dya_389

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGCTAAAACCGACCCAGAGCTAGCTGCCAAAAGAGCCAACGACATTCAGGTATTTTTTTCAAAAATTAATTGAAGTTTAGTTTGCTCTCACGAGTGGTATACTAAATTCGTTGAAAAGTATGTAACAGGCAGATGGAAGTGTTTCCGAAAACAGAAAGTACATCTATTTTTTATCAGAATCAGAAGTCGATTCGATCTGGACCTGTCCTGGAAAAAAAATGTAAAAAAAATTTTGGGCGTGCCAGTTTTT ************************************************.(((.((((((((........((((.((((((((((((....))))))...)))))))))))))))))).))).......(((((.(((.((((((.((....((((((((....)))))))).......)).)))).)).))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	M056 embryo	V120 male body	V046 embryo	GSM1528802 follicle cells
.........................TGCCAAAAGAGCCAACGACATTCAGGGT......................................................................................................................................................................................................	28	2	1	1.00	1	1	0	0	0	0
.............................AAAAGAGCAAACGACATTCAGG........................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0
................AGAGCTAGCTGCCAAAAG.........................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
....TAAAACCGACCCAGAGCTAGC..................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.............................AAAAGAGCCAACGACATT............................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
..........................................................................................................................GTAACAGGCAGATGGAAGTGT............................................................................................................	21	0	2	0.50	1	0	0	0	1	0
....................................................................................................................AAGTATGTAACAGGCAGATGGAAGTGT............................................................................................................	27	0	2	0.50	1	0	0	1	0	0
...........................................................................................................................TAACAGGCAGATGGAAGTGTTTCC........................................................................................................	24	0	2	0.50	1	0	0	1	0	0
.....................................................................................................................................................................................................CTGGACCCGTCTTGAAAAAAA.................................	21	3	3	0.33	1	0	1	0	0	0
....................................................................................................................AAGTATGTAACAGGCAGATGGAA................................................................................................................	23	0	8	0.13	1	0	0	1	0	0
...........................................................................................................TTCGTTGAAAAGTATGTCACAGGCAGAT....................................................................................................................	28	1	12	0.08	1	0	0	0	0	1
...................................................................................................................AAAGTATGTAACAGGCAGATGGAAGGGT............................................................................................................	28	1	20	0.05	1	0	1	0	0	0
.............................................................................................................................ACGGGCTGATGGGAGTGTT...........................................................................................................	19	3	20	0.05	1	0	0	1	0	0

AACGATTTTGGCTGGGTCTCGATCGACGGTTTTCTCGGTTGCTGTAAGTCCATAAAAAAAGTTTTTAATTAACTTCAAATCAAACGAGAGTGCTCACCATATGATTTAAGCAACTTTTCATACATTGTCCGTCTACCTTCACAAAGGCTTTTGTCTTTCATGTAGATAAAAAATAGTCTTAGTCTTCAGCTAAGCTAGACCTGGACAGGACCTTTTTTTTACATTTTTTTTAAAACCCGCACGGTCAAAAA ************************************************.(((.((((((((........((((.((((((((((((....))))))...)))))))))))))))))).))).......(((((.(((.((((((.((....((((((((....)))))))).......)).)))).)).))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body
.........................................................................................................TTAAGCAACTTTTCATACATTGTCC.........................................................................................................................	25	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droYak3	2L:20324386-20324636 -	dya_389	TTGCTAAAA--C---------CGACC-CAGAGCTAGCTGC----C-----------AAAAGA----------GCCAACG-------ACAT-TCAGGT--ATTTTTTTCAA--------------------------------AAAT-TAATTGAA---------------------------------------------------GTTTAGT--------TTGCTCTC----------AC-----GAGTGGTATACTAAATTCGTTGA-------AAAGTATGTAACAGGCAGATGGAAGTGTTTCCGAAAACAGAAAGTACA----TCTATTTTTTATCAGAATCAGAAGTCGATTCGATCTGGACCTGTCCTGG------------------------AAAAAAAATGTAAAAAAAATTTTGGGCGTGCCAGTTTTT
droEre2	scaffold_4845:2723030-2723247 -		ATTTTGAAG--A---------CAATG-AAGTCCAAGTTGA----C-----------AAAAGA----------GAAAAC-------GA---T--------ATTGCACGCAATCGATTA---------CTAGTT-------------------------------------A---TAC---TCG--------------------------TAATT--------ATACCCGTTACTCC---TAG-AGTAAAAGGGTATACTAGAATCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTCTCCGATCATACAAAGTATA----TATATTCTTGAGCAGAATCAATAGCCGAGTCGATCTGGCCATGTCC------------------------------------------------------------------
droSec2	scaffold_20:805818-806001 +		ATTCAGGAA-------------------------------------------------------------------------------------------------------------------T----------------------------------------TTTTAAACA----------TTATAT-----------------ATTTTT--------ATATTTTT----------TTAACATAAACATTATACTAGATTCGTTGA-------AAAGCATGTAACGGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATTAGGATTAATAGACGAACG------------------------TCGAAATCTCCGG-AACTAAAAAAGC--TAGAGAAGGT------------------T
droSim2	node_101820:3419-3609 +		CTAAA---A--C---------CGCCC-AAAA-------------------------------------------------------------------T---------------------------------TGCCATGCC-------------------CACATTTTT------------------------AACAATT-T-TTGGATATTT--------TCACCGGTTACGCG---TTT-AGTAAAAGGGTTTTCCATATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATA----TATATTCATGATCAGGATCAATAGCCGACTCGATCCAGCCATGTCC------------------------------------------------------------------
dm3	chr2L:21580240-21580438 +		ATTTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTTAAAAATC-T-TTCGATTTAT--------TTACCAGTTACTCA------------TAGGGTATACTAGATTCGTTGA-------AAAGTATGTTACAGGCAGAAGGAAGCGTTTCCGACCCTATATAGTATT----TATATTCTTGATCAGGATCAATAGCCAAGTCGATCTGGCCATGTCCGTATGAACATCAAGATCTGAGG-TACTA------------------------------TAAAAGCT
droEug1	scf7180000409568:164777-164976 -		GCCA--AAA--C---------AAGTCCTAGAGCT-------AAGT-----------CAAAGA----------GTCGGGG-------GT----CATAC--A--------------------------------TTTTTTCAAAAAAG-GCCA-AACAACAA-----------------------------------------A-TTG------------------GCTGTTACTCG---------------TATATACTAGATTCTTTGA-------AAAGTATGTAACAAATAGAAGGAAGCGTTTCAGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAGCAAAGTCAATTGAGCCATGTCC------------------------------------------------------------------
droBia1	scf7180000301518:852875-853074 +		GACCTAGAT-----------------------TTAGC-------------------TTAAGC----------TTCTGAG-------ATAT-TTGCCT--ATTGTTGTTAAACATTTA---------CTATTT-------------------------------------T---GTA---CTA--------------------------TCATT--------ATACCCTT----------GT-----AGAGGGTATAACAATTTCAGTCA-------AAAGTTTGCAACGCAGTGAAGGAGACGTTTTCGACCCCATAAAGTATA----TATATTCTTGATCAGAATCACTAGGCGAGTCGATCTAGTCATGTCC------------------------------------------------------------------
droTak1	scf7180000415815:245243-245442 +		AACCCAGCG--T---AGAAGAAAAT-------------GT----T--------AAAA---AA----------ATCAACAAA----GA---T--------A------------------------TAATTTTT-------------------------------------T---TCC---TAA--------------------------TAATT--------ATACCCGTTACTCG---TAG-AGTAAAAGGGTATACTAGATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATA----TATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------
droEle1	scf7180000491211:136227-136411 +		AAAA-------C---------TGAAC-CGAA---AGCTGC----CACAAGTTTAAAT------------------------------------------A-----------------------------------------------------------------TTTAA-AC-----------------------AAACTAATTAGCTTATT--------ATACCCTT----------GC-----AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCC------------------------------------------------------------------
droRho1	scf7180000775999:55062-55281 -		TTGTTAAAATTCTAA--AAC-T-----ATTTG-------TTAGGT-----------AAAAGA----------GCAAAG--------G---TCTAAG-AC---------------------------------TTCTTTTAA-------------------TACATTTTA----A----------T----------------A-TTGCATTTTT--------ATACCCGTTACTCG---TAG-AGTAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCC------------------------------------------------------------------
droFic1	scf7180000453948:2697370-2697480 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATACTGCATTTGTTGA-------AAAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATT----TATATTTTTGATCAGAATCATAGGACGACTCGATCTATGTCTGT--------------------------------------------------------------------
droKik1	scf7180000301646:3854-4066 +		TTCCCGAAA--A---------AAACG-CTAGATTAGCAA----AC-----------AAAAAA----------CCCAAAA-------ACCC--CAAA-AA---------------------------------TCCTTTTAAAAAAGCTAAAAAAA------------------A----------C----------------C-CTACATTTTT--------ATACCCTT----------G-------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAACCATGTCC------------------------------------------------------------------
droAna3	scaffold_13089:572260-572468 +		GGGAT---T--T---------TTTCC-AA-----------------------------------------------------------------------------------------------------------------AATT-TTTA-T------------------ACA------------AGGT-----------A-CT----CTTA--------GTTCT-------------------CTCTTAGTATACTGTAGTCGTGTG-------AATGTATGTAACAGGGAAAAGGAATCATATCCAACTCCATAAAGTATAGACATTTATTTCTGATAAGCATTAT--ATCGAGTCGATATAGCCGTAACCTTCGC--------------CTACCCCTACAAAAAT--TGA---ATATTTTTCGAGCGCCAGTATTT
droBip1	scf7180000396547:1263601-1263799 +		TCGCAAAAT--C---------AAACT-CACAG-------TCAAAC-----------GAAAA-----------ACTAACA-----------------------------------------------------------------------------ACAAACGAGCTTTG---A-TTCCGAA--TTATTG-----------------CTTTTT--------ATACCCTT----------GC-----AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCC------------------------------------------------------------------
dp5	2:23834894-23835088 +		TAGA----A--C---------TGATA-CAGATATG----T----T-----------GAAAG-C---------------A-----------------------------------------------------------------------------ACGAACGACT-----------------------------------T-TGACATATTT--------ATACCCGATACTCAAAAT-G-AGTATTGGGGTATATTAGATTTGTGCTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TATATTCTGGATCAGCATCAAAAGCCGAGTCGATTGAGCCATGTC-------------------------------------------------------------------
droPer2	scaffold_678:3888-4109 +		CTATTAAAACTT---------------------TGGATGT----C-----------GGATGA----------TTCAACGACGGCGGG---TTCAGG--------AT------------------A----------------------------------------TTTGA--------------AT-------CACAAACTA-TTGACTTTTT--------ATACCCGATACTCAAAAT-G-AGTATTGGGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTC-------------------------------------------------------------------
droWil2	scf2_1100000004747:12979-13189 -		ATGCA---A--T---------TGACC-AAGAGATAGT------------------------------------ACCAGAACGA----------------------CCCGATCGAGTATCTAGTATAATT----------------------------------------ATACTAA---TTATAATTATA-----------------CTAATT--------ATACCCAT----------AG-GGTGAAATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATA----TATATTCTTGATAAGGATCAAAAACCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------
droVir3	scaffold_12855:9527268-9527489 -		TTTCAAAGC--C---------CGGCT-CAGT--AGG--------T-----------GCACG-CAACAAAAAAA------------CA---T--------ACTACACTT---------------------------------------------------------TCTT----A----------TT-------CACATG--------TTTTTTATATCCTG-AACCCATTAAAAA---TGG-TTTAAAAGGGTATATTGTATTTGTGCAAAATGCAAATGTATATAACAGGCAGAAGGAAGCATCTCCAACACCATAAAGTATA----TATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------
droMoj3	scaffold_6498:998391-998589 -		CCAA--A-A--C--------------------------------C-----------AAATGA----------GCCAAC-----------------------CGAACCCAACCA-----------------------------------------------ACCATTTTT----A----------TTGTAT-----------------TTTTTTATACCCTG-AACCCATTTTCAA---TGG-GAAATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGTATA----TATATTCTTGATCAGGGTGACGAGCTGAGTTGATTTGGCCCTGTCC------------------------------------------------------------------
droGri2	scaffold_15074:3297384-3297565 -		CAAAGGAAA---------------TG--------------------------------------------------ATG-------G-------CGT--TTGGTG-------------------------------------------------------------------------------ATGATA-----------------CTTTTTATACCCTGAAACCCATTCAAAT---TGG-GTAAAAAGGGTATAATGGTTTTGTGCA-------AATTGATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATA----TATATTCTTGATCAAGGTCAATAGCCGAGCCGATATAGCCATGTCC------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

TTGCTAAAA--C---------CGACC-CAGAGCTAGCTGC----C-----------AAAAGA----------GCCAACG-------ACAT-TCAGGT--ATTTTTTTCAA--------------------------------AAAT-TAATTGAA---------------------------------------------------GTTTAGT--------TTGCTCTC----------AC-----GAGTGGTATACTAAATTCGTTGA-------AAAGTATGTAACAGGCAGATGGAAGTGTTTCCGAAAACAGAAAGTACA----TCTATTTTTTATCAGAATCAGAAGTCGATTCGATCTGGACCTGTCCTGG------------------------AAAAAAAATGTAAAAAAAATTTTGGGCGTGCCAGTTTTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................TGC----C-----------AAAAGA----------GCCAACG-------ACAT-TCAGGG--T....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................AGAGCTAGCTGC----C-----------AAAAG...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....TAAAA--C---------CGACC-CAGAGCTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................AAAAGA----------GCCAACG-------ACAT-T............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GTAACAGGCAGATGGAAGTGT........................................................................................................................................	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGATGGAAGTGT........................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................TAACAGGCAGATGGAAGTGTTTCC....................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGATGGAA............................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ATTTTGAAG--A---------CAATG-AAGTCCAAGTTGA----C-----------AAAAGA----------GAAAAC-------GA---T--------ATTGCACGCAATCGATTA---------CTAGTT-------------------------------------A---TAC---TCG--------------------------TAATT--------ATACCCGTTACTCC---TAG-AGTAAAAGGGTATACTAGAATCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTCTCCGATCATACAAAGTATA----TATATTCTTGAGCAGAATCAATAGCCGAGTCGATCTGGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................TCCGATCATACAAAGTATA----TATATTCT........................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACTCC---TAG-AGTAAAAGGGT...........................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	1	0	0

droSec2

ATTCAGGAA-------------------------------------------------------------------------------------------------------------------T----------------------------------------TTTTAAACA----------TTATAT-----------------ATTTTT--------ATATTTTT----------TTAACATAAACATTATACTAGATTCGTTGA-------AAAGCATGTAACGGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATTAGGATTAATAGACGAACG------------------------TCGAAATCTCCGG-AACTAAAAAAGC--TAGAGAAGGT------------------T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGCATGTAACGGGC....................................................................................................................................................	24	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATA.............................................................................................................................	25	20	0.05	1	1	0	0	0

droSim2

CTAAA---A--C---------CGCCC-AAAA-------------------------------------------------------------------T---------------------------------TGCCATGCC-------------------CACATTTTT------------------------AACAATT-T-TTGGATATTT--------TCACCGGTTACGCG---TTT-AGTAAAAGGGTTTTCCATATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATA----TATATTCATGATCAGGATCAATAGCCGACTCGATCCAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGTT.......................................................................................................................................	25	20	6.25	125	0	0	0	0	0	0	0	0	4	0	121	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TACGCG---TTT-AGTAAAAGGGTTTTCCATA...................................................................................................................................................................................	28	1	6.00	6	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0	0	0
.........................................................................................................................................TGCC-------------------CACATTTTT------------------------AACAATT-T-TTGGA........................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC....................................................................................................................................................	24	20	4.45	89	0	0	3	0	0	0	0	0	0	86	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCA...................................................................................................................................................	25	20	3.95	79	0	0	0	6	0	0	0	0	7	0	0	0	46	20	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCA............................................................................................	25	5	3.80	19	0	0	16	0	0	0	1	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	26	20	3.20	64	0	0	0	0	0	0	0	40	0	24	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAGA.................................................................................................................................................	27	20	3.10	62	0	0	0	0	0	0	0	0	61	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	24	20	2.10	42	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TATTCATGATCAGGATCAATAGCCGAC...................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCAATA.........................................................................................	28	2	2.00	4	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCAAT..........................................................................................	27	3	2.00	6	0	0	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG..............................................................................................................................................	18	20	2.00	40	0	0	0	0	0	0	0	0	0	0	40	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAA............................................................................................................................................	25	20	1.65	33	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAG...............................................................................................................................................	17	20	1.45	29	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGCAGA.................................................................................................................................................	26	20	1.35	27	0	0	0	0	0	0	4	16	7	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TATTCGTTGA-------AAAGTATGTAACAGGC....................................................................................................................................................	26	3	1.33	4	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGCCGACTCGATCCAGCCATGTC...................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATATTCATGATCAGGATCAATAGCC......................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........C---------CGCCC-AAAA-------------------------------------------------------------------T---------------------------------TGCCATGCC-------------------CACATTT.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TTCATGATCAGGATCAATAGCCGAC...................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TCATGATCAGGATCAATAGCCGACT..................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GCCGACTCGATCCAGCCATGTCC------------------------------------------------------------------	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TCCATATTCGTTGA-------AAAGTATGTAAC........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTT.......................................................................................................................................	16	20	0.95	19	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGG.....................................................................................................................................................	23	20	0.80	16	0	0	0	0	0	0	0	3	11	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCAA...........................................................................................	26	5	0.80	4	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	28	20	0.65	13	0	0	0	0	0	0	8	0	4	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGG..............................................................................................................................................	23	20	0.65	13	0	0	0	0	0	0	6	7	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGACTCGAT..............................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAG..................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	4	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATA----TATATTCATGATCAGGATCAA...........................................................................................	24	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................CGTTGA-------AAAGTATGTAACAGGCAGA.................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	4	0	0	4	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCGATCCAGCCATGTC...................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAATAGCCGACTCGATC.............................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATA----TATATTCATGATCAGGATCAAT..........................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGCAGAAGG..............................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TAAAGTATA----TATATTCATGATCAGG................................................................................................	25	15	0.27	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAC...................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGAC.................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGAAGGAAGCGTTTCCGACT................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGCAGAAGGAA............................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGT........................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	30	20	0.15	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TTCATGATCAGGATCAA...........................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TAAAGTATA----TATATTCATGATCAGGA...............................................................................................	26	15	0.13	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCAAC..........................................................................................	27	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC....................................................................................................................................................	23	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGGA.............................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAGAAG...............................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCATGATCAGGATCG............................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AATT-T-TTGGATATTT--------T..........................................................................................................................................................................................................................	16	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AAGTATA----TATATTCATGATCAGGA...............................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................A----TATATTCATGATCAGGAT..............................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TA----TATATTCATGATCAGGA...............................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTAACAGGC....................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACA.......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TATTCGTTGA-------AAAGTATGTAACAGGT....................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAAGCGTT.......................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAA............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGACTATATAAAGTATA----TATATT..........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGGCAGAAGG..............................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTCCGACTATATAAAGTATA----TATATT..........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCC....................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGA..................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................ATT-T-TTGGATATTT--------T..........................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................	31	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGA.............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGT........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT.......................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGGCAGA.................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTCCGACTATATAAAGTATA----TATA............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGCAGAAGGAA............................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTC.....................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCGT........................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCGTT.......................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGCAGAAGG..............................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

dm3

ATTTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTTAAAAATC-T-TTCGATTTAT--------TTACCAGTTACTCA------------TAGGGTATACTAGATTCGTTGA-------AAAGTATGTTACAGGCAGAAGGAAGCGTTTCCGACCCTATATAGTATT----TATATTCTTGATCAGGATCAATAGCCAAGTCGATCTGGCCATGTCCGTATGAACATCAAGATCTGAGG-TACTA------------------------------TAAAAGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................AAGTATGTTACAGGCAGAAGGAAGC..........................................................................................................................................	25	3	8.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	11	3	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CAAGTCGATCTGGCCATGTCC..................................................................	21	8	5.38	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0
.........................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTTACAGGCAGAAGGA.............................................................................................................................................	27	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCA.....................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCAAGTCGAT..............................................................................	24	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AAGTATGTTACAGGCAGAAGGAATT..........................................................................................................................................	25	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCAAGTCGATC.............................................................................	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AATAGCCAAGTCGATCTG...........................................................................	18	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCGTT.......................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGC.......................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GTTACAGGCAGAAGGAAA...........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GCCA--AAA--C---------AAGTCCTAGAGCT-------AAGT-----------CAAAGA----------GTCGGGG-------GT----CATAC--A--------------------------------TTTTTTCAAAAAAG-GCCA-AACAACAA-----------------------------------------A-TTG------------------GCTGTTACTCG---------------TATATACTAGATTCTTTGA-------AAAGTATGTAACAAATAGAAGGAAGCGTTTCAGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAGCAAAGTCAATTGAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GACCTAGAT-----------------------TTAGC-------------------TTAAGC----------TTCTGAG-------ATAT-TTGCCT--ATTGTTGTTAAACATTTA---------CTATTT-------------------------------------T---GTA---CTA--------------------------TCATT--------ATACCCTT----------GT-----AGAGGGTATAACAATTTCAGTCA-------AAAGTTTGCAACGCAGTGAAGGAGACGTTTTCGACCCCATAAAGTATA----TATATTCTTGATCAGAATCACTAGGCGAGTCGATCTAGTCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACCCAGCG--T---AGAAGAAAAT-------------GT----T--------AAAA---AA----------ATCAACAAA----GA---T--------A------------------------TAATTTTT-------------------------------------T---TCC---TAA--------------------------TAATT--------ATACCCGTTACTCG---TAG-AGTAAAAGGGTATACTAGATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATA----TATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAA-------C---------TGAAC-CGAA---AGCTGC----CACAAGTTTAAAT------------------------------------------A-----------------------------------------------------------------TTTAA-AC-----------------------AAACTAATTAGCTTATT--------ATACCCTT----------GC-----AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGTTAAAATTCTAA--AAC-T-----ATTTG-------TTAGGT-----------AAAAGA----------GCAAAG--------G---TCTAAG-AC---------------------------------TTCTTTTAA-------------------TACATTTTA----A----------T----------------A-TTGCATTTTT--------ATACCCGTTACTCG---TAG-AGTAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATACTGCATTTGTTGA-------AAAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATT----TATATTTTTGATCAGAATCATAGGACGACTCGATCTATGTCTGT--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTCCCGAAA--A---------AAACG-CTAGATTAGCAA----AC-----------AAAAAA----------CCCAAAA-------ACCC--CAAA-AA---------------------------------TCCTTTTAAAAAAGCTAAAAAAA------------------A----------C----------------C-CTACATTTTT--------ATACCCTT----------G-------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAACCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGGAT---T--T---------TTTCC-AA-----------------------------------------------------------------------------------------------------------------AATT-TTTA-T------------------ACA------------AGGT-----------A-CT----CTTA--------GTTCT-------------------CTCTTAGTATACTGTAGTCGTGTG-------AATGTATGTAACAGGGAAAAGGAATCATATCCAACTCCATAAAGTATAGACATTTATTTCTGATAAGCATTAT--ATCGAGTCGATATAGCCGTAACCTTCGC--------------CTACCCCTACAAAAAT--TGA---ATATTTTTCGAGCGCCAGTATTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCGCAAAAT--C---------AAACT-CACAG-------TCAAAC-----------GAAAA-----------ACTAACA-----------------------------------------------------------------------------ACAAACGAGCTTTG---A-TTCCGAA--TTATTG-----------------CTTTTT--------ATACCCTT----------GC-----AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TAGA----A--C---------TGATA-CAGATATG----T----T-----------GAAAG-C---------------A-----------------------------------------------------------------------------ACGAACGACT-----------------------------------T-TGACATATTT--------ATACCCGATACTCAAAAT-G-AGTATTGGGGTATATTAGATTTGTGCTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TATATTCTGGATCAGCATCAAAAGCCGAGTCGATTGAGCCATGTC-------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAA..........................................................................................................................	25	20	5.10	102	0	102	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTGCTGAAAGTGGATGTGTG............................................................................................................................................................	20	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA...........................................................................................................................	24	20	0.75	15	0	0	14	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................TCAAAAT-G-AGTATTGGGGTAT.........................................................................................................................................................................................	21	20	0.60	12	0	12	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TGTGCTGAAAGTGGATGTGTGTAACG.......................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TTTGTGCTGAAAGTGGATGTGTGTAACG.......................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................TTTGTGCTGAAAGTGGATGTG..............................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTGTGCTGAAAGTGGATGTGT.............................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTGTGCTGAAAGTGGATGTGTG............................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................TTGGGGTATATTAGATTTGTG.............................................................................................................................................................................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAACG.......................................................................................................................................................	21	20	0.40	8	0	0	0	0	0	0	5	3	0	0
..............................................................................................................................................................................................................................................T-G-AGTATTGGGGTATATTAG....................................................................................................................................................................................	20	20	0.40	8	0	0	0	0	0	0	0	8	0	0
.............................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAACGT......................................................................................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCC..............................................................................................................................	25	20	0.30	6	0	0	5	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAA.........................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	5	0	0
....................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCC...............................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAAC........................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	4	0	0	0
.....................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCAT............................................................................................................................	23	20	0.20	4	0	0	4	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAACGTC.....................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CAAAAT-G-AGTATTGGGGTAT.........................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAACGTCC....................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CGTTTCCGACCCCATAAAGTATA----................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTAACGTCCAGAAGGAATCGTT.......................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTGGATCAGC................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................GTGTAACGTCCAGAAGGAAT...........................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATA----TATATT..........................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAACG.......................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GGAATCGTTTCCGACCCCAT............................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACG.......................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTT--------ATACCCGATACTCAAAAT-G-......................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AAAAT-G-AGTATTGGGGTATA........................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCATCAAAAGCCGAGTCGATT.............................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGA..................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGT......................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCATAAAGG.......................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATA----TAT.............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGTCCAGA.................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................CAAAAT-G-AGTATTGGGGTATA........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................GTATTGGGGTATATTAGATTTG...............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGT........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAAC........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTC.....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................TACTCAAAAT-G-AGTATTGGGGTATATT......................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................T-G-AGTATTGGGGTATATTAGA...................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACC................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTATTAAAACTT---------------------TGGATGT----C-----------GGATGA----------TTCAACGACGGCGGG---TTCAGG--------AT------------------A----------------------------------------TTTGA--------------AT-------CACAAACTA-TTGACTTTTT--------ATACCCGATACTCAAAAT-G-AGTATTGGGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTC-------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTCG................................................................................	27	20	14.15	283	0	283	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATG................................................................................................................................................................	19	20	0.50	10	0	0	0	0	0	10
......................................................................................................................................................................................................................................ACTCAAAAT-G-AGTATTGGGGTATA........................................................................................................................................................................................	24	20	0.35	7	0	7	0	0	0	0
.................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTGG...................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	7
............................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAACG.......................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4
....TAAAACTT---------------------TGGATGT----C-----------GGATGA----------TT..............................................................................................................................................................................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	0	0	1
.....................................TGT----C-----------GGATGA----------TTCAACGACGGCGGG---TT............................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0
.....................................TGT----C-----------GGATGA----------TTCAACGACGGCGG..................................................................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0
.....................................TGT----C-----------GGATGA----------TTCAACGACGGCG...................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0
.....................................TGT----C-----------GGATGA----------TTCAACGACGG.....................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGT...............................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2
.....................................TGT----C-----------GGATGA----------TTCAACGACGGC....................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGC.........................................................................	20	20	0.10	2	0	0	0	2	0	0
.........................................................................TCAACGACGGCGGG---TTCAGG--------AT------------------............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCCTGT....................................................................	19	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTGGATGTG..............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................TCAACGACGGCGGG---TTCAGG--------AT------------------A----------------------------------------TTT................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGCCC.......................................................................	21	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGGAT.................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCC..............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................ATTAGATTTGTGGTGAAAG......................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..........................................................................CAACGACGGCGGG---TTCAGG--------AT------------------A----------------------------------------TT.................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droWil2

ATGCA---A--T---------TGACC-AAGAGATAGT------------------------------------ACCAGAACGA----------------------CCCGATCGAGTATCTAGTATAATT----------------------------------------ATACTAA---TTATAATTATA-----------------CTAATT--------ATACCCAT----------AG-GGTGAAATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATA----TATATTCTTGATAAGGATCAAAAACCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTC.....................................................................................................................................	25	20	1.20	24	0	0	0	24	0
..........................................................................................................................................................................................................................................................................................................................ACAAAGTATA----TATATTCTTGATAA..................................................................................................	24	3	0.33	1	0	0	0	1	0
............................................................................................................................................................................................................................................................TATATTAAAGTCGCCAA-------AATG................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
............................AGAGATAGT------------------------------------ACCAGAACGA----------------------CCCGA..........................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0
............................AGAGATAGT------------------------------------ACCAGAACGA----------------------CCCG...........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGG..............................................................................................................................................	21	20	0.05	1	0	0	1	0	0
.........................................................................ACCAGAACGA----------------------CCCGATCGAGTATCT................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAAAAACCGAGTCGATCTAGCCATG.....................................................................	25	20	0.05	1	0	1	0	0	0
............................AGAGATAGT------------------------------------ACCAGAACGA----------------------CCC............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0

droVir3

TTTCAAAGC--C---------CGGCT-CAGT--AGG--------T-----------GCACG-CAACAAAAAAA------------CA---T--------ACTACACTT---------------------------------------------------------TCTT----A----------TT-------CACATG--------TTTTTTATATCCTG-AACCCATTAAAAA---TGG-TTTAAAAGGGTATATTGTATTTGTGCAAAATGCAAATGTATATAACAGGCAGAAGGAAGCATCTCCAACACCATAAAGTATA----TATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG...................................................................................	25	20	0.55	11	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGCAAATGTATATAACAGGCAGAAG...............................................................................................................................................	25	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC.......................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGCAAATGTATATAACAGGCAGAAGGA.............................................................................................................................................	27	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTC...................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATAACAGGCAGAAGGAAGCATCTCC....................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................TGCAAATGTATATAACAGGCAGA.................................................................................................................................................	23	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAAATGTATATAACAGGCAG..................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATAACAGGCAGAAGGAAGCAT........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAATGTATATAACAGGCAGAAGG..............................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGCAAATGTATATAACAGGCA...................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GTATATTGTATTTGTGCAAAATGCA....................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCAT..............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TATAACAGGCAGAAGGAAGCATC.......................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAA--A-A--C--------------------------------C-----------AAATGA----------GCCAAC-----------------------CGAACCCAACCA-----------------------------------------------ACCATTTTT----A----------TTGTAT-----------------TTTTTTATACCCTG-AACCCATTTTCAA---TGG-GAAATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGTATA----TATATTCTTGATCAGGGTGACGAGCTGAGTTGATTTGGCCCTGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGGTGACG..........................................................................................	21	20	0.30	6	6	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACGAGCTGAGTTGATTTGG..........................................................................	20	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTCAA---TGG-GAAATCAGG.............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................ATGTAACAGGGAGAAGGAGGCGTGG......................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

CAAAGGAAA---------------TG--------------------------------------------------ATG-------G-------CGT--TTGGTG-------------------------------------------------------------------------------ATGATA-----------------CTTTTTATACCCTGAAACCCATTCAAAT---TGG-GTAAAAAGGGTATAATGGTTTTGTGCA-------AATTGATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATA----TATATTCTTGATCAAGGTCAATAGCCGAGCCGATATAGCCATGTCC------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_389

2L:20324436-20324586 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.8	-25.8	-25.5