dya_355

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACATGATACCGCCGGTCCTAGCACCGCACTTTCAGATCCGAGAAGCGCACGTAAGTGTATATGATCAGGATCAATAGCCAAGTCGAACTTGGCATGTCCGTCCGTATGTCCGTCTGTCCGTATGAACGCCTCGATCTCGGGAACTATAAAATCTAGAATGTGGAGATTAAGCAGGCAGCTTCCAAAGAGATATAGATGCAACGCAAAGTTGTTTTTAATTACTGCGAAGCCCTATGTTTTAATATCTTTTT ************************************************.......((((((....(((.((...(((((((...))))))).)))))...))))))..(((((((.(((....))).((((....)))).........((((......((((.....(((.....)))))))...)))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	M056 embryo
.................................................................................................................CTGTCCGTATGAACGCCTC.......................................................................................................................	19	0	17	0.06	1	1	0
............................................................................................................TCCGTCTGTCCGTATGAACGC..........................................................................................................................	21	0	20	0.05	1	0	1

TGTACTATGGCGGCCAGGATCGTGGCGTGAAAGTCTAGGCTCTTCGCGTGCATTCACATATACTAGTCCTAGTTATCGGTTCAGCTTGAACCGTACAGGCAGGCATACAGGCAGACAGGCATACTTGCGGAGCTAGAGCCCTTGATATTTTAGATCTTACACCTCTAATTCGTCCGTCGAAGGTTTCTCTATATCTACGTTGCGTTTCAACAAAAATTAATGACGCTTCGGGATACAAAATTATAGAAAAA ************************************************.......((((((....(((.((...(((((((...))))))).)))))...))))))..(((((((.(((....))).((((....)))).........((((......((((.....(((.....)))))))...)))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V058 head	M026 head	V120 male body
.....................................................................................................................................................................................................CGTTGAGTTTCAACAAAAACTAT...............................	23	3	1	1.00	1	1	0	0
.................................................TCATTCACATATACTATTC.......................................................................................................................................................................................	19	2	6	0.17	1	1	0	0
...................................................................................................AAGGCATACAGGCAGACAGGC...................................................................................................................................	21	1	11	0.09	1	0	1	0
.........................................................................................................................................................................ACGTCCGTCGAAGGTGT.................................................................	17	2	20	0.05	1	1	0	0
.........................................................................................................TACAGGCAGACAGGCATACTT.............................................................................................................................	21	0	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droYak3	2L:17119277-17119527 -	dya_355	ACATGATACCGCCGGTCCTAGCACCGCAC--TTTCAGATCCGAGAA-GCGCACGTA--AGT--GTATATGATCAGGATCAATAGCCAAGTCGAACTTGGCATGTCCGTCCGTATGTCCGTCTGTCCGT----ATGAACGCCTCGATCTCGGGAACTATAAAAT-CTAGAATGTGGAGATTAAGCAGG-CAGCTTCCAAAGAG-------------------ATATAGATGCA--ACG---CAAAGTTGTTTTTAATT-----------------------ACTGCGAAGCC----CTATG----TTTTAATATCTTTTT
droEre2	scaffold_4784:22550396-22550617 +		-------------------------------TTTCCGACCCTATAAAAT----ATA--TAT--ATTCTTGGCCAGGGTCAATAGCGGAGTCTATCTGGCTATGTCCGTCTGTCCGTATGTC----CGT----ATGAACGCCTCGATCTCAGGAACTACAAAAG-CTATAATGTTGAGATTAAGCATG-CAGCTTCCAGAG---------------------ACAT-AGCGCA--GCG---CAAATGTTGCCCAAACTTTTGAAATATATTGTGATATTTT---TTCATT------------------TCATATCTTTTA
droSec2	scaffold_244:1175-1372 +		-------------------------------AGA--------AGGAAGC----GTA--TAT--ATAATTGATCAGGATCAATAGTCCAGTCGATCTGACCATATCCTTCTGTTCGTCCGTC----CGT----ATGAACGCCTTGATCTCACGAACTTTAAAGG-CCAGAAGGTTTATATTAGGCACA-CAGATTCTAGAG---------------------ACATAGACGCA--ACG---CAAGTTTGTTGATCCAT-----------------------ACTGCCACGCC----CA-CTCTAA---------CGC-CC
droSim2	x:20815493-20815696 +		-------------------------------GGTA-----CTATAA-GTGAAAGTA--TAT--ATTCTTGATCAGGATCGATAGCCGAGTCGATCTGGCACTATCCGTCTGTCCGTCTGTCCGTCCGT----ATGAACGTCGGGATCTCGGGAACTATAAAGG-CTAG----TTGAGATTAAGCATG-TAGCTTCCAGAG---------------------ATATAGACGCA--GCG---CATGTCTGTTTAAAAAT-----------------------GTTGCCACGAC----CA-ATCTAA---------CGC-CC
dm3	chr3R:381666-381873 -		G--------------TCCTAACATCGAAACGTTTCCGACCACATAAAAT----ATA--TAT--ATTCTTTATCAAGATCAATAGCCGAGTCGATATGGCCATGTCCATCTGTC------------CGT----ATGAACGTCGATATCTCAGGAACTTTAAAAG-CTATAAGGCTGAGATTACGCACA-CAGATTCTGCAG---------------------AAATAGACGTA--GCT---CAAGAAA-----------------AACGTTCTGATACTTG----------------------------TTTGTTTTATT
droEug1	scf7180000406964:139910-140103 -		CTGTT--------------------------CTTCCAAACCAATCC--C----ACA--TAT--ATTTATGATCTGGATCAATTGCCAAGTTGATTAAGCCATGTCCGTCCGTCCGTCTGTT----CGT----ATGAACGCTGAGATCTCAGGAACTAAAAGAT-ATACAAAGTTGAGATTAAGCATA-CAGATTCTTGAA---------------------ATAACTATTCA--GCG---CACGTTTATTTCATG-------------------------CCTGCCACGCC----------------------------
droBia1	scf7180000301233:6285-6498 +		-------------------------------TTTCCGACCCCATAAAGT----ATA--TTTATATTCTTGATTAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTTCGTCTGTC----CGT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-GTAGAGCCGTCAGACTTGCCATG-CAGATTCCTGAG---------------------GTTCCTGCGCA--GCG---CAAGTTTGTTTGTGGTG-----------------------GCCGCAGTTGT----CA-TG----CTAAAAAATTGTTTT
droTak1	scf7180000415815:35824-36034 -		-------------------------------TTTCCGACCCCATAAAGT----AAA--TAT--ATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCCGT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-CTAGAAGATTGACATTTTGCATG-CAGATTCTAGGA---------------------GCTCTTACGCA--GCG---CAAGTATGTTTCAAAAG-----------------------GGTGCCACGCC----CC-CTCTAA---------CGCCCT
droEle1	scf7180000491107:97023-97210 -		-------------------------------TTTCCGACCCCACAAACT----ATA--TAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTTTGTCTGGCCGTCTGTCCGTCTGTATGAACGTCGAGATTTCGGAAACTATAAAAA-CTAGAGATTTGGGATTGGGCATG-CAGGTTCTAGTG---------------------TTTCCTAAGCA--GCG---CAAGTTCATTTCAAA----------------------------------------------------------------
droRho1	scf7180000775201:4255-4473 -		-------------------------------TTTCCGACCCTATAAAGT----AAA--TAT--ATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCCT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-CTAGAAGATTGGCATTTTGCATG-CAGATTCTAGGA---------------------GTTCCTAGGCA--GCG---CAATTTTGTTTCAAAAA-----------------------GGTGCCACGCC-ACAAT-CG----CTTATATACGATTTT
droFic1	scf7180000453872:218624-218793 +		-------------------------------GAAAT-----------GCGTCAATA--TGT--ATTCTTGATCAGGATCATCAAACGAGTTGATCTATGTCTGTCCGTCTGTCGCTCAGTC----CGC----ATGAACGTCGCGATCTCGGGAACTTTAAGAGAGAAGAATATTGGAGTTAAGCATG-CAGACCCTAGTG---------------------GTGAATACGCA--GCG---AAAGAAG--------------------------------------------------------------------TTTT
droKik1	scf7180000302366:60849-60991 -		---------------------------------------------AAGT----ATA--TAT--ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGT----CTGTCCGTCCGTCTGTCCGTTTCTACGCAAA-CTAGTCCCTTCAGTTTT--------------TAAAGAT-------------------ATCTGAATGAA--AC-----------------------------------------------------------------------------------
droAna3	scaffold_13034:2146860-2147027 +		------------------------------------------------------TA--TAT--ATTTTTGATCAACATCAACAGCTAAGGCGATATAGCCATGTCCGTCTGATCGTCTGTC----CGA----ATAATCGCTTGGATCTCAAAGACTATATAAG-ATAAGGCTATAAGATTTTAAATG-TAGACTTCTATA---------------------ATACCCACGCA--GAT---CAAGTTTGTCTTAAATT-----------------------TTTGC----------------------------------
droBip1	scf7180000395303:8783-8984 +		-------------------------------TCTCCGACC-CATAAAGTATGTATG--TAT--ATTCTTGACCAGCATTAACAGCCGAGTCGATAAAACCATGTCCGTCCGTGCGTCTGTCCGTCTTTCCGTATGAACGCGTGGATCTCAGAGA-TAGAGAAG-ATAGAG------GATTTGGCATG-GAGACTCCTATA---------------------AT------TCT--GTT---CAAGTCTGTTTCAAATT-----------------------TTTTCAAAA-------A-TTTTAA---------TATCTT
dp5	4_group4:5979767-5979983 -		-------------------------------TTTCCGACCCCATAAAGT----AAA--TATATA-TCTTGATCAGCATCAACAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCATCTGTCCGTCCCT----ATCGGCGCCTAGTGCTCAAAGAGTATAAGAG-CTAAAGCAACGACATTTTATATC-CGGACTTCTGTG---------------------ATATGTCAAATGGCTATATGTGCATTGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACACGTGTTTTC
droPer2	scaffold_4:1229956-1230176 -		C------------------------------TTTCCGACCCCATAAAGTATATGTA--TAT--ATTCTTGATCAGCATCAATAGCCGAATCGATAGAGTCATATCTGTCTGTCCGTCTGTCCATCCCG----ATGAGTGCCCAGATCTCAGAGCATATAAGAG-GTAGAGAAACCAAGTTAAGTATC-CACACTCCTGTG---------------------ATATCTCATTG--TTA---CAAGTGTATTTTAAAAT-----------------------GCCCCCATTCA----CT-AG----TTAAATTACACTTTT
droWil2	scf2_1100000004949:670150-670354 +		-------------------------------TTTCCGACCCCATAAAGTATATACA--TAT--ATTGTTGATCAGCATCAACAGACGAGTCGATCTAGCCTTGTCCGTCCATCCGTCTGTC----CGT----ATGA-TACCTAGATCTCGGAGACTGTAAAAG-CTAGAGCGACCAAATTTGGTATG-TAGCCTCGTGTA---------------------GTATGTAAAGT--GAT---CAAGTTTATTTCAAATT-----------------------TTTGTA--T----GT-A------------TGGAGATTTT
droVir3	scaffold_12875:9336422-9336620 +		GCA----------------------------TCTCCGACCCCATAAAGT----ACA--TAT--ATTCTTGATCAGCATTAATAGACGAGTCGATCTAGCCATGTCCGTCCGTCCGTCCGTA----TGT----ATGAACGCAAGGATCTCAGAACCTATAAGAG-CTAGAGACTTGAAATG--------TAGGTGCTCCTAGATTAGATGTAGGTGCTCCTAGTTACCGCGCA--GAT---CGAGTTTATTTCCGA--------------------------------------------------------------TT
droMoj3	scaffold_6541:2371006-2371230 +		----------------------------------CAGACCCCACAAAGT----ATATATAT--ATTCTTGATCAGGGCGACGAGCTAAGTCGATTTGGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGTATGTATGAACGCATCGATCTCAGAAGATATAAGAG-CTAGAGACTTGAAATTTTTTTTCCTAGGTCCGTGTA---------------------TATCACACGCA--CAT---CAAGTTTTTCTTTAAAT-----------------------ATCGACAACTACTCCCGATA----TTTTATTATCGATTA
droGri2	scaffold_15110:23987294-23987483 -		---------------------------------------------AAGT----ATA--TAT--ATTCTTTATCAGGGTCAACAACCGAGTCTATGTAGCCATGTTCGTCTGTCCGTCCGTCTGTCTGT----ATAAACACGCAGATCTCAGAGACAATAACAG-TTAGAGACTTCAAATTTGGAAAA-TAGATTCTCGTA---------------------TGCCAGGCGCA--GAT---CAAGTTTGCTTTATTTT-----------------------ATCGA--CT----GCCTG---------------TGTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

ACATGATACCGCCGGTCCTAGCACCGCAC--TTTCAGATCCGAGAA-GCGCACGTA--AGT--GTATATGATCAGGATCAATAGCCAAGTCGAACTTGGCATGTCCGTCCGTATGTCCGTCTGTCCGT----ATGAACGCCTCGATCTCGGGAACTATAAAAT-CTAGAATGTGGAGATTAAGCAGG-CAGCTTCCAAAGAG-------------------ATATAGATGCA--ACG---CAAAGTTGTTTTTAATT-----------------------ACTGCGAAGCC----CTATG----TTTTAATATCTTTTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................CTGTCCGT----ATGAACGCCTC................................................................................................................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TCCGTCTGTCCGT----ATGAACGC...................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

-------------------------------TTTCCGACCCTATAAAAT----ATA--TAT--ATTCTTGGCCAGGGTCAATAGCGGAGTCTATCTGGCTATGTCCGTCTGTCCGTATGTC----CGT----ATGAACGCCTCGATCTCAGGAACTACAAAAG-CTATAATGTTGAGATTAAGCATG-CAGCTTCCAGAG---------------------ACAT-AGCGCA--GCG---CAAATGTTGCCCAAACTTTTGAAATATATTGTGATATTTT---TTCATT------------------TCATATCTTTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................TCTCAGGAACTACAAAAG-CTATAATGTA.................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0	0
.........................................................................................................................................CGCCTCGATCTCAGGAACTAC.................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................................................................AACGCCTCGATCTCAGGAAC....................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.....................................................................................................................TGTC----CGT----ATGAACGCCTCGAT.............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0

droSec2

-------------------------------AGA--------AGGAAGC----GTA--TAT--ATAATTGATCAGGATCAATAGTCCAGTCGATCTGACCATATCCTTCTGTTCGTCCGTC----CGT----ATGAACGCCTTGATCTCACGAACTTTAAAGG-CCAGAAGGTTTATATTAGGCACA-CAGATTCTAGAG---------------------ACATAGACGCA--ACG---CAAGTTTGTTGATCCAT-----------------------ACTGCCACGCC----CA-CTCTAA---------CGC-CC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................CAATAGTCCAGTCGATCTGACCATAT.......................................................................................................................................................................................................................	26	10	0.10	1	1	0	0	0
.......................................................................................................................................................................................................................................A--ACG---CAAGTTTGTTGATCCAT-----------------------ACTGC..................................	26	10	0.10	1	1	0	0	0
....................................................................................................................................................CACGAACTTTAAAGG-CCAGAAGGTT.................................................................................................................................................	25	12	0.08	1	1	0	0	0
....................................................................................................................................ATGAACGCCTTGATCTCACG.......................................................................................................................................................................	20	12	0.08	1	0	0	0	1
......................................................................................................................GTC----CGT----ATGAACGCCTTGATCTCACG.......................................................................................................................................................................	26	12	0.08	1	1	0	0	0
...............................................................................................................................T----ATGAACGCCTTGATCTCACGT......................................................................................................................................................................	22	12	0.08	1	0	1	0	0
....................................................................................................................CCGTC----CGT----ATGAACGCCTTGATC............................................................................................................................................................................	23	12	0.08	1	1	0	0	0
...............................................................................................................................................................................................ATTCTAGAG---------------------ACATAGACGC........................................................................................	19	20	0.05	1	0	0	1	0

droSim2

-------------------------------GGTA-----CTATAA-GTGAAAGTA--TAT--ATTCTTGATCAGGATCGATAGCCGAGTCGATCTGGCACTATCCGTCTGTCCGTCTGTCCGTCCGT----ATGAACGTCGGGATCTCGGGAACTATAAAGG-CTAG----TTGAGATTAAGCATG-TAGCTTCCAGAG---------------------ATATAGACGCA--GCG---CATGTCTGTTTAAAAAT-----------------------GTTGCCACGAC----CA-ATCTAA---------CGC-CC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................CGGGATCTCGGGAACTATAAAGG-C..........................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................CGGGAACTATAAAGG-CTAG----TTGAGA.............................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0
............................................................................................................................................CGGGATCTCGGGAACTATAAAGG-CT.........................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATGAACGTCGGGATCTCG.........................................................................................................................................................................	18	2	2.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGGGAACTATAAAGG-CTAG----TTGAG..............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................TCCGT----ATGAACGTCGGGATCTCGGGA......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AACTATAAAGG-CTAG----TTGAGATTAAGCA......................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CGGGATCTCGGGAACTATAAAGG-...........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGGGAACTATAAAGG-CTAG----TTGAGAT............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGGGATCTCGGGAACTATAAAGG-CTA........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGAGTCGATCTGGCACTATC......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................CGAGTCGATCTGGCACTATCCGTCT.................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................TCCGTCTGTCCGTCTGTCCGTCCGT----A..........................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TAAAGG-CTAG----TTGAGATTAAGCATG-T..................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................TGTCCGTCTGTCCGTCCGT----A..........................................................................................................................................................................................	20	17	0.71	12	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TA--TAT--ATTCTTGATCAGGATCGATAGC..........................................................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.....................................................GTA--TAT--ATTCTTGATCAGGATCGATA............................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................TA--TAT--ATTCTTGATCAGGATCGAT.............................................................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................................................TA--TAT--ATTCTTGATCAGGATCGATA............................................................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................GTA--TAT--ATTCTTGATCAGGATCGAA.............................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................TCCGTCTGTCCGTCTGTCCGA...................................................................................................................................................................................................	21	13	0.15	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................TGATCAGGATCGATAGCCGAGTC....................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................TGTCCGTCTGTCCGTCCGT----ATGAACGT...................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TAT--ATTCTTGATCAGGATCGATAGC..........................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTCTTGATCAGGATCGAT.............................................................................................................................................................................................................................................	18	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................CTTGATCAGGATCGAT.............................................................................................................................................................................................................................................	16	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................TCCGTCTGTCCGTCTGTCCGT...................................................................................................................................................................................................	21	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AGCCGAGTCGATCTGGC............................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................TTCTTGATCAGGATCGATAGC..........................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................TCCGTCTGTCCGTCTGTCCGG...................................................................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CGTCGGGATCTCGGA.......................................................................................................................................................................	15	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................ATTCTTGATCAGGATCGAT.............................................................................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................ATTCTTGATCAGGATCGA..............................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................TGATCAGGATCGATAGC..........................................................................................................................................................................................................................................	17	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................A--TAT--ATTCTTGATCAGGAT.................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................CTGTCCGTCTGTCCGT...................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................CCGAGTCGATCTGGC............................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................CTGTCCGTCCGT----ATGAACGTC..................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TGTCCGTCCGT----ATGAACGT...................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

G--------------TCCTAACATCGAAACGTTTCCGACCACATAAAAT----ATA--TAT--ATTCTTTATCAAGATCAATAGCCGAGTCGATATGGCCATGTCCATCTGTC------------CGT----ATGAACGTCGATATCTCAGGAACTTTAAAAG-CTATAAGGCTGAGATTACGCACA-CAGATTCTGCAG---------------------AAATAGACGTA--GCT---CAAGAAA-----------------AACGTTCTGATACTTG----------------------------TTTGTTTTATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................CA-CAGATTCTGCAG---------------------AAATAGACGT........................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GT----ATGAACGTCGATATCTCAGG.......................................................................................................................................................................	22	6	8.00	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	12	2	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GT----ATGAACGTCGATATCTCAGGA......................................................................................................................................................................	23	6	3.50	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GT----ATGAACGTCGATATCTC..........................................................................................................................................................................	19	7	3.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	14	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TATCTCAGGAACTTTAAAAG-CTATA......................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GT----ATGAACGTCGATATCTCAG........................................................................................................................................................................	21	7	2.57	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	1	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................ATGAACGTCGATATCTCAGGTT.....................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................T----ATGAACGTCGATATCTCTA........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GT----ATGAACGTCGATATCC...........................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................T----ATGAACGTCGATATCTCAGGAGT....................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCTGTC------------CGT----ATGAACGTC..................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CTGTT--------------------------CTTCCAAACCAATCC--C----ACA--TAT--ATTTATGATCTGGATCAATTGCCAAGTTGATTAAGCCATGTCCGTCCGTCCGTCTGTT----CGT----ATGAACGCTGAGATCTCAGGAACTAAAAGAT-ATACAAAGTTGAGATTAAGCATA-CAGATTCTTGAA---------------------ATAACTATTCA--GCG---CACGTTTATTTCATG-------------------------CCTGCCACGCC----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------------------------TTTCCGACCCCATAAAGT----ATA--TTTATATTCTTGATTAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTTCGTCTGTC----CGT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-GTAGAGCCGTCAGACTTGCCATG-CAGATTCCTGAG---------------------GTTCCTGCGCA--GCG---CAAGTTTGTTTGTGGTG-----------------------GCCGCAGTTGT----CA-TG----CTAAAAAATTGTTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------------TTTCCGACCCCATAAAGT----AAA--TAT--ATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCCGT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-CTAGAAGATTGACATTTTGCATG-CAGATTCTAGGA---------------------GCTCTTACGCA--GCG---CAAGTATGTTTCAAAAG-----------------------GGTGCCACGCC----CC-CTCTAA---------CGCCCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------------------TTTCCGACCCCACAAACT----ATA--TAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTTTGTCTGGCCGTCTGTCCGTCTGTATGAACGTCGAGATTTCGGAAACTATAAAAA-CTAGAGATTTGGGATTGGGCATG-CAGGTTCTAGTG---------------------TTTCCTAAGCA--GCG---CAAGTTCATTTCAAA----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-------------------------------TTTCCGACCCTATAAAGT----AAA--TAT--ATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCCT----ATGAACGCTGAGATCTCGGAAACTATAAAAG-CTAGAAGATTGGCATTTTGCATG-CAGATTCTAGGA---------------------GTTCCTAGGCA--GCG---CAATTTTGTTTCAAAAA-----------------------GGTGCCACGCC-ACAAT-CG----CTTATATACGATTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-------------------------------GAAAT-----------GCGTCAATA--TGT--ATTCTTGATCAGGATCATCAAACGAGTTGATCTATGTCTGTCCGTCTGTCGCTCAGTC----CGC----ATGAACGTCGCGATCTCGGGAACTTTAAGAGAGAAGAATATTGGAGTTAAGCATG-CAGACCCTAGTG---------------------GTGAATACGCA--GCG---AAAGAAG--------------------------------------------------------------------TTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------------------------------AAGT----ATA--TAT--ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGT----CTGTCCGTCCGTCTGTCCGTTTCTACGCAAA-CTAGTCCCTTCAGTTTT--------------TAAAGAT-------------------ATCTGAATGAA--AC-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

------------------------------------------------------TA--TAT--ATTTTTGATCAACATCAACAGCTAAGGCGATATAGCCATGTCCGTCTGATCGTCTGTC----CGA----ATAATCGCTTGGATCTCAAAGACTATATAAG-ATAAGGCTATAAGATTTTAAATG-TAGACTTCTATA---------------------ATACCCACGCA--GAT---CAAGTTTGTCTTAAATT-----------------------TTTGC----------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

-------------------------------TCTCCGACC-CATAAAGTATGTATG--TAT--ATTCTTGACCAGCATTAACAGCCGAGTCGATAAAACCATGTCCGTCCGTGCGTCTGTCCGTCTTTCCGTATGAACGCGTGGATCTCAGAGA-TAGAGAAG-ATAGAG------GATTTGGCATG-GAGACTCCTATA---------------------AT------TCT--GTT---CAAGTCTGTTTCAAATT-----------------------TTTTCAAAA-------A-TTTTAA---------TATCTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

-------------------------------TTTCCGACCCCATAAAGT----AAA--TATATA-TCTTGATCAGCATCAACAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCATCTGTCCGTCCCT----ATCGGCGCCTAGTGCTCAAAGAGTATAAGAG-CTAAAGCAACGACATTTTATATC-CGGACTTCTGTG---------------------ATATGTCAAATGGCTATATGTGCATTGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACACGTGTTTTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------A...........	25	4	9.25	37	0	37	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACACG.......	29	3	7.00	21	0	21	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACA.........	27	4	4.50	18	0	17	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACTTCTGTG---------------------ATATGTCAAA........................................................................................	19	6	1.67	10	0	6	0	0	0	0	0	3	1	0
.......................................................................................................................................................................................................................................................GCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACACG.......	28	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------A...........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------............	24	4	1.00	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---C...............................	23	4	0.75	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTGAAT--------GACGTT--------TTTTTT---CA------------------ACACG.......	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGAAT--------GACGTT--------TTTTTT---CA------------------ACACGT......	25	3	0.67	2	0	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTGAAT--------GACGTT--------TTTTTT---CA------------------ACACGT......	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGAAT--------GACGTT--------TTTTTT---CA------------------ACACG.......	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTTTGAAT--------GACGTT--------TTTTTT---CA------------------A...........	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...................................................................TTGATCAGCATCAACAGCCGAGT.....................................................................................................................................................................................................................................	23	13	0.46	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACTTCTGTG---------------------ATATGTCAA.........................................................................................	18	10	0.40	4	0	0	0	0	0	0	0	3	1	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTT....................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACAC........	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------ACACA.......	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CGGACTTCTGTG---------------------ATATGTCA..........................................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------AA..........	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTTTGAAT--------GACGTT--------TTTTTT---CA------------------AC..........	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---CA------------------AC..........	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTTTGAAT--------GACGTT--------TTTTTT---C...............................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TCTGTCCGTCCCT----ATCGGCG....................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................CTGTCTGTCTGTCCATCTGT.......................................................................................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................TGTCTGTCTGTCCATCTGTCCGTCC.................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TGTCTGTCTGTCCATCTGTC......................................................................................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGCTTTGAAT--------GACGTT--------TTTTTT---................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................TTGATCAGCATCAACAGCCGAGTCGA..................................................................................................................................................................................................................................	26	11	0.18	2	0	2	0	0	0	0	0	0	0	0
...................................................................TTGATCAGCATCAACAGCCGAGTCG...................................................................................................................................................................................................................................	25	11	0.18	2	0	0	0	0	1	0	1	0	0	0
.........................................................................................................TGTCTGTCCATCTGTCCGTCCC................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................TTGATCAGCATCAACAGCCGAGTC....................................................................................................................................................................................................................................	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TC-CGGACTTCTGTG---------------------ATATGTC...........................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................TCTGTCTGTCCATCTGTCCG....................................................................................................................................................................................................	20	8	0.13	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................CTGTCTGTCTGTCCATCTGTC......................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GATTGAGCCCTGTCTGTCTG................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
...............................................................................AACAGCCGAGTCGATTGAGCC...........................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................TATAAGAG-CTAAAGCAACGA...............................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................GGCGCCTAGTGCTCAAAGAT....................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGATCAGCATCAACAGCCGA.......................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGATCAGCATCAACAGCCG........................................................................................................................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TCGATTGAGCCCTGTCTGTCT.................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................TATATC-CGGACTTCTGTG---------------------AA................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................ATATC-CGGACTTCTGTG---------------------ATA...............................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................AGTCGATTGAGCCCTGTCT.....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................TTGATCAGCATCAACAGCCGAGTCT...................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

C------------------------------TTTCCGACCCCATAAAGTATATGTA--TAT--ATTCTTGATCAGCATCAATAGCCGAATCGATAGAGTCATATCTGTCTGTCCGTCTGTCCATCCCG----ATGAGTGCCCAGATCTCAGAGCATATAAGAG-GTAGAGAAACCAAGTTAAGTATC-CACACTCCTGTG---------------------ATATCTCATTG--TTA---CAAGTGTATTTTAAAAT-----------------------GCCCCCATTCA----CT-AG----TTAAATTACACTTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................TCTTGATCAGCATCAATAGCCGAA......................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.................................................................TCTTGATCAGCATCAATAGCCGAATCG...................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
.................................................................TCTTGATCAGCATCAATAGCCGAATCGA..................................................................................................................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0
.................................................................TCTTGATCAGCATCAATAGCCGAAT.....................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0
...................................................................TTGATCAGCATCAATAGCCGAA......................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................TTGATCAGCATCAATAGCCGAAT.....................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
....................................................TGTA--TAT--ATTCTTGATCAGCA..................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droWil2

-------------------------------TTTCCGACCCCATAAAGTATATACA--TAT--ATTGTTGATCAGCATCAACAGACGAGTCGATCTAGCCTTGTCCGTCCATCCGTCTGTC----CGT----ATGA-TACCTAGATCTCGGAGACTGTAAAAG-CTAGAGCGACCAAATTTGGTATG-TAGCCTCGTGTA---------------------GTATGTAAAGT--GAT---CAAGTTTATTTCAAATT-----------------------TTTGTA--T----GT-A------------TGGAGATTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................GATCTAGCCTTGTCCGTCCA................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0
........................................................................................GTCGATCTAGCCTTGTCCGTC..................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
.................................................................................................................................................................................................TCGTGTA---------------------GTATGTAAAGT--GAT---CAAGTT.........................................................................	27	20	0.10	2	0	2	0	0	0
.............................................................................................................................................TAGATCTCGGAGACTGTAAAAG-CTAGA......................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..............................................................................................................................................AGATCTCGGAGACTGTAAA..............................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
.................................................................................................................................................TCTCGGAGACTGTAAAAG-CTA........................................................................................................................................................	21	20	0.05	1	1	0	0	0	0
.......................................................................................AGTCGATCTAGCCTTGTCCGT...................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................GTA---------------------GTATGTAAAGT--GAT---CAAGTTTA.......................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

GCA----------------------------TCTCCGACCCCATAAAGT----ACA--TAT--ATTCTTGATCAGCATTAATAGACGAGTCGATCTAGCCATGTCCGTCCGTCCGTCCGTA----TGT----ATGAACGCAAGGATCTCAGAACCTATAAGAG-CTAGAGACTTGAAATG--------TAGGTGCTCCTAGATTAGATGTAGGTGCTCCTAGTTACCGCGCA--GAT---CGAGTTTATTTCCGA--------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTCC.........................................................................................................................	23	11	1.64	18	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	1	0	0	0	1	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAGATGTAGGTGCTCCTAGTTAA.............................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTCCTA.......................................................................................................................	25	11	0.73	8	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGC............................................................................................................................	20	15	0.67	10	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AT--ATTCTTGATCAGCATTAATAGACG........................................................................................................................................................................................................................................	26	6	0.67	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCT...........................................................................................................................	21	14	0.57	8	0	0	0	0	0	2	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTCTTGATCAGCATTAATAGACGAGT.....................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTCCTAG......................................................................................................................	26	11	0.45	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGCTCC.........................................................................................................................	25	11	0.45	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTC..........................................................................................................................	22	13	0.38	5	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGCTC..........................................................................................................................	24	13	0.38	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................ATTCTTGATCAGCATTAATAGACGAG......................................................................................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTCCT........................................................................................................................	24	11	0.27	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGC............................................................................................................................	22	15	0.27	4	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTG.............................................................................................................................	19	16	0.25	4	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TTAATAGACGAGTCGATCTAGCCATG........................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TCGATCTAGCCATGTCCGTC..................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TA----TGT----ATGAACGCAAGGATCTCA.........................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TA----TGT----ATGAACGCAAGGATCT...........................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGT----ATGAACGCAAGGATCTCA.........................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TAT--ATTCTTGATCAGCATTAATAG...........................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TA----TGT----ATGAACGCAAGGATCTCAGAACC....................................................................................................................................................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAACCTATAAGAG-CTAGAGACTTG................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTTGATCAGCATTAATAGACGAG......................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTCTTGATCAGCATTAATAGACGAG......................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AAGAG-CTAGAGACTTGAAATG--------TAGGT..............................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TAT--ATTCTTGATCAGCATTAATAGA..........................................................................................................................................................................................................................................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AT--ATTCTTGATCAGCATTAATAGA..........................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................ATTCTTGATCAGCATTAATAGACG........................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CTTGATCAGCATTAATAGACG........................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AG-CTAGAGACTTGAAATG--------TAGGTGC............................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGAGACTTGAAATG--------TAGGTGC............................................................................................................................	21	15	0.13	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTG.............................................................................................................................	21	16	0.13	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GAG-CTAGAGACTTGAAATG--------TAGGTG.............................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACGCAAGGATCTCAGAACCTATAAG..............................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ATCTAGCCATGTCCGTCCGTC..............................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGTCGATCTAGCCATGTCCGTC..................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAGATGTAGGTGCTCCTAGT................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTCCGTCCGTA----TGT----ATGAACG....................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGT----ACA--TAT--ATTCTTGATCAGC...................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCCGTCCGTCCGTA----TGT----ATGAACGC...................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCCGACCCCATAAAGT----ACA--TAT--ATTC............................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAGAACCTATAAGAG-CTAGAGACTTG................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGCTCCTAG......................................................................................................................	28	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGCTCCT........................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGACTTGAAATG--------TAGGTGCTCCT........................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CTTGAAATG--------TAGGTGCTCCT........................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGTGCTA..........................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGCT...........................................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGACTTGAAATG--------TAGGT..............................................................................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACGCAAGGATCTCAGAACCTAT.................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AGACGAGTCGATCTAGCCATG........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TA----TGT----ATGAACGCAAGGA..............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................ATAGACGAGTCGATCTAGCCA..........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGAACCTATAAGAG-CTAGAGA....................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CCGTCCGTA----TGT----ATGAACGCA..................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATAAGAG-CTAGAGACTTGAAAT............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAGAGACTTGAAATG--------TAGGTGTC...........................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAACCTATAAGAG-CTAGAGA....................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGAACCTATAAGAG-CTAGAGACTTG................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAGAACCTATAAGAG-CTAGAGACT..................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ATTAGATGTAGGTGCTCCTAG.................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACCTATAAGAG-CTAGAGACTTG................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACGCAAGGATCTCAGAACCTATAA...............................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GATCTAGCCATGTCCGTCCGTC..............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CTCAGAACCTATAAGAG-CTAG.......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACGCAAGGATCTCAGAACCT...................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TAT--ATTCTTGATCAGCATTAA..............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ACCTATAAGAG-CTAGAGACTTGAAATG--------...................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAACCTATAAGAG-CTAGAGACT..................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................A--TAT--ATTCTTGATCAGCATTAATAG...........................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCCGTCCGTA----TGT----ATGAACGCAAGG...............................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TCCGTCCGTCCGTCCGTA----TGT----ATGAA......................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACGCAAGGATCTCAGAACCTATAAGAG-...........................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GATCTCAGAACCTATAAGAG-CTAGAGAC...................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AT--ATTCTTGATCAGCATTAATAG...........................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTAGCCATGTCCGTCCGTCCG............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................TCTAGCCATGTCCGTCCGTCC.............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TAGATGTAGGTGCTCCTAGTT...............................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAAGAG-CTAGAGACTTGAAATG--------...................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTTGATCAGCATTAATA............................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ACCCCATAAAGT----ACA--TAT--ATTCTTGATC......................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATCTCAGAACCTATAAGAG-...........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGTCGATCTAGCCATGTCCGT...................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAGTCGATCTAGCCATGTCCG....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

----------------------------------CAGACCCCACAAAGT----ATATATAT--ATTCTTGATCAGGGCGACGAGCTAAGTCGATTTGGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGTATGTATGAACGCATCGATCTCAGAAGATATAAGAG-CTAGAGACTTGAAATTTTTTTTCCTAGGTCCGTGTA---------------------TATCACACGCA--CAT---CAAGTTTTTCTTTAAAT-----------------------ATCGACAACTACTCCCGATA----TTTTATTATCGATTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................TTAAAT-----------------------ATCGACAACTACTCCCGATA----...............	26	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................TA---------------------TATCACACGCA--CAT---CAAGTTTTTCTT...................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TAAAT-----------------------ATCGACAACTACTCCCGATA----...............	25	2	1.00	2	0	0	0	0	2	0
.............................................................................................TTTGGCCCTGTCCGTCTGTCC.............................................................................................................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
..........................................................................................................................................................................................CCTAGGTCCGTGTA---------------------TATCACA...........................................................................................	21	8	0.13	1	0	0	0	0	0	1
..........................................................................................CGATTTGGCCCTGTCCGTCTGTCCGTC..........................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.....................................................................................................TGTCCGTCTGTCCGTCCGTCCGTCCG................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................CAGAAGATATAAGAG-CTAGAGACTTGA...............................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.......................................................ATATAT--ATTCTTGATCAGGGCGACGAG...........................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................................................................................................CTGTCCGTCTGTCCGTCCGTCCGTCCGT...............................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................CTAGAGACTTGAAATTTTT........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................GTTTTTCTTTAAAT-----------------------ATCGA..................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................TCGATTTGGCCCTGTCCGTCTGTCC.............................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

---------------------------------------------AAGT----ATA--TAT--ATTCTTTATCAGGGTCAACAACCGAGTCTATGTAGCCATGTTCGTCTGTCCGTCCGTCTGTCTGT----ATAAACACGCAGATCTCAGAGACAATAACAG-TTAGAGACTTCAAATTTGGAAAA-TAGATTCTCGTA---------------------TGCCAGGCGCA--GAT---CAAGTTTGCTTTATTTT-----------------------ATCGA--CT----GCCTG---------------TGTTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_355

2L:17119327-17119477 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.6	-30.5	-30.4