ID:

dya_370

 Coordinate:

2L:18631427-18631577 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -5.7 -5.7 -5.6

Flybase annnotation

CDS [Dyak\Pfk-cds]; exon [dyak_GLEANR_3112:5]; intron [Dyak\Pfk-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATAGCCCACTTGGATATAACCCAGCTCCAGCTGCTCGGCTAGCATAGTAGCAAAATAGGGAAACTCCCTCCCGAGTTCAATAGTGGTTCATAGTGTGTGCTTTGTGAGATATCCGTTACGATACCAGTTAGAGATATAGTGAAAAATAAAGAAAAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGTGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
************************************************************.....((.......(((...(((.((.....)).)))..)))....))*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M056
embryo
 M043
female body
 V058
head
 M026
head
......................................................................................GTTCATAGTGTGTGCTTTGTGA............................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................................................................................................CACCAGCGGCGGGGATTCCCA...... 21 0 1 2.00 2 1 0 1 0 0
....................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGC................................. 22 0 1 2.00 2 0 2 0 0 0
..............................................................................CAATAGTGGTTCATAGTGTGTGCT..................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0
........................GCTCCAGCTGCTCGGCTAG................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1
..............................................................................CAATAGTGGTTCATAGTTTGT........................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
...................ACCCAGCTCCAGCTGCTCGGCTAGCATAGT.......................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0
...........................CCAGCTGCTCGGCTAGCATAGTAGCAA..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................GAAACTCCCTCCCGAGTTCA........................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0
....................CCCAGCTCCAGCTGCTCGGCC.................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0
..................................................................................................................................................ATAAAGAAAAATGAATTCCGAGAC................................................................................. 24 1 1 1.00 1 0 1 0 0 0
...............................................................................................................................GTTAGAGATATAGTGAAAAAT....................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
......................CAGCTCCAGCTGCTCGGCTAGC............................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
...........................................................................GTTCAATAGTGGTTCATAGTGTGTGCT..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.........................................AGCATAGTAGCAAAATAGGGA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................................ATCCGTTACGATACCAGTTAGAGAT................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTGTGTGCTTTGTGAG.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................ACGATACCAGTTAGAGATATATTGA............................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
.............................................................................TCAATAGTGGTTCATAGTGTGT........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
................ATAACCCAGCTCCAGCTGCTCGGCTAGC............................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
...............................................................................................................AGCCGTTACGATACCAGTTAGAGAC................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGCGGT.............................. 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................TTGTGAGATATCCGTTACGA................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0
............................................................................................................................................TGGAATATAAAGAAAAATGAAT......................................................................................... 22 2 1 1.00 1 0 0 0 1 0
......................CAGCTCCAGCTGCTCGGCTAGCA.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
........................................................................................................................GATACCAGTTAGAGATATAGTGAAAAAT....................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
................................................................................ATAGTGGTTCATAGTGTGTGCT..................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................CGCAGAAGGACAAAGGACT.................................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................AGTTAGAGATATAGTGAAAA......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTGTGTGCTTTGTGAGAT............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..................AACCCAGCTCCAGCTGCTCGGCTAGCA.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................CCGTGGCTCGCAGAAGGACAA.......................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................AAAATGAATTCCGAGATTAATC............................................................................ 22 0 1 1.00 1 0 0 1 0 0
..................................................GCAAAATAGGGAAACTCCCTCCCGAGT.............................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
.................................................................................................................CCGTTACGATACCAGTTAGAGATATAGT.............................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.......................................................ATAGGGAAACTCCCTCCCGAGT.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................TTCCGAGATTAATCAACGATTCCTGGC............................................................... 27 0 1 1.00 1 0 1 0 0 0
.......................................CTAGCATAGTAGCAAAATAGGG.............................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................GTTAGAGATATAGTGAAAAATAAAGA.................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................AGGACAAAGGACTGGCGGTC............................. 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................CAAAGGACTGGCGGTCTT........................... 18 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................TAGAGATATAGTGAAAAATAAA.................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTGTGTGCTTTGTGAGATATC......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..................AACCCAGCTCCAGCTGCTCGGCTAGC............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0
........................................................................................................................................................................................................GAAGGACAAAGGACTGGCGGTCTT........................... 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................ATCAACGATTCCTGGCCCGTGG......................................................... 22 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................CAGTTAGAGATATAGTGAAAAA........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................CAGTTAGAGATATAGTGAAA.......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.............................................................................................GTGTGTGCTTTGTGAGATATCCGTTAC................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0
.............................AGCTGCTCGGCTAGCCTAGTCG........................................................................................................................................................................................................ 22 2 1 1.00 1 0 0 0 1 0
............................................................................................................GATTTCCGTTACGATACCAGTTAGA...................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
..............................................................................................................................AGTTAGAGATATAGTGAAAAATAAA.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................GCCCGTGGCTCGCAGAAGGACAAAGGAC..................................... 28 0 1 1.00 1 1 0 0 0 0
....................................................................................TGGTTCATAGTGTGTGCTTTGTGA............................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0
...........................................................................................................................................................................................................GGACAAAGGACTGGCGGTC............................. 19 0 1 1.00 1 1 0 0 0 0
...............................................................................AATAGTGGTTCATAGTGTGTGC...................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
....................CCCAGCTCCAGCTGCTCGGCT.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................AGGACAAAGGACTGGCGGT.............................. 19 0 1 1.00 1 1 0 0 0 0
................ATAACCCAGCTCCAGCTGCTCGG.................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
........................GCTGCAGCTGCTCGGGTAGCA.............................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 1 0
...............................................GTAGCGAAATAGGGGAACTCC....................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 1 0
TATAGCGCAATTGGATAGA........................................................................................................................................................................................................................................ 19 3 20 0.25 5 2 0 3 0 0
.ATAGCGCAATTGGATATA........................................................................................................................................................................................................................................ 18 2 14 0.07 1 0 0 0 1 0
....................................................................................................................................................................................................................................AACGGCGGGGGTTACCAGG.... 19 3 14 0.07 1 0 0 0 1 0

Anti-sense strand reads

ATATCGGGTGAACCTATATTGGGTCGAGGTCGACGAGCCGATCGTATCATCGTTTTATCCCTTTGAGGGAGGGCTCAAGTTATCACCAAGTATCACACACGAAACACTCTATAGGCAATGCTATGGTCAATCTCTATATCACTTTTTATTTCTTTTTACTTAAGGCTCTAATTAGTTGCTAAGGACCGGGCACCGAGCGTCTTCCTGTTTCCTGACCGCCAGAAGTGGTCGCCGCCCCTAAGGGTCCCGTA
***********************************************************************************************************************************************.....((.......(((...(((.((.....)).)))..)))....))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V058
head
 GSM1528802
follicle cells		 V120
male body
.................ATTGGGTCCAGGTTGACGA....................................................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0
......GGTGAACCGATATCGGGT................................................................................................................................................................................................................................... 18 2 8 1.25 10 10 0 0 0
................................................................................................................................................................................................................................GTGGTCGCCGGCCACAAGGGTC..... 22 3 2 0.50 1 0 1 0 0
...........................................................................................................................TGGTCAATCCCTGTGTCACT............................................................................................................ 20 3 5 0.20 1 0 1 0 0
................TATTGGGTGCAGGTTGACG........................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1
................................................................................................................................................................................TGCTAAGGACCGGTC............................................................ 15 1 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:18631377-18631627 + dya_370 TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CTGCTCGGCTAGCATAGTAG----------------------------------------CAAAA----------T----------------------------------------------------------------------------------AGGGAAACT----CCCT---------CCCGAGT----TCAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGAGA---------TATCCGTTA--CGATACCAGTTAGAGAT----AT----AGTG-----AAAA------------AT-AA----------------AGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGTGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droEre2 scaffold_4929:8372404-8372654 - der_1282 TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CTGCGCGACTCGCATAGCTG----------------------------------------CAATA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------TCCGAGT----CCAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGCGA---------TAGCCGTTA--CGATCCCAGTTAGAGAT----AT----AGTG-----AAAA------------AG-TG----------------AGAA---------ATATGAATTCCGAGATTAATCAACGTTTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droSec2 scaffold_1:3614430-3614684 + dse_634 TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCAGCTCGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTGCGA---------TATCCGTTA--CGATCCCAGTTAGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droSim2 2r:6774687-6774941 + dsi_18854 TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCAGCTCGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTGCGA---------TATCCGTTA--CGATCCCAGTTAGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
dm3 chr2R:5998774-5999028 + TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCTGCTCGCATAGTTG----------------------------------------CAAAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGCGA---------TATCCGTTA--CGACCCCAGTTTGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droEug1 scf7180000409209:182085-182407 - TATAGGCCAT-TTCAACATATATA-----TATA----------ACCCA--------GCT--CC--AG---CTGCGTGGTTAGAATAGTTGAAA----------AAATACAATCAAAATTA--------------ACTGGATAATAT---------------------------------------------------------------------------------AGGAGAAAAG--A-CTTT----CCT--AC---ATCCAAT--ATAGTGCATAACAGTTGGTGGTTCCTAGT-------------T-TTGT-GTGT-TTGTGCGAT-----A-ATATCCCTTA--ACATCTGAGATACATTTAC--AT----AGTTAC---AAAA-------------T-AAC--AAAAAATA--AGCAAAA---------ATATGAATTCCGAGATTAATCAACGATTCCTGGCCCGTGGCTCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGAAT
droBia1 scf7180000301754:335881-336168 - TATAGCCCAC-TTGG--------A-----TACA----------GCCCA--------GCTCTCCAGAG---CTGCGTGGTTAGGATATTCGAAGAG-----------------------------------CAATACCTGATA------------------------------------------------------------------------------------ATAGGGAGACA----CCGT---------CCCGAAC-----CCATAGTGCACAACAGTCGGTAGTTCCTAGA------------GT-GTGTGGTGCCCAGTGAGAG-----ATATATCCCCTC--GCAACCGAGATACAGAT----AG----AGTT-----A--A------------AA-AA----------------AAAA---------ACATGAATTCCGAGATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAGGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droTak1 scf7180000415363:234890-235171 - TATAGCCCAT-TTGG--------A-----TATA----------ACCCA--------GCTCTCC--AG---CTGCGTGGTTAACATAGTTGAA---------------------------------------AGAACTTGAT----------------------------------------------------------------------------TGGTCGACAGTAGGGAAATT----CTTT---------CCCGA------ACCATAGTGCATAACAGTTTGTTGATCCTAGT------------GT-GTGT-GTGCCCAGTGAGA---------TATCCCCTA--ATATCCGAGATACAGAT----AT----AGTT-----A-AA------------AG-A-------------------AA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droEle1 scf7180000491214:78977-79278 - TAAAGCCCATTTTGG--------A-----TACA----A---TAGCCCA--------GCT--CC--AG---CTGTGTGGTTAAGAT------------------------------------ATAGTTA--AAA-A----------T----------------------------------------------------------------------------------CGGGAAGTA----CCAT-------CTACCGA------TAGATAGTGCTTAACAGGTCCCTTTTCCTATA------------GC-GTGT-GTGC-TTGTGAGAT-----ATATATCCCTTATTATATCCGAGATACAGAT----A-ATAGAGTGGGAGGAAAAAAAAAAATAAAA------------ATAA--AATAGAA---------AAATGAACTCCGAAATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droRho1 scf7180000777200:191281-191585 + TATAGCCCATTTTGG--------A-----TATA----A---TAACCCA--------GCT--CC--AG---CTGCGTGGTTAAAATAT----------------------------------ATAGTT---CAAAA-T--------AGGGGAAAA-------------------------------T------------------------------------------A-GGAAATA----CCTT---------CCCG--T----TTAATAGTGCATAACAGT-------TCCTAGTCCTATA------TA-GTGT-GTGC-TTGTGAGAT-----ATATATCTCCTTTGATATCCGAGATACAGAT----A-ATTGAGTGGG---AGAA-------------A-GAC--AAAAAAAAAATATAGAA---------AAATGAACTCCGAGATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droFic1 scf7180000453948:541511-541778 - TATAGCCCAT-TTGG--------A-----CTCG----------GCCCA--------GCT--CC--AG---CTGCGCGGTTAAAATAGTTAAAGAGTAAAATAGTGATCG---------------------------------------------------------------------------------------------------------------------GTGGGGAGATA----TTAT---CCCTTTG-----------CCATAGTGCATAACAGTT----ATTCCCAGT---------------GTGT-GTGTTTTGTGCGA---------CATCCGTTA--ATAACCGAGATACAGAT----AT----AGT-------------------------------------------AGAA---------AAATGAATTCCGAGATTAATCAACGCTTCCTGGCCCGCGGCTCGCAGAAGGACAAGGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droKik1 scf7180000302386:17064-17362 - TATAGCCACT-TTGG--------A-----TATA----ACATTTGCCCA--------GCT--CC--AG---CTGT--AGTT-------------------------CTCGGTTCTCGAGGAAATAGTTTGGAAAAC----------C----------------------------------------------------------------------------------AGGGAAACCAAAGCCCTTATCCCC--A---AAACCG----------------------------ATAG---TGTGTGCTGTGCG-TGT------GTGTGCGTTACGTTATATA-CCGTTA--ATAACCGAGATACAGAT----------AGCG-----AAAAGAGAGA-------GT-GC--ATAGAACA--AGTAGAA---------CCATGAATTCGGAGATTAATCAACGCTTCCTGGCCCGCGGCTCACAGAAGGATAAGGGCCTGGCCGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droAna3 scaffold_13266:6027393-6027754 - AATAGCCAGTTTTGG--------A-----TATTAATTACATTTAACCA--------GTT--CC--AG---TTGCTCGGTTATTAAATTAA-------------TA----------------ATAGTTT--AAA-T-T--------CCGGAATAATTTTTTTTTTTGGTTTTTCGTAATCAAAAAAAAAAAAAACCAAACCAAACCCTTAACTTGAATTATCC----TCCGAG-ACCT----CCCC---------CCCGA--------------------------------CAGAG-----TGTGC---GCG-TGT-GTGT-GGGTGTGAT-------TTATCCATTA--CGGTTCGAGATACAGAT----AT----AGTTTG---AAAAAAAAAAAGAAAA---------------------AGAAAATTAGTCAACATGAATTCTGAAATTAATCAACGATTCCTGGCGCGTGGATCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCAT
droBip1 scf7180000395839:187431-187751 - AATAGCCAGT-TTGG--------A-----TATTAATTACACTTAACCA--------TCT--CC--AGCTCCTGCTCGGTTATTAAATTAA-------------T--------------TAAATAGTTT--AAA-T-TTAATA---------------------------------------AAAAAAAAAAAAC--GACCAAACCCTAAACTTGA-TTATCC----TCCGAG---------------------------ACCCGAC--------------------------A--G---AGTGTGC---GCG-TGT-GTGC-GGGTGTGAT-----T-ATATCCGTAA--CTGTTCAAGATACAGATAT--AT----ATTTAT---AAAA------------AT-AT-----A----------AAAAAATTAGTCATCATGAATTCTGAAATTAATCAACGATTCCTGGCGCGTGGATCGCAGAAGGACAAGGGATTGGCTGTCTTTACCAGCGGCGGGGATTCCCAGGGCAT
dp5 3:9612024-9612132 + AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAATTCG---CCATGAACTCCGAAATTAATCAACGTTTTCTGGCCCGCGGCTCGCAGAAGGACAAGGGGCTGGCAGTCTTCACCAGCGGGGGGGACTCCCAGGGCAT
droPer2 scaffold_4:4936948-4937085 + CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATT----TT----ATCA-----AAGA------------AT-TAATTC-A---------AAGAAAATTCG---CCATGAACTCCGAAATTAATCAACGTTTTCTGGCCCGCGGCTCGCAGAAGGACAAGGGGCTGGCAGTCTTCACCAGCGGGGGGGACTCCCAGGGCAT
droWil2 scf2_1100000004513:3355513-3355607 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTCTGATATTAATCAACGTTTCCTGGCCCGGGGTTCGCAGCGGGACAAGGGATTGGCCGTCTTTACCAGCGGAGGTGATTCTCAAGGCAT
droVir3 scaffold_12875:19073347-19073464 + GAC------------------------------------------TTA--------ACT--AA--AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA---------AAATGAATAGTGATATTAACCAACGTTTCCTGGCTCGCGGCTCGCAGCGTGACAAGGGCCTGGCCGTCTTCACCAGCGGCGGCGACTCGCAGGGCAT
droMoj3 scaffold_6496:12755511-12755609 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AAATGAATAGTGATACTAATCAACGTTTCCTGGCACGCGGCTCCCAGCGCGACAAGGGCCTGGCCGTCTTCACCAGCGGTGGCGACTCCCAGGGCAT
droGri2 scaffold_15245:13104716-13104996 + CGCAGCATAC-TC-ATTACAAATTCTTGACAT------------CCCACAAAGTCTTCT--CC--AC---TTGCTCGGCTTACGATCTAG-------------TGATTCATTCAAAACCA-----------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------------C--G---CCTGTGT---GCG-TGT-GTGT-GTGTGTGT---------TACTCTTTT-GTTTTTCGAAT--CAATT----A-ACTCTGCTAA-------AAAAAAGAAAGAAGT-GA--ATTAGTTA--AAAAAAA---------AAATGAATAGTGAGAATCATCAACGTTTCCTTGCGCGCGGCTCGCAGCGCGACAAGGGTTTGGCCGTCTTCACCAGCGGCGGCGATTCCCAGGGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CTGCTCGGCTAGCATAGTAG----------------------------------------CAAAA----------T----------------------------------------------------------------------------------AGGGAAACT----CCCT---------CCCGAGT----TCAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGAGA---------TATCCGTTA--CGATACCAGTTAGAGAT----AT----AGTG-----AAAA------------AT-AA----------------AGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGTGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................GTTCATAG-----------------TGT-GTGCTTTGTGA.............................................................................................................................................................................................................2212.00200000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCGGCGGGGATTCCCA......2112.00201000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGC.................................2212.00200200000000
..........................................................................................................................................................................................................................................................................CAATAGTG--------------GTTCATAG-----------------TGT-GTGCT...................................................................................................................................................................................................................2412.00200000020000
........................................................GCT--CC--AG---CTGCTCGGCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
...........................................ACCCA--------GCT--CC--AG---CTGCTCGGCTAGCATAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
.............................................................CC--AG---CTGCTCGGCTAGCATAGTAG----------------------------------------CAA................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................GAAACT----CCCT---------CCCGAGT----TCA.........................................................................................................................................................................................................................................................................2011.00101000000000
............................................CCCA--------GCT--CC--AG---CTGCTCGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AT-AA----------------AGAA---------AAATGAATTCCGAGAC.................................................................................2411.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................GTTAGAGAT----AT----AGTG-----AAAA------------AT-................................................................................................................................2111.00100000010000
..............................................CA--------GCT--CC--AG---CTGCTCGGCTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...................................................................................................................................................................................................................................................................GT----TCAATAGTG--------------GTTCATAG-----------------TGT-GTGCT...................................................................................................................................................................................................................2711.00100000010000
................................................................................AGCATAGTAG----------------------------------------CAAAA----------T----------------------------------------------------------------------------------AGGGA............................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................ATCCGTTA--CGATACCAGTTAGAGAT----..................................................................................................................................................................2511.00100000010000
....................................................................................................................................................................................................................................................................................................ATAG-----------------TGT-GTGCTTTGTGAG............................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................TCAATAGTG--------------GTTCATAG-----------------TGT-GT......................................................................................................................................................................................................................2211.00100000010000
..............................ATA----------ACCCA--------GCT--CC--AG---CTGCTCGGCTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGCGGT..............................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................TTGTGAGA---------TATCCGTTA--CGA....................................................................................................................................................................................2011.00100000100000
..............................................CA--------GCT--CC--AG---CTGCTCGGCTAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................GATACCAGTTAGAGAT----AT----AGTG-----AAAA------------AT-................................................................................................................................2811.00100000010000
............................................................................................................................................................................................................................................................................ATAGTG--------------GTTCATAG-----------------TGT-GTGCT...................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACT....................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................AGTTAGAGAT----AT----AGTG-----AAAA------------...................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................ATAG-----------------TGT-GTGCTTTGTGAGA---------T.................................................................................................................................................................................................2111.00100100000000
................................A----------ACCCA--------GCT--CC--AG---CTGCTCGGCTAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCTCGCAGAAGGACAA..........................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A---------AAATGAATTCCGAGATTAATC............................................................................2211.00101000000000
.........................................................................................G----------------------------------------CAAAA----------T----------------------------------------------------------------------------------AGGGAAACT----CCCT---------CCCGAGT----............................................................................................................................................................................................................................................................................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................CCGTTA--CGATACCAGTTAGAGAT----AT----AGT.........................................................................................................................................................2811.00100000010000
......................................................................................................................................A----------T----------------------------------------------------------------------------------AGGGAAACT----CCCT---------CCCGAGT----............................................................................................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGAGATTAATCAACGATTCCTGGC...............................................................2711.00100100000000
..............................................................................CTAGCATAGTAG----------------------------------------CAAAA----------T----------------------------------------------------------------------------------AGGG.............................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................GTTAGAGAT----AT----AGTG-----AAAA------------AT-AA----------------AGA...........................................................................................................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAAAGGACTGGCGGTC.............................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGACTGGCGGTCTT...........................1811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................TAGAGAT----AT----AGTG-----AAAA------------AT-AA----------------A.............................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................ATAG-----------------TGT-GTGCTTTGTGAGA---------TATC..............................................................................................................................................................................................2411.00100000010000
................................A----------ACCCA--------GCT--CC--AG---CTGCTCGGCTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACAAAGGACTGGCGGTCTT...........................2411.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGATTCCTGGCCCGTGG.........................................................2211.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................CAGTTAGAGAT----AT----AGTG-----AAAA------------A..................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................CAGTTAGAGAT----AT----AGTG-----AAA................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................G-----------------TGT-GTGCTTTGTGAGA---------TATCCGTTA--C......................................................................................................................................................................................2711.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGTTAGAGAT----AT----AGTG-----AAAA------------AT-AA----------------A.............................................................................................................2511.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGTGGCTCGCAGAAGGACAAAGGAC.....................................2811.00100000010000
................................................................................................................................................................................................................................................................................TG--------------GTTCATAG-----------------TGT-GTGCTTTGTGA.............................................................................................................................................................................................................2411.00100000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGGACTGGCGGTC.............................1911.00100000010000
...........................................................................................................................................................................................................................................................................AATAGTG--------------GTTCATAG-----------------TGT-GTGC....................................................................................................................................................................................................................2211.00101000000000
............................................CCCA--------GCT--CC--AG---CTGCTCGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAAAGGACTGGCGGT..............................1911.00100000010000
..............................ATA----------ACCCA--------GCT--CC--AG---CTGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CTGCGCGACTCGCATAGCTG----------------------------------------CAATA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------TCCGAGT----CCAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGCGA---------TAGCCGTTA--CGATCCCAGTTAGAGAT----AT----AGTG-----AAAA------------AG-TG----------------AGAA---------ATATGAATTCCGAGATTAATCAACGTTTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACAAAGGACTGGCGGTCTTCACC.......................2815.0050000005
.............................................................................................................................................................................................................................................................................................................................................................................AT----AT----AGTG-----AAAA------------AG-TG----------------AGAA---------A................................................................................................2111.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAAAGGACTGGCGGTCT............................2111.0011000000
.................................................................................................................................................................................................................................................................GAGT----CCAATAGTG--------------GTTCATAG-----------------TGT-........................................................................................................................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................CGTTA--CGATCCCAGTTAGA.........................................................................................................................................................................1911.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGGTCTTCACCAGCGGCGG...............2511.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCACCAGCGGCGGGGA............2011.0010000100
...................................................................................................................................................................................................................................................................GT----CCAATAGTG--------------GTTCATAG-----------------TGT-G.......................................................................................................................................................................................................................2311.0010000100
..........................................................................................................................................................................................................................................................................................................................GT-GTGCTTTGTGCGA---------TAGC..............................................................................................................................................................................................1911.0010001000
........................................................................................TG----------------------------------------CAATA----------C----------------------------------------------------------------------------------AGGGAAACT----CCC.................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................................................................................................................................................................................................................................................................................GA---------TAGCCGTTA--CGATCCCAGTTAGA.........................................................................................................................................................................2511.0010000010
........................................................................................................................................................................................................................................................................................................................................................................TAGAGAT----AT----AGTG-----AAAA------------AG-................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................AGT----CCAATAGTG--------------GTTCATAG-----------------TGT-GT......................................................................................................................................................................................................................2511.0010000100
.............................................CCA--------GCT--CC--AG---CTGCGCGACTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
......................................................................................................................................................................................................................................................................................................AG-----------------TGT-GTGCTTTGTGCGA---------TAGC..............................................................................................................................................................................................2211.0010001000
............................................................................................................................................................................................................................................................................................................................................................................GAT----AT----AGTG-----AAAA------------AG-TG----------------AGAA---------.................................................................................................2111.0010000100
.........................................................................................................................................................................................................................................................................................................................................A---------TAGCCGTTA--CGATCCCAGTTAGA.........................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................AATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGT...............................................................................................................................................................................................................2711.0010000100
.......................................................................TGCGCGACTCGCATAGCTG----------------------------------------CAATA----------C----------------------------------------------------------------------------------A................................................................................................................................................................................................................................................................................................................2611.0011000000
.........................................................CT--CC--AG---CTGCGCGACTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................AAAA------------AG-TG----------------AGAA---------ATATGA...........................................................................................1811.0011000000
..............................................................................................................................................................................................................................................................................AGTG--------------GTTCATAG-----------------TGT-GTGCT...................................................................................................................................................................................................................2011.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACAAAGGACTGGC.................................1911.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGGGGATTCCCAGGGC..2111.0010000010
................................................................................CGCATAGCTG----------------------------------------CAATA----------C----------------------------------------------------------------------------------AGGGA............................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGCGGT..............................2511.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................GAGAT----AT----AGTG-----AAAA------------AG-TG----------------AG............................................................................................................2111.0010000100
.....................................................................................AGCTG----------------------------------------CAATA----------C----------------------------------------------------------------------------------AGGGAAACT----....................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCGGCGGGGATTCCCAGGGC..2411.0010000100
.............................................CCA--------GCT--CC--AG---CTGCGCGACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................................................................................................................................................................................................................A---------TAGCCGTTA--CGATCCCAGTTAGAG........................................................................................................................................................................2511.0010000100
..........................................................................................................................................................................................................................................................................................................................GT-GTGCTTTGTGCGA---------TAGCC.............................................................................................................................................................................................2011.0010001000
.......................................................................................................................................................................................................................................................................................................................................................CGTTA--CGATCCCAGTTAGAG........................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................GTTA--CGATCCCAGTTAGAGA.......................................................................................................................................................................2011.0010000100
droSec2
TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCAGCTCGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTGCGA---------TATCCGTTA--CGATCCCAGTTAGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................TA----------ACCCA--------GCT--CC--AG---CGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020101
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCCGCGGCTCGCAGAAGGA.............................................2311.0010010
................................................................................CGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----....................................................................................................................................................................................................................................................................................................2511.0010001
...................................................................................................................................................................................................................................................................................................................................................................................AT----AGTG-----CAAA------------AG-AT----------------TGAA---------A................................................................................................1911.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGGTCTTCACCAGCGGCGGGG.............2711.0011000
............................................................................................................................................................................................................................................................................ATAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTGCG............................................................................................................................................................................................................2911.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGCCCGCGGCTCGCA...................................................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................................ATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGA...........................................................................................................2511.0010010
.................................................................................GCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAA..........................................................................................................................................................................................................................................................................................................2211.0010001
.................................................................................................................................................................................................................................................................................G--------------GTTCATAG-----------------TGT-GTGCATTGTGCGA---------TA................................................................................................................................................................................................2711.0010001
.................................................................................................................................................................................................................................................................GAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GT......................................................................................................................................................................................................................2611.0010100
...................................................................................................................................AGAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGA..................................................................................................................................................................................................................................................................................2311.0010010
..............................................................C--AG---CGGCGCAGCTCGCATAGTTG----------------------------------------CAG................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
................................................................................................................................................................................................................................................................................................GTTCATAG-----------------TGT-GTGCATTGT...............................................................................................................................................................................................................2011.0010010
............................................................................................................................................................................................................................................................................ATAGTG--------------GTTCATAG-----------------TGT-GTGCA...................................................................................................................................................................................................................2211.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGCGGT..............................2511.0010010
..........................................................................................................................................................................................................................................................................................................................GT-GTGCATTGTGCGA---------TATCCGTT..........................................................................................................................................................................................2311.0011000
.............................................CCA--------GCT--CC--AG---CGGCGCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................................................................................................................................................................................................................................................................TG--------------GTTCATAG-----------------TGT-GTGCATTGTGCG............................................................................................................................................................................................................2511.0010010
....................................................................................TAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----....................................................................................................................................................................................................................................................................................................2111.0010100
droSim2
TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCAGCTCGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTGCGA---------TATCCGTTA--CGATCCCAGTTAGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGAAGGACAAAGGACTGGCGGTC.............................2712.00200000000000002000
.............................................................................................................................................................................................................................................................................TAGTG--------------GTTCATAG-----------------TGT-GTGCATTGTG..............................................................................................................................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGAAGGACAAAGGACTGGCGGTCT............................2811.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGAAGGACAAAGGACTGGCGGT..............................2611.00100000000000001000
...................................................................................ATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----....................................................................................................................................................................................................................................................................................................2211.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGGACTGGCGGTCTTT..........................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................TA--CGATCCCAGTTAGATTTAC....................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGC.................................2211.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAA------------AG-AT----------------TGAA---------AAATGAATTCCGA....................................................................................2411.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................TGT-GTGCATTGTGCGA---------TATCCGT...........................................................................................................................................................................................2311.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACAAAGGACTGGCGGTCTT...........................2511.00100100000000000000
...............................................................................TCGCATAGTTG----------------------------------------CAGAA----------C----------------------------------------------------------------------------------AGGGAAACT----....................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAAGGACTGGCGGTCTT...........................2811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGACAAAGGACTGGCGGG..............................2411.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATTCCTGGCCCGC...........................................................1811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCGCGGCTCGCAGAAGGACAAA.........................................2611.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACAAAGGACTGGCGGG..............................2211.00101000000000000000
dm3
TATAGCCCAC-TTGG--------A-----TATA----------ACCCA--------GCT--CC--AG---CGGCGCTGCTCGCATAGTTG----------------------------------------CAAAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----ACAATAGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGCGA---------TATCCGTTA--CGACCCCAGTTTGATTTACATAT----AGTG-----CAAA------------AG-AT----------------TGAA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................GT----ACAATAGTG--------------GTTCATAG-----------------T...........................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CCAGTTTGATTTACATAT----............................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGATTAATCAACGATTCCTGGCC..............................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................A----------ACCCA--------GCT--CC--AG---CGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGGGGATTCCCAGGGC..2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATAG-----------------TGT-GTGCTTTGTGCGA---------T.................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGCCCAC-TTGG--------A-----TATA----------ACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATAG-----------------TGT-GTGCTTTGTGCGA---------TATCCGTT..........................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AGTG--------------GTTCATAG-----------------TGT-GTGCTTTGTGC.............................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCGGCTCGCAGAAGGACA...........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTGATTTACATAT----AGTG-----CA.................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTACATAT----AGTG-----CA.................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................AAAA----------C----------------------------------------------------------------------------------AGGGAAACT----CCCT---------ACCGAGT----AC..........................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACAAAGGACTGGCG................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GTGCGA---------TATCCGTTA--CGACCCC................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEug1
TATAGGCCAT-TTCAACATATATA-----TATA----------ACCCA--------GCT--CC--AG---CTGCGTGGTTAGAATAGTTGAAA----------AAATACAATCAAAATTA--------------ACTGGATAATAT---------------------------------------------------------------------------------AGGAGAAAAG--A-CTTT----CCT--AC---ATCCAAT--ATAGTGCATAACAGTTGGTGGTTCCTAGT-------------T-TTGT-GTGT-TTGTGCGAT-----A-ATATCCCTTA--ACATCTGAGATACATTTAC--AT----AGTTAC---AAAA-------------T-AAC--AAAAAATA--AGCAAAA---------ATATGAATTCCGAGATTAATCAACGATTCCTGGCCCGTGGCTCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGAATSizeHit CountTotal NormTotal
No Reads
droBia1
TATAGCCCAC-TTGG--------A-----TACA----------GCCCA--------GCTCTCCAGAG---CTGCGTGGTTAGGATATTCGAAGAG-----------------------------------CAATACCTGATA------------------------------------------------------------------------------------ATAGGGAGACA----CCGT---------CCCGAAC-----CCATAGTGCACAACAGTCGGTAGTTCCTAGA------------GT-GTGTGGTGCCCAGTGAGAG-----ATATATCCCCTC--GCAACCGAGATACAGAT----AG----AGTT-----A--A------------AA-AA----------------AAAA---------ACATGAATTCCGAGATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAGGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droTak1
TATAGCCCAT-TTGG--------A-----TATA----------ACCCA--------GCTCTCC--AG---CTGCGTGGTTAACATAGTTGAA---------------------------------------AGAACTTGAT----------------------------------------------------------------------------TGGTCGACAGTAGGGAAATT----CTTT---------CCCGA------ACCATAGTGCATAACAGTTTGTTGATCCTAGT------------GT-GTGT-GTGCCCAGTGAGA---------TATCCCCTA--ATATCCGAGATACAGAT----AT----AGTT-----A-AA------------AG-A-------------------AA---------AAATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droEle1
TAAAGCCCATTTTGG--------A-----TACA----A---TAGCCCA--------GCT--CC--AG---CTGTGTGGTTAAGAT------------------------------------ATAGTTA--AAA-A----------T----------------------------------------------------------------------------------CGGGAAGTA----CCAT-------CTACCGA------TAGATAGTGCTTAACAGGTCCCTTTTCCTATA------------GC-GTGT-GTGC-TTGTGAGAT-----ATATATCCCTTATTATATCCGAGATACAGAT----A-ATAGAGTGGGAGGAAAAAAAAAAATAAAA------------ATAA--AATAGAA---------AAATGAACTCCGAAATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droRho1
TATAGCCCATTTTGG--------A-----TATA----A---TAACCCA--------GCT--CC--AG---CTGCGTGGTTAAAATAT----------------------------------ATAGTT---CAAAA-T--------AGGGGAAAA-------------------------------T------------------------------------------A-GGAAATA----CCTT---------CCCG--T----TTAATAGTGCATAACAGT-------TCCTAGTCCTATA------TA-GTGT-GTGC-TTGTGAGAT-----ATATATCTCCTTTGATATCCGAGATACAGAT----A-ATTGAGTGGG---AGAA-------------A-GAC--AAAAAAAAAATATAGAA---------AAATGAACTCCGAGATTAACCAACGATTCCTGGCCCGCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droFic1
TATAGCCCAT-TTGG--------A-----CTCG----------GCCCA--------GCT--CC--AG---CTGCGCGGTTAAAATAGTTAAAGAGTAAAATAGTGATCG---------------------------------------------------------------------------------------------------------------------GTGGGGAGATA----TTAT---CCCTTTG-----------CCATAGTGCATAACAGTT----ATTCCCAGT---------------GTGT-GTGTTTTGTGCGA---------CATCCGTTA--ATAACCGAGATACAGAT----AT----AGT-------------------------------------------AGAA---------AAATGAATTCCGAGATTAATCAACGCTTCCTGGCCCGCGGCTCGCAGAAGGACAAGGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droKik1
TATAGCCACT-TTGG--------A-----TATA----ACATTTGCCCA--------GCT--CC--AG---CTGT--AGTT-------------------------CTCGGTTCTCGAGGAAATAGTTTGGAAAAC----------C----------------------------------------------------------------------------------AGGGAAACCAAAGCCCTTATCCCC--A---AAACCG----------------------------ATAG---TGTGTGCTGTGCG-TGT------GTGTGCGTTACGTTATATA-CCGTTA--ATAACCGAGATACAGAT----------AGCG-----AAAAGAGAGA-------GT-GC--ATAGAACA--AGTAGAA---------CCATGAATTCGGAGATTAATCAACGCTTCCTGGCCCGCGGCTCACAGAAGGATAAGGGCCTGGCCGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
droAna3
AATAGCCAGTTTTGG--------A-----TATTAATTACATTTAACCA--------GTT--CC--AG---TTGCTCGGTTATTAAATTAA-------------TA----------------ATAGTTT--AAA-T-T--------CCGGAATAATTTTTTTTTTTGGTTTTTCGTAATCAAAAAAAAAAAAAACCAAACCAAACCCTTAACTTGAATTATCC----TCCGAG-ACCT----CCCC---------CCCGA--------------------------------CAGAG-----TGTGC---GCG-TGT-GTGT-GGGTGTGAT-------TTATCCATTA--CGGTTCGAGATACAGAT----AT----AGTTTG---AAAAAAAAAAAGAAAA---------------------AGAAAATTAGTCAACATGAATTCTGAAATTAATCAACGATTCCTGGCGCGTGGATCGCAGAAGGACAAAGGATTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................TTA--CGGTTCGAGATACAGA.......................................................................................................................................................................1912.002000002
..................................................................G---TTGCTCGGTTATTAAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGGCGCGTGGATCGCAGAAGG..............................................2512.002200000
...........................................AACCA--------GTT--CC--AG---TTGCTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCGTGGATCGCAGAAG...............................................2012.002200000
..............................................................................................................................................................................................................................................................................................................GTGC---GCG-TGT-GTGT-GGGTGTG............................................................................................................................................................................................................2121.503000003
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCGGCGGGGATTCCCAGGGCA.2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCAGCGGCGGGGATTCCC.......2211.001100000
..............................................................................................................................TT--AAA-T-T--------CCGGAATAATTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................ATCC----TCCGAG-ACCT----CCCC---------CCCGA--------------------------------..................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCGGTCTTCACCAG.....................1911.001100000
.........................................................................................A-------------TA----------------ATAGTTT--AAA-T-T--------CCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGATTGGCGGTCTTCACCA......................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGGCGGTCTTCACCAGCGGCG................2611.001000010
..................................................................................................................................................................................................................................TCCGAG-ACCT----CCCC---------CCCGA--------------------------------..................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTGGCGCGTGGATCGCAGAAGG..............................................2711.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGCGTGGATCGCAGAAGT..............................................2311.001000010
.........................................................................................................................................................................................................................TATCC----TCCGAG-ACCT----CCCC---------CCC....................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAAGGATTGGCGGTC.............................2111.001000010
.............................................CCA--------GTT--CC--AG---TTGCTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................TATCC----TCCGAG-ACCT----CCCC---------CCCGA--------------------------------..................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCGGTCTTCACCAGCGGCGG...............2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTCTTCACCAGCGGCGGGGATT..........2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACAAAGGATTGGCG................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCGGCGGGGATTCCCAGGGC..2411.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCGTGGATCGCAGAAGGACAAAG........................................2711.001100000
...............................................................................................................................................................................................................TAACTTGAATTATCC----TCCGAG-AC..........................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................CC--AG---TTGCTCGGTTATTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................AGAG-----TGTGC---GCG-TGT-GTGT-GGGTGTG............................................................................................................................................................................................................2611.001000001
..........................................................................................................................................................................................................................................................................................................................................T-------TTATCCATTA--CGGTTCGAGA.............................................................................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................................GATACAGAT----AT----AGTTTG---AA.................................................................................................................................................1911.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGCGCGTGGATCGCAGA.................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................G-TGT-GTGT-GGGTGTGAT-------TTATC..............................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................CGA--------------------------------CAGAG-----TGTGC---GCG-TGT-........................................................................................................................................................................................................................1911.001001000
...............................................A--------GTT--CC--AG---TTGCTCGGTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.......................................................................................................................................................................................................................................................................................................G-----TGTGC---GCG-TGT-GTGT-GGGTGTGAT-------T..................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTCACCAGCGGCGGG..............1911.001010000
...........................................AACCA--------GTT--CC--AG---TTGCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................AGAG-----TGTGC---GCG-TGT-GTG.....................................................................................................................................................................................................................1821.002100001
........................................................................................................................................................................................................................................................................................................................................................ATTA--CGGTTCGAGATACAGAT----AT----A...........................................................................................................................................................2411.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCACCAGCGGCGGGGAT...........2111.001100000
...........................................................................................................................................................................................................................................CT----CCCC---------CCCGA--------------------------------CAGAG-----TGTGC---GCG-TGT-........................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................AATTATCC----TCCGAG-ACCT----CCCC---------CCC....................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGCGCGTGGATCGCAG..................................................2011.001100000
........................................................................................................................................................................TTTTCGTAATCAAAAAAAAAAAAAACC..................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................................................................................................G-TGT-GTGT-GGGTGTGAT-------T..................................................................................................................................................................................................1821.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------AGAAAATTAGTCAACATGAATTCT......................................................................................2711.001010000
.........................................................................................................................................................................................................................................................................................................................................AT-------TTATCCATTA--CGGTTCGAG..............................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATTGGCGGTCTTCACC.......................2111.001100000
.......................................................................................................................................................................................................................ATTATCC----TCCGAG-ACCT----CCCC---------CCCGA--------------------------------CA................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................C---GCG-TGT-GTGT-GGGTGTGAT-------T..................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................GAG-----TGTGC---GCG-TGT-GTGT-GGGTGTG............................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................................................GAG-----TGTGC---GCG-TGT-GTGT-GGG................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................TTGAATTATCC----TCCGAG-ACCT----CCCC---------CC.....................................................................................................................................................................................................................................................................................2711.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTCCTGGCGCGTGGATC......................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTTCACCAGCGGCGG...............1911.001100000
..................................................................G---TTGCTCGGTTATTAAATTAA-------------TA----------------ATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.............................................................................................................................................................................................................................................................................................................TGTGC---GCG-TGT-GTGT-GGGTGTGA...........................................................................................................................................................................................................2311.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGTCTTCACCAGCGGC.................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................TA--CGGTTCGAGATACAGAT----AT----A...........................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................TGTGC---GCG-TGT-GTGT-GGG................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................TTA--CGGTTCGAGATACAGAT----A.................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................TGC---GCG-TGT-GTGT-GGGTGTGAT-------T..................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGCGGCGGGGATTCCCAGG....2411.001010000
................................TAATTACATTTAACCA--------GTT--CC--AG---TTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................................................................................................................................................................................................CCGA--------------------------------CAGAG-----TGTGC---GCG-TGT-GTG.....................................................................................................................................................................................................................2311.001100000
............................................ACCA--------GTT--CC--AG---TTGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................AG-----TGTGC---GCG-TGT-GTGT-GGGTGTGA...........................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................CG-TGT-GTGT-GGGTGTGAT-------TTATCC.............................................................................................................................................................................................2411.001000010
.....................................................................................................................................................................................................................................................................................................GAG-----TGTGC---GCG-TGT-GTGT-GGGTGTGA...........................................................................................................................................................................................................2611.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGATTCCTGGCGCGT...........................................................2011.001000100
.....................................................................................................................................................................................AAAAAAAAAAAACCAAACCA............................................................................................................................................................................................................................................................................................................................................2030.672020000
..............................................................................................................................................................................................................................................................................................................................................................................................G---AAAAAAAAAAAGAAAA---------------------AGAAAA........................................................................................................2320.501010000
....................................................................................................................................A-T-T--------CCGGAATAATTTTTTTTTTG................................................................................................................................................................................................................................................................................................................................................................................2320.501010000
...................................................................................................................................................................................AAAAAAAAAAAAAACCAAACC.............................................................................................................................................................................................................................................................................................................................................2140.251010000
....................................................................................................................................................................................AAAAAAAAAAAAACCAAACC.............................................................................................................................................................................................................................................................................................................................................20110.182020000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAAA---------------------AGA...........................................................................................................18200.102020000
...................................................................................................................................................................................AAAAAAAAAAAAAACCAAAC..............................................................................................................................................................................................................................................................................................................................................20110.091010000
..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAGAAAA---------------------AGAAAA........................................................................................................22140.071010000
.............................................................................................................................................................................................................................................................................................................................................................................................TG---AAAAAAAAAAAGAAAA---------------------..............................................................................................................18150.071000001
....................................................................................................................................................................................AAAAAAAAAAAAACCAAAC..............................................................................................................................................................................................................................................................................................................................................19200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................G---AAAAAAAAAAAGAAAA---------------------A.............................................................................................................18200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAAA---------------------AGAAAA........................................................................................................21200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAGAAAA---------------------AGA...........................................................................................................19200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAA---------------------AGAAAA........................................................................................................20200.051010000
...................................................................................................................................................................................AAAAAAAAAAAAAACCAAA...............................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
AATAGCCAGT-TTGG--------A-----TATTAATTACACTTAACCA--------TCT--CC--AGCTCCTGCTCGGTTATTAAATTAA-------------T--------------TAAATAGTTT--AAA-T-TTAATA---------------------------------------AAAAAAAAAAAAC--GACCAAACCCTAAACTTGA-TTATCC----TCCGAG---------------------------ACCCGAC--------------------------A--G---AGTGTGC---GCG-TGT-GTGC-GGGTGTGAT-----T-ATATCCGTAA--CTGTTCAAGATACAGATAT--AT----ATTTAT---AAAA------------AT-AT-----A----------AAAAAATTAGTCATCATGAATTCTGAAATTAATCAACGATTCCTGGCGCGTGGATCGCAGAAGGACAAGGGATTGGCTGTCTTTACCAGCGGCGGGGATTCCCAGGGCATSizeHit CountTotal NormTotal
No Reads
dp5
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAATTCG---CCATGAACTCCGAAATTAATCAACGTTTTCTGGCCCGCGGCTCGCAGAAGGACAAGGGGCTGGCAGTCTTCACCAGCGGGGGGGACTCCCAGGGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGGGGGACTCCCAGGGC..2012.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAGGGGCTGG..................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTGGCCCGCGGCTCGCAGAAG...............................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAAGGGGCTGGCAGTCT............................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGCCCGCGGCTCGCAGA.................................................2111.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCCGCGGCTCGCAGAAGGACA...........................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTCG---CCATGAACTCCGAAATTAA..............................................................................2811.0010001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCG---CCATGAACTCCGAAATTAAT.............................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTCACCAGCGGGGGG..............1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTGGCCCGCGGCTCGCA...................................................2211.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCG---CCATGAACTCCG.....................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCCGCGGCTCGCAGAA................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCAGAAGGACAAGGGGCT....................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCG---CCATGAACTCCGA....................................................................................1911.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTCTGGCCCGCGGCTCGCA...................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGCGGCTCGCAGAAGGACAAGGGGC.....................................2811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACAAGGGGCTGGCA................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTCTTCACCAGCGGGGGGGACT..........2611.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCG---CCATGAACTCCGAAA..................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTTTCTGGCCCGCG..........................................................1811.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGCGGCTCGCAGAAGGACAA..........................................2311.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGAAGGACAAGGGGCTGGC.................................2311.0010100000000
droPer2
CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATT----TT----ATCA-----AAGA------------AT-TAATTC-A---------AAGAAAATTCG---CCATGAACTCCGAAATTAATCAACGTTTTCTGGCCCGCGGCTCGCAGAAGGACAAGGGGCTGGCAGTCTTCACCAGCGGGGGGGACTCCCAGGGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGACAAGGGGCTGGC.................................2112.002000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAATTCG---CCATGAACTC.......................................................................................2112.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTCTGGCCCGCGGCTCGCA...................................................2411.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTTTTCTGGCCCGCGGC........................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCAGCGGGGGGGACT..........1911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGACAAGGGGCTGGC.................................2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGGCTGGCAGTCTT...........................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGGCTGGCAGTCTTCACCAGCGG..................2711.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGACTCCCAGGGCA.1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGCCCGCGGCTCGCA...................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCAGAAGGACAAGGGGCT....................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGGCAGTCTTCACC.......................1811.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGACAAGGGGCT....................................1811.001100000
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATTCTGATATTAATCAACGTTTCCTGGCCCGGGGTTCGCAGCGGGACAAGGGATTGGCCGTCTTTACCAGCGGAGGTGATTCTCAAGGCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGGAGGTGATTCTCAAGG...2212.00220000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGACAAGGGATTGGC.................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAGCGGAGGTGATTCTCAA.....2311.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCAGCGGGACAAGGGA......................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGGGTTCGCAGCGGGACA...........................................2211.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCGTCTTTACCAGCGGAGGT..............2511.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGACAAGGGATTGGCC................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCAGCGGGACAAGGGATT....................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAGCGGAGGTGATTCTCA......2211.00110000
droVir3
GAC------------------------------------------TTA--------ACT--AA--AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA---------AAATGAATAGTGATATTAACCAACGTTTCCTGGCTCGCGGCTCGCAGCGTGACAAGGGCCTGGCCGTCTTCACCAGCGGCGGCGACTCGCAGGGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAGTGATATTAACCAACGTTTCC...................................................................2812.002000000000000000000100010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGTGACAAGGGCCT....................................2012.002100000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCCTGGCCGTCTTCACC.......................2112.002010000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA---------AAATGAATAGTGATAT.................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCAGCGTGACAAGGGCCT....................................2211.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTTCCTGGCTCGCGGCTCG.....................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.................................................................AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA---------AAATGAATAGT......................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGGCCTGGCCGTCTTCACCAGC....................2711.001001000000000000000000000000000000000000000000000000000000000000
..C------------------------------------------TTA--------ACT--AA--AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA---------AA...............................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTGGCCGTCTTCACC.......................2011.001000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGTGACAAGGGCCTGGCCGTCT............................2811.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCACCAGCGGCGGCGACT..........2211.001100000000000000000000000000000000000000000000000000000000000000
GAC------------------------------------------TTA--------ACT--AA--AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACG...........................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGGGCCTGGCCGTCTTCACC.......................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTGACAAGGGCCTGGCC................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCAGCGTGACAAGGGC......................................2011.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------AAATGAATAGTGATA..................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTGGCCGTCTTCAC........................1911.001000000000000000100000000000000000000000000000000000000000000000
.............................................................AA--AA---CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGA---------AAATGAATAGTGATA..................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTAACCAACGTTTCCTGGCT..............................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGTGACAAGGGCCTGGCCGTC.............................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------AAATGAATAGTGATATTAACC............................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTTTCCTGGCTCGCGGC........................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGCGGCGGCGACT..........1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AAATGAATAGTGATACTAATCAACGTTTCCTGGCACGCGGCTCCCAGCGCGACAAGGGCCTGGCCGTCTTCACCAGCGGTGGCGACTCCCAGGGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCGGTGGCGACTCCCA......2012.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCGGTGGCGACTCCCAG.....2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGGTGGCGACTCCCAGG....2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGACAAGGGCCTGGCCGTC.............................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGCGGTGGCGACTCCCA......2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGACTCCCAGGGCA.1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAGCGGTGGCGACTCCCAGGG...2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAAGGGCCTGGCCGTCTTCAC........................2511.001100000
droGri2
CGCAGCATAC-TC-ATTACAAATTCTTGACAT------------CCCACAAAGTCTTCT--CC--AC---TTGCTCGGCTTACGATCTAG-------------TGATTCATTCAAAACCA-----------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------------C--G---CCTGTGT---GCG-TGT-GTGT-GTGTGTGT---------TACTCTTTT-GTTTTTCGAAT--CAATT----A-ACTCTGCTAA-------AAAAAAGAAAGAAGT-GA--ATTAGTTA--AAAAAAA---------AAATGAATAGTGAGAATCATCAACGTTTCCTTGCGCGCGGCTCGCAGCGCGACAAGGGTTTGGCCGTCTTCACCAGCGGCGGCGATTCCCAGGGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................CGGCTTACGATCTAG-------------TGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/17/2015 at 10:19 PM