ID:

dya_377

 Coordinate:

2L:19023810-19023960 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.8 -23.6

Flybase annnotation

exon [dyak_GLEANR_520:5]; CDS [Dyak\GE21442-cds]; intron [Dyak\GE21442-in]

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac-
DNAREP1_DMRCHelitron-
mature
  1. dya_377  2L:19023837-19023862 -
  2. 2R:7812969-7812994 -
  3. 3R:824194-824219 -
  4. 3R:4577315-4577340 -
  5. v2_chrUn_4089:11058-11083 -
  6. v2_chrUn_6568:9794-9819 -
  7. v2_chrUn_2734:31684-31709 -
  8. v2_chrUn_4989:238871-238896 -
  9. v2_chrUn_4989:289051-289076 -
  10. v2_chrUn_5709:26435-26460 -
  11. v2_chrUn_5710:5822-5847 -
  12. v2_chrUn_6813:408-433 -
  13. v2_chr2h_random_002:61838-61863 -
  14. v2_chr2h_random_002:65776-65801 -
  15. v2_chr2h_random_021:53021-53046 -
  16. v2_chr3L_random_166:4134-4159 -
  17. v2_chr3L_random_166:56195-56220 -
  18. v2_chrUn_001:599246-599271 -
  19. v2_chrUn_003:282976-283001 -
  20. v2_chrUn_523:5937-5962 -
star
  1. 3L:17601225-17601245 +
  2. 2L:18235129-18235149 +
  3. 2L:20855294-20855314 +
  4. X:20346676-20346696 +
  5. 3R:4579668-4579688 +
  6. 3R:6575535-6575555 +
  7. 3R:7524735-7524755 +
  8. 3R:7550265-7550285 +
  9. 3R:10044510-10044530 +
  10. v2_chrUn_2296:218-238 +
  11. v2_chrUn_4791:126-146 +
  12. v2_chr2L_random_028:342960-342980 +
  13. v2_chr2h_random_026:136160-136180 +
  14. v2_chr2h_random_026:141904-141924 +
  15. v2_chr3R_random_129:9696-9716 +
  16. v2_chrUn_002:452218-452238 +
  17. v2_chrUn_003:441891-441911 +
  18. v2_chrUn_418:1388-1408 +
  19. v2_chrUn_866:2316-2336 +
  20. v2_chrUn_866:3148-3168 +
  21. 3L:20367607-20367627 +
  22. 3L:21552206-21552226 +
  23. 2L:17984333-17984353 +
  24. 2R:179791-179811 +
  25. 2R:3444253-3444273 +
  26. 3R:458249-458269 +
  27. 3R:13645551-13645571 +
  28. v2_chrUn_1092:2821-2841 +
  29. v2_chrUn_1886:1817-1837 +
  30. v2_chrUn_4354:250-270 +
  31. v2_chrUn_2749:806-826 +
  32. v2_chrUn_5517:11454-11474 +
  33. v2_chrUn_5740:739-759 +
  34. v2_chrUn_6126:611-631 +
  35. v2_chr2L_random_001:43426-43446 +
  36. v2_chr2L_random_028:402468-402488 +
  37. v2_chr3h_random_002:641728-641748 +
  38. v2_chr3h_random_002:829480-829500 +
  39. v2_chrX_random_049:141633-141653 +
  40. v2_chrUn_258:14040-14060 +
  41. 3L:24145558-24145578 -
  42. 2L:16387004-16387024 -
  43. 2L:16938277-16938297 -
  44. dya_377  2L:19023927-19023947 -
  45. 2L:19229357-19229377 -
  46. 2R:656645-656665 -
  47. X:4752794-4752814 -
  48. v2_chrUn_4369:918-938 -
  49. v2_chrUn_2308:1807-1827 -
  50. v2_chrUn_2946:872-892 -
  51. v2_chrUn_5405:193938-193958 -
  52. v2_chrUn_6825:642-662 -
  53. chr2h:469666-469686 -
  54. v2_chr2L_random_028:105200-105220 -
  55. v2_chr2L_random_028:106575-106595 -
  56. v2_chr2h_random_021:66722-66742 -
  57. v2_chr3L_random_164:9432-9452 -
  58. v2_chr3R_random_170:364736-364756 -
  59. v2_chr3h_random_002:359899-359919 -
  60. v2_chrUh_007:44577-44597 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTAACGCCCACAAACTGCCCAAAGCTGCCACGCCCACACTTTTGAAAAATGTTCTGAAATTTTTTCATTTTTGTATTGGTCTTGTAAATTTCTATCTACTGTCAGAGTTAAAGACTGTCCTTTGCACTTCCAATAGATGAGTAACGGGTATCAGATGGTCGGGGAACTCGACTATAGCGTTTTCTCTTGTTTTTGTTATAGTAAAGCGTCACTCAACAACTGAGGATCCAACTGACATTTTACCAGATAAA
***************************************************************............((((((((((....(((.(((((.((...(((((((((......))))).)))).)).))))))))..))))).))))).((((((((...))))))))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V120
male body		 M026
head
 V058
head
..............................................................................................................................................AACAGGTATCAGATGGTCGGG........................................................................................ 21 1 20 0.15 3 0 0 3 0 0
.TAACGCCCACAAACTGCCCAAAGCTGCCA............................................................................................................................................................................................................................. 29 0 9 0.11 1 1 0 0 0 0
....................................................................................................................................................TATCAGATGGTCGGGGAACTCGACTA............................................................................. 26 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................ATCGGATGGTCGGGGAGCTCGA................................................................................ 22 2 20 0.05 1 0 1 0 0 0
..................................................................................................................................................GGTGTCAGATGGTCGGGGAAC.................................................................................... 21 1 20 0.05 1 1 0 0 0 0
......................................................TGAAATTTTTTCCTTTTTGTATTGGTCT......................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
...............TGCCCAAAGCTGCCACGCCCACACC................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................................GACAGGTATCGGATGGTCGGG........................................................................................ 21 3 20 0.05 1 1 0 0 0 0
...............................................................TTCATTTTTGTATTGGTCTTG....................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................GTCGGATGGTCGGGGGACTCGA................................................................................ 22 3 20 0.05 1 0 0 0 1 0
.............................................................................................................................................TAACGGGTATCAGATGGTCGGGGAAC.................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................GTAGCGGGTATCAGATGGT............................................................................................ 19 1 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................CTCGACTATAGCGTTTTCTCTTG.............................................................. 23 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................GCGGGTATCAGATGGTCGGG........................................................................................ 20 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................CTCGACTATAGCGTTTTCTCTTGTG............................................................ 25 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................ATCAGATGGTCGGGGAACTCGACT.............................................................................. 24 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GATTGCGGGTGTTTGACGGGTTTCGACGGTGCGGGTGTGAAAACTTTTTACAAGACTTTAAAAAAGTAAAAACATAACCAGAACATTTAAAGATAGATGACAGTCTCAATTTCTGACAGGAAACGTGAAGGTTATCTACTCATTGCCCATAGTCTACCAGCCCCTTGAGCTGATATCGCAAAAGAGAACAAAAACAATATCATTTCGCAGTGAGTTGTTGACTCCTAGGTTGACTGTAAAATGGTCTATTT
*****************************************************************************............((((((((((....(((.(((((.((...(((((((((......))))).)))).)).))))))))..))))).))))).((((((((...))))))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V058
head
 M056
embryo
 GSM1528802
follicle cells
.....................................................................................................AGTCTAAATTTCTCACAGGAT................................................................................................................................. 21 3 1 1.00 1 0 1 0 0
..............................................................................................................................................................................................................................TCCTAGTTTGACAGTAAAAT......... 20 2 1 1.00 1 1 0 0 0
.......................................................................................................................................................GTCTACCAGCCCCTTGAGCTGATAT........................................................................... 25 0 20 0.55 11 11 0 0 0
..............................................................................................................................................................................................................................TCCTAGTTTGACAGTAGAAT......... 20 3 5 0.40 2 2 0 0 0
.........................................................................................................................................................CTACCAGCCCCTTGAGCTGATAT........................................................................... 23 0 20 0.30 6 0 0 6 0
........................................................................................................................................................TCTACCAGCCCCTTGAGCTGATAT........................................................................... 24 0 20 0.25 5 5 0 0 0
.....................TTCGACGGTGCGGGTGTGAAAACTTT............................................................................................................................................................................................................ 26 0 20 0.15 3 3 0 0 0
.........................................................................................................................................................CTACCAGCCCCTGGAGCTGATATCGC........................................................................ 26 1 20 0.15 3 0 0 0 3
......................................................................................................................................................AGTCTACCAGCCCCTTGAGCTGATA............................................................................ 25 0 20 0.10 2 2 0 0 0
..................................................................................................................................................CCATAGTCTACCAGCCCCTTGAGCTGAT............................................................................. 28 0 20 0.10 2 0 0 2 0
.........................................................................................................................................................CTACCAGCCCCTTGAGCTGATATCGC........................................................................ 26 0 20 0.10 2 0 0 2 0
....................TTTCGACGGTGCGGGTGTGAAAACTTT............................................................................................................................................................................................................ 27 0 20 0.10 2 0 0 2 0
....................................................................................................................................................ATAGTCTACCAGCCCCTTGAGCTGATAT........................................................................... 28 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................................................................TCCTAGTTTGATAGTAAAAT......... 20 3 15 0.07 1 1 0 0 0
....................................................................................................................................................................................................................AGTTGGGGACTGCTAGGTT.................... 19 3 19 0.05 1 0 1 0 0
.............................................................................CCAGAACATTTAAAGATAGA.......................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0
...TGCGGGTGTTTGACGGGTTTCGAT................................................................................................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0
....................TTTCGACGGTGCGGGTGTGAAAACTTTTT.......................................................................................................................................................................................................... 29 0 20 0.05 1 0 0 1 0
............................................................................................................................................................CCAGCCCCTTGAGCTGATATCGC........................................................................ 23 0 20 0.05 1 1 0 0 0
...................GTTTCGACGGTGCGGGTG...................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................CTCCCAGCCCCTTGAGCTGATACCGC........................................................................ 26 2 20 0.05 1 0 0 0 1
.....................................................................................................................................................TAGTCTACCAGCCCCTTGAGCTGATATC.......................................................................... 28 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................CTACCAGCCCATTGAGCTGATATCGC........................................................................ 26 1 20 0.05 1 0 0 0 1
.......................................................................................................................................................GTCTACCAGCCCCTTGAGCTGATA............................................................................ 24 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:19023760-19024010 - dya_377 CTAACGCCCA---------------------------------------------CAAACTGCCCA-AAGC--------------------------T-------GCCACGCCCA--------------CAC-----TTTTGAAAAA---TG---------------------------------------------------------------TTCTG-AAA-T----------------------TTT-------------------------------TTCATTTTTGT-----ATTGGTCTTGTAA-----------------------------AT-------TTCT---ATCTACTGTCAGAGTT-----------------------------------------------------------------------------------------------------------------------------------AAAGACTGTCCT----------------------------------T--------TGCACTTCCAATA-GATGAGTAACGGGTATCAGATGGTCGGGGA----ACTCGACTATAGCGT-TTTCT-CTTGTTTTTG-TTAT-AGTAAAGCGT-------CA----------------------CTC------------AACAACTGAGGATCCAACTGACATT----TTACC-AGATAAA
droEre2 scaffold_4770:11287324-11287564 + CTAACGCCCA---------------------------------------------CAAATCGCACA-AAAC--------------------------T-------CTCACACGCA--------------CAC-----TTTTAAAAAA---TT---------------------------------------------------------------GTT-AAGGT-G----------------------TTT-------------------------------TTTAT--------TGTATTACT------------------------------------------------------------------------------------------------------------------------TT------------------------------------------TTCCCCAATTTCTACCGGTATTCCAA-AAAATGTTTAAATTTCTCGT----------------------------------T--------TGCACTTCCACAA-GCTGAGTAACGAGTATCTTATAGTCGGGGA----ACTCGACTATAGCAT-TCTCT-CTTGTTTTTA-TTAT-AA-------------------AAATTATT------------C------------TTAATAACTTGGTATTTTTCTG----------------CAT-TT
droSec2 scaffold_26:406755-406996 + GTAACGTCTA---------------------------------------------CGAACCGCCTAAAAGC--------------------------T-------GCCACGCCCA--------------CAC-----TTTTGCAAAA---TG---------------------------------------------------------------TTGTG-ATA-------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTCCCCAATAGCTATCGATATCCCAACAAAATTGTGAAACTTCTCGA----------------------------------T--------TGCATTTCCACTA-GATGAGTAACAGGTATCTGATAGTCGGGGA----ACTCGACTATACCAT-TATCC-TATGCTTAAA-TTAA------------------------------TTTT-----------ACTACAG-TAGG------TTTCCGTTAAATCCAA----TTTTGATC-AAATTAA
droSim2 2r:3243071-3243310 - CTAACGCCCT---------------------------------------------AAAGCCGCCCA-A-AC--------------------------G-------GTCACGCCCA--------------CAC-----TTTGGATCAA----G---------------------------------------------------------------TTTTAA-TT--------TTT-------------TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTTCCCAATATCTATCGATATCCCAGAAAAATTATGGAATTTCGCCT----------------------------------T--------CGCATTCACACTA-GCTGAGTAAAGGGTATCTGATAGTCGGGGA----ACTCGACTATAGCAT-TCTTT-CTTGTTTTTA-TAA----T----------------CAGCGCTTGA------------A------------GTAATA----------AAATGTACATT-TTTTTATG-ACATTAA
dm3 chrXHet:32344-32583 - CGAACACCCT---------------------------------------------AAAGCCGCCAA--ACC--------------------------G-------GCCACGCCCA--------------CGC-----TTTTGAACAT---TT---------------------------------------------------------------ATTTA-AT----------TT-------------TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTTTTGATTACCTATCGATATCCCAGAAAAATGATGAAATTTCGCGT----------------------------------T--------TGCATTCACACTA-GCTGAGTAACGGGTATCTGATAGTCGGGGA----ACTCGATTATAGCAT-TCTCT-CTTGTTTTGGAGTAT-AACAATGTTTTATATAAAA----------------------TTTGAC-------AGAAGA------------ACCGAAGT--------------TTTA
droEug1 scf7180000408984:141543-141804 + CTAACGCTCA---------------------------------------------CAAACCGTGCA-AAAC--------------------------T-------GTGGCATCCA--------------TAA-----TATTATAAT-----G---------------------------------------------------------------TATGT-CTTCGTTTGACCTTGTATAACATATTTTTGTCCATATCTTTAAAATTTAGCAAAGATTTTTCAAAACAAAACGCTTTGT---------CC-----------------------------AT-------TTCA---ACTAGC----------A-----------A----------------------------------------------------------AATT-----------------------------------------------------------------------------------------------------------------------------AATATTTTACAATTGTGTAATAGTCTCTGC----ACTCGACTATAGCGT-TTCTT-CTTGTTTTAA-TTTC------------------------------TGTT-----------GCTTCAAACA------ACTTAGTGACGTAATGAA----ATTGGACC---TTAAA
droBia1 scf7180000301324:8417-8655 + CTTACGCCCA---------------------------------------------CAAACGGTTTAAACGCTTAAATCTGTCTGCCGCCCACATAACA-------TCTACA--------------------------------CAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCGGTAGATGAAGCTCTAAAATATTGCTTTTCTGCTTATATA--------------------------------------------------------G--------------------------------------TTACATTATCCTT----------------------------------T--------TG--CTCCCTTAA-GCAAAGTAACGGGTATTTAATAGTCGAGGC----ACTCGACTATAGCGT-TTTTC-CTTGTTTTTA-TTTAAATT----------------CAACGGCCGA------------C------------GGAA------------------ACCTTTTATTAGTGGGAACAAG
droTak1 scf7180000410451:265302-265565 - ATCGCGCCCA---------------------------------------------CAATCGCC-CACATTTTAAAATGTG-----------------C-------CTGGCGCCCA--------------CAC-----CTTTAAAGAT---TT---------------------------------------------------------------CCGAG-AAG-T----------------------ATA-------------------------------AATGCAATTTTGTTGTGT---------AT-----------------------------AT-------TTTT---ACCTAC----------G-----------C----------------------------------------------------------AACCAAAATTGTATATATCC---------------------------------------------ATCTTCC----------------------------------T--------CGCACACTTTTTA-GCCGAGTGACGGGTATTAGATAGTTGGAACAATAGCCCGACTATAGCGT-TCTCT-CTTGTTTTAT-TTGG---C----------------AAGCGCT----AATGATTTATTC------------T-----ATTTA-----AAACTAATATC----TTATT-GAACAAA
droEle1 scf7180000491107:1752054-1752290 - TACAA---------------------------------------------------AAATTGTTCA-AATC--------------------------G-------GAC------------------------------------------------------------------------------------------------TATTTTAGAAGTTATAA-GC--------ATT-------------TTG---------------------------------------------------------TAAATTTTCCGGCAGATGGCGCCACCTAAAAC-------------CC-AACTATTTTCAGGGGG-----------------------------------------------------------------------------------------------------------------------------------AATATTTATTAT----------------------------------T--------TTTAAAATTGCTA-CTTAATTAACGGGTATCCAATAGTCGGGGC----CCTCGACTATAGCCT-TTATT-TTTTTTGTTA-TTAAAAAA----CAA-------CA----------------------TTTACC-------TTAAGA-----GCAGACACTTTATGCA-CTT---CT-AGCAAAA
droRho1 scf7180000780269:2378-2600 + TTAACGCCCA---------------------------------------------CAATAGCT-TA---TA--------------------------T-------ATGATTTTAA--------------AAA-----TTTAAATA-T---TT---------------------------------------------------------------CGGAA-AAGTA------------------------------------------------------------------T-----ATTCGTC----------------------------------------------------------------------------------------------------------------------------GAAAAGTTATGCGTGATCAAAGTT-TCTATCTCC---------------------------------------------TTCTCCC----------------------------------T--------CGCACTCCCATTA-CCTGAGTAACGGGTATCTGATAGTCGGGGC----ACCCGACTATAGCGT-TCTCT-CTTGTTAAAT-AT-G------------------------------TTTT-----------TATTCAAAAA------AT------TCCAATCGAGTTT-CTT---TA-AACTAAA
droFic1 scf7180000454108:89680-89886 + TTTACGCACA---------------------------------------------CAAGTCGCGAA-ACTT--------------------------T-------GTAATGACCA--------------GAG-----CTTCGGTGAAAAATG---------------------------------------------------------------TT---------------TGT-------------TTG---ATGATTTGAATACGCA-------------------------------------------------GCAAACGGCGTTGTTCAAAAT-------------TTT------------------------------------------------------------------------------------------------------ACACACTTACTTT----------------------------------------TACT----------------------------------T--------TGTT---ACTCTACCATAAGTAAC-ACTATCTGATAATCGCGGC----ACTCGACTATAGTTT-TTTTT-AGTGTTTTA--TTAAAACT----------------TAA------------------------------------------------------------------CC---TTCAC
droKik1 scf7180000301572:1330-1497 - CGGACGACTA---------------------------------------------TATCAT----A-TAGC--------------------------T-------GCCATAC--A--------------AAT-----GTTTGATAAA---TT---------------------------------------------------------------TTTAG-AAA-A----------------------ATA-------------------------------ATTATTACTTT-----GCTGTTTTTCAAC-----------------------------AT-------TTTT---GCATAATTTTTGAGAT------------------------------ATG------------------------------------------------------GCC------------------------------------------------ATTTT----------------------------------A--------TATTGTTCCAAAA-TTTTTGTAAAAATTTTTTGAAAATCGGA---------CGACTATATCAT-------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13417:2342280-2342499 - CAAGCTTCTA---------------------------------------------CTAACTGGGTAC--TA--------------------------A-------CCCACGCAGA-TCCAGTTTG----TGTTAAAATTTGGGAAAA---TGAAAGTTCTGTTTCTCTACTGGATACAAAAGTACAAAAGTATGCAACTGAGACTTTAATAGAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------AAGATTCTATAATT-------TTAAGGT----------TTATTAAAGTGCGACTGGACGA-GATGAGTACCGGGTATCATATAGTCGCGGA----ACTCCCCTATAACGC-TT----------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000392135:7511-7727 + CCCGCCCCCA---------------------------------------------AAACAG----A-AATC-------TGGT---------------T-------GTAGCGCCAG------TTCGTTTATGT-----TTTTGGAAAA---TG---------------------------------------------------------------TTGCC-AAA-C----------------------T--------------------------------------------------------------------------------------------------------TTT----------------------------------CGATAG---------------------------------------------------------------TTAATTATAGTTAACTATTATTATAGCAA-----------TTATAGTATAGTTAAA----------------------------------T--------TGTGGGTGAAAGA-GATGAGTACTGGGTATAATATAGTCGGGAA----ACTCGACTATAGTCGTTCTTT-TTTGTTTATAATTAA-AC------GA-------AA----------------------TGT-------------------------------------------------AATAA
dp5 Unknown_group_233:1138-1314 + TCCGCCCCCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------CAA-----TTTCAATAGA---AT---------------------------------------------------------------CAAGA-AAACGATTTCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCTCGCTCTGTCTCTCTCTAACACACAGGT---TTCATGTTCGGCTT----------------------------------T--------ACCTATTGCAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-ATA---AG-AGCTCGA
droPer2 scaffold_5969:1181-1288 - TCCGCCCCCA---------------------------------------------CAAAGGGCGAA-AATC--------------------------T-------GTGGCATCCA--------------CAA-----TTTTGACGAT----A---------------------------------------------------------------CGAGT-AAACATTTGTATTTATTTG-TATTTATTT---------------------------------------------------------GTAT-----------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------ATATTCCTAACGC----------------------------------------------------------------------------------------------------------------------GAC------------------------------------------------------------------------------------------------------------------------------AGT
droWil2 scf2_1100000004963:3367824-3368009 + TCCGCCCCCGC--AATTTAAAAAAAGC-----------GTTTATCTCAAAAACTATTCCA---------GC--------------------------TAGAGACAC------CATATTTGGTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-----ATTCGCTTAGTAA-----------------------------ATGCACACATTTT---GTATGCATACAAATTT------------------------------------------------------------------------------------TGACACGCCCTTTTCCGCCC------------------------------------CCG-----TAA-----TTTGAAAAACTTGA-----------------TTATAT---------------------------------------------------CCCGT-ATTTT-TATGTCTTTT-TTA---------------------------------------------------------------------------------------------------T
droVir3 scaffold_13047:17549329-17549510 + TCAAAGACTA---------------------------------------------TAAAAGCTTGATAAA-----------------------------------C------CAACTTTGGTATGTTGGTGT-----TCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGC--------------------------------------------------------------------------------------------------ATCTGGAC---TTCATATTGGGCTG-----TATTTTATGATTTAAAGAATTCAACATTTT--------AAAA--TTGACAG-AGGCAGTAGTAGGGATTTAGTAGTTGAGCA---TACTCGACTAAAGCGT-GCTTTACTTGTTTT----------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:5747415-5747626 + TTATCGATCAAAAACCTTATCGAAAGCTAATTATTTAGTTATATCTCCTACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAATGTAGACTTATATGTATTTTATATAATTTCGATTTCGAGAATTTCAGACT---------------------------------------------------------------------GAT----------------------------------T--------AGAATATCAGATT-AGAGGGTTCAGGGTATCTCCTAGTCGAGCA---GTCTCGACTAGACTCT-CCTTA-CTTGTTTTTT-TT-----------------------------------------------------------------------------------------------------
droGri2 scaffold_14624:1402285-1402452 - TTATAATTAA---------------------------------------------TAAACTGCAAA-A-GT--------------------------T-------ACCTTAAGAA--------------CAA----------ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGGAAAGAGATGAT--------------------------------------------------------------------------------------------------------------------------TTAAATTTCAGGCTTATATAATTCTTGTTTAAAAGAATAA-----------------GTATATTTTACA-ACTTATTTGAGGGTATCTGGTAGTCGAGCA---CTCTCGACTACAGCAT-TCTGG-CTTG--------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CTAACGCCCA---------------------------------------------CAAACTGCCCA-AAGC--------------------------T-------GCCACGCCCA--------------CAC-----TTTTGAAAAA---TG---------------------------------------------------------------TTCTG-AAA-T----------------------TTT-------------------------------TTCATTTTTGT-----ATTGGTCTTGTAA-----------------------------AT-------TTCT---ATCTACTGTCAGAGTT-----------------------------------------------------------------------------------------------------------------------------------AAAGACTGTCCT----------------------------------T--------TGCACTTCCAATA-GATGAGTAACGGGTATCAGATGGTCGGGGA----ACTCGACTATAGCGT-TTTCT-CTTGTTTTTG-TTAT-AGTAAAGCGT-------CA----------------------CTC------------AACAACTGAGGATCCAACTGACATT----TTACC-AGATAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.TAACGCCCA---------------------------------------------CAAACTGCCCA-AAGC--------------------------T-------GCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2990.11101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGATGGTCGGGGA----ACTCGACTA...............................................................................................................................26200.10202000000000
............................................................TGCCCA-AAGC--------------------------T-------GCCACGCCCA--------------CAC-----C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..........................................................................................................................................................................................................................................................................................TTCATTTTTGT-----ATTGGTCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGTATCAGATGGTCGGGGA----AC......................................................................................................................................26200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCGT-TTTCT-CTTG..............................................................................................................23200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCGT-TTTCT-CTTGTG............................................................................................................25200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGATGGTCGGGGA----ACTCGACT................................................................................................................................24200.05100000100000
droEre2
CTAACGCCCA---------------------------------------------CAAATCGCACA-AAAC--------------------------T-------CTCACACGCA--------------CAC-----TTTTAAAAAA---TT---------------------------------------------------------------GTT-AAGGT-G----------------------TTT-------------------------------TTTAT--------TGTATTACT------------------------------------------------------------------------------------------------------------------------TT------------------------------------------TTCCCCAATTTCTACCGGTATTCCAA-AAAATGTTTAAATTTCTCGT----------------------------------T--------TGCACTTCCACAA-GCTGAGTAACGAGTATCTTATAGTCGGGGA----ACTCGACTATAGCAT-TCTCT-CTTGTTTTTA-TTAT-AA-------------------AAATTATT------------C------------TTAATAACTTGGTATTTTTCTG----------------CAT-TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT----------------------------------T--------TGCACTTCCACAA-GCTGAGTA..................................................................................................................................................................2540.2510100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATAGTCGGGGA----ACTC....................................................................................................................................2090.1110100000
droSec2
GTAACGTCTA---------------------------------------------CGAACCGCCTAAAAGC--------------------------T-------GCCACGCCCA--------------CAC-----TTTTGCAAAA---TG---------------------------------------------------------------TTGTG-ATA-------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTCCCCAATAGCTATCGATATCCCAACAAAATTGTGAAACTTCTCGA----------------------------------T--------TGCATTTCCACTA-GATGAGTAACAGGTATCTGATAGTCGGGGA----ACTCGACTATACCAT-TATCC-TATGCTTAAA-TTAA------------------------------TTTT-----------ACTACAG-TAGG------TTTCCGTTAAATCCAA----TTTTGATC-AAATTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGATAGTCGGGGA----ACTCGA..................................................................................................................................22200.0510100
droSim2
CTAACGCCCT---------------------------------------------AAAGCCGCCCA-A-AC--------------------------G-------GTCACGCCCA--------------CAC-----TTTGGATCAA----G---------------------------------------------------------------TTTTAA-TT--------TTT-------------TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTTCCCAATATCTATCGATATCCCAGAAAAATTATGGAATTTCGCCT----------------------------------T--------CGCATTCACACTA-GCTGAGTAAAGGGTATCTGATAGTCGGGGA----ACTCGACTATAGCAT-TCTTT-CTTGTTTTTA-TAA----T----------------CAGCGCTTGA------------A------------GTAATA----------AAATGTACATT-TTTTTATG-ACATTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAAAGGG.............................................................................................................................................................2587.63610000004601104000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAAAGG..............................................................................................................................................................2483.00240000001201011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACACTA-GCTGAGTAAAGGG.............................................................................................................................................................2382.001600000037510000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----T----------------CAGCGCTTGA------------A------------GTAATA----------AAATG.......................2612.00200000001001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACTCGA..................................................................................................................................23201.6533000000330000000000
......................................................................C--------------------------G-------GTCACGCCCA--------------CAC-----TTTGGATCAA----G---------------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTATGGAATT.........................................................................................................................................................................................................................................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGA------------A------------GTAATA----------AAATG.......................1811.00100000000001000000
..........................................................................................................................................................................................................................................T-------------TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTTCCCAATATCTA....................................................................................................................................................................................................................................................................2711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGTCGGG..............................................................................................................................................2671.00700000011401000000
......................................................................C--------------------------G-------GTCACGCCCA--------------CAC-----TTTGGATCAA----G---------------------------------------------------------------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..........................................................................................................TCACGCCCA--------------CAC-----TTTGGATCAA----G---------------------------------------------------------------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAATTTCGCCT----------------------------------T--------CGCATTC.................................................................................................................................................................................2311.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----T----------------CAGCGCTTGA------------A------------GTAATA----------AAATG.......................2511.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACACTA-GCTGAGTAAAGGGTA...........................................................................................................................................................2580.88700000003310000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAAAGGGTA...........................................................................................................................................................2780.63500000010400000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACACTA-GCTGAGTAAAGGGT............................................................................................................................................................2480.63500000011030000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGTCGG...............................................................................................................................................2580.63500000000000050000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAAAGGGA............................................................................................................................................................26100.50500000040100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAAAGGGT............................................................................................................................................................2680.50400000030100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGA----ACTCGACTATAGCAT-TCTTT-C.................................................................................................................2650.40200000000000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGTCGGGGA----........................................................................................................................................2850.40200000000200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTCACACTA-GCTGAGTAAAGGG.............................................................................................................................................................2680.38300000020100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACACTA-GCTGAGTAAAGGGA............................................................................................................................................................24100.30300000000210000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTA-GCTGAGTAAAGGGTATCTGATAG...................................................................................................................................................2870.29200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTGAGTAAAGGGTATCTGATAGT..................................................................................................................................................26120.25300000001101000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCT----------------------------------T--------CGCATTCACACTA-..........................................................................................................................................................................2140.25100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCACACTA-GCTGAGTAAAGGG.............................................................................................................................................................2480.25200000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACTCGACT................................................................................................................................25200.25500000050000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTA-GCTGAGTAAAGGGTATCTGA......................................................................................................................................................2590.22200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGTCGGGG.............................................................................................................................................2750.20100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGTC.................................................................................................................................................23150.20300000000001002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTGAGTAAAGGGTATCTGATAG...................................................................................................................................................25120.17200000000020000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACTA-GCTGAGTAAAGGGTATCTGA......................................................................................................................................................2860.17100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGA----AC......................................................................................................................................22200.15300000000120000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGA----ACTCGACTATAGCAT-TCTT....................................................................................................................2570.14100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------T--------CGCATTCACACTA-GCTGAGTAAAGGGTA...........................................................................................................................................................3080.13100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAAAGGGTATC.........................................................................................................................................................2680.13100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTCACACTA-GCTGAGTAAAG...............................................................................................................................................................2480.13100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCACACTA-GCTGAGTAAAGGGT............................................................................................................................................................2580.13100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTCACACTA-GCTGAGTAAAGG..............................................................................................................................................................2580.13100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CGCATTCACACTA-GCTGAGTAAAGG..............................................................................................................................................................2680.13100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAAAGGGT............................................................................................................................................................2390.11100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAAAGG..............................................................................................................................................................2190.11100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CGCATTCACACTA-GCTGAGTAAA................................................................................................................................................................24100.10100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGA----ACTCGACTATAGCAT-TC......................................................................................................................24200.10200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTGAGTAAAGGGTATCTGATAT...................................................................................................................................................25200.10200000002000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCACACTA-GCTGAGTAAAGGGA............................................................................................................................................................25100.10100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGGTATCTGATAGTCGGG..............................................................................................................................................22110.09100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTGAGTAAAGGGTATCTGATAGTC.................................................................................................................................................27110.09100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCAT-TCTTT-CTTGTT............................................................................................................24110.09100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTA-GCTGAGTAAAGGG.............................................................................................................................................................19120.08100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTGAGTAAAGGGTATCTGATA....................................................................................................................................................24130.08100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA----ACTCGACTATAGCAT-TCTTT-CTT...............................................................................................................26130.08100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----ACTCGACTATAGCAT-TCTTT-C.................................................................................................................23140.07100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAAAGGGTATCTGATAGTC.................................................................................................................................................24150.07100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCCAATATCTATCGATATCCC..........................................................................................................................................................................................................................................................26160.06100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAAGGGTATCTGATAGT..................................................................................................................................................22160.06100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCTGAGTAAAGGGTATCTGA......................................................................................................................................................21170.06100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCAATATCTATCGATATCCCA.........................................................................................................................................................................................................................................................25180.06100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGA----ACTC....................................................................................................................................24200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACTCGAC.................................................................................................................................24200.05100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGGGGA----ACTCGACTATAGC...........................................................................................................................26200.05100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTTCCCAATATCTATCGATA..............................................................................................................................................................................................................................................................25200.05100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGTCGGGGA----ACTCGA..................................................................................................................................21200.05110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATCGATATCCCA.........................................................................................................................................................................................................................................................15200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCGGGGA----ACTC....................................................................................................................................16200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAA...................................................................................................................................................................................................................................................16200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTA-GCTGAGTAAAGGG.............................................................................................................................................................18200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGA----ACTCGACTATAGCAT-TCT.....................................................................................................................25200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------T--------CGCATTCACACTA-GCTGAGT...................................................................................................................................................................22200.05100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTA-GCTGAGTAAAGGGTA...........................................................................................................................................................20200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGA----ACTCGACT................................................................................................................................28200.05100000001000000000
......................................................................C--------------------------G-------GTCACGCCCA--------------CAC-----TTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACTCG...................................................................................................................................22200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGA----ACTCGACTATAGCAT-TCA.....................................................................................................................25200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCCCAGAAAAATTA................................................................................................................................................................................................................................................19200.05100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAATATCTATCGATATCCC..........................................................................................................................................................................................................................................................23200.05100000000000010000
dm3
CGAACACCCT---------------------------------------------AAAGCCGCCAA--ACC--------------------------G-------GCCACGCCCA--------------CGC-----TTTTGAACAT---TT---------------------------------------------------------------ATTTA-AT----------TT-------------TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTTTATTTTTGATTACCTATCGATATCCCAGAAAAATGATGAAATTTCGCGT----------------------------------T--------TGCATTCACACTA-GCTGAGTAACGGGTATCTGATAGTCGGGGA----ACTCGATTATAGCAT-TCTCT-CTTGTTTTGGAGTAT-AACAATGTTTTATATAAAA----------------------TTTGAC-------AGAAGA------------ACCGAAGT--------------TTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAACGGGTA...........................................................................................................................................................242020.95419000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020700000000000000000000000000000000000000000005000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGG...............................................................................................................................................252017.25345000000000000000000000006000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000200003230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGG..............................................................................................................................................262011.752350000000000000000000000000000000000000000200000000000140000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000011017000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000007800000000000000001010000000000000000000000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAAAATGATGAAATTTCGCGT----------------------------------.................................................................................................................................................................................................261911.5321900000000000000000000010200000000000000002000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061115205132000000000000000000000000000000002221500001081200000360130000001001000010100000000000000000000000000000000000000000000000000000000000000000021100000000800000000000000000541100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAAAATGATGAAATTTCGCGT----------------------------------T--------........................................................................................................................................................................................27198.37159000000000000000000000000000000000000001020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000041110820000000000000000000000000000000001013000083120000006000200000100110000000000000000000000000000000000000000000000000000000000000000000000002200000000500100000000000002733000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTA-GCTGAGTAACGGGTATCTGA......................................................................................................................................................27203.0561000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000010000000000000000000504100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAACGGGTATC.........................................................................................................................................................26202.95590000000300000000000000000000000000000000300000003000000000000000000000000000000000001000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150012000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTA-GCTGAGTAACGGGTATCT........................................................................................................................................................27202.805600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000020000000000000000822000000010000000000000000000000000000000000000000000000000000000000000000000000002000000000300000000000000000096000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGTCGGGGA----ACTCGA..................................................................................................................................21202.50500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000113000000010000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000010010006000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTC.................................................................................................................................................23202.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000004000000000000000000300000000000000000000000000000000000000000016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000040000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGA----AC......................................................................................................................................22202.354700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000047000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGAAAAATGATGAAATTTCGCGT----------------------------------T--------........................................................................................................................................................................................28171.94330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000203000010000001000000060000000001010000000000000000000000000000000000000000000000000100000000000000000000000000200000000000000001411100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------T--------TGCATTCACACTA-GCTGAGTAACGGG.............................................................................................................................................................2851.8090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000100000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGATAGTCGGGGA----ACTCGAT.................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGATAGTCGGGGA----ACTCGATT................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGT----------------------------------T--------TGCATTCACACTA-GCT.......................................................................................................................................................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAGAAAAATGATGAAATTTCGCG....................................................................................................................................................................................................................................28150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCACACTA-GCTGAGTAACGG..............................................................................................................................................................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACTCGATT................................................................................................................................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGT----------------------------------T--------TGCATTCACACTA-GC........................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGTCGGGGA----ACTCG...................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGGGGA----AC......................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGATGAAATTTCGCGT----------------------------------T--------........................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTAACGGGTATCTGATA....................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCTGAGTAACGGGTATCTGAT.....................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGGGG.............................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGT..................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTA-GCTGAGTAACGGGT............................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGGTATCTGATAGTCG................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAG...................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATCCCAGAAAAATGATGAAATT.........................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACACTA-GCTGAGTAACGGG.............................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAAAATGATGAAATTTCGCT....................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCGATATCCCAGAAAAATGATGA.............................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGATA....................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGGGG.............................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGGTATCTGATAGTCGGGGA----A.......................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGATATCCCAGAAAAATGATGAAA...........................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTC.................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGATAGTCGGG..............................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTCG................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGATAGTCGGGGA----ACTCG...................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCACACTA-GCTGAGTAACGGGTA...........................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGA----ACT.....................................................................................................................................20200.1020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCGGGG.............................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTA-GCTGAGTAACGGGTATC.........................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATGATGAAATTTCGCG....................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAAAATGATGAAATTTCGC.....................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTCGGG..............................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAGAAAAATGATGAAATTTCG......................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGGGGA----ACTCGA..................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
droEug1
CTAACGCTCA---------------------------------------------CAAACCGTGCA-AAAC--------------------------T-------GTGGCATCCA--------------TAA-----TATTATAAT-----G---------------------------------------------------------------TATGT-CTTCGTTTGACCTTGTATAACATATTTTTGTCCATATCTTTAAAATTTAGCAAAGATTTTTCAAAACAAAACGCTTTGT---------CC-----------------------------AT-------TTCA---ACTAGC----------A-----------A----------------------------------------------------------AATT-----------------------------------------------------------------------------------------------------------------------------AATATTTTACAATTGTGTAATAGTCTCTGC----ACTCGACTATAGCGT-TTCTT-CTTGTTTTAA-TTTC------------------------------TGTT-----------GCTTCAAACA------ACTTAGTGACGTAATGAA----ATTGGACC---TTAAASizeHit CountTotal NormTotal
No Reads
droBia1
CTTACGCCCA---------------------------------------------CAAACGGTTTAAACGCTTAAATCTGTCTGCCGCCCACATAACA-------TCTACA--------------------------------CAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCGGTAGATGAAGCTCTAAAATATTGCTTTTCTGCTTATATA--------------------------------------------------------G--------------------------------------TTACATTATCCTT----------------------------------T--------TG--CTCCCTTAA-GCAAAGTAACGGGTATTTAATAGTCGAGGC----ACTCGACTATAGCGT-TTTTC-CTTGTTTTTA-TTTAAATT----------------CAACGGCCGA------------C------------GGAA------------------ACCTTTTATTAGTGGGAACAAGSizeHit CountTotal NormTotal
No Reads
droTak1
ATCGCGCCCA---------------------------------------------CAATCGCC-CACATTTTAAAATGTG-----------------C-------CTGGCGCCCA--------------CAC-----CTTTAAAGAT---TT---------------------------------------------------------------CCGAG-AAG-T----------------------ATA-------------------------------AATGCAATTTTGTTGTGT---------AT-----------------------------AT-------TTTT---ACCTAC----------G-----------C----------------------------------------------------------AACCAAAATTGTATATATCC---------------------------------------------ATCTTCC----------------------------------T--------CGCACACTTTTTA-GCCGAGTGACGGGTATTAGATAGTTGGAACAATAGCCCGACTATAGCGT-TCTCT-CTTGTTTTAT-TTGG---C----------------AAGCGCT----AATGATTTATTC------------T-----ATTTA-----AAACTAATATC----TTATT-GAACAAASizeHit CountTotal NormTotal
No Reads
droEle1
TACAA---------------------------------------------------AAATTGTTCA-AATC--------------------------G-------GAC------------------------------------------------------------------------------------------------TATTTTAGAAGTTATAA-GC--------ATT-------------TTG---------------------------------------------------------TAAATTTTCCGGCAGATGGCGCCACCTAAAAC-------------CC-AACTATTTTCAGGGGG-----------------------------------------------------------------------------------------------------------------------------------AATATTTATTAT----------------------------------T--------TTTAAAATTGCTA-CTTAATTAACGGGTATCCAATAGTCGGGGC----CCTCGACTATAGCCT-TTATT-TTTTTTGTTA-TTAAAAAA----CAA-------CA----------------------TTTACC-------TTAAGA-----GCAGACACTTTATGCA-CTT---CT-AGCAAAASizeHit CountTotal NormTotal
No Reads
droRho1
TTAACGCCCA---------------------------------------------CAATAGCT-TA---TA--------------------------T-------ATGATTTTAA--------------AAA-----TTTAAATA-T---TT---------------------------------------------------------------CGGAA-AAGTA------------------------------------------------------------------T-----ATTCGTC----------------------------------------------------------------------------------------------------------------------------GAAAAGTTATGCGTGATCAAAGTT-TCTATCTCC---------------------------------------------TTCTCCC----------------------------------T--------CGCACTCCCATTA-CCTGAGTAACGGGTATCTGATAGTCGGGGC----ACCCGACTATAGCGT-TCTCT-CTTGTTAAAT-AT-G------------------------------TTTT-----------TATTCAAAAA------AT------TCCAATCGAGTTT-CTT---TA-AACTAAASizeHit CountTotal NormTotal
No Reads
droFic1
TTTACGCACA---------------------------------------------CAAGTCGCGAA-ACTT--------------------------T-------GTAATGACCA--------------GAG-----CTTCGGTGAAAAATG---------------------------------------------------------------TT---------------TGT-------------TTG---ATGATTTGAATACGCA-------------------------------------------------GCAAACGGCGTTGTTCAAAAT-------------TTT------------------------------------------------------------------------------------------------------ACACACTTACTTT----------------------------------------TACT----------------------------------T--------TGTT---ACTCTACCATAAGTAAC-ACTATCTGATAATCGCGGC----ACTCGACTATAGTTT-TTTTT-AGTGTTTTA--TTAAAACT----------------TAA------------------------------------------------------------------CC---TTCACSizeHit CountTotal NormTotal
No Reads
droKik1
CGGACGACTA---------------------------------------------TATCAT----A-TAGC--------------------------T-------GCCATAC--A--------------AAT-----GTTTGATAAA---TT---------------------------------------------------------------TTTAG-AAA-A----------------------ATA-------------------------------ATTATTACTTT-----GCTGTTTTTCAAC-----------------------------AT-------TTTT---GCATAATTTTTGAGAT------------------------------ATG------------------------------------------------------GCC------------------------------------------------ATTTT----------------------------------A--------TATTGTTCCAAAA-TTTTTGTAAAAATTTTTTGAAAATCGGA---------CGACTATATCAT-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAAGCTTCTA---------------------------------------------CTAACTGGGTAC--TA--------------------------A-------CCCACGCAGA-TCCAGTTTG----TGTTAAAATTTGGGAAAA---TGAAAGTTCTGTTTCTCTACTGGATACAAAAGTACAAAAGTATGCAACTGAGACTTTAATAGAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------AAGATTCTATAATT-------TTAAGGT----------TTATTAAAGTGCGACTGGACGA-GATGAGTACCGGGTATCATATAGTCGCGGA----ACTCCCCTATAACGC-TT----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCCGCCCCCA---------------------------------------------AAACAG----A-AATC-------TGGT---------------T-------GTAGCGCCAG------TTCGTTTATGT-----TTTTGGAAAA---TG---------------------------------------------------------------TTGCC-AAA-C----------------------T--------------------------------------------------------------------------------------------------------TTT----------------------------------CGATAG---------------------------------------------------------------TTAATTATAGTTAACTATTATTATAGCAA-----------TTATAGTATAGTTAAA----------------------------------T--------TGTGGGTGAAAGA-GATGAGTACTGGGTATAATATAGTCGGGAA----ACTCGACTATAGTCGTTCTTT-TTTGTTTATAATTAA-AC------GA-------AA----------------------TGT-------------------------------------------------AATAASizeHit CountTotal NormTotal
No Reads
dp5
TCCGCCCCCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------CAA-----TTTCAATAGA---AT---------------------------------------------------------------CAAGA-AAACGATTTCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCTCGCTCTGTCTCTCTCTAACACACAGGT---TTCATGTTCGGCTT----------------------------------T--------ACCTATTGCAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-ATA---AG-AGCTCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGA...............................21200.95190900010900
........................................................AAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.4080400000400
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTAACACACAGGT---TTCATGTTCGG......................................................................................................................................................................................................................................2630.3310100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAACACACAGGT---TTCATGTTCGG......................................................................................................................................................................................................................................2530.3310100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGGT---TTCATGTTCG.......................................................................................................................................................................................................................................2030.3310100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAACACACAGGT---TTCATGTT.........................................................................................................................................................................................................................................2230.3310100000000
.........................................................AAGGACGAA-AATC--------------------------T-------GTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3060200000040
...........................................................GGACGAA-AATC--------------------------T-------GTGGCATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060600000000
........................................................AAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------CAA-----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.2550000000500
....CCCCCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2550200000300
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-................25180.1730300000000
..............................................................CGAA-AATC--------------------------T-------GTGGCATCCA--------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000003000
........................................................AAAGGACGAA-AATC--------------------------T-------GTGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1533000000000
.......CCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCA.................................19200.1530300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-A...............26160.1320100000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-ATA---AG-AGC....24190.1120000000020
.......CCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000200
......................................................................................................................................................................................................................................CATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCTC..............................................................................................................................................................................................................................................................................21200.1020000000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCT...................................21200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTCTCTCTAACACACA.......................................................................................................................................................................................................................................................21200.1020200000000
............................................................GACGAA-AATC--------------------------T-------GTGGCATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGAGAC----------T-ATA---AG-.......23190.0510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA------TCTCAGAGAC----------T-ATA---AG-TA.....21200.0510000001000
....................................................................ATC--------------------------T-------GTGGCATCCA--------------CAA-----TTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
........CA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
........................................................AAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGA------TCTCAGAGAC----------T-ATA---A.........19200.0510100000000
TCCGCCCCCA---------------------------------------------CAAAGGACGAA-AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.......................................................................................................................................................................................................................................ATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCTC..............................................................................................................................................................................................................................................................................20200.0510100000000
.....CCCCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTC..................................19200.0510010000000
.....................................................................................................................................................................................................................................TCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCT...............................................................................................................................................................................................................................................................................21200.0510100000000
.......................................................CAAAGGACGAA-AATC--------------------------T-------GTGGCATCCA--------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGG.............................................21200.0510100000000
.................................................................................................T-------GTGGCATCCA--------------CAA-----TTTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.......CCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000001000
......CCCA---------------------------------------------CAAAGGACGAA-AATC--------------------------T-------GTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TCTCAGA...............................20200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------......................................21200.0510100000000
.....................................................................................................................................................................................................................................TCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTC................................................................................................................................................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTAACACACAGGT---TTCATG...........................................................................................................................................................................................................................................22200.0510000000100
.....................................................................................................................................................................................................................................TCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGTCTC..............................................................................................................................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAC----------T-ATA---AG-AGCT...15200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------TC....................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAA-TGTGAGTTCA----------------------------------------------------------------------------------------------------------------AGGA------T.....................................21200.0510100000000
....................................................................................................................................................................................................................................TTCATTC-------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTGT.................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
TCCGCCCCCA---------------------------------------------CAAAGGGCGAA-AATC--------------------------T-------GTGGCATCCA--------------CAA-----TTTTGACGAT----A---------------------------------------------------------------CGAGT-AAACATTTGTATTTATTTG-TATTTATTT---------------------------------------------------------GTAT-----------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------ATATTCCTAACGC----------------------------------------------------------------------------------------------------------------------GAC------------------------------------------------------------------------------------------------------------------------------AGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCCGCCCCCGC--AATTTAAAAAAAGC-----------GTTTATCTCAAAAACTATTCCA---------GC--------------------------TAGAGACAC------CATATTTGGTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-----ATTCGCTTAGTAA-----------------------------ATGCACACATTTT---GTATGCATACAAATTT------------------------------------------------------------------------------------TGACACGCCCTTTTCCGCCC------------------------------------CCG-----TAA-----TTTGAAAAACTTGA-----------------TTATAT---------------------------------------------------CCCGT-ATTTT-TATGTCTTTT-TTA---------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................TTCGCTTAGTAA-----------------------------ATGCACACATTTT---GT................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
.........................................TATCTCAAAAACTATTCCA---------GC--------------------------TAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
..........................................ATCTCAAAAACTATTCCA---------GC--------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
.......................................................TTCCA---------GC--------------------------TAGAGACAC------CATATTTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200020
..........................................................CA---------GC--------------------------TAGAGACAC------CATATTTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.................TAAAAAAAGC-----------GTTTATCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
............................................................................................................................G---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-----ATTCGCTTAGTAA-----------------------------ATG...............................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.............................................................................................................................................................................................................................................................................................................CGCTTAGTAA-----------------------------ATGCACACATTTT---G.................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..............ATTTAAAAAAAGC-----------GTTTATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.........................................................CCA---------GC--------------------------TAGAGACAC------CATATTTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................ATTCCA---------GC--------------------------TAGAGACAC------CATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------TGACACGCCCTTTTCCGCCC------------------------------------......................................................................................................................................................................................................................................21200.05101000
droVir3
TCAAAGACTA---------------------------------------------TAAAAGCTTGATAAA-----------------------------------C------CAACTTTGGTATGTTGGTGT-----TCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTGC--------------------------------------------------------------------------------------------------ATCTGGAC---TTCATATTGGGCTG-----TATTTTATGATTTAAAGAATTCAACATTTT--------AAAA--TTGACAG-AGGCAGTAGTAGGGATTTAGTAGTTGAGCA---TACTCGACTAAAGCGT-GCTTTACTTGTTTT----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................TGGTATGTTGGTGT-----TCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTATCGATCAAAAACCTTATCGAAAGCTAATTATTTAGTTATATCTCCTACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAATGTAGACTTATATGTATTTTATATAATTTCGATTTCGAGAATTTCAGACT---------------------------------------------------------------------GAT----------------------------------T--------AGAATATCAGATT-AGAGGGTTCAGGGTATCTCCTAGTCGAGCA---GTCTCGACTAGACTCT-CCTTA-CTTGTTTTTT-TT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.303100020
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................27100.202200000
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.202200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AGAATATCAGATT-AGAGGGT...................................................................................................................................................................21200.102000020
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT...................................................................................................................................................................................................................................................................................................................................................................28100.101100000
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.101100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------GAT----------------------------------T--------AGAATATCAGATT-AGAGGGT...................................................................................................................................................................25200.102000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AGAATATCAGATT-AGAG......................................................................................................................................................................18200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAAATGTAGACTTATATGTATTTTAT.......................................................................................................................................................................................................................................................................................................................................26200.102000020
................................................TACACCTTTAAA---------GC--------------------------T-------AGAGCTTGCA--------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................26100.101000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT-AGAGGGTTCAGGGTATCTCC......................................................................................................................................................24200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AGAGGGTTCAGGGTATCTCC......................................................................................................................................................22200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------T--------AGAATATCAGATT-AGAGGGTTCAGGG.............................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTAGTCGAGCA---GTCTCGAC.................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTATTTTATATAATTTCGATT...........................................................................................................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AGAATATCAGATT-AGAGGGTTCAGGGA............................................................................................................................................................28200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AGAGGGTTCAGGGTATCT........................................................................................................................................................19200.051000001
droGri2
TTATAATTAA---------------------------------------------TAAACTGCAAA-A-GT--------------------------T-------ACCTTAAGAA--------------CAA----------ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGGAAAGAGATGAT--------------------------------------------------------------------------------------------------------------------------TTAAATTTCAGGCTTATATAATTCTTGTTTAAAAGAATAA-----------------GTATATTTTACA-ACTTATTTGAGGGTATCTGGTAGTCGAGCA---CTCTCGACTACAGCAT-TCTGG-CTTG--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:25 PM