal NormTotal
No Reads
droEle1
CATCCACACCTACGGAAGCATGC-----CAGTTGAC------ATGAACATTGGGCTACGGCGTAACCTTATCTGGCCTTTTATCGTTGCTGACACCGAAGTAGCTATAATTGGTGCAGACTTTCTGTCCCACTTTCATCTCCTCGTCGACGTAAAGGGCCAAAAACTCATCGATGCGAACACCA-----------ATCTATCGACACCAGCTTGTCTTTCCAACGCTGTACATCACTCTGTGT------CTAC---------------------------CATTC-AAGGSizeHit CountTotal NormTotal
No Reads
droRho1
CATCCACACCTACGGCAGCGTAC-----TGGTTGAC------CTCAACTTTGGACTTCGCCGTTCTTTCATGTGGCCTTTCATCGTAGCTGACACCGAGTTAGCTATCATAGGCGCCGATTTCTTATCCCATTTCA-ACTGCTCGTGGACGTTAAAGGCAAAAAACTAATTGATGCAAACACCA-----------ACTTGTCGAGCCCGGCTTTGCTTTCGAACGCGAAACATTACTCTGTGT------CGACCATTA---------------------ATGG------TSizeHit CountTotal NormTotal
No Reads
droFic1
CATTCATACTTATGGAAAGTACG-----TAACTCAG------CTGAACTTGGGTCTCCGCCGAAACTACACCTGGCCATTCATTATCGCTGATGTGCACACAGCTATTATTGGGGCAGACTTCTTGAGCAACTTTCAATTGCTCATCGATCTTAAAAATCAAAGATTAATTGACTCGCTTACTG-----------GTCTTTCAACGCCCGCATGTCTAGCACAAGCGAAACACATATCAGTTT------CCACAGTGC-----------------AGCGTGTTTC-GAATSizeHit CountTotal NormTotal
No Reads
droKik1
AATTCAAACTTATGGAACCACTC-----GCCTTACG------CTGGATCTCGGTCTACGTCGCCCTTTCACATGGATTTTTACCATAGCCGACACAAAAT-CCCAATCATTGGTTCAGACTTCTTGCAGCACTTTAATCTACTGGTCGACCTTAAAAACTCAAGATTAGTCGACGTCGAAACAC-----------GCCTATCATG-CTGTGGAA-------------------TG--TTTAGC------CAACAATCA---------------------ACCT-C-GGAGSizeHit CountTotal NormTotal
No Reads
droAna3
AATAAAAACATACGGCACCATCC-----GCCTGACA------CTGGACCTAGGACTACGTCGTCCTTACACTTGGAACTTTGTTATTGCTGATACCAATACTCCAATCATTGGATCCGATTTTCTACACCACTACAACCTCCTTTTCAACATCAAGGAGGCTAAGTTAGTTGATGCCAAAACAC-----------GCTTGAC-----------ATGTTGTGGTATCCACACACATCAAAATTC------ATCAA-------------------------TTATTA-AAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................TACACCACTACAACCTCCTTTTCAACA...........................................................................................................................................2720.501100000
......................C-----GCCTGACA------CTGGACCTAGGACTACG.......................................................................................................................................................................................................................................2620.501100000
...............................TGACA------CTGGACCTAGGACTACGTCGTC..................................................................................................................................................................................................................................27180.224310000
...............................TGACA------CTGGACCTAGGACTACGTCGTCC.................................................................................................................................................................................................................................28180.224040000
...............................TGACA------CTGGACCTAGGACTACGT......................................................................................................................................................................................................................................23200.153102000
...............................TGACA------CTGGACCTAGGACTACGTC.....................................................................................................................................................................................................................................24200.153210000
................................GACA------CTGGACCTAGGACTACGTCGTCC.................................................................................................................................................................................................................................27180.112020000
....................................................................CACTTGGAACTTTGTTATTGCTGAT.....................................................................................................................................................................................................2590.111100000
...................................................................................................................................................................AGTTAGTTGATGCCAAAACAC-----------GC.............................................................................................23200.102200000
.................................................................................................................................................................TAAGTTAGTTGATGCCAAAACAC-----------GCT............................................................................................26200.102020000
....................................................................................ATTGCTGATACCAATACTCCAATCATTG..................................................................................................................................................................................28200.102020000
....................................................................................ATTGCTGATACCAATACTCCAATC......................................................................................................................................................................................24200.102110000
...................................A------CTGGACCTAGGACTACGTCGTC..................................................................................................................................................................................................................................23200.102101000
........................................................................................................................................................CAAGGAGGCTAAGTTAGTTGATGCCT................................................................................................................26200.051010000
......................................................................................................................................................ATCAAGGAGGCTAAGTTAGTTGATGC..................................................................................................................26200.051100000
.....................................................................................TTGCTGATACCAATACTCCAATCAT....................................................................................................................................................................................25200.051100000
.................................................TAGGACTACGTCGTCCTTACACTTGGAAC....................................................................................................................................................................................................................29200.051010000
.......................................................................................................................................................TCAAGGAGGCTAAGTTAGTTGATGC..................................................................................................................25200.051000010
...................................................................................................................................................................AGTTAGTTGATGCCAAAACAC-----------GCTTGA.........................................................................................27200.051100000
......................................................CTACGTCGTCCTTACACTTGGAAC....................................................................................................................................................................................................................24200.051010000
....................................................................................................................CGATTTTCTACACCACTACAACC.......................................................................................................................................................23200.051010000
........................................................................................................AATCATTGGATCCGATTTTCTACACCAC..............................................................................................................................................................28200.051010000
................................................................................................................GATCCGATTTTCTACACCACTACAACC.......................................................................................................................................................27200.051100000
..................................................................................TTATTGCTGATACCAATACTCC..........................................................................................................................................................................................22200.051010000
..................................CA------CTGGACCTAGGACTACGTCGTCC.................................................................................................................................................................................................................................25200.051010000
....................................................................................................................................................................GTTAGTTGATGCCAAAACAC-----------GCTTG..........................................................................................25200.051100000
.........................................................................................................................................................................TTGATGCCAAAACAC-----------GCTTGAC-----------A............................................................................23200.051100000
....................................................................................................................................................................GTTAGTTGATGCCAAAACAC-----------GCT............................................................................................23200.051100000
....................................................................................ATTGCTGATACCAATACTCCAATCATT...................................................................................................................................................................................27200.051010000
...............................TGACA------CTGGACCTAGGACTACG.......................................................................................................................................................................................................................................22200.051100000
.................................................................................................................................................TCAACATCAAGGAGGCTAAGTTAGT........................................................................................................................25200.051000010
...AAAAACATACGGCACCAT.............................................................................................................................................................................................................................................................................18200.051010000
..................................................................................................TACTCCAATCATTGGATCCGATTTC.......................................................................................................................................................................25200.051010000
...............................TGACA------CTGGACCTAGGACTACGTCG....................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................................................................TTAGTTGATGCCAAAACAC-----------GCTTGA.........................................................................................25200.051010000
....................................................................................ATTGCTGATACCAATACTCCAATCAT....................................................................................................................................................................................26200.051100000
droBip1
AATACAAACCTATGGAGAAAAAC-----GCATAGCA------TTGTCACTGGGATTGCGACGAAACTTCGTGTGGACTTTCGTGATAGCTGACGTCAACTGCGCTATCATCGGATCCGACTTTCTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CATTCGAACCTTCGGAAATCAGG-----ACCTCGAA------CTCGACCTGGACCTGGATCGTTCGTTTAAATGGTCATTTGTCATCGCTGATGTACAAACCGCAATTATTGGCGCTGACTTCCTATCACAGTTCCATTTGCTTATTGACATCAAGAAACAACGTCTCACCAACGGCACAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------TTGTTTCTCCAA------ATATAAACAAAACGCATCAAGGCAAGGACC-GACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................TCAGG-----ACCTCGAA------CTCGACCTGGACC...........................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................AAGCA-----------TATCTCTAATCTCGC................................................................................2011.0010100000000
....................................................................TAAATGGTCATTTGTCATCGCTGATG....................................................................................................................................................................................................2630.3310100000000
.......................................................................................................................................................TCAAGAAACAACGTCTCACCAACGG..................................................................................................................2540.2510100000000
droPer2
CATTCGAACCTTCGGAAATCAGG-----ACCTCGAA------CTCGACCTGGACCTGGATCGTTCGTTTAAATGGTCATTTGTCATCGCTGATGTACAAACCGCAATTATTGGCGCTGACTTCCTATCACAGTTCCATTTGCTTATTGACATCAAGAAACAACGTCTCACCAACGGCACAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------TTGTTTCTCCAA------ATATAAACAAAACGCATCAAGGCAAGGACC-GACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCAGGA............................................................................2625.50110110000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCAGG.............................................................................2525.00100100000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCA...............................................................................2323.006060000
..............................................................................................TACAAACCGCAATTATTGGCGCTGACT.........................................................................................................................................................................2752.20110110000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCAG..............................................................................2421.503030000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGC................................................................................2221.503030000
....................................................................TAAATGGTCATTTGTCATCGCTGATG....................................................................................................................................................................................................26121.25150150000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCAGGAT...........................................................................2721.002020000
..................TCAGG-----ACCTCGAA------CTCGACCTGGACC...........................................................................................................................................................................................................................................2611.001010000
....................................................................TAAATGGTCATTTGTCATCGCTGA......................................................................................................................................................................................................24120.587070000
...................................................................................................................................................................................AAGCA-----------TATCTCTAATCTCGCAGGAT...........................................................................2520.501010000
......................................................................................................................................................................TCACCAACGGCACAAGCA-----------TATCTC.........................................................................................2420.501010000
..................................................................................................................................................................................CAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------.....................................................2720.501010000
..................................................................................................................................................................................CAAGCA-----------TATCTCTAATCTCGC................................................................................2120.501010000
.................................................................................................................................................................................ACAAGCA-----------TATCTCTAATCTCGCAGGATT---------------------.....................................................2820.501010000
..................................................................................................................................................................................CAAGCA-----------TATCTCTAATCTCGCAG..............................................................................2320.501010000
....................................................................................................................................................................TCTCACCAACGGCACAAGCA-----------TATCTC.........................................................................................2620.501010000
................................................................................................................................ACAGTTCCATTTGCTTATTGACATC.........................................................................................................................................2550.402020000
................................................................................................................................ACAGTTCCATTTGCTTATTGACAT..........................................................................................................................................2450.402020000
.......................................................................................................................................................TCAAGAAACAACGTCTCACCAACGG..................................................................................................................2570.292020000
....................................................................TAAATGGTCATTTGTCATCGCTGAT.....................................................................................................................................................................................................25120.253030000
...........................................................TCGTTCGTTTAAATGGTCATTTGTCA.............................................................................................................................................................................................................2690.222020000
.................................................................................................................................CAGTTCCATTTGCTTATTGACATCAA.......................................................................................................................................2650.201010000
..............................................................................................TACAAACCGCAATTATTGGCGCTGACTTC.......................................................................................................................................................................2950.201010000
..............................................................................................TACAAACCGCAATTATTGGCGCTGACTT........................................................................................................................................................................2850.201010000
............................................................................................TGTACAAACCGCAATTATTGGCGCTGAC..........................................................................................................................................................................2850.201010000
................................................................................................................................ACAGTTCCATTTGCTTATTGACA...........................................................................................................................................2350.201010000
................................................................................................................................ACAGTTCCATTTGCTTATTGACATCA........................................................................................................................................2650.201010000
.....................................................................AAATGGTCATTTGTCATCGCTGAT.....................................................................................................................................................................................................24120.172020000
....................................................................TAAATGGTCATTTGTCATCGCTG.......................................................................................................................................................................................................23120.172020000
..........................................................................................................................................TTGCTTATTGACATCAAGAAACA.................................................................................................................................2360.171010000
..............................................................................................TACAAACCGCAATTATTGGCGCT.............................................................................................................................................................................2360.171010000
....................................................................TAAATGGTCATTTGTCATCGC.........................................................................................................................................................................................................21120.172110000
.......................................................................................................................................................TCAAGAAACAACGTCTCACCAACGGCA................................................................................................................2770.141010000
........................................................................................................................................................CAAGAAACAACGTCTCACCAACGGCAC...............................................................................................................2770.141010000
.......................................................................................................................................................TCAAGAAACAACGTCTCACCAACGGCAC...............................................................................................................2870.141010000
.......................................................................................................................................................TCAAGAAACAACGTCTCACCA......................................................................................................................2170.141010000
.................................................................................GTCATCGCTGATGTACAAACCGCAA........................................................................................................................................................................................2570.141010000
.....................................................................AAATGGTCATTTGTCATCGCTGATG....................................................................................................................................................................................................25120.081010000
.....................................................................AAATGGTCATTTGTCATCGCTG.......................................................................................................................................................................................................22120.081010000
....................................................................TAAATGGTCATTTGTCATCG..........................................................................................................................................................................................................20120.081010000
....................................................................TAAATGGTCATTTGTCATCGCTGATGTA..................................................................................................................................................................................................28120.081010000
....................................................................TAAATGGTCATTTGTCATCGCT........................................................................................................................................................................................................22120.081010000
.....................................................................AAATGGTCATTTGTCATCGCTGA......................................................................................................................................................................................................23120.081010000
droWil2
CATGAACACGTACGGCAAAGACGCAATAATGCAGAG------CTCAATCTTGGCCTACACCGCAGTTTCACCTGGCCCTTTATCAACGCAGATGTCCAAGTAGCCATCATTGGAGCTGACTTTCTAACCAAAAACGAACTAATTATTGATTTGGCAAATAAATTTCTCATTGATTCTATCACAG-----------GTCTATCAACGCCTGGATGCTTAGCTGGAACGTGACAACATTCCATAT-------------CA---------------------ACAGTA-GAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................CAGATGTCCAAGTAGCCATCATTGGAGC..............................................................................................................................................................................28110.09100010
............................................................................................TGTCCAAGTAGCCATCATTGGA................................................................................................................................................................................22110.09101000
................................................................................................CAAGTAGCCATCATTGGAGCT.............................................................................................................................................................................21140.07100100
........................................................................................................CATCATTGGAGCTGACTTTCTAACCAAA..............................................................................................................................................................28160.06101000
...................................................................................................................CTGACTTTCTAACCAAAAACGAA........................................................................................................................................................23170.06101000
droVir3
CATTAAAACATATGGTTTAATTT-----GCCTCACT------CTCGACCTTGGGTTACGTCGTCCATTCACATGGAATTTTATCATTACTGACACAAAATTTCCAATCATTGGATTAGACTTTCTACAAAACTATAATCTTATTGTCAATATCAAAGATGGTAAATTAATCAACGCTCAAACTT-----------TGATAAC--------------------ACGTCAAGGTCTGCAGCCTTC----GATTATCATCA---------------------ACATTA-AAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AATAACTACGTACGGCACGACTC-----GCCTTACA------CTCGACCTTGGCTTGCGTCGTCCCTTCACGTGGAACTTCACCATAGCAGACACTACAATATCAATCCTATGATCAGACTTCATACAGCACTTCAACTTGCTCGTCGACATTAAGCGAGGAAAATTAATCGACGCGCAAACAC-----------TACTTGC-ACGTA-GTGGCATC--------------------TGCAGTCTACAA------TCGCTAACCA--------------CCGTCAAAACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................TTACA------CTCGACCTTGGCTTGCG.......................................................................................................................................................................................................................................2212.002200000
...............................TTACA------CTCGACCTTGGCTTGCGTCGTCC.................................................................................................................................................................................................................................2811.001100000
...............................TTACA------CTCGACCTTGGCTTGCGT......................................................................................................................................................................................................................................2311.001100000
........................................................................TGGAACTTCACCATAGCAGACACT..................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................................................CAGTCTACAA------TCGCTAACCA--------------CCGTCAACC..2911.001000001
...............................................................................................TACAATATCAATCCTATGATCAGACT.........................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................AGTCTACAA------TCGCTAACCA--------------CCGT.......2311.001100000
..................................................................................CCATAGCAGACACTACAATATCAATCCT....................................................................................................................................................................................2811.001100000
................................................................................CACCATAGCAGACACTACAATATCAATCC.....................................................................................................................................................................................2911.001100000
.................................................TTGGCTTGCGTCGTCCCTTCACGTGGA......................................................................................................................................................................................................................2711.001100000
...............................................................................................................................................................................................................................................CAGTCTACAA------TCGCTAACCA--------------CCGTCA.....2611.001100000
...............................TTACA------CTCGACCTTGGCTTGCGTC.....................................................................................................................................................................................................................................2411.001100000

Generated: 05/17/2015 at 10:30 PM