ID:

dya_42

 Coordinate:

3R:23018709-23018768 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.0 -40.0 -40.0

Flybase annnotation

intron [Dyak\GE10550-in]

No Repeatable elements found

Sense Strand Reads

CCAATATACCTATACGCAAGGTGTATAGATGATGTAAACTGGCCTGTCCCTGGGTAAACTCCCAATGATCCGGTGTACATTGAATTCGGATCCTTGGGTTTGAGCCCAAGGACAAGGACAGTAGTGCCCGCGAAGGGCCCAATGTTTGTTAACTCCTTTA

***********************************..((((.(((((((.(((((.....(((((.(((((((............))))))).))))).....))))).)))).))).))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 V058

head

 M026

head

 V052

head

 V120

male body		 M056

embryo

 V046

embryo
..................................................TGGGTAAACTCCCAATGATCCG........................................................................................ 22 0 1 888.00 888 334 190 193 90 67 9 5
...................................................GGGTAAACTCCCAATGATCCG........................................................................................ 21 0 1 44.00 44 44 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCCGT....................................................................................... 23 1 1 33.00 33 7 5 1 1 19 0 0
..................................................TGGGTAAACTCCCAATGATCC......................................................................................... 21 0 1 17.00 17 13 1 1 0 0 2 0
..................................................TGGGTAAAGTCCCAATGATCCG........................................................................................ 22 1 1 15.00 15 15 0 0 0 0 0 0
..................................................TGGGTAAACTCCCACTGATCCG........................................................................................ 22 1 1 9.00 9 0 6 0 3 0 0 0
..................................................TGGGAAAACTCCCAATGATCCG........................................................................................ 22 1 1 7.00 7 1 5 0 1 0 0 0
...................................................GGGTAAACTCCCAATGATCC......................................................................................... 20 0 1 5.00 5 5 0 0 0 0 0 0
........................................................................................GATCCTTGGGTTTGAGCCCAA................................................... 21 0 1 5.00 5 4 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCCGTT...................................................................................... 24 1 1 4.00 4 3 0 0 1 0 0 0
....................................................GGTAAACTCCCAATGATCCG........................................................................................ 20 0 1 4.00 4 4 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATC.......................................................................................... 20 0 1 4.00 4 0 0 0 0 0 4 0
..................................................TGGGTAAACTCCCAATGAGCCG........................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0 0
..................................................TTGGTAAACTCCCAATGATCCG........................................................................................ 22 1 1 3.00 3 0 1 0 0 0 2 0
..................................................TGGGGAAACTCCCAATGATCCG........................................................................................ 22 1 1 3.00 3 0 2 1 0 0 0 0
.................................................TTGGGTAAACTCCCAATGATCCG........................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TGGGTGAACTCCCAATGATCCG........................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TGGGTAAACTACCAATGATCCG........................................................................................ 22 1 1 2.00 2 0 1 1 0 0 0 0
..................................................TGGGTAGACTCCCAATGATCCG........................................................................................ 22 1 1 2.00 2 0 0 0 2 0 0 0
.....................................................GTAAACTCCCAATGATCCG........................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAGTGATCCG........................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0
..................................................TGGGTAAACTCACAATGATCCG........................................................................................ 22 1 1 2.00 2 0 0 1 1 0 0 0
...................................................GGGTAAACGCCCAATGATCCG........................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TGGGTAAACTCCCCATGAGCCG........................................................................................ 22 2 1 2.00 2 0 2 0 0 0 0 0
..................................................TGGGTAAAATCCCAATGATCCG........................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAAGGATC.......................................................................................... 20 1 1 2.00 2 0 0 2 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCCT........................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATAATCCG........................................................................................ 22 1 1 2.00 2 1 0 0 1 0 0 0
..................................................TTGGTAAAGTCCCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................AGGGTAAACTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTTCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
...................................................GGGTAAACGCCCAATGATCC......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TTGGTAAACTCCCAATGATCC......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
..................................................TAGGTAAACTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0
..................................................TGGGTAAAATCCCAATCATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCCATGCTCCG........................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGTAAATTCCCAATGATCAG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCGATGATCCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................GGTAAACTCCCAATGATC.......................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTAAACTCCTAATGATCCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CGGGCAAACTCCCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0 0
..................................................TGGGTTAACTCCCAATGCTCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCGGTGATCCGT....................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGCTCCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATACG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0
..................................................TGGGTAAACTCCCAACGATCCG........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................GGGTAAACTCCCAATGATCCGT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................GGGTAAACTCCCAATGATCCGC....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGATAAACTCCCATTGATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCTG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGTAACCTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGTAAACTCCCCATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGTAAACTCTCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
...........................GATGATGTAAACTGGCCTGTC................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TTGGGAAACTCCCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
...................................................GGGCAAACTCCCAATGATCCG........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAAGGATCA......................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGTAAAGTCCCAATGATCCT........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTGGACTCCCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................TGGGGACAGTCCCAATGATCCG........................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCCC........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0
..................................................TAGGTAAACTCCCAATGATCC......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGCTCCT........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................GATCCTTGGGTTTGAGCCCAC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGCAAACTACCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAATTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGCGTAACCTCCCAATGATCCG........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................TGGATAAACTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................TTGGTAAACTCCCAATCATCC......................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0
................................................................................................................................CGCGAAGGGCCCAATGTTTGTT.......... 22 0 1 1.00 1 0 0 0 0 1 0 0
.................................................CTGGGTAAACTCCCAATGATCCG........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTATACTCCCAATAATCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
.............................................CTTGCTGGGTAAACTCCCAATGATCCG........................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATTCG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
.................................................GTGGGTAAACTCCCAATGATCCG........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGCTAAACTCCTAATGATCTG........................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0 0
...................................................GGGTAAACACCCAATGATCCG........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGGGTAAACTCCCAATGATCCGG....................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
..................................................TGGGTAAACTCCCAAGGACCCG........................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTTAACTCCCAATGATCCG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TGGGTAAACTCCCACTTATCCG........................................................................................ 22 2 2 0.50 1 0 0 0 1 0 0 0
..................................................CGGGGAAACTCCCGATGATCCG........................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0
..................................................TGGGAAAACTCCCAACTATC.......................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0
......................................................................CGGTGTCCATGGAAGTCGGA...................................................................... 20 3 18 0.06 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGTTATATGGATATGCGTTCCACATATCTACTACATTTGACCGGACAGGGACCCATTTGAGGGTTACTAGGCCACATGTAACTTAAGCCTAGGAACCCAAACTCGGGTTCCTGTTCCTGTCATCACGGGCGCTTCCCGGGTTACAAACAATTGAGGAAAT

************************************..((((.(((((((.(((((.....(((((.(((((((............))))))).))))).....))))).)))).))).))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 M056

embryo

 M026

head

 V058

head

 V052

head

 V120

male body
......................................................................................GCCTAGGAACCCAAACTCGGGT.................................................... 22 0 1 22.00 22 9 8 3 1 1 0
......................................................................................GCCTAGGAACCCAAACTCGGG..................................................... 21 0 1 5.00 5 4 1 0 0 0 0
................................................GGACCCATTTGAGGGTTACTAG.......................................................................................... 22 0 1 4.00 4 2 1 0 1 0 0
......................................................................................GCCTAGGAACCCAAACTCGGTT.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.................................................GACCCATTTGAGGGTTACTAG.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................GCCTAGGGACCCAAACTCGGGT.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................CCACAGGCGCTTCCCGGGAT.................. 20 3 1 1.00 1 0 0 0 1 0 0
......................................................................................GCCTAGGAACCCAAACTCGG...................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................GCCTAGGAACCCAAACTCGGT..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................TCCTGTTCCTGTCATTACG................................. 19 1 1 1.00 1 0 1 0 0 0 0
................................................GGACCCATTTGAGGGTTACTA........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................CCTAGGAACCCAAACTCGGGT.................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................GCCTAGGAACCCAAACTCGCGT.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................ACGGGCGCTGCCAGGGAT.................. 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3R:23018659-23018818 + dya_42 confident CCAATATA---CCTA--------------------------------TA--------------------------------------------------------------------CGCAAGGTGTATAG----ATGA-------TGTAAACTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AATGAT-----------------------CCGGTGT--ACATTGAAT------------------------TCGGATCCTTGGGTTTGAGCCCAAGGAC----------AA-GGACAGTAGTGCCCG--CGAAGGG----CCCAA-TGTTTGTTAACTCCT--------TTA
droEre2 scaffold_4820:4569027-4569215 + der_81 confident CCAATATA---CCT------------------------ATATGTTTATGCA------------------------------TTCTTCAAG---G-------------GCT-AGCCCGCGTAAGGTGTATAG----ATGA-------TGTAAACTGGC-CTGTCCCTGGG-CAA--ACTCC-C--AATGAT-----------------------GCGGTGT--ACATAGAAT------------------------CCCGATCCTTGGGCTTCTGCCCACGGGC----------AA-GGACAGTAGTGCCCG--CGAAGGG----CCCAA-TGTTTGTTAACTCCT--------TTA
droSec2 scaffold_22:111542-111739 - dse_30 confident CCAATATA---CATACATACCTAC----ATATACACACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGATTCTGCTCTCGGGC----------AA-GGTCAGCAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTA
droSim2 3r:22893182-22893379 - dsi-mir-1001 Known_mirbase CCAATATA---CATACATACCTAC----ATATACATACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC----------AA-GGTCAGCAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTA
dm3 chr3R:23468152-23468353 - dme-mir-1001 Known_mirbase CCAATATA---CATACATACCTACATACATATACATACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC----------AA-GGTCAGTAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTA
droEug1 scf7180000409770:952510-952684 - CCAATATA---CATACA------------------TATATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTT-AGCCCTTGGAAGGTGTATAG----ATAA-------TGTAAACTGAC-CTGTCCCTAAG-AAA--CTCCC-T--AATGA------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGAC----------AA-GGACAGTAGTGCCCTCACAGAGGG----CCCAA-TGTTTGTTAACATCCT-------TTA
droBia1 scf7180000302075:1453641-1453812 + CCAAAATA---TAC--ATACC----------------TATGTGTTTATGCA------------------------------CTCTTCAAT---G-------------GCC-AGCCCTTGAGAGGTGCATAG----ATAG-------TGTAAGCTGGC-CTGCCCCAGAT-CAAGGA-TCC-C--AATGA------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGC----------AA-GGTCAGTAGAGCCCG--CAGAGGG-----CCAA-TTTTTGTTAACTCCC--------CTA
droTak1 scf7180000413872:362750-362866 - TCAAAATA-------------------------------TACATTAA-----------------------------------------------------------------------------TGTATAG----ATAA-------TA-AAGCTGAC-CTTCCCCTGAG-CAAGTATTCC-C--AATGA------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGC----------AG-GGTCAGC----------------------ACAA-CGTTTGTTAACTCCT--------TTA
droEle1 scf7180000491261:1964192-1964378 - CCGATAT-------------------------------ATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTTTAGTCCTTGAAAGGTGTATAG----ATAC-------TGTAAGCTGAC-CTGCCCCTGAG-CAA--TTCGC-C--ACAGAA-----------------------AAGGATG--AAATTTAAT------------------------C-TGAACCCTAGGACACTGCTCTTGGGC----------AA-GGACAGTACTGCCCAACCAGAGGG----CCCGA-TGTTTGTTAACTCCT--------TTA
droRho1 scf7180000779391:18287-18482 + CCGATAT-------------------------------ATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTT-AGCCCTTGGAAGGTGTATAG----ATGA-------TGTAAGCTGTC-CTGCCCCTGAG-CAA--TTCCG-C--AAAAAA-----------------------AAGGATG--AAATTGGATTA-AAA------TCA--CA-----TCTTAACCCTAGGTTTCTGCTCATGGGC----------AA-GGACAGTACTGCCCC-CCAGAGGG----CCCAA-TGTTTGTTAACTCCT--------TTA
droFic1 scf7180000453826:246826-247010 + CCGAT------------------------------TGTATGTGTTTATGCA------------------------------ATTTTCAAT---G-------------GTC-AACCCTTGGAAGTTGTATAG----ATAA-------TGTAAGCTGAT-CTGCCCAGGAG-CAA--ATCCC-TTGAAAGAT-----------------------CAGGTGT--ATATAGG-C------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGC----------AC-AGACAGTAGAGCCC---CAGAGGC----CACAA-TGTTTGTTAAATCCT--------CTA
droKik1 scf7180000302697:740328-740505 - ACTAAACA-----------------------------------------------------------------------------------------------------------------AAGTATGTTG----AGGA-------TATGCGCTGTC-CTGCCCCTGGG-CAG--ATCCC-C--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATTT-AAC-------CA--CAGC---CCCA--GCTCAGGTCACTGTCCAGGGGC----------AGAAGGCAGCA---------------G----CCCGA-TGTTTGTTAACTCCCCCTAGTCCCTA
droAna3 scaffold_13340:19221664-19221851 + CCGACATA---G-----------------------TTTATATATTTATGCA------------------------------TAGTCCAATAAGATACT---------AT--TATCCTTGGAGTGTGTATAG----ATGA-------TGTGAGCTGTC-CTGTCCCTGGG-AGG--ATCAC-C-----------------------------------TGTAG-TATTAAATTA-AA---------------------TGGAACAAAGGTCTCCCCCTAGGGGC----------AA-GGACAGCATTGGCCA--CG--AGG----CTCAA-TGTTTGTTAATTCCTT-------TTA
droBip1 scf7180000396413:3143034-3143206 - CCGACATA---G-----------------------TATATATATTTATGCA------------------------------TAGTCCAATAAGATACG---------AT--TATCCTTGGAGTGTGTATAG----ATGA-------TGTGAGCTGTC-CTGTCCTTGGG-AGG--ATCAC-C-----------------------------------TGTAG-TATTAAATTC-AA---------------------TGAAAGACAGGCCTCCGCCCAGGGGC----------CA------------------TG--AGG----CTCAA-TGTTTGTTAATTCCTT-------TTA
dp5 2:3822358-3822597 - CTAAAGCC---CCG--------------------------ATAACTATACA-CTATCCATCGGTTGAGGCTATACTATACTATC-----------------------------CCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACA-CAC---GGCAG-ATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTG------CATTCGGGTGCCGCCCCTGGGTCTGAGAGGGCTG------------------AG--AGA----GAGAA-TGTTTGTTAATTCCT--------TTA
droPer2 scaffold_7:528093-528332 + CTAAAGCC---CCG--------------------------ATAACTATACA-CTATCCATCGGTTGAGGCTACACTATACTATC-----------------------------CCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATA-CAC---GGCAG-ATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTG------CTTTCGGGTGCCGCCCCTGGGTCTGAGAGGGCTG------------------AG--AGA----GAGAA-TGTTTGTTAATTCCT--------TTA
droVir3 scaffold_12855:2154389-2154530 + ACAAAATA---AAACAACAAGTTT------------------------GTTAATTTCGGCTAGCTGAAATTTGTTTATACCCTTTCCAAT---G-------------TTAAGCCCCTTGGAAAATGTATGA----ATCT-------CGTAACAT-----------------------------------------------------------------------------TCGTAACAAGAG-------------------------------------------------------A------------------TG-TTCGCCAAA-CTTTTGTTAATTCCT--------TTA
droMoj3 scaffold_6540:32461022-32461164 + CCTATAAT------ACAG-----------------TCTATAACACAAAGCAAATTTCGGCTAGCTGAAATTGGTTTATGCTCTTTCCAAA---AGATT---------T-T-CATTTTTGGCAAGCGTATAA----TGAA-------TACCA---------------AAG-AAA--ATACC-T--A-----------------------------------------------------------------------------------------------------------------------ACACTCG--TAA--------GAGAA-GTTTTGTTAACA--------------
droGri2 scaffold_15074:2155809-2155994 + TATACAGACCACATACAAAATAAT----ACACTACAACAAATATT---GTTAATTTCGGCTAGCTGAAATTATTTGATACCCCTTCCAATAAAAAATCACCATTTGTGCT-GGCTATTGGAAAGTGTATGAATTTGTGAGGAGTTTGGTAAATTCA-------------------------------------------------------------------------------------------------------------------CTCTCAAG-------------------A------------------TG-TTAGCCAAA-CTTTTGTTAAATTCG--------TTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CCAATATA---CCTA--------------------------------TA--------------------------------------------------------------------CGCAAGGTGTATAG----ATGA-------TGTAAACTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AATGAT-----------------------CCGGTGT--ACATTGAAT------------------------TCGGATCCTTGGGTTTGAGCCCAAGGAC----------AA-GGACAGTAGTGCCCG--CGAAGGG----CCCAA-TGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CCG............................................................................................................................................221888.008881933349590190670000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AATGAT-----------------------CCG............................................................................................................................................21144.0044044000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CCGT...........................................................................................................................................23133.0033170015190000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CC.............................................................................................................................................21117.0017113200100000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AATGAT-----------------------CC.............................................................................................................................................2015.00505000000000
..................................................................................................................................................................................................................................................................GATCCTTGGGTTTGAGCCCAA.............................................................................2115.00504000100000
.......................................................................................................................................................................GG-TAA--ACTCC-C--AATGAT-----------------------CCG............................................................................................................................................2014.00404000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------C..............................................................................................................................................2014.00400400000000
........................................................................................................................................................................G-TAA--ACTCC-C--AATGAT-----------------------CCG............................................................................................................................................1912.00202000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CCT............................................................................................................................................2212.00201000100000
.......................................................................................................................................................................GG-TAA--ACTCC-C--AATGAT-----------------------C..............................................................................................................................................1811.00101000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AATGAT-----------------------CCGT...........................................................................................................................................2211.00101000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AATGAT-----------------------CCGC...........................................................................................................................................2211.00101000000000
..................................................................................................................................G----ATGA-------TGTAAACTGGC-CTGTC.................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CCC............................................................................................................................................2211.00100000010000
..................................................................................................................................................................................................................................................................GATCCTTGGGTTTGAGCCCAC.............................................................................2111.00100000100000
.....................................................................................................................................................................................................................................................................................................................CG--CGAAGGG----CCCAA-TGTTTGTT..................2211.00100000010000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AATGAT-----------------------CCG............................................................................................................................................2311.00101000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AATGAT-----------------------CCGG...........................................................................................................................................2311.00110000000000
droEre2
CCAATATA---CCT------------------------ATATGTTTATGCA------------------------------TTCTTCAAG---G-------------GCT-AGCCCGCGTAAGGTGTATAG----ATGA-------TGTAAACTGGC-CTGTCCCTGGG-CAA--ACTCC-C--AATGAT-----------------------GCGGTGT--ACATAGAAT------------------------CCCGATCCTTGGGCTTCTGCCCACGGGC----------AA-GGACAGTAGTGCCCG--CGAAGGG----CCCAA-TGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................................................TGGG-CAA--ACTCC-C--AATGAT-----------------------GCGG...........................................................................................................................................23152.0052160012330
.....................................................................................................................................................................TGGG-CAA--ACTCC-C--AATGAT-----------------------GCG............................................................................................................................................2217.0072000050
..................................................................................................................................................................................................................................................................GATCCTTGGGCTTCTGCCCACG............................................................................2215.0051002020
....................................................................................................................................................................CTGGG-CAA--ACTCC-C--AATGAT-----------------------GCG............................................................................................................................................2312.0020000020
......................................................................................................................................................................GGG-CAA--ACTCC-C--AATGAT-----------------------GCGG...........................................................................................................................................2212.0022000000
.............................................................................................G-------------GCT-AGCCCGCGTAAGGT.......................................................................................................................................................................................................................................1811.0010000010
.....................................................................................................................................................................TGGG-CAA--ACTCC-C--AATGAT-----------------------GCGT...........................................................................................................................................2311.0010000010
......................................................................................................................................................................GGG-CAA--ACTCC-C--AATGAT-----------------------GCGGT..........................................................................................................................................2311.0010000010
..................................................................................................................................................................................................................................................................GATCCTTGGGCTTCTGCCCACGT...........................................................................2311.0010000100
.....................................................................................................................................................................TGGG-CAA--ACTCC-C--AATGAT-----------------------GC.............................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGCTTCTGT.................................................................................1811.0011000000
....................................................................................................................................................................CTGGG-CAA--ACTCC-C--AATGAT-----------------------G..............................................................................................................................................2111.0011000000
droSec2
CCAATATA---CATACATACCTAC----ATATACACACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGATTCTGCTCTCGGGC----------AA-GGTCAGCAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................231913.0091312817367545
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................221595.005959013537333
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................211192.0019251127122
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGG...........................................................................241168.0016874172255
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGG...........................................................................221141.001419911229
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGT..........................................................................................................................................24190.0090442044
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCG............................................................................21185.00851532137
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCG............................................................................23182.00822215540
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................20163.0063240138
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTC.............................................................................20151.0051125034
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGT...........................................................................................................................................23127.002741508
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGA..........................................................................................................................................24120.002017111
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................22116.001615100
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTT.........................................................................................................................................25116.001601105
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................21115.001515000
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTC.............................................................................22113.00138113
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGA...........................................................................................................................................23112.00122415
..................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCGG...........................................................................23112.00129012
....................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGG...........................................................................21111.00118120
..................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCG............................................................................2219.0094302
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................2117.0074003
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGGT..........................................................................2516.0060105
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGT..........................................................................2316.0066000
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCT..............................................................................2115.0054001
..................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTC.............................................................................2114.0044000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGC..........................................................................................................................................2414.0040103
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................2213.0031011
.......................................................................................................................................................................GG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2013.0032001
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGT...........................................................................2213.0031101
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTC...............................................................................2013.0032001
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................1913.0033000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGC...........................................................................................................................................2313.0030003
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................1912.0022000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................2012.0020002
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGT..........................................................................................................................................2312.0022000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................2012.0022000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGG..........................................................................................................................................2412.0021001
....................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCG............................................................................2012.0022000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2312.0022000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGCTT----------...............................................................2411.0010001
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCT................................................................................1911.0011000
...............................................................................................................................................................................................................................................................CCCGATCCTTGGGATTCTGCTCTCGG...........................................................................2611.0010001
.......................................................................................................................................................................GG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................1911.0011000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGC..........................................................................2311.0011000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................2411.0010001
..........................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC...............................................................................................................................................................................................1911.0010001
....................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGGTA----------...............................................................2311.0010100
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CT.............................................................................................................................................2011.0011000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGA..........................................................................................................................................2311.0011000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTA.............................................................................2011.0011000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGTT----------...............................................................2411.0010001
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTTT--......................................................................................................................................2611.0010100
....................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTAAA...........................................................................2111.0010100
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCT............................................................................2111.0011000
.......................................................................................................................................................................GG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................2111.0011000
..................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTC...............................................................................1911.0011000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGG..........................................................................2311.0011000
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGA...........................................................................2411.0010001
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAT............................................................................................................................................2211.0010001
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTT.............................................................................2011.0010001
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCT..............................................................................1911.0010001
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGGTT----------...............................................................2611.0010001
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGA.......................................................................................................................................................................1911.0011000
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGC...........................................................................2211.0011000
......................................................................................................................................................................................................................................................................CTTGGGATTCTGCTCTCGG...........................................................................1911.0011000
....................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGGA..........................................................................2211.0010001
.................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCGG.............................................................................2211.0010001
...................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTTA..............................................................................1960.1710001
droSim2
CCAATATA---CATACATACCTAC----ATATACATACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC----------AA-GGTCAGCAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................2011375.0013751274755100710120000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................221308.003081461119912130330002000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................231221.0022110303001010114231801002000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................191162.001621505000700000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................211155.0015528201319870330000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTC.............................................................................22147.0047410202200000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTC.............................................................................20143.0043329001100000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGA.......................................................................................................................................................................18143.0043100053700000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................20128.0028262000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................21121.0021192000000000000000
..........................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC...............................................................................................................................................................................................19121.0021172200000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCG............................................................................21113.001360030200000101000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAC-----------------------...............................................................................................................................................1918.00880000000000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCG............................................................................2318.00831010200000100000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGC.................................................................................1817.00700001600000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTC...............................................................................2017.00730001300000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGA..........................................................................................................................................2417.00750000010100000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGG...........................................................................2216.00600030300000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGT..........................................................................................................................................2415.00500020021000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGT...........................................................................................................................................2315.00510030010000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2114.00410020100000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTC...............................................................................1814.00421000100000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCT..............................................................................2113.00321000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGA.......................................................................................................................................................................1913.00320000100000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG...........................................................................2412.00200011000000000000
.........................................................................................................................................GA-------TGTAAGCTGGC-CTGTCCCT..............................................................................................................................................................................................2112.00220000000000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................2212.00200020000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CC.............................................................................................................................................2112.00220000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAC............................................................................................................................................2212.00220000000000000000
...................................................................................................................CGC------------G----ATGA-------TGTAAGCTGGC-CT....................................................................................................................................................................................................2112.00220000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAG-----------------------...............................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTT.............................................................................2211.00110000000000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCG..............................................................................2111.00110000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................2211.00100000000010000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAG-----------------------...............................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGG..........................................................................................................................................2411.00110000000000000000
..................................................................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTCGG...........................................................................2311.00100000010000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................2011.00100010000000000000
..................................................................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTC.............................................................................2111.00100000100000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CT.............................................................................................................................................2211.00110000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGA...........................................................................................................................................2311.00100000000100000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCC............................................................................2311.00110000000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTT.............................................................................2011.00110000000000000000
.......................................................................................................................................................................GG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2011.00100010000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGA...........................................................................2211.00100000000000001000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................1911.00100010000000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................1811.00110000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAC-----------------------...............................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGC..........................................................................................................................................2411.00110000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2311.00110000000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGT...........................................................................2211.00110000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CG.............................................................................................................................................2111.00110000000000000000
dm3
CCAATATA---CATACATACCTACATACATATACATACATATGTTTATGCA------------------------------TTCTTCGAG---G-------------GTT-AGCCCGC------------G----ATGA-------TGTAAGCTGGC-CTGTCCCTGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTGG--AGATTGAAT------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC----------AA-GGTCAGTAGTGCCCG--CGAAGGG----CCCAGCTGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................2115753.005753000016100011100100000000000016522823000000000000000010010000042266000000000000000000000944000000345118013289265223121354011007041162321373232701461643812441991823316800000000000000000000100000000000000039446402832159251524061971210400000873010000101000000000000000000300408124135000140002005201000251101000001300000000000200000010000000006674857601127120000001703100000001000000001610203000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................2315608.00560800002000000100300600001100104399740100100000100100000000001020000000000000000000001100000001213114487161140179100020023120177367264199743375579683300000000000000000000500000000000000012214907900123913108564217031000002486071000308000000000000000002213373923014500001000912018792000726002100003990000000000050001316262200000423464327349263102560504231050837400016001301008000152385517372214001000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2214962.004962000080000000004002000001000034134131100100120000000000000000312060000000000000000000001800000001314005484243089178300100302110421424103007556181368911476000000000000000000004000000000000000211204014100121148414331452237600000277504300010140000000000000000013156210900100000000046083210004123012000015400000100000401002111503000012342321922550261065806020473056550025400200001300015882619332119000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................2012945.0029450000300000000020003000000001141661160000000000000000000000001000000000000000000000001200000000001102310600311150000003001005316054412066174129610124109000100007000000000001000000000000000138227010721881264182118702431500000247000000010000000000000000000000000360000000000000001130000811010000000000000000010000000000000000262230470001010000001100100000000000001601000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGATC--......................................................................................................................................261570.005700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396174000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................191327.00327000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010060100004700000000000000111000202019023140000000000000000000000000000000000003455010002811103402500000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012020000000000000000000000000000000100000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGT..........................................................................................................................................241314.00314000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020041300009000000010000003000011502011000000000000000000004000000000000000740200031101080000009000000000100000000000000000010010010100000000000000200004301000008000000000000000000000020000021172310001230300005014100002100300000000845166447000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGA.......................................................................................................................................................................181275.002750000000000000040000000000002216405100000000000000000000000000000000000000000000001000000000000000000005000000000000004060000001160240201000001000000000000000000000000000203120064223020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGG...........................................................................221184.00184000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010122320300105210000000001000600000000002100000000001000000000000000000000000012110100910207171910000015100000000000000000000000000000000000000000000000300000001100000000000000000000010000001000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CATC...........................................................................................................................................231165.00165000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011649000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCG............................................................................211159.00159000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010020000024000000000000001000001100000000000000000000000000000000000000000711030040100336000000940000000000000000000000000000100000000000000000100020000030000000000000000010100000000100000006271101320200012034000000000000000042093122000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCG............................................................................231112.0011200000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000003010000200000000000000021000010001200000000000000000000000000000000000002501001101010100000081000000000000000000000000000020000000000000000023002000002000000100000000000000000000000000000401400100100001032000000000000000041453020000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG...........................................................................24178.007800000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010002000010600000000000000100000000000200000000000000000000000000000000000068040140110751100000013000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CC.............................................................................................................................................21176.0076000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000011480000000921217000000000000000000000000000000000000130110000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGA..........................................................................................................................................24169.0069000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000001020102021000000000000000000000000000000000000130200110102010000002000000000000000000000000000001110000000000044000001000001000000001000000000000000000000000000012370033000000102000000000000000002131000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGT...........................................................................................................................................23166.0066000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101013400041000000000000000000000000000000000000020100010201010000005000000000000000000000000000000000010100000000000100100002200000000000000000000000000000000000065310111000001300100000000000000000501000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................21159.0059000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000020000007000000000000003000000101012000000000000000000000000010000000000620500221204070000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCT..............................................................................21150.00500000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000001000030000000000000020000110000000000000000000000000000000000000000002300002301020200000012000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000002120001000000100000000000000000001300000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGA...........................................................................................................................................23149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030010000100000000000000004001010300020000000000000000000000000000000000000220000010201020000002000000000000000000000000000000000000000000002000000000001100000000000000000000000000000000000031230022000000100100000001000000000100000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTC.............................................................................20139.0039000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120131001102210000003000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000013550000000000001000000000000000000210001000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTC.............................................................................22133.0033000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010011000000000000000000000100011300010000000000000000000000000000000000000330101011000110000001000000010000000000000000000000000000000000000000000200001000000000000000000000001000000000000010120000000000000000000000000000000000000000000
..........................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC...............................................................................................................................................................................................19133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000160120000000000000300000000000000000322000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAA............................................................................................................................................22132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000010000000000041000004000000000000000000000000000000000000200100220101020000001000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000013000000010000100000000000000000000000000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------C..............................................................................................................................................19131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020002123000000000000000000000000000000000000130100020006070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................22129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030020000000000000000000001100000000000000000000000000000000000000000000000180400110301000000002000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGTT.........................................................................................................................................25122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000002100000000000000000000000000000000000021200000000000200000000000000000001202011000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CA.............................................................................................................................................20122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100010001010000000000000000000000000000000000000430400010001010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAT............................................................................................................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101032000000000000000000000000000000000000310000000100000000002000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000001000000100000000000000000000100100000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CT.............................................................................................................................................21119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000000000000000000100100000001011000000000000000000000000000000000000370100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAC............................................................................................................................................22117.0017000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000040000000000000000000000001000010000000000000000000000000000000000000000000000100000000000000002000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000220000000000100000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CG.............................................................................................................................................21117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001100000000000101000000000111000100000000000000000000000000000000210100010100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------A..............................................................................................................................................20116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020104001000000000000000000000000000000000000010200000100030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGC...........................................................................................................................................23115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000100000010001010000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000021010001000000100100000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGC..........................................................................................................................................24113.0013000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000101000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010220010000000100000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------G..............................................................................................................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000100010004040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------T..............................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100042000000000000000000000000000000000000000100200100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGC.......................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000712000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TCCTTGGGTTTCTGCTCTCGG...........................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTC...............................................................................20110.0010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000000000101000101001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCT..............................................................................19110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100100000000200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000210000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGG..........................................................................................................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210001000000000000000000000000000200100000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAGGAT.........................................................................................................................................2518.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------...............................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000101020000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAGG...........................................................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000100110000000000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TCCTTGGGTTTCTGCTCTCGGT..........................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000200001000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CTGGG-TAA--ACTCC-C--AAGGAT-----------------------CATC...........................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGGG-TAA--ACTCC-C--AAGGAT-----------------------CAATC..........................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GGG-TAA--ACTCC-C--AAGGAT-----------------------CAG............................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000101020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droEug1
CCAATATA---CATACA------------------TATATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTT-AGCCCTTGGAAGGTGTATAG----ATAA-------TGTAAACTGAC-CTGTCCCTAAG-AAA--CTCCC-T--AATGA------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGAC----------AA-GGACAGTAGTGCCCTCACAGAGGG----CCCAA-TGTTTGTTAACATCCT-------TTASizeHit CountTotal NormTotal
No Reads
droBia1
CCAAAATA---TAC--ATACC----------------TATGTGTTTATGCA------------------------------CTCTTCAAT---G-------------GCC-AGCCCTTGAGAGGTGCATAG----ATAG-------TGTAAGCTGGC-CTGCCCCAGAT-CAAGGA-TCC-C--AATGA------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGC----------AA-GGTCAGTAGAGCCCG--CAGAGGG-----CCAA-TTTTTGTTAACTCCC--------CTASizeHit CountTotal NormTotal
No Reads
droTak1
TCAAAATA-------------------------------TACATTAA-----------------------------------------------------------------------------TGTATAG----ATAA-------TA-AAGCTGAC-CTTCCCCTGAG-CAAGTATTCC-C--AATGA------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGC----------AG-GGTCAGC----------------------ACAA-CGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotal
No Reads
droEle1
CCGATAT-------------------------------ATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTTTAGTCCTTGAAAGGTGTATAG----ATAC-------TGTAAGCTGAC-CTGCCCCTGAG-CAA--TTCGC-C--ACAGAA-----------------------AAGGATG--AAATTTAAT------------------------C-TGAACCCTAGGACACTGCTCTTGGGC----------AA-GGACAGTACTGCCCAACCAGAGGG----CCCGA-TGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotal
No Reads
droRho1
CCGATAT-------------------------------ATATGTTTATGCA------------------------------TTCTTCAAT---G-------------GTT-AGCCCTTGGAAGGTGTATAG----ATGA-------TGTAAGCTGTC-CTGCCCCTGAG-CAA--TTCCG-C--AAAAAA-----------------------AAGGATG--AAATTGGATTA-AAA------TCA--CA-----TCTTAACCCTAGGTTTCTGCTCATGGGC----------AA-GGACAGTACTGCCCC-CCAGAGGG----CCCAA-TGTTTGTTAACTCCT--------TTASizeHit CountTotal NormTotal
No Reads
droFic1
CCGAT------------------------------TGTATGTGTTTATGCA------------------------------ATTTTCAAT---G-------------GTC-AACCCTTGGAAGTTGTATAG----ATAA-------TGTAAGCTGAT-CTGCCCAGGAG-CAA--ATCCC-TTGAAAGAT-----------------------CAGGTGT--ATATAGG-C------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGC----------AC-AGACAGTAGAGCCC---CAGAGGC----CACAA-TGTTTGTTAAATCCT--------CTASizeHit CountTotal NormTotal
No Reads
droKik1
ACTAAACA-----------------------------------------------------------------------------------------------------------------AAGTATGTTG----AGGA-------TATGCGCTGTC-CTGCCCCTGGG-CAG--ATCCC-C--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATTT-AAC-------CA--CAGC---CCCA--GCTCAGGTCACTGTCCAGGGGC----------AGAAGGCAGCA---------------G----CCCGA-TGTTTGTTAACTCCCCCTAGTCCCTASizeHit CountTotal NormTotal
No Reads
droAna3
CCGACATA---G-----------------------TTTATATATTTATGCA------------------------------TAGTCCAATAAGATACT---------AT--TATCCTTGGAGTGTGTATAG----ATGA-------TGTGAGCTGTC-CTGTCCCTGGG-AGG--ATCAC-C-----------------------------------TGTAG-TATTAAATTA-AA---------------------TGGAACAAAGGTCTCCCCCTAGGGGC----------AA-GGACAGCATTGGCCA--CG--AGG----CTCAA-TGTTTGTTAATTCCTT-------TTASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................................................................................TGA-------TGTGAGCTGTC-CTGTCCC...............................................................................................................................................................................................2111.001100000
droBip1
CCGACATA---G-----------------------TATATATATTTATGCA------------------------------TAGTCCAATAAGATACG---------AT--TATCCTTGGAGTGTGTATAG----ATGA-------TGTGAGCTGTC-CTGTCCTTGGG-AGG--ATCAC-C-----------------------------------TGTAG-TATTAAATTC-AA---------------------TGAAAGACAGGCCTCCGCCCAGGGGC----------CA------------------TG--AGG----CTCAA-TGTTTGTTAATTCCTT-------TTASizeHit CountTotal NormTotal
No Reads
dp5
CTAAAGCC---CCG--------------------------ATAACTATACA-CTATCCATCGGTTGAGGCTATACTATACTATC-----------------------------CCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACA-CAC---GGCAG-ATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTG------CATTCGGGTGCCGCCCCTGGGTCTGAGAGGGCTG------------------AG--AGA----GAGAA-TGTTTGTTAATTCCT--------TTASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................................................................................................................................................................................................TGCCGCCCCTGGGTCTGAGA...................................................................2011.0010100000000
droPer2
CTAAAGCC---CCG--------------------------ATAACTATACA-CTATCCATCGGTTGAGGCTACACTATACTATC-----------------------------CCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATA-CAC---GGCAG-ATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTG------CTTTCGGGTGCCGCCCCTGGGTCTGAGAGGGCTG------------------AG--AGA----GAGAA-TGTTTGTTAATTCCT--------TTASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droVir3
ACAAAATA---AAACAACAAGTTT------------------------GTTAATTTCGGCTAGCTGAAATTTGTTTATACCCTTTCCAAT---G-------------TTAAGCCCCTTGGAAAATGTATGA----ATCT-------CGTAACAT-----------------------------------------------------------------------------TCGTAACAAGAG-------------------------------------------------------A------------------TG-TTCGCCAAA-CTTTTGTTAATTCCT--------TTASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................ATCT-------CGTAACAT-----------------------------------------------------------------------------TCGTAACAAGAG-------------------------------------------------------A------------------.......................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
droMoj3
CCTATAAT------ACAG-----------------TCTATAACACAAAGCAAATTTCGGCTAGCTGAAATTGGTTTATGCTCTTTCCAAA---AGATT---------T-T-CATTTTTGGCAAGCGTATAA----TGAA-------TACCA---------------AAG-AAA--ATACC-T--A-----------------------------------------------------------------------------------------------------------------------ACACTCG--TAA--------GAGAA-GTTTTGTTAACA--------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
TATACAGACCACATACAAAATAAT----ACACTACAACAAATATT---GTTAATTTCGGCTAGCTGAAATTATTTGATACCCCTTCCAATAAAAAATCACCATTTGTGCT-GGCTATTGGAAAGTGTATGAATTTGTGAGGAGTTTGGTAAATTCA-------------------------------------------------------------------------------------------------------------------CTCTCAAG-------------------A------------------TG-TTAGCCAAA-CTTTTGTTAAATTCG--------TTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:42 PM