ID:

dya_392

 Coordinate:

2L:20377328-20377478 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.7 -22.6 -22.6

Flybase annnotation

exon [dyak_GLEANR_3194:7]; CDS [Dyak\GE19420-cds]; intron [Dyak\GE19420-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACACGAAGCTTCACAGATTTATCCGCTTTCGCATCAGATTATGTTTATGGTAAGTTGTAAAATTTTTAATTTACTCGTAGAAGAAGAGCTTATATTGGATTTATTGAAAATTATGTAACAGCTAGAAGGAAGCGTTCATTAGGATCAATAGCCTAGTCTATCTGGCCATGTCCGCCTGTCTGTCCATCCGTATGAAATTAGTGATCTCAGGAAAAGCCAGAAAGTGCAAACTAAGTATCCTGATTCCAGA
**************************************************...((((((..((((((((((...((.(((.(((.....))).))).))....)))))))))).....))))))....(((.(((..((...((((..((.(((.((.....))))).))))))...))..)))...)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 V058
head
 M026
head
 SRR1275484
Male prepupae		 M056
embryo
 V052
head
...............................................................................................TTGGATTTATTGAAGACTA......................................................................................................................................... 19 2 5 3.80 19 16 0 1 2 0 0 0
.............................................................................................TCTTGGATTTATTGAAGACTA......................................................................................................................................... 21 3 4 3.50 14 13 0 0 0 1 0 0
...............................................................................................TTGGATTTATTGAAGACT.......................................................................................................................................... 18 2 20 1.20 24 8 0 0 15 0 0 1
..................................TCAGATTATGTTTATGGTAAG.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
................GATTTATCCGCTTTCGCATC....................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................AGAAGGAAGCGTTCATTAGGATC........................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................AGTGATCTCAGGAAAAGCCA............................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................TCTTGGATTTATTGAAGA............................................................................................................................................ 18 2 9 0.89 8 6 0 1 0 0 0 1
..............................................................................TAGAAGAAGATCTGATATTGC........................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ATTAGTGATGTCCGGAAAA................................... 19 2 3 0.33 1 1 0 0 0 0 0 0
................................................................................................TGGATTTATTGAAGACTA......................................................................................................................................... 18 2 11 0.27 3 3 0 0 0 0 0 0
................................................TCGTAAGATGTAAAATTTTT....................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 1 0
..............................................................................................ATTGGATTTATTGAAGACT.......................................................................................................................................... 19 2 11 0.09 1 1 0 0 0 0 0 0
.................................................................................ATGAAGAGCTTTTATTGG........................................................................................................................................................ 18 2 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................TTTTGGATTTATTGAAGACT.......................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................TGTTGGATTTATTGAAGACT.......................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0
...........................................................AAAATTTTTCATTTACTCCTC........................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

ATGTGCTTCGAAGTGTCTAAATAGGCGAAAGCGTAGTCTAATACAAATACCATTCAACATTTTAAAAATTAAATGAGCATCTTCTTCTCGAATATAACCTAAATAACTTTTAATACATTGTCGATCTTCCTTCGCAAGTAATCCTAGTTATCGGATCAGATAGACCGGTACAGGCGGACAGACAGGTAGGCATACTTTAATCACTAGAGTCCTTTTCGGTCTTTCACGTTTGATTCATAGGACTAAGGTCT
**************************************************...((((((..((((((((((...((.(((.(((.....))).))).))....)))))))))).....))))))....(((.(((..((...((((..((.(((.((.....))))).))))))...))..)))...)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M026
head
...................................................................................................................................................TTATCGGATTTGATAGACC..................................................................................... 19 2 3 0.33 1 1 0
.............................................................................................................................................TCATAGTTATCGGATTTGATA......................................................................................... 21 3 11 0.09 1 1 0
...............................................................AAAAATGGAAGGAGCATCTT........................................................................................................................................................................ 20 3 17 0.06 1 1 0
......................................................................................................................................CCAGGAATCCTAGTTTTCG.................................................................................................. 19 3 17 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:20377278-20377528 + dya_392 TACACGAAGCTTCACAGATTTAT-----------------------------------------CCGCTTTCGCATCAGAT-----------T----------------------AT------GTTTATGG-TAAGTT-GT----A-------AA---------ATTTTTA----ATTTACTCGTAG------AAG-AAGAGCTTATATTGGATTTATT--G-----AAAATTATG----------TAACAGCTAGAAGGAAGCGTT----------------------------CATTAGGATCAATAGCC-TAGTCTATCTGGCCATGTCCGCCTGTCTGTCCATC------------CGTATGAAATTAGTGATCTCAGGA-----------AAAGCCAGAAAGTGCAAA-----------CTAAGTATCCTGATTCC--AGA
droEre2 scaffold_4770:2859822-2860036 + TTTT------------GA--------------------------------------------------TTTT---------------------GAT------------------------T---------A-TTTTTTGAT----A-------AA-----------ATTTGTAAT-TTTACTCGCAA------ATT-AAAGGAGTATACTAGATTCGTT--G-----AAAAGTATT----------TAACAGGTAGAAGG------------------------------------ATCAGGATCAATAGCC-GAGTCTATCTGGCCATGTCCGTCCGTCTATCTGTCCGTC--------CGTATGGATGTCGAGATCTCAGGAGCTATA-----GAAGCTAG----TTGAGA-----------TTAGACATGCAGATTCC--AGA
droSec2 scaffold_11:2838799-2839085 + ACAA-GCAGCCGC------------------TCAGTATATT--------------------TAGCCGTCTTTACATGTACC--------CAC-AAATTTGGGC---------------------------ATTATATC-GTAAATTCGACAAAA------AATTATTTATCTTCCAGTTACTCGTAG------TAT-AAACTGGCATATTAGATTCGTT--A-----AAAACTACG----------TAAGAGGAAGAA----------------------AGTATATATGTATAAGATCAGG-CCAATAGCCGGAGTCGATCTGTGCCTGTCCGTCTGTCTGTCCGTC------------CGTATGAACGTCGAGATCTCAAGACTTGTA-----AGAGCTATAAGTTTCAGA-----------TTAAGCATACAGATTCT--AGA
droSim2 node_47644:1863-2098 + CACACAAGGCTAAAGACATCAATTGGCTTGCGCAATTTATT-------------------------------------------------------------------------------------------------------------------T--ATTCCATTTTTATAATCGTTACTCGTGG------AGT-A-AAGGGTATACTAAATACGTT--G-----ACAAGTATA----------TAACAGGCAGAAAGAAGCGTTTCCGACCATATA----------ATTCTTAATCTGGATCAATAGCC-GAATCGATATGGCCATGTCCGTCTGTCCG--------------------TATAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------TAAGGCATACCGGTTCA--AGA
dm3 chr3L:23220206-23220433 - ACGA---AACCTTATTGATTT------------------------------------------------------------------------------CGAGACAAACACTA--------------------------------T-------CTCTATGT---CTAATTATACTCATTACTCGTAA------AGT-AAAAGGGTATACTATGTACGTT--G-----AAAGGTATG----------TAACAGGCAGAAGGAT-----------TATATAAAG-------------------------TATCT-AAAACGATCTGGCCATGTTCGTCCGTCCG--------TG--------CGAATGGATGTCGAGGTCTCCGAGACTAAA-----GAAGCTAGAGAGTTAAGA-----------TTAAGTATACTGTTTCC--AGA
droEug1 scf7180000409860:21826-22115 + TAAAAGAAAC-----CGATTTCC---------C-TCTCCCGGATTGTAGTATGCGTTTT-----------C-------------------------------------------------------TACTG-CCGGTT-TT----A-------A--------TACTATTTATATCCGTTACATGTAG------AGT-AAAAGAGTATACTAGATTCGTT--G-----AAAAGTATG----------TAACAGATAGAAGGAAGCGTTTCCGAGCCTAT-----ATATATATTCTTGATCAGGATTAAAAGCG-AAGTCGACCGAGCCATATCCGTCTGTCCGTCCGTCCGTC--------CGTATGAAGGTTGAGATCTCAGGAACTATA-----TCAGATACAAAGTTGAGA-----------TTAAGCATGAAAATTTCTAAGG
droBia1 scf7180000302411:282009-282260 - CACA------------GTTTTAT------GCGCATTGTGGT--------------------TGTCAGACTCTGC---------------------------------------------------------------------------------GT--GGCAACTTTTTATACCGGTTACTCGTAG------AGT-AAAAGGGTATACTATATTCGTC--G-----GAAAGTATC----------TAACAGGTAGAAGAAAGCGTTTCCGACCCCATA-----------------ATCAGGATCACTAGCC-GAGTCGATCTAGCCA-GTCCGCCGGTCCGTCTGTC------------CGTATGAACGCTGAGATCTCGGGAACTATA-----AGAACTAGAACAGCCATA-----------CTTGGCATGCAGAAACA--TGT
droTak1 scf7180000410760:13842-14127 + AAATT------TCA------------------C-ATTCATTTATTATATTCTGAATTAATTTTTGATAATCAGG---------------------------------------------------------------------------------GA--AG-TAATATTTATACCCGTTACTCGTAG------AGT-AAAAGGGTATACTAGATTCGTG--C-----AAAAGTATG----------TAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCACTAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTC--------TGTATGAACGCTGAGATCTCAGAAACTACA-----AAAGCTAGAAGGTTGAGA-----------TTTCCCACACATATTCT--TTG
droEle1 scf7180000491199:1494294-1494569 + CTTATTAAAACTCACGGAGTAAA-----------------------------------------CCGCTTTTAAA---------------------------------------------T---------A-TACTTT-GT----T-------AAGT--C-TACATTTCTATATCCGTTACTCGAAG------AGT-AAAAGAGAATATTTTATTCTTT--A-----AAAAG--------------TTACAGGTAAATGGAAGCGTTTGCGGCCCTACAAAGTACATATGTTCTAGATAAGGATCAACAGAG-GAGTTGATCTAGTCATGTCCGTCTGTTCGTCCGTT------------CGTATAAAAGACAAGATCTTAAAAACCAAA-----AAAGCTAGAGATTTGGGA-----------CTTAACATGCAGATTCT--AGT
droRho1 scf7180000777535:2210-2507 - TATAAGAAA-TACATAAATGCGG-----------------------------------------CCGTAGTTGCGCGGCCT-----------T----------------------AC------CTTTAAGG-TACATT-GT----TAGATATAA------AATACTTTTTATACCCGTTACTCGTAG------AGT-AAAAGGGTATATTGTATTCGTG--C-----AAAAGTATG----------TAACAGCTAGAAGGATGCGTTTCCGACCCTAT---GTATATATATTCTTGATCAGGATCACTAGCC-GAGTCGATCTAGAC-TATCCGTCTGTCCGTCTGTCTGTC--------CGTATGAACGCTGAGATCTCGGAAACTATA-----AAAGCTAGAAGATTGGCA-----------TTTTGCATGTAGATTTA--AGA
droFic1 scf7180000454066:747852-748055 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTGG------AGT-AAAAGGGTATCCTATATTTATT--G-----AAAAGTATG----------AAATAGTTCGAAGGAAGCACTTGCTGTCCCAAAAAGTGTGTATATTATTGATCAGGATCTTTAGTC-GATTCGATTTATAGCTTTCTGACTGCCCGTTTGTCCGTT--------CGTATGAACGTCGAGATCTCAGGAAGTACCATATAAGAACTATAATCTTGGTA-----------T---------------------
droKik1 scf7180000302366:6255-6461 - CT---------TCACTGATTTTT-----------------------------------------GGGCTTCGGTCTGAAAT-----------T----------------------ATTATACCCCTTA------AGGT-----------------GT--AT-TAATTTTTATACCCTT--------------------GCAGGGTATTATAATTTCAGT--C-----AGAAGTTTG----------CAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTC--------TG------------------------------------------------------------------------------------
droAna3 scaffold_13266:18706302-18706363 + TCCACGAGGCTTCACAAATATAT-----------------------------------------CCGCTCTCTCATCAGAT-----------T----------------------AT------GTTTATGG-TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGT--GGA
droBip1 scf7180000396714:908923-909173 - TTGC--------------------------------------------------------------GGGTTT---------------------AATT------------------AA------GG--------GCATG-GT----T-------AACT--TCAACATTTTTATACCAGGTACTCGTAA------AGT-ACAAGGGTATATTGTAGTCGTG--T-----GAATGTATG----------TAACATAGAGAAGGAATCATCTCCGATCGCATTAAGTTTATGTATTTTTGAACAGAACACTTAGCC-GAGTTGATATAGCCGTGTCCGTCTGTCCGCCCGTC------------CGTATAAACGCGTGGATCTCAGAGACTATT-----AGAGAGAGTG----------------------CGCTTGGAGACTTC--TAC
dp5 XR_group6:11818796-11819026 - CAA--GAAGCTTCA--GATTT------------------------------------------------------------------------------GGAAACTTCCACCAAT--ATTA---------G-TACGTT-GA----A-------AAGT--GTCCAGTTCTTATGCCCGGTACTCGAAG------AGT-ACGAGTGTATTCG--ATTTTTGGTG-----AAAGT-G--GATTTGTGTG--ACACCCAGAGGGTAGCGTTTCCGACCCT------------------CCCTCAGCATCACTAGCC-GAGTCAATATAGCCATGTCTGTCTGTCCATCCGTCTGAC--------CCGATGAGCGCCTTGATCTCAGAGA-------------------------------------------------------------
droPer2 scaffold_20:1740451-1740654 - CAA--GAAGCTTCA--GATTT------------------------------------------------------------------------------GGAAACTTCCACCAAT--ATTA---------G-TACGTT-GA----A-------AAGT--GTCCAGTTCTTATGCCCGGTACTCGAAG------AGT-ACGAGTGTATTCG--ATTTTTGGTG-----AAAGT-G--GATTTGTGTG--ACACCCAGACGGTAGCGTTTCCGACCCCC-------------------CCCAGCATCACTAGCC-GAGTCGATATAGCCATGTCTGTCTGTCCATCCGTCTGA-----------------------------------------------------------------------------------------------
droWil2 scf2_1100000010324:521-821 + CATACATAAATTATCGAATTTCT-----------------------------------------CTAATTTCCCTAAAGATTTCCCGATTTA-AGTT-------------------------------------------A----A-------ATAT--ATACCATATTTATACCATACACCCATAG------GGT-GAAATGGTATATTAAAGTCGCC--A-----AAATGTATG----------TAACAGGCAGAAGGAATCTTTTCCGACCCGATAAAGTATATATATTCTTGATCAGAATCAACAGCC-GAGTCGATCTAGCCTTGTCCGTCTGTCCGTCCATTCGTCTGTC----CGTATGAACACCTAGATCTCGGAGACTATA-----AGAGCTAGAGCCACCAAA-----------TTTGGTATGTAGACTCG--TGT
droVir3 scaffold_7123:2277-2584 - TACATGTAGACACACACATTCAT-----------------------------------------GCGCGTCTGCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCATCTTTTTTATACCCTGAACCCATTAAAAATGGGT-ATAAGGGTATATTGTATATGTGCAAAATCCAAATGTATG----------TAACAGGCAGAAGGAA-----------CTCATAAAGTATATATATTCTTTATCAGCATCAATAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTA----TGTATGAGCTCAAGGATCTCAGAACCTATT-----AGGGCTAGAGACTTGAAATTTTAGATGTA--GTTGCTCCTAGTTCC---CG
droMoj3 scaffold_5868:1728-2028 - TATATGAAGATAGAACCATTTGG-----------------------------------------CTGCTTCAGTATT----------------------------------------TCTA---------T-TCCTTA-GA----A-------GCAT--GTTACATTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTT--------AAAAGTATG----------TAACAGGCAGAAGGAATCATCTCAGACCCCATAAAGTATATATATTCTTGATCAGGGCGACGAGCT-AAGTCGATTTGGCCCTGTCCGTCTGTCTGTCCGTCCGTCCGTCCGTATGTATGAACGCGTCGATTTCAGAAGATATA-----AGAGCTAGAGACTTGAAA-----------TTTTTTTTCCTAGGTCC-----
droGri2 scaffold_15203:443904-444159 + GAA-----GCTTAACAGACTGAT-------------------------------------------------------------------------------------------------------------------------------------C--GATTATTTTCTATGCCATGAACTCATTAAAAATGGGTAATAAGGGCATAATGGTTTTTTG--C-----AAATGTATG----------TAACAGGCAGAAGGAAACATCTCCAACCACCTAAAGTTTATATAATC--------GGACAACAGCC-GAGTCGATATAGCTATGTCCGTCTATCCGTCCGCCCGTCCATC----TGTATGAACACGAAGATCTCAGAGACGATA-----AGAC--------ATCAAATTTGAAA----TATA-GGTCCTCGTATA--CGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TACACGAAGCTTCACAGATTTAT-----------------------------------------CCGCTTTCGCATCAGAT-----------T----------------------AT------GTTTATGG-TAAGTT-GT----A-------AA---------ATTTTTA----ATTTACTCGTAG------AAG-AAGAGCTTATATTGGATTTATT--G-----AAAATTATG----------TAACAGCTAGAAGGAAGCGTT----------------------------CATTAGGATCAATAGCC-TAGTCTATCTGGCCATGTCCGCCTGTCTGTCCATC------------CGTATGAAATTAGTGATCTCAGGA-----------AAAGCCAGAAAGTGCAAA-----------CTAAGTATCCTGATTCC--AGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................TCAGAT-----------T----------------------AT------GTTTATGG-TAAG......................................................................................................................................................................................................................................................................................................................2111.00100000100000
................GATTTAT-----------------------------------------CCGCTTTCGCATC.................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................AGAAGGAAGCGTT----------------------------CATTAGGATC.............................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................AGTGATCTCAGGA-----------AAAGCCA............................................2011.00100000010000
droEre2
TTTT------------GA--------------------------------------------------TTTT---------------------GAT------------------------T---------A-TTTTTTGAT----A-------AA-----------ATTTGTAAT-TTTACTCGCAA------ATT-AAAGGAGTATACTAGATTCGTT--G-----AAAAGTATT----------TAACAGGTAGAAGG------------------------------------ATCAGGATCAATAGCC-GAGTCTATCTGGCCATGTCCGTCCGTCTATCTGTCCGTC--------CGTATGGATGTCGAGATCTCAGGAGCTATA-----GAAGCTAG----TTGAGA-----------TTAGACATGCAGATTCC--AGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................T-AAAGGAGTATACTAGATTCG.....................................................................................................................................................................................................................................2130.3311000000
.......................................................................................................................................................................................................AGGAGTATACTAGATTCGTT--G-----...........................................................................................................................................................................................................................2130.3310000100
droSec2
ACAA-GCAGCCGC------------------TCAGTATATT--------------------TAGCCGTCTTTACATGTACC--------CAC-AAATTTGGGC---------------------------ATTATATC-GTAAATTCGACAAAA------AATTATTTATCTTCCAGTTACTCGTAG------TAT-AAACTGGCATATTAGATTCGTT--A-----AAAACTACG----------TAAGAGGAAGAA----------------------AGTATATATGTATAAGATCAGG-CCAATAGCCGGAGTCGATCTGTGCCTGTCCGTCTGTCTGTCCGTC------------CGTATGAACGTCGAGATCTCAAGACTTGTA-----AGAGCTATAAGTTTCAGA-----------TTAAGCATACAGATTCT--AGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
CACACAAGGCTAAAGACATCAATTGGCTTGCGCAATTTATT-------------------------------------------------------------------------------------------------------------------T--ATTCCATTTTTATAATCGTTACTCGTGG------AGT-A-AAGGGTATACTAAATACGTT--G-----ACAAGTATA----------TAACAGGCAGAAAGAAGCGTTTCCGACCATATA----------ATTCTTAATCTGGATCAATAGCC-GAATCGATATGGCCATGTCCGTCTGTCCG--------------------TATAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------TAAGGCATACCGGTTCA--AGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................T--G-----ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................26123.002300000096800000000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGCAGA.............................................................................................................................................................................................27110.001000000011510020000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGC................................................................................................................................................................................................2418.00800000031010030000
...........................................................................................................................................................................................................................................................................TCCGACCATATA----------ATTCTTAATCTGGA...............................................................................................................................................2618.00800000010150010000
................................................................................................................................................................................................................................................................................................................CAATAGCC-GAATCGATATGGCCATG....................................................................................................................2515.00500000000005000000
..........................................................................................................................................................................................................................................................................................................CTGGATCAATAGCC-GAATCGATATGGC........................................................................................................................2715.00500000032000000000
............................................................................................................................................................................................................................................................................................................................................................................TAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------......................2514.00400000022000000000
...................................................................................................................................................................................................................................................................................................................TAGCC-GAATCGATATGGCCATGTCCGTC..............................................................................................................2814.00400000010210000000
...................................................................................................................................................................................................................................................................................TATA----------ATTCTTAATCTGGATCAATAGC.......................................................................................................................................2614.00400000000220000000
.......................................................................................................................................................................TTTATAATCGTTACTCGTGG------AGT-A-A......................................................................................................................................................................................................................................................2513.00300000021000000000
........................................................................................................................................................................................................................................TATA----------TAACAGGCAGAAAGAAGCGTT...................................................................................................................................................................................2513.00300000000003000000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGCA...............................................................................................................................................................................................2513.00300000002000010000
........................................................................................................................................................................................................................................TATA----------TAACAGGCAGAAAGAAGCGT....................................................................................................................................................................................2413.00300000000003000000
........................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCG--------------------TATAAACGTT..........................................................................2422.00400200010100000000
...................................................................................................................................................................................................................................................................................................................TAGCC-GAATCGATATGGCCATGT...................................................................................................................2312.00200000000000020000
.....................................................................................................................................................................................TCGTGG------AGT-A-AAGGGTATACTAAATA.......................................................................................................................................................................................................................................2612.00200000000002000000
.........................................................................................................................................................................TATAATCGTTACTCGTGG------AGT-A-AAGG...................................................................................................................................................................................................................................................2612.00200000020000000000
..........................................................................................................................................................................................................................................................................................................CTGGATCAATAGCC-GAATCGATA............................................................................................................................2312.00200000001010000000
........................................................................................................................................................................................................................................TATA----------TAACAGGCAGAAAGAAGCGTTTC.................................................................................................................................................................................2712.00200000000002000000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGCAG..............................................................................................................................................................................................2612.00200000000001010000
......................................................................................................................................................................TTTTATAATCGTTACTCGTGG------AGT-A-A......................................................................................................................................................................................................................................................2612.00200000010010000000
..........................................................................................................................................................................................................................................................................................................................................................................TATAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------......................2712.00200000001001000000
......................................................................................................................................................................................................................ACGTT--G-----ACAAGTATA----------TAACAGGCA...............................................................................................................................................................................................2412.00200000020000000000
...........................................................................................................................................................................................................................................................................................................TGGATCAATAGCC-GAATCGATATGG.........................................................................................................................2512.00200000001010000000
....................................................................................................................................................................................................................................................................................................................AGCC-GAATCGATATGGCCAT.....................................................................................................................2021.50300000000003000000
....................................................................................................................................................................................................................ATACGTT--G-----ACAAGTATA----------TAACA...................................................................................................................................................................................................2211.00100000000010000000
.....................................................................................................................................................................................TCGTGG------AGT-A-AAGGGTATACTAAA.........................................................................................................................................................................................................................................2411.00100000000001000000
........................................................................................................................................................................................TGG------AGT-A-AAGGGTATACT............................................................................................................................................................................................................................................1811.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGA-----------TAAGGCATACCGGTTCA--AGA2511.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................TCCCTCCCAG------------------------GTTGAGA-----------TAAGGCATACCGG.........3011.00100000001000000000
...............................................................................................................................................................................................................................................................................................................TCAATAGCC-GAATCGATATGG.........................................................................................................................2111.00100000010000000000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGCT...............................................................................................................................................................................................2511.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................GCC-GAATCGATATGGCCATGTCCGTC..............................................................................................................2621.00200000001010000000
...................................................................................................................................................................................................................................................................GAAGCGTTTCCGACCATATA----------ATTCTT.......................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................C-GAATCGATATGGCCATGTCCGTCTG............................................................................................................2611.00100010000000000000
.........................................................................................................................................................................................................................................................................TTTCCGACCATATA----------ATTCTTAA.....................................................................................................................................................2211.00100000000000010000
...........................................................................................................................................................................TAATCGTTACTCGTGG------AGT-A-AAGG...................................................................................................................................................................................................................................................2411.00100000001000000000
...................................................................................................................................................................CATTTTTATAATCGTTACTCGTGG------AG...........................................................................................................................................................................................................................................................2611.00100000001000000000
.....AAGGCTAAAGACATCAATTGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
...................................................................................................................................................................................................................................ACAAGTATA----------TAACAGGCAGAAAGAA........................................................................................................................................................................................2511.00100000000000010000
........................................................................................................................................................................................TGG------AGT-A-AAGGGTATACTAA..........................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................ATAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------......................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................AACGTTTCCCTCCCAG------------------------GTTGAGA-----------TA....................2511.00100000000100000000
........................................................................................................................................................................................TGG------AGT-A-AAGGGTATACTAAATACGT....................................................................................................................................................................................................................................2611.00100000000001000000
..................................................................................................................................................................................TACTCGTGG------AGT-A-AAGGGTATACTAAA.........................................................................................................................................................................................................................................2711.00100000000001000000
.........................................................................................................................................................................................................GGGTATACTAAATACGTT--G-----ACAAGT.....................................................................................................................................................................................................................2511.00100000000010000000
................................................................................................................................................................................................................................................................................................................CAATAGCC-GAATCGATATGGCCAT.....................................................................................................................2411.00100000000000010000
......................................................................................................................................................................................................................ACGTT--G-----ACAAGTATA----------TAACAGGCAGAA............................................................................................................................................................................................2711.00100000000000010000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGGCAGAA............................................................................................................................................................................................2811.00100000000100000000
......................................................................................................................................................................................CGTGG------AGT-A-AAGGGTATACTAAATACGT....................................................................................................................................................................................................................................2811.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................TCTGTCCG--------------------TATAAACGTTTCCCTCCCAG------------------------........................................2811.00100000000100000000
.........................................................................................................................................................................................................................TT--G-----ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................2711.00100000001000000000
.........................................................................................................................................................................................................................................................................TTTCCGACCATATA----------ATTCTTAATCTGGA...............................................................................................................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................TCTGGATCAATAGCC-GAATCGATATGGC........................................................................................................................2811.00100000001000000000
..........................................................................................................................................................................................................................T--G-----ACAAGTATA----------TAACAGGCAGAAAGAA........................................................................................................................................................................................2711.00100000001000000000
.....................................................................................................................................................................................................A-AAGGGTATACTAAATACGTT--G-----AC.........................................................................................................................................................................................................................2411.00100000000010000000
.......................................................................................................................................................................................GTGG------AGT-A-AAGGGTATACTAAATA.......................................................................................................................................................................................................................................2411.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................CGTCTGTCCG--------------------TATAAACGTTTCCCTC....................................................................2611.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCCTCCCAG------------------------GTTGAGA-----------TAAGGC................2711.00100000000001000000
..........................................................................................................................................................................................................................................TA----------TAACAGGCAGAAAGAAGCGTTTCCGA..............................................................................................................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCG--------------------TATAAACGTT..........................................................................3011.00100000001000000000
.......................................................................................................................................................................................................................CGTT--G-----ACAAGTATA----------TAACAGGCAGA.............................................................................................................................................................................................2511.00100000001000000000
.......................................................................................................................................................................................................................CGTT--G-----ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................2911.00100000010000000000
...................................................................................................................................................................................................................................ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................2411.00100000000100000000
..................................................................................................................................................................................................................................................................................................TTCTTAATCTGGATCAATAGCC-GAATC................................................................................................................................2711.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCG--------------------TATAAACGTT..........................................................................2611.00100000010000000000
..............................................................................................................................................................................................................TACTAAATACGTT--G-----ACAAGTATA----------TA......................................................................................................................................................................................................2511.00100000000100000000
............................................................................................................................................................................................................................................................................................................................TCGATATGGCCATGTCCGTCTGTCCG--------------------T...................................................................................2721.00200000000020000000
....................................................................................................................................................................................................................................................................................................................................................................................TCCCTCCCAG------------------------GTTGAGA-----------TAAGGCA...............2411.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................CG--------------------TATAAACGTTTCCCTCCCAG------------------------GTTGAGA-----------......................2911.00100000001000000000
...................................................................................................................................................................................................................................................................................TATA----------ATTCTTAATCTGGATCAATA.........................................................................................................................................2411.00100000000000010000
........................................................................................................................................................................................................................GTT--G-----ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................2811.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................TATAAACGTTTCCCTCCCAG------------------------GTTGA...................................2511.00100000000010000000
.............................................................................................................................................................................................................................G-----ACAAGTATA----------TAACAGGCAGAAAGA.........................................................................................................................................................................................2511.00100000010000000000
.................................................................................................................................................................................................................................................................AAGAAGCGTTTCCGACCATATA----------ATTCT........................................................................................................................................................2711.00100000000010000000
...............................................................................................................................................................................................................................................................................................................TCAATAGCC-GAATCGATATGGCCAT.....................................................................................................................2511.00100000000001000000
...........................................................................................................................................................................................................................................................................................................TGGATCAATAGCC-GAATCGATATGGC........................................................................................................................2611.00100000001000000000
.....................................................................................................................................................................................................................TACGTT--G-----ACAAGTATA----------TAACAGG.................................................................................................................................................................................................2311.00100000001000000000
.....................................TATT-------------------------------------------------------------------------------------------------------------------T--ATTCCATTTTTATAATCGTT...........................................................................................................................................................................................................................................................................2511.00100000000010000000
.................................................................................................................................................................TCCATTTTTATAATCGTTACTCGTGG------A............................................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................ACAGGCAGAAAGAAGCGTT...................................................................................................................................................................................1970.57400000000004000000
.....................................................................................................................................................................................................................................................................................................................GCC-GAATCGATATGGCCATGTC..................................................................................................................2220.50100000000001000000
..........................................................................................................................................................................................................................................................................................................................AATCGATATGGCCATGTCCGT...............................................................................................................2120.50100000010000000000
.....................................................................................................................................................................................................................................................................................................................GCC-GAATCGATATGGCCATGT...................................................................................................................2120.50100000000001000000
....................................................................................................................................................................................................................................................................................................................AGCC-GAATCGATATGGCCATG....................................................................................................................2120.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCG--------------------TATAAACG............................................................................2330.33100000010000000000
.......................................................................................................................................................................................................................................................AACAGGCAGAAAGAAGCGTT...................................................................................................................................................................................2070.29200000000002000000
........................................................................................................................................................................................................................................................ACAGGCAGAAAGAAGCGT....................................................................................................................................................................................1880.25200000000002000000
......................................................................................................................................................................................................................................................TAACAGGCAGAAAGAAGCGTTTCCGA..............................................................................................................................................................................2650.20100000000001000000
.............................................................................................................................................................................................................................................................CAGAAAGAAGCGTTT..................................................................................................................................................................................15160.19300000000003000000
..........................................................................................................................................................................................................................................................AGGCAGAAAGAAGCGT....................................................................................................................................................................................16110.18200000000002000000
............................................................................................................................................................................................................................................................GCAGAAAGAAGCGTTTCCGACCATA.........................................................................................................................................................................2560.17100000001000000000
......................................................................................................................................................................................................................................................TAACAGGCAGAAAGAAGCGTTTCC................................................................................................................................................................................2470.14100000000001000000
........................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCG--------------------TATA................................................................................18100.10100000001000000000
..........................................................................................................................................................................................................................................................AGGCAGAAAGAAGCGTT...................................................................................................................................................................................17100.10100000000001000000
..........................................................................................................................................................................................................................................................AGGCAGAAAGAAGCGTTT..................................................................................................................................................................................18100.10100000000001000000
....................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCG--------------------TA..................................................................................20200.10200000020000000000
...........................................................................................................................................................................................................................................................GGCAGAAAGAAGCGTTTC.................................................................................................................................................................................18120.08100000000001000000
...........................................................................................................................................................................................................................................................GGCAGAAAGAAGCGT....................................................................................................................................................................................15130.08100000000001000000
..............................................................................................................................................................................................................................................................AGAAAGAAGCGTTTC.................................................................................................................................................................................15190.05100000000001000000
...................................................................................................................................................................................................................................................................GAAGCGTTTCCGACC............................................................................................................................................................................15200.05100000000001000000
dm3
ACGA---AACCTTATTGATTT------------------------------------------------------------------------------CGAGACAAACACTA--------------------------------T-------CTCTATGT---CTAATTATACTCATTACTCGTAA------AGT-AAAAGGGTATACTATGTACGTT--G-----AAAGGTATG----------TAACAGGCAGAAGGAT-----------TATATAAAG-------------------------TATCT-AAAACGATCTGGCCATGTTCGTCCGTCCG--------TG--------CGAATGGATGTCGAGGTCTCCGAGACTAAA-----GAAGCTAGAGAGTTAAGA-----------TTAAGTATACTGTTTCC--AGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................ACGTT--G-----AAAGGTATG----------TAACAGGC................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TG--------CGAATGGATGTCGAGGTCTCTT................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ACGTT--G-----AAAGGTATG----------TAACAGGCAGA.............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CTCCGAGACTAAA-----GAAGC..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--G-----AAAGGTATG----------TAACAGGCAG..............................................................................................................................................................................................2141.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TCCGTCCG--------TG--------CGAATGGATGTCGAGG......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TACGTT--G-----AAAGGTATG----------TAACAGGC................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCT-AAAACGATCTGGCCATGTTCGTCCG............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TT--G-----AAAGGTATG----------TAACAGGCAGAAGGAT-----------.............................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCCGAGACTAAA-----GAAGCT.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CATGTTCGTCCGTCCG--------TG--------CGAATG................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCCGAGACTAAA-----GAAGCTAGAGAGT......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATTT------------------------------------------------------------------------------CGAGACAAACACTA--------------------------------.............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GAGACTAAA-----GAAGCTAGAGAG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................ATCTGGCCATGTTCGTCCGTC..........................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TACTCGTAA------AGT-AAAAGGGTA................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--G-----AAAGGTATG----------TAACAGGCAGAAGGA.........................................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTATG----------TAACAGGCAGAAGGAT-----------.............................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................AAGGTATG----------TAACAGGCAGAAG...........................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GTAA------AGT-AAAAGGGTATACT............................................................................................................................................................................................................................................20150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CGTAA------AGT-AAAAGGGTATACT............................................................................................................................................................................................................................................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000
...................................................................................................................................................................................ACTCGTAA------AGT-AAAAGGG..................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CGTAA------AGT-AAAAGGGTAT...............................................................................................................................................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................CGTT--G-----AAAGGTATG----------TAACAGA.................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................TAA------AGT-AAAAGGGTATACTA...........................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AA------AGT-AAAAGGGTATACTA...........................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TAAAAGAAAC-----CGATTTCC---------C-TCTCCCGGATTGTAGTATGCGTTTT-----------C-------------------------------------------------------TACTG-CCGGTT-TT----A-------A--------TACTATTTATATCCGTTACATGTAG------AGT-AAAAGAGTATACTAGATTCGTT--G-----AAAAGTATG----------TAACAGATAGAAGGAAGCGTTTCCGAGCCTAT-----ATATATATTCTTGATCAGGATTAAAAGCG-AAGTCGACCGAGCCATATCCGTCTGTCCGTCCGTCCGTC--------CGTATGAAGGTTGAGATCTCAGGAACTATA-----TCAGATACAAAGTTGAGA-----------TTAAGCATGAAAATTTCTAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
CACA------------GTTTTAT------GCGCATTGTGGT--------------------TGTCAGACTCTGC---------------------------------------------------------------------------------GT--GGCAACTTTTTATACCGGTTACTCGTAG------AGT-AAAAGGGTATACTATATTCGTC--G-----GAAAGTATC----------TAACAGGTAGAAGAAAGCGTTTCCGACCCCATA-----------------ATCAGGATCACTAGCC-GAGTCGATCTAGCCA-GTCCGCCGGTCCGTCTGTC------------CGTATGAACGCTGAGATCTCGGGAACTATA-----AGAACTAGAACAGCCATA-----------CTTGGCATGCAGAAACA--TGTSizeHit CountTotal NormTotal
No Reads
droTak1
AAATT------TCA------------------C-ATTCATTTATTATATTCTGAATTAATTTTTGATAATCAGG---------------------------------------------------------------------------------GA--AG-TAATATTTATACCCGTTACTCGTAG------AGT-AAAAGGGTATACTAGATTCGTG--C-----AAAAGTATG----------TAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCACTAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTC--------TGTATGAACGCTGAGATCTCAGAAACTACA-----AAAGCTAGAAGGTTGAGA-----------TTTCCCACACATATTCT--TTGSizeHit CountTotal NormTotal
No Reads
droEle1
CTTATTAAAACTCACGGAGTAAA-----------------------------------------CCGCTTTTAAA---------------------------------------------T---------A-TACTTT-GT----T-------AAGT--C-TACATTTCTATATCCGTTACTCGAAG------AGT-AAAAGAGAATATTTTATTCTTT--A-----AAAAG--------------TTACAGGTAAATGGAAGCGTTTGCGGCCCTACAAAGTACATATGTTCTAGATAAGGATCAACAGAG-GAGTTGATCTAGTCATGTCCGTCTGTTCGTCCGTT------------CGTATAAAAGACAAGATCTTAAAAACCAAA-----AAAGCTAGAGATTTGGGA-----------CTTAACATGCAGATTCT--AGTSizeHit CountTotal NormTotal
No Reads
droRho1
TATAAGAAA-TACATAAATGCGG-----------------------------------------CCGTAGTTGCGCGGCCT-----------T----------------------AC------CTTTAAGG-TACATT-GT----TAGATATAA------AATACTTTTTATACCCGTTACTCGTAG------AGT-AAAAGGGTATATTGTATTCGTG--C-----AAAAGTATG----------TAACAGCTAGAAGGATGCGTTTCCGACCCTAT---GTATATATATTCTTGATCAGGATCACTAGCC-GAGTCGATCTAGAC-TATCCGTCTGTCCGTCTGTCTGTC--------CGTATGAACGCTGAGATCTCGGAAACTATA-----AAAGCTAGAAGATTGGCA-----------TTTTGCATGTAGATTTA--AGASizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTGG------AGT-AAAAGGGTATCCTATATTTATT--G-----AAAAGTATG----------AAATAGTTCGAAGGAAGCACTTGCTGTCCCAAAAAGTGTGTATATTATTGATCAGGATCTTTAGTC-GATTCGATTTATAGCTTTCTGACTGCCCGTTTGTCCGTT--------CGTATGAACGTCGAGATCTCAGGAAGTACCATATAAGAACTATAATCTTGGTA-----------T---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CT---------TCACTGATTTTT-----------------------------------------GGGCTTCGGTCTGAAAT-----------T----------------------ATTATACCCCTTA------AGGT-----------------GT--AT-TAATTTTTATACCCTT--------------------GCAGGGTATTATAATTTCAGT--C-----AGAAGTTTG----------CAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTC--------TG------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCCACGAGGCTTCACAAATATAT-----------------------------------------CCGCTCTCTCATCAGAT-----------T----------------------AT------GTTTATGG-TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGT--GGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGC--------------------------------------------------------------GGGTTT---------------------AATT------------------AA------GG--------GCATG-GT----T-------AACT--TCAACATTTTTATACCAGGTACTCGTAA------AGT-ACAAGGGTATATTGTAGTCGTG--T-----GAATGTATG----------TAACATAGAGAAGGAATCATCTCCGATCGCATTAAGTTTATGTATTTTTGAACAGAACACTTAGCC-GAGTTGATATAGCCGTGTCCGTCTGTCCGCCCGTC------------CGTATAAACGCGTGGATCTCAGAGACTATT-----AGAGAGAGTG----------------------CGCTTGGAGACTTC--TACSizeHit CountTotal NormTotal
No Reads
dp5
CAA--GAAGCTTCA--GATTT------------------------------------------------------------------------------GGAAACTTCCACCAAT--ATTA---------G-TACGTT-GA----A-------AAGT--GTCCAGTTCTTATGCCCGGTACTCGAAG------AGT-ACGAGTGTATTCG--ATTTTTGGTG-----AAAGT-G--GATTTGTGTG--ACACCCAGAGGGTAGCGTTTCCGACCCT------------------CCCTCAGCATCACTAGCC-GAGTCAATATAGCCATGTCTGTCTGTCCATCCGTCTGAC--------CCGATGAGCGCCTTGATCTCAGAGA-------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............CA--GATTT------------------------------------------------------------------------------GGAAACTTCCACCA.............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................G--ATTTTTGGTG-----AAAGT-G--GAT...............................................................................................................................................................................................................2060.1710100000000
droPer2
CAA--GAAGCTTCA--GATTT------------------------------------------------------------------------------GGAAACTTCCACCAAT--ATTA---------G-TACGTT-GA----A-------AAGT--GTCCAGTTCTTATGCCCGGTACTCGAAG------AGT-ACGAGTGTATTCG--ATTTTTGGTG-----AAAGT-G--GATTTGTGTG--ACACCCAGACGGTAGCGTTTCCGACCCCC-------------------CCCAGCATCACTAGCC-GAGTCGATATAGCCATGTCTGTCTGTCCATCCGTCTGA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................GAGTGTATTCG--ATTTTTGGT.................................................................................................................................................................................................................................2011.001100000
..........TTCA--GATTT------------------------------------------------------------------------------GGAAACTTC..................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................................TAGCC-GAGTCGATATAGCCATGT...................................................................................................................23200.051000001
droWil2
CATACATAAATTATCGAATTTCT-----------------------------------------CTAATTTCCCTAAAGATTTCCCGATTTA-AGTT-------------------------------------------A----A-------ATAT--ATACCATATTTATACCATACACCCATAG------GGT-GAAATGGTATATTAAAGTCGCC--A-----AAATGTATG----------TAACAGGCAGAAGGAATCTTTTCCGACCCGATAAAGTATATATATTCTTGATCAGAATCAACAGCC-GAGTCGATCTAGCCTTGTCCGTCTGTCCGTCCATTCGTCTGTC----CGTATGAACACCTAGATCTCGGAGACTATA-----AGAGCTAGAGCCACCAAA-----------TTTGGTATGTAGACTCG--TGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................ATA-----AGAGCTAGAGCCACCAAA-----------TTTGG.................26201.0020000200
................................................................................................................................................................................................................................................................................................................................................................TGTC----CGTATGAACACCTAGATCTCG.................................................................25200.40808000
......................................................................................................................................................................................................................................TGTATG----------TAACAGGCAGAAGGAATC......................................................................................................................................................................................24200.30600060
...........................................................................................................................................................................TACCATACACCCATAG------GGT-GAAATG...................................................................................................................................................................................................................................................25200.25505000
...........................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCTTGTCCGTC..............................................................................................................21200.15303000
.................................................................................................................................................................................................................................................................................................................................................................................................CTATA-----AGAGCTAGAGCCACCAAA-----------T.....................24200.15303000
......................................................................................................................................................................................................................................TGTATG----------TAACAGGCAGAAGGAAT.......................................................................................................................................................................................23200.15300030
......................................................................................................................................................................................................................................................TAACAGGCAGAAGGAATCTTTTCCG...............................................................................................................................................................................2570.14100010
.....................................................................................................................................................................................................................................ATGTATG----------TAACAGGCAGAAGGAATC......................................................................................................................................................................................25200.10200020
....................................................................................................................................................................................................................................................................................................................AGCC-GAGTCGATCTAGCCTT.....................................................................................................................20200.10202000
...............................................................................................................................................................................................................................................................................................................TCAACAGCC-GAGTCGATCTAGCCTTG....................................................................................................................26200.10200020
..........................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCTTGTCCGT...............................................................................................................21200.10201100
.......................................................................................................................................................................................................................................GTATG----------TAACAGGCAGAAGGAATC......................................................................................................................................................................................23200.10202000
.............................................................................................................................................................................................................................A-----AAATGTATG----------TAACAGGCAGAAGGAAT.......................................................................................................................................................................................27200.10201010
...................................................................................................................................................................................................................................................................................................................CAGCC-GAGTCGATCTAGCCTT.....................................................................................................................21200.10201100
...................................................................................................................................................................................................................................AAATGTATG----------TAACAGGCAGAAGGAATC......................................................................................................................................................................................27190.05100010
........................................................................................................................................................................................................................................TATG----------TAACAGGCAGAAGGAATC......................................................................................................................................................................................22200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................ACTATA-----AGAGCTAGAGCCACCA...................................22200.05100010
......................................................................................................................................................................................................................................................................................................................CC-GAGTCGATCTAGCCTTGTC..................................................................................................................21200.05101000
..............................................................................................................................................................................................................................................................................................................ATCAACAGCC-GAGTCGATCTAGCCT......................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................GACTATA-----AGAGCTAGAGCCACC....................................22200.05100010
................................................................................................................................................................................TACACCCATAG------GGT-GAAATGGTATAT.............................................................................................................................................................................................................................................26200.05101000
...................................................................................................................................................................................................................................AAATGTATG----------TAACAGGCAGAAGGAAT.......................................................................................................................................................................................26200.05100010
...............................................................................................................................................................................................................................................................................................................TCAACAGCC-GAGTCGATCTAG.........................................................................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................CAACAGCC-GAGTCGATCTAGC........................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCCACCAAA-----------TTTGGTATGTAGACT.......28200.05101000
........................................................................................................................................................................................TAG------GGT-GAAATGGTATATTAA..........................................................................................................................................................................................................................................21200.05100100
....................................................................................................................................................................................................................................................................................................................AGCC-GAGTCGATCTAGCCTTGTCCGT...............................................................................................................26200.05100010
...................................................................................................................................................................................................................................................................................................................................AGCCTTGTCCGTCTGTCCGTC......................................................................................................21200.05101000
..................................................................................................................................................................................................................................................................................................................ACAGCC-GAGTCGATCTAGCCTT.....................................................................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................CAACAGCC-GAGTCGATCTAG.........................................................................................................................20200.05100010
.................................................................................................................................................................................................................................................................................................................................CTAGCCTTGTCCGTCTGTCCG........................................................................................................21200.05110000
....................................................................................................................................................................ATATTTATACCATACACCCATAG------GG...........................................................................................................................................................................................................................................................25200.05101000
...........................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGAA...............................................................................................................................................20200.05100010
.................................................................................................................................................................................................................................................................................................................AACAGCC-GAGTCGATCTAGCCTTGTCC.................................................................................................................27200.05100100
..................................................................................................................................................................................................................................................................................................................................TAGCCTTGTCCGTCTGTCCGT.......................................................................................................21200.05101000
droVir3
TACATGTAGACACACACATTCAT-----------------------------------------GCGCGTCTGCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCATCTTTTTTATACCCTGAACCCATTAAAAATGGGT-ATAAGGGTATATTGTATATGTGCAAAATCCAAATGTATG----------TAACAGGCAGAAGGAA-----------CTCATAAAGTATATATATTCTTTATCAGCATCAATAGCC-GAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTA----TGTATGAGCTCAAGGATCTCAGAACCTATT-----AGGGCTAGAGACTTGAAATTTTAGATGTA--GTTGCTCCTAGTTCC---CGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................TCCAAATGTATG----------TAACAGGCAGAAG...........................................................................................................................................................................................25206.2012400000000000000000000000000124000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTA--GT..................24205.901180010000100210300000000001151016120010401071330000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTA--GTT.................25202.9559000000011006000000000000151381000002000012000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGTA--GT..................26201.70340010000020000310000000000101000002040000100000000000000000000000
........................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTATAT.............................................................................................................................................................................................................................................24200.55110000000000000000000000000000000110000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTA--GTTGC...............27200.306000000000000000000000000101200000010100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTA--G...................23200.306000000000000000000000000000000000000600000000000000000000000000
........................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTATATTGTA.........................................................................................................................................................................................................................................28200.255000000000000500000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATATTCTTTATCAGCATCAATAGCC-G....................................................................................................................................2780.252000000000000000000000000000000100010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATATTCTTTATCAGCATCAATAGCC-.....................................................................................................................................2690.222000000000000000000000000100000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAGCC-GAGTCGATCTAGCCATGTCCGTC..............................................................................................................28200.204000000000000000000000000000000000000000000000000000000000000004
..................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAGCTCAAGGATCTCAGAACC............................................................28200.204000000000000000000000000220000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATATTCTTTATCAGCATCAATAG........................................................................................................................................24110.182000000000000000000000000000000000010100000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATATTCTTTATCAGCATCAATAG........................................................................................................................................23120.172000000000000000000000000200000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTA--GTTG................26200.153000000000000000000000000000000000021000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGTA--GTT.................27200.153000000001000000000000000001000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGT.......................23200.153000000030000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TTCTTTATCAGCATCAATAGCC-GAGTCG...............................................................................................................................2870.141000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................TCTTTATCAGCATCAATAGCC-G....................................................................................................................................2290.111000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................TATATATTCTTTATCAGCATCAATAG........................................................................................................................................2690.111000000000000000000000000000000000000100000000000000000000000000
............................................................................CGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AAT..................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000002000000000000000000000000000000000000
...........................................................................TCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCA............................................................................................................................................................................................................................................................................................27200.102000000000000000000001000001000000000000000000000000000000000000
............................................................................CGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCA............................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTG............................................................................................................22200.102000000000000000000000000000000000000002000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAGCTCAAGGATCTCAGAAC.............................................................27200.102000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACTTGAAATTTTAGATGTA--GTT.................26200.102000000001000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGAAATTTTAGATGTA--GT..................21200.102000000002000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAATTTTAGATGTA--GTTGC...............25200.102000000000000000000000000000100000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCC-GAGTCG...............................................................................................................................25110.091000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATATTCTTTATCAGCATCAAT..........................................................................................................................................22110.091000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTATATG.....................................................................................................................................................................................................................................26190.051000000000100000000000000000000000000000000000000000000000000000
............................................................................CGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----.............................................................................................................................................................................................................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
.....................................................................TCTGCTTCGCAT-----------T----------------------CT---A---------A-TAGC......................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................ATAAGGGTATATTGTATATG.....................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................AGCAT-GG----T-------AATT--GCATCTTTT......................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................CTGCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----.............................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTA----TGTATGA...............................................................................25200.051000000000000000000000000000000000000001000000000000000000000000
............................................................................CGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCATC..........................................................................................................................................................................................................................................................................................28200.051000010000000000000000000000000000000000000000000000000000000000
.......................................................................TGCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AA...................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCTGTC......................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTATAT......................................................................................................................................................................................................................................25200.051000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TATGTGCAAAATCCAAATGTATG----------T.......................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................AAAATGGGT-ATAAGGGTATATTG...........................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTTTAGATGTA--GTTGCTCC............24200.051000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTC..........................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTA----TGTATG................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACTTGAAATTTTAGATGTA--GT..................25200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................GCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AA...................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCTG........................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................CAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCATCT.........................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TCCGTA----TGTATGAGCTCAAGGATCTC..................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................TCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--...............................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGATGTA--GTTGCTCCTC..........20200.051000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAGCTCAAGGATCTCAG................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTA----TGTATGAGCTC...........................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................TGAACCCATTAAAAATGGGT-ATAAGGG..................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTATA.......................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TATCAGCATCAATAGCC-GAGTCGAT.............................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................TCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GC.............................................................................................................................................................................................................................................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTGAAATTTTAGATGTA--GTT.................24200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................TCCAAATGTATG----------TAACAGGCAGAAGGAA-----------C............................................................................................................................................................................29200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................AT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------AATT--GCATC..........................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAATTTTAGATGTA--GTTGCTCC............28200.051000000000000000000000000000000000010000000000000000000000000000
............CACACATTCAT-----------------------------------------GCGCGTCTGC....................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
......................................................................CTGCTTCGCAT-----------T----------------------CT---A---------A-TAGCAT-GG----T-------A....................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTCCGT...................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
TATATGAAGATAGAACCATTTGG-----------------------------------------CTGCTTCAGTATT----------------------------------------TCTA---------T-TCCTTA-GA----A-------GCAT--GTTACATTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTT--------AAAAGTATG----------TAACAGGCAGAAGGAATCATCTCAGACCCCATAAAGTATATATATTCTTGATCAGGGCGACGAGCT-AAGTCGATTTGGCCCTGTCCGTCTGTCTGTCCGTCCGTCCGTCCGTATGTATGAACGCGTCGATTTCAGAAGATATA-----AGAGCTAGAGACTTGAAA-----------TTTTTTTTCCTAGGTCC-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................AGATATA-----AGAGCTAGAGACTT.....................................21200.75151500000
..TATGAAGATAGAACCATTTGG-----------------------------------------CTGC..........................................................................................................................................................................................................................................................................................................................................................................................25180.112100010
........GATAGAACCATTTGG-----------------------------------------CTGCTTC.......................................................................................................................................................................................................................................................................................................................................................................................22180.061100000
........GATAGAACCATTTGG-----------------------------------------CTGCTTCA......................................................................................................................................................................................................................................................................................................................................................................................23180.061100000
.........ATAGAACCATTTGG-----------------------------------------CTGCTTC.......................................................................................................................................................................................................................................................................................................................................................................................21180.061100000
.....GAAGATAGAACCATTTGG-----------------------------------------CTGC..........................................................................................................................................................................................................................................................................................................................................................................................22180.061000010
...........AGAACCATTTGG-----------------------------------------CTGCTTCAGTATT----------------------------------------.........................................................................................................................................................................................................................................................................................................................................25180.061100000
....TGAAGATAGAACCATTTGG-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................19180.061100000
........GATAGAACCATTTGG-----------------------------------------CTGCTTCAGTAT..................................................................................................................................................................................................................................................................................................................................................................................27180.061100000
........GATAGAACCATTTGG-----------------------------------------CTGCTTCAGTAA..................................................................................................................................................................................................................................................................................................................................................................................27180.061100000
..........TAGAACCATTTGG-----------------------------------------CTGCTTCAGTATT----------------------------------------.........................................................................................................................................................................................................................................................................................................................................26180.061000010
....TGAAGATAGAACCATTTGG-----------------------------------------CTGC..........................................................................................................................................................................................................................................................................................................................................................................................23180.061000010
.ATATGAAGATAGAACCATTTGG-----------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................23180.061000010
..................TTTGG-----------------------------------------CTGCTTCAGTATT----------------------------------------A........................................................................................................................................................................................................................................................................................................................................19190.051100000
.........................................................................................................................................................................................TGAAAATGGGAAATCAGGGT.................................................................................................................................................................................................................................................20200.051100000
................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTCTGTCTGTCCG....................................................................................................26200.051100000
.............................................................................................................................................................................................................ATAATGGTTTTGTT--------AAAAGT.....................................................................................................................................................................................................................20200.051000100
..........................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTATGTATGAACGC...........................................................................25200.051000001
droGri2
GAA-----GCTTAACAGACTGAT-------------------------------------------------------------------------------------------------------------------------------------C--GATTATTTTCTATGCCATGAACTCATTAAAAATGGGTAATAAGGGCATAATGGTTTTTTG--C-----AAATGTATG----------TAACAGGCAGAAGGAAACATCTCCAACCACCTAAAGTTTATATAATC--------GGACAACAGCC-GAGTCGATATAGCTATGTCCGTCTATCCGTCCGCCCGTCCATC----TGTATGAACACGAAGATCTCAGAGACGATA-----AGAC--------ATCAAATTTGAAA----TATA-GGTCCTCGTATA--CGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:23 PM