dya_342

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATTTGCTGTGGCGGCGACGGCACCGTCGGCTGGGTTCTCGAAGCCATGGGTAAGTGTCGTAAGGGTATACTAGATTCGTTGAAAAGTATGTAACACGCACAGGAAATCGTTGCCGACGATATAAAGTATATATCAGATCAGGATCCATAGCCCGTCTGTACATCCGTCTGTCCGTCCGTTTGTCCGTCCGTATAAGCTCTCATATCTCAGGAACTATAAAAGCTAGAAAGTCGAAATTAAGCATACAGAT ************************************************....(((.(((.....((((((...(((...))).))))))....)))))).(((......(((.((((..(((((........(((((..((((..((((.....))))..)))))))))........))))).)))).))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M056 embryo	M043 female body	V058 head
CATTTGCTGTGGCGGCGACGG......................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0
..TTTGCTGTGGCGGCGACGGCACCGTCGGC............................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0
.........................................................................................................................................ATCTGGTTCCATAGCGCGTC..............................................................................................	20	3	3	0.33	1	0	0	1
...........................................................................TTCGTTGAAAAGTATGTAACACTTAC......................................................................................................................................................	26	2	9	0.11	1	1	0	0
.............................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAAGT...................	27	0	20	0.10	2	2	0	0
...........................................................................................................................................................................................................TATCACAGGAACTATAAAAGCTAGAAAG....................	28	1	11	0.09	1	1	0	0
..........................................................................................................................................................................................................ATATCTCAGGAACAATAAAAGC...........................	22	1	17	0.06	1	1	0	0
........................................................................................................................................................................................................TGATATCTCAGGAACTATAAAAGC...........................	24	1	20	0.05	1	1	0	0
............................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAGAAAG....................	27	0	20	0.05	1	1	0	0
.......................................................................TAGATTCGTTGAAAAGTATG................................................................................................................................................................	20	0	20	0.05	1	0	1	0

GTAAACGACACCGCCGCTGCCGTGGCAGCCGACCCAAGAGCTTCGGTACCCATTCACAGCATTCCCATATGATCTAAGCAACTTTTCATACATTGTGCGTGTCCTTTAGCAACGGCTGCTATATTTCATATATAGTCTAGTCCTAGGTATCGGGCAGACATGTAGGCAGACAGGCAGGCAAACAGGCAGGCATATTCGAGAGTATAGAGTCCTTGATATTTTCGATCTTTCAGCTTTAATTCGTATGTCTA ************************************************....(((.(((.....((((((...(((...))).))))))....)))))).(((......(((.((((..(((((........(((((..((((..((((.....))))..)))))))))........))))).)))).))).....)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V120 male body	M043 female body	M056 embryo
..........................................................................................................................................................................................CAGGCATGTCCGGGAGTATA.............................................	20	3	4	0.25	1	1	0	0
............GCCTCCGCCGTGGCAGCC.............................................................................................................................................................................................................................	18	2	14	0.07	1	0	1	0
.........................................TTCGGTACACGTTCACGGCA..............................................................................................................................................................................................	20	3	14	0.07	1	0	1	0
.............................................................TTCCCATATGATCTAAGCAACTTT......................................................................................................................................................................	24	0	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droYak3	2L:16396553-16396803 -	dya_342	CATTT-GCTG---T---GGCGGCG---AC------GG-----C------ACCGTCGGCT---------GGGTTCTCGAAGC-------CATGGGTAA-----GTGTCG-TAAGGGTATACTAGATTCGTTGAAAA-------GTATGTAACACGCACAGGAAATCGTTGCCGACGATATA-AAGTATATAT----CAGATCAGGATCCATAGCCC-GTCTGTACATCC----------G------TCT--------GTCCGTCC----G--------TTTGTCCGTCCGTATAAGCTC----TCATATCTCAGGAACTATAAAAGCTAGAAAGTCGAAATTAAGCATACAGAT-
droEre2	scaffold_4512:442483-442689 +		TA---A-----------------------------------------------------------------------------------------------AT-GGTA-TAAATGTATACTAGATTTGTTGAAAA-------GTATGTAACATTCAGAAGGAAACGTTTCCGACCATATA-AAGTATATATATTATTGATCAGGATCAATAGCCGAGTCCATCTGGCC----------ATGTCTGTCT--------GTCCGTCC----G------------TCTGTCCGTATGAACGC----CTCGATCTCAGGAACTACAAAAGCTAGAATGTTGAGATTAAGCATGCAGCT-
droSec2	scaffold_18:1231688-1231905 -		TG---GGCTTTAGA----GGG--G-CCGTGGCAA-------------------------------------------------------------CA---T-G-GGTC-GTAGGGAATACCAGATTCGTTGAAAA-------GTATGTAACAGGCAGAAGGAAGCGTTACCGACCATATA-AAGTATATATATTCTTGATCAGGATCAATAGCCGAATCCATCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTATGAACTT----CGAGACCTCAAAAACTATAAAAGCTAGAAGGTTGAGATTCAGCATACAGAT-
droSim2	2l:20747139-20747356 -		TG---GGCTTTAGA----GTG--G-CCGTGGCAA-------------------------------------------------------------CA---T-G-GGTC-GTAGGGAATACCAGATTCGTTGAAAA-------GTATGTAACAGGCAAAAGGAAGCGTTACCGACCATATA-AAGTATATATATTCTTGATCAGGATCAATAGCCGAATCCATCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTACGAACTT----CGAGACCTCAAAAGCTATAAAAGCTAGAAGGTTGAGATTCAGCATACAGAT-
dm3	chr3L:6308229-6308454 +		GC------------------GGAG---AT------GG-----CTCACGCTTC----------------AGCTGGT---------------TTACTCG---TAG-AGTA-AAACGGTATACTACATTCGTTGAAAA-------GTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATT-AAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGTC----------ATGTCCGTCT--------G----------------------------TCCGAATGAACGT----CAAGATCTTAGGAGCTATAAAAGCCAAAGGGTTGACAT-CAGCATACAGAT-
droEug1	scf7180000409527:7448-7703 +		CCTTT-GCGG---C---GGC---GATAAT------GG-----C------GGTTCCGGCCCTCTTCTTGACGTTTTTATACC-------TGTTACTTG---TAG-AATA-AAAGGGTATATTAGATTCGTTGAAAA-------GTATGTAACAATTAGAAGGAAGCGTTTCCGACTCTATA-AAGTATATATATTCTTGATCAGGATCATTAGCGAAAACGATTGAGCC----------ATGTCCGTCT--------G----------------------------TCCGTATGAACGC----TGAGATCTCAGGAACTATAAGAGATTCAAAGTTCAGATTAAGCATGAAGAT-
droBia1	scf7180000301495:565947-566174 +		CAGTT---------------------------------------------------------------GGGTTTTTAAACC-------TGTTACTCG---TAG-AGTA-AAAGGGTATACCAAATTCGTCGGAAA-------GTATGCAACAGGTAGAAGAAAACGTATCTGACCCCATA-AAGTATATATATTCTTGATCAGGATCACAAGCCGAGTCGATCTAGCC----------ATGTTCGTCT--------GTCTG--------------------TCTGTCCGTATGAACAC----TGAGATCTCAGAAGCTATAAGAGCTAGAACAGTAACACTTGACATGTAGAT-
droTak1	scf7180000412639:8572-8819 +		TT---AGTTG---TTGTGAC---G---AT------GGGTCGTCACAC---------------------GGTTTTTTATACC-------CGTTACTCG---TAG-AGTA-AAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAATAGCTAGAAGGATGCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GT------------------------CCGTCTGTATGAACGC----TGAGATCTCAGAAACTACAAAAGCTAGAAGGTTGAGATTTTCCACACATAT-
droEle1	scf7180000491104:667770-667962 -		--------------------------------------------------------------------------------------------------------------AAGGGTATATTGAATTCGTTGAAAA-------GTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATA-AAGTATATATACTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCTG--------------------TCCGTCTGTATGAACGT----CGAGATCTCGGAAACTATAAAAGCTAGAGATTTGGAACTTGGCATGCAGAT-
droRho1	scf7180000769894:2424-2686 -		TTGTT----G---TCGCAGC---G---AG------TG-----C------A------------------ACGTTTTTATACC-------CGTTACTCG---TAG-AGTA-AAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATA-AAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCTGTCTGTCTGTCTGTCTTTCTGTCCGTATGAACGC----TGAGATCTCGGAAACTATAAAAGCTACAAGATTGGCATTTTGCATGTAGAT-
droFic1	scf7180000453948:2697367-2697561 +		--------------------------------------------------------------------------------------------------------------AAGGGTATACTGCATTTGTTGAAAA-------GAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATA-GAGAATTTATATTTTTGATCAGAATCATAGGACGACTCGATCTATGTCTGTACCTTTTTGTATG------------------------------------TCCGTCCTTATTAACCT----CGAAATCTCGAGAACATTTAGATTTAGAATATTAGGATTAAATATTTAAAT-
droKik1	scf7180000299557:41195-41462 +		GC---TGGTG---C------GGCA-CCGGCGCAGCAC--CGGCGCGGCCTTC------------GGTGATATTATTATACC-------C-----------------TT-GCAGGGTATTATAATTTCAGTCAGAA-------GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATA-AAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCCGTCTGTCCG----TCCGTCTGTCCGTTTCTACGCAAACTAGTCCCTCA----GTTTTAAAGCTATCTGAATGAAACTTTGCATATAGTCT
droAna3	scaffold_12943:2846466-2846690 +		AG---C--------------------CAT----------------GG---------------------GAATTTTTATACC-------C-----TTG---C--------AGAGGGTATTATAATTTTGGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATA-AAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGC----------ATGTCCGTCTGTC----CGTCTGTCC----G------------TCTGTCTGTTTCTACGCAAACTAGTCTCTCA----GTTTTAGAGCTATCGAGTTGAAACTTTGCACACA----
droBip1	scf7180000396378:115841-116069 +		CAACT----G---CTATAGCGGCA---TC------A--------------------------------GCATCATTATACC-------C-----TTG---C--------AGAGGGTATTATAATTTTGTCCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATA-AAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGC----------ATGTCCGTCT--------GTCCGTC--------------------TGTCTGTTTCTACGCAAACTAGTCTCTCA----GTTTTAAAGCTATCGTCTTGAAACTTTGCACACA----
dp5	Unknown_group_98:14948-15189 +		GG---C--------------GGCA---AC------GA-----CTG-----------------------TCGTTTTTATACC-------CGATACTCAAAAT-G-AGTA-TTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC----------ATGTCTGTCT--------GT------------------------CCGTCCCCTTCAGCGC----CTAATGCTCAAAGACTATAAGAGCTAGAGCAACGATGTTTTGGATCCAGAC-
droPer2	scaffold_780:1975-2245 -		CACCT----G---TAGTAGC---AGTAGT------GG-----TATGGGCT------------------AAATTATTATACC-------CGATACTCAAAAT-G-AGTA-TTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGCATCAATAGCCGAGCCGATT-----------------GTCCGTCCGTCTGTCCGTCCGTCC----G--------TCTGTCCGTCCCCTTCAGCGC----CTAGTGCTCAAAGACTATAAGAGCTAGAGCAACGATATTTTGGATCCAGACT
droWil2	scf2_1100000002489:7311-7550 -		TT---CGTTG---C------GGT-----------------------------------------------GTTGTCGTCTC-------TGTCGCTCT---TGT-GGGT-GAATGGTATATTAAAGTCGCCAAAAT-------GTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACA-AAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCCTTCCG------------TCCGTCTGTATGAACAC----GCAGATCTCGGAGACTATAAGAGCTAGAGCCATCAAATTTGGTATGCAGAC-
droVir3	scaffold_12970:9655285-9655552 +		GA---C--------------AGCG---AC------GG-----CACACGTATT-----------------TGTCTTTATTCCCTGAACCCATTAAAAG---T-G-GGTA-TGAGGATATATTGTATTTTTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATA-AAGTATATATATTCTTGATCAGCACCAATAGCCGAGTCGATCTAGCC----------ATGTCCGTCCGTC----TGTCTGTCC----G--------TCTGTCCGTATGTATGAACGC----AAGGACCTGAGAACCTATAAGAGCTAGAGACTTGAAATTTTAGATGTAGGT-
droMoj3	scaffold_6498:1884670-1884907 -		TT---GATTG---C---------G---AC------GG-----TGTGGGCTCC----------------ATATTTTTATACCCTGAACCCATTGAAAA---T-G-GGAAGTCAGGGTATAATGGTTTTAT-GAAAA-------GCATGTAATAAGCAGAGGGAATCATTGCAGACCCCATG-AAGTGTA-ATATTCCTGCTCATGGCGACGAGCTGAGTCTATATAGCC----------CTGTCCGTCC--------G----------------------------TCCGTATAATCAC----GTCGATCTCAGAAGA--TATGAGCTAGAGAGCTGAAATTTTGCATGCA----
droGri2	scaffold_15074:4703806-4704025 -		TT---CGCCG---TGGTTGC---A---AT------TG-----C------CTC----------------AATTTCTTGAATC-------CATTAAAAA---T-G-GGTAAAAAGGGTATAATGGTTTTGTGCAAAT-------GTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAAGTATATATATTGTTGATCAGGATCAACGGCGGAATCGATATAGCC----------ATGTCCGTCT--------GTC------------------------------------------------TCTCAGAGACTATAAGAGCTAGAGA---CAAATTTGGAATATAGGT-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CATTT-GCTG---T---GGCGGCG---AC------GG-----C------ACCGTCGGCT---------GGGTTCTCGAAGC-------CATGGGTAA-----GTGTCG-TAAGGGTATACTAGATTCGTTGAAAA-------GTATGTAACACGCACAGGAAATCGTTGCCGACGATATA-AAGTATATAT----CAGATCAGGATCCATAGCCC-GTCTGTACATCC----------G------TCT--------GTCCGTCC----G--------TTTGTCCGTCCGTATAAGCTC----TCATATCTCAGGAACTATAAAAGCTAGAAAGTCGAAATTAAGCATACAGAT-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
CATTT-GCTG---T---GGCGGCG---AC------GG-----........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TTT-GCTG---T---GGCGGCG---AC------GG-----C------ACCGTCGGC........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAAGT....................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAGAAAG.....................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TAGATTCGTTGAAAA-------GTATG...............................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TA---A-----------------------------------------------------------------------------------------------AT-GGTA-TAAATGTATACTAGATTTGTTGAAAA-------GTATGTAACATTCAGAAGGAAACGTTTCCGACCATATA-AAGTATATATATTATTGATCAGGATCAATAGCCGAGTCCATCTGGCC----------ATGTCTGTCT--------GTCCGTCC----G------------TCTGTCCGTATGAACGC----CTCGATCTCAGGAACTACAAAAGCTAGAATGTTGAGATTAAGCATGCAGCT-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................AACATTCAGAAGGAAACGTTTCCGACCA..................................................................................................................................................................................	28	5	0.20	1	1	0	0	0	0	0	0
....................................................................................................................ATACTAGATTTGTTGAAAA-------G...................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................TCTGTCCGTATGAACGC----CTCG................................................	21	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CTCAGGAACTACAAAAGCTAGAAT......................	24	20	0.05	1	0	0	0	0	1	0	0
..................................................................................................................................................................AACGTTTCCGACCATATA-AAG..........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................GAACGC----CTCGATCTCAGG........................................	18	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAGGAACTACAAAAGCTAGA........................	20	20	0.05	1	0	0	0	0	1	0	0

droSec2

TG---GGCTTTAGA----GGG--G-CCGTGGCAA-------------------------------------------------------------CA---T-G-GGTC-GTAGGGAATACCAGATTCGTTGAAAA-------GTATGTAACAGGCAGAAGGAAGCGTTACCGACCATATA-AAGTATATATATTCTTGATCAGGATCAATAGCCGAATCCATCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTATGAACTT----CGAGACCTCAAAAACTATAAAAGCTAGAAGGTTGAGATTCAGCATACAGAT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................CAA-------------------------------------------------------------CA---T-G-GGTC-GTAGGGAATA...........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCA......................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................GCTAGAAGGTTGAGATTCAGC.........	21	20	0.05	1	0	0	0	1
............................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGC.............................................................................................................................................	25	20	0.05	1	0	1	0	0
..................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGA..........................................................................................................................................	22	20	0.05	1	1	0	0	0
...................................................................................................................................................................................................................................C----------ATGTCCGTCT--------G----------------------------TCCGTATGA............................................................	21	20	0.05	1	1	0	0	0
..........................................................................................................................................................................................TATATATTCTTGATCAGGATC...................................................................................................................................................	21	20	0.05	1	0	0	1	0
...............................................................................................................................................................................................................................TAGCC----------ATGTCCGTCT--------G----------------------------TCCGTA...............................................................	22	20	0.05	1	0	1	0	0
...............................................................................................................................................................................................................................TAGCC----------ATGTCCGTCT--------G----------------------------TCCGTATGAA...........................................................	26	20	0.05	1	1	0	0	0

droSim2

TG---GGCTTTAGA----GTG--G-CCGTGGCAA-------------------------------------------------------------CA---T-G-GGTC-GTAGGGAATACCAGATTCGTTGAAAA-------GTATGTAACAGGCAAAAGGAAGCGTTACCGACCATATA-AAGTATATATATTCTTGATCAGGATCAATAGCCGAATCCATCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTACGAACTT----CGAGACCTCAAAAGCTATAAAAGCTAGAAGGTTGAGATTCAGCATACAGAT-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGA................................................................................................................................................................................................	24	12	10.58	127	0	0	0	0	0	0	52	26	29	8	5	0	5	2	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAGCGT...........................................................................................................................................................................................	24	10	10.40	104	0	0	0	0	0	0	1	1	1	0	99	0	2	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAGCGTT..........................................................................................................................................................................................	25	10	6.80	68	0	0	0	7	0	0	1	0	2	5	49	1	2	1	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGAA...............................................................................................................................................................................................	25	10	3.60	36	0	0	0	0	0	0	3	2	20	0	9	0	2	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	26	12	1.67	20	0	0	0	1	0	0	0	0	2	3	1	0	10	3	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAGCG............................................................................................................................................................................................	23	10	1.60	16	0	0	0	1	8	0	0	0	0	0	7	0	0	0	0	0	0
.................................................................................................................................TGAAAA-------GTATGTAACAGGCAAAAGGA................................................................................................................................................................................................	26	11	1.36	15	0	0	0	0	0	0	5	4	4	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAGGTTGAG................	21	20	1.15	23	0	0	0	0	0	0	0	0	4	0	19	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAAGCTATAAAAGCTAGAAGGTTGA.................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAGCGTTA.........................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GTACGAACTT----CGAGACCTCAAAAGCT....................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAAAAGGAAGCGTTACCGACCATAT...............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GAAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	20	20	1.00	20	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CGTACGAACTT----CGAGACCT............................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ACAGGCAAAAGGAAGCGT...........................................................................................................................................................................................	18	12	0.92	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGAAG..............................................................................................................................................................................................	26	10	0.80	8	0	0	0	0	0	0	1	0	2	0	2	0	3	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGAAGCG............................................................................................................................................................................................	28	8	0.75	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
........................................................................................................................................................GGCAAAAGGAAGCGT...........................................................................................................................................................................................	15	16	0.63	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCA......................................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGC.......................................................................................................................................................................................................	24	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCATCTAGCC----------ATGTCCGTCT--------G----------------------------TCC..................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................CCATCTAGCC----------ATGTCCGTC...........................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................AGGCAAAAGGAAGCGTT..........................................................................................................................................................................................	17	15	0.47	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
................................................................................................................................TTGAAAA-------GTATGTAACAGGCAAAAGGA................................................................................................................................................................................................	27	10	0.40	4	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCAAA....................................................................................................................................................................................................	27	10	0.40	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GGCAAAAGGAAGCGTT..........................................................................................................................................................................................	16	16	0.38	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGG.................................................................................................................................................................................................	23	14	0.36	5	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	0
.....................................................................................................................................................ACAGGCAAAAGGAAGCGTT..........................................................................................................................................................................................	19	12	0.33	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGA................................................................................................................................................................................................	19	18	0.33	6	0	0	0	0	0	0	1	1	0	0	4	0	0	0	0	0	0
................................................................................................................................................ATGTAACAGGCAAAAGGAAGCGTT..........................................................................................................................................................................................	24	10	0.30	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................AGGCAAAAGGAAGCGT...........................................................................................................................................................................................	16	15	0.27	4	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGG.................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0
.....................................................................................................................................................ACAGGCAAAAGGAAGCG............................................................................................................................................................................................	17	12	0.25	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCTAGCC----------ATGTCCGTCT--------..................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAGGTTGAGAT..............	23	20	0.20	4	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAAT........................................................................................................................................	24	15	0.20	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCAAAAG..................................................................................................................................................................................................	29	10	0.20	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAG..............................................................................................................................................................................................	21	15	0.20	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TAAAAGCTAGAAGGTTGAG................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAA...............................................................................................................................................................................................	20	16	0.19	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
.............................................................................................................................TCGTTGAAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	25	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.................................................................................................................................TGAAAA-------GTATGTAACAGGCAAAAGG.................................................................................................................................................................................................	25	13	0.15	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAATC.......................................................................................................................................	27	13	0.15	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAGGTTGAGATTC............	25	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................AAGTATATATATTCTTGATCAGGA.....................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGA..........................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAAT........................................................................................................................................	25	15	0.13	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAAT........................................................................................................................................	26	15	0.13	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGAAGC.............................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................TGAAAA-------GTATGTAACAGGCAAAAGGAA...............................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTATATATATTCTTGATCAGGA.....................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAAGCTAGAAGGTTGAGATTCAG..........	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTA...............................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................TTCGTTGAAAA-------GTATGTAACAGGCAAAA...................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TCGTTGAAAA-------GTATGTAACAGGCA......................................................................................................................................................................................................	24	20	0.10	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCTAGCC----------ATGTCCGTC...........................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................ATGTAACAGGCAAAAGGAAGCGT...........................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAAGGTTGAGATT.............	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................AACAGGCAAAAGGAAGCGT...........................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................ACCAGATTCGTTGAAAA-------G...................................................................................................................................................................................................................	18	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAA-------GTATGTAACAGGCAAAAGGAAG..............................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAGGAAGCGG...........................................................................................................................................................................................	24	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................ATTCGTTGAAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGAAT........................................................................................................................................	29	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................ATGTAACAGGCAAAAGGAA...............................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ATCAGGATCAATAGCCGAATC.......................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAG..................................................................................................................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAAGGAAT..............................................................................................................................................................................................	26	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................TGAAAA-------GTATGTAACAGGCAA.....................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GATTCAGCATACAGAT-	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCTAGCC----------ATGTCCGTCT--------G----------------------------TCCGTA...............................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ACAGGCAAAAGGAAGCGC...........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGGATCAAT................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGCC----------ATGTCCGTCT--------G----------------------------.....................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC...................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGGATCAATA...............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................AAAA-------GTATGTAACAGGCAAAA...................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAAGGTTGAGATTCAGCATACAGA..	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TAACAGGCAAAAGGAA...............................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAGGTTGAGATTCAGC.........	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TAAAAGCTAGAAGGTTGAGA...............	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................GTTGAAAA-------GTATGTAACAGGCA......................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATATATATTCTTGATCAGGATCAA.................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATAAAAGCTAGAAGGTT...................	17	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAAGCTAGAAGGTTGAGATTC............	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AAGCTAGAAGGTTGAGA...............	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TATGTAACAGGCAAAAG..................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAAGGTTGAGATTCAG..........	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAAGGTTGAGATTCAGCATACAGAT-	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

dm3

GC------------------GGAG---AT------GG-----CTCACGCTTC----------------AGCTGGT---------------TTACTCG---TAG-AGTA-AAACGGTATACTACATTCGTTGAAAA-------GTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATT-AAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGTC----------ATGTCCGTCT--------G----------------------------TCCGAATGAACGT----CAAGATCTTAGGAGCTATAAAAGCCAAAGGGTTGACAT-CAGCATACAGAT-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................TCGTTGAAAA-------GTATGTAACAGGCAGA....................................................................................................................................................................................................	26	20	6.25	125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	7	2	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	4	6	0	0	0	0	0	0
...................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTC.......................................................................................................................................	24	20	4.10	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0
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.................................................................................................................................................................................................................TAGCCGAGTCGATCTGGTC----------ATGTCC..............................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCGATCTGGTC----------ATGTCCGTCT--------..................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCTGGTC----------ATGTCCGTCT--------G----------------------------T....................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TACATTCGTTGAAAA-------GTATGT..............................................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGTCGATCTGGTC----------ATGTCCGTC...........................................................................................................	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CCTTT-GCGG---C---GGC---GATAAT------GG-----C------GGTTCCGGCCCTCTTCTTGACGTTTTTATACC-------TGTTACTTG---TAG-AATA-AAAGGGTATATTAGATTCGTTGAAAA-------GTATGTAACAATTAGAAGGAAGCGTTTCCGACTCTATA-AAGTATATATATTCTTGATCAGGATCATTAGCGAAAACGATTGAGCC----------ATGTCCGTCT--------G----------------------------TCCGTATGAACGC----TGAGATCTCAGGAACTATAAGAGATTCAAAGTTCAGATTAAGCATGAAGAT-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGTT---------------------------------------------------------------GGGTTTTTAAACC-------TGTTACTCG---TAG-AGTA-AAAGGGTATACCAAATTCGTCGGAAA-------GTATGCAACAGGTAGAAGAAAACGTATCTGACCCCATA-AAGTATATATATTCTTGATCAGGATCACAAGCCGAGTCGATCTAGCC----------ATGTTCGTCT--------GTCTG--------------------TCTGTCCGTATGAACAC----TGAGATCTCAGAAGCTATAAGAGCTAGAACAGTAACACTTGACATGTAGAT-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TT---AGTTG---TTGTGAC---G---AT------GGGTCGTCACAC---------------------GGTTTTTTATACC-------CGTTACTCG---TAG-AGTA-AAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAATAGCTAGAAGGATGCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GT------------------------CCGTCTGTATGAACGC----TGAGATCTCAGAAACTACAAAAGCTAGAAGGTTGAGATTTTCCACACATAT-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------------------------------------------------------------------------------------------------------------AAGGGTATATTGAATTCGTTGAAAA-------GTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATA-AAGTATATATACTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCTG--------------------TCCGTCTGTATGAACGT----CGAGATCTCGGAAACTATAAAAGCTAGAGATTTGGAACTTGGCATGCAGAT-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGTT----G---TCGCAGC---G---AG------TG-----C------A------------------ACGTTTTTATACC-------CGTTACTCG---TAG-AGTA-AAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATA-AAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCTGTCTGTCTGTCTGTCTTTCTGTCCGTATGAACGC----TGAGATCTCGGAAACTATAAAAGCTACAAGATTGGCATTTTGCATGTAGAT-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--------------------------------------------------------------------------------------------------------------AAGGGTATACTGCATTTGTTGAAAA-------GAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATA-GAGAATTTATATTTTTGATCAGAATCATAGGACGACTCGATCTATGTCTGTACCTTTTTGTATG------------------------------------TCCGTCCTTATTAACCT----CGAAATCTCGAGAACATTTAGATTTAGAATATTAGGATTAAATATTTAAAT-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GC---TGGTG---C------GGCA-CCGGCGCAGCAC--CGGCGCGGCCTTC------------GGTGATATTATTATACC-------C-----------------TT-GCAGGGTATTATAATTTCAGTCAGAA-------GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATA-AAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCCGTCTGTCCG----TCCGTCTGTCCGTTTCTACGCAAACTAGTCCCTCA----GTTTTAAAGCTATCTGAATGAAACTTTGCATATAGTCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG---C--------------------CAT----------------GG---------------------GAATTTTTATACC-------C-----TTG---C--------AGAGGGTATTATAATTTTGGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATA-AAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGC----------ATGTCCGTCTGTC----CGTCTGTCC----G------------TCTGTCTGTTTCTACGCAAACTAGTCTCTCA----GTTTTAGAGCTATCGAGTTGAAACTTTGCACACA----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................TAATTTTGGTCAAAA-------GTGTGCAACGC.........................................................................................................................................................................................................	26	20	0.45	9	0	9	0	0	0	0
.........................................................................................................................................................................................................................TCGATATGAGC----------ATGTCCGTCTGTC----CGT................................................................................................	27	20	0.45	9	0	9	0	0	0	0
...................................................................................................................................AAAA-------GTGTGCAACGCAGTGAAGGAGAC.............................................................................................................................................................................................	27	20	0.30	6	0	6	0	0	0	0
...............................................................................................................................GGTCAAAA-------GTGTGCAACGCAG.......................................................................................................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
.................................................................................................................................................TGCAACGCAGTGAAGGAGACATCTCCG......................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	3	0
...............................................................................................................................................................................................................................................TGTCCGTCTGTC----CGTCTGTC...........................................................................................	20	20	0.15	3	3	0	0	0	0	0
...................................................................................................................................AAAA-------GTGTGCAACGCAGT......................................................................................................................................................................................................	18	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................CGATATGAGC----------ATGTCCGTC...........................................................................................................	19	20	0.15	3	0	0	0	0	3	0
.............................................................................................................................TTGGTCAAAA-------GTGTGCAACGCAGTGA....................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	2
........................................................................................................................TAATTTTGGTCAAAA-------GTGTGCAAC...........................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0
........................................................................................C-----TTG---C--------AGAGGGTATTATAATTTTGGTCA..............................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................ATATGAGC----------ATGTCCGTCTGTC----CGT................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................AGC----------ATGTCCGTCTGTC----CGTC...............................................................................................	20	20	0.10	2	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................TCA----GTTTTAGAGCTATCGAGTTGAAAC..............	27	20	0.10	2	0	2	0	0	0	0
.....................................................................AATTTTTATACC-------C-----TTG---C--------AGAGG................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ATCGAGTTGAAACTTTGCACAC.....	22	20	0.05	1	1	0	0	0	0	0
............................................................................................................................TTTGGTCAAAA-------GTGTGCAACGCAGTGA....................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................TTATAATTTTGGTCAAAA-------GTGTG...............................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................CACCTCCTGAGTCGATATGAGC----------A...................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................A-------GTGTGCAACGCAGTGAAGGAGA..............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................AAAA-------GTGTGCAACGCAGTGAAGGA................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................ATTTTGGTCAAAA-------GTGTGCAACGCAGT......................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
................................................................................................G---C--------AGAGGGTATTATAATTTTGGTC...............................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................TGTCCGTCTGTC----CGTCTGTCC----G------------TCTGTCT..................................................................	29	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................GAGC----------ATGTCCGTCTGTC----CGTCT..............................................................................................	22	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CCGTCTGTC----CGTCTGTCC----G------------TCTG.....................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

CAACT----G---CTATAGCGGCA---TC------A--------------------------------GCATCATTATACC-------C-----TTG---C--------AGAGGGTATTATAATTTTGTCCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATA-AAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGC----------ATGTCCGTCT--------GTCCGTC--------------------TGTCTGTTTCTACGCAAACTAGTCTCTCA----GTTTTAAAGCTATCGTCTTGAAACTTTGCACACA----	Size	Hit Count	Total Norm	Total
No Reads

dp5

GG---C--------------GGCA---AC------GA-----CTG-----------------------TCGTTTTTATACC-------CGATACTCAAAAT-G-AGTA-TTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC----------ATGTCTGTCT--------GT------------------------CCGTCCCCTTCAGCGC----CTAATGCTCAAAGACTATAAGAGCTAGAGCAACGATGTTTTGGATCCAGAC-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................AAGACTATAAGAGCTAGAGC......................	20	20	31.45	629	0	0	0	0	0	0	0	629	0	0
............................................................................................................................TTTGTGGTGAAAATGGATGTGTGT..............................................................................................................................................................................................................	24	20	26.25	525	0	424	0	0	0	0	64	0	37	0
............................................................................................................................TTTGTGGTGAAAATGGATGTGTG...............................................................................................................................................................................................................	23	20	8.75	175	0	0	10	0	0	0	0	0	165	0
............................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA-.............................................................................................................................................................................	24	20	5.65	113	0	113	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT........................................................................................................................................	23	20	3.25	65	0	0	65	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCAACGATG...............	28	20	2.85	57	0	57	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCAAC...................	24	20	2.85	57	0	0	0	0	0	0	0	0	57	0
............................................................................................................................TTTGTGGTGAAAATGGATGTGT................................................................................................................................................................................................................	22	20	2.80	56	0	0	0	0	0	0	0	56	0	0
........................................................................................................................................................................................................................................................................................................................AAGACTATAAGAGCTAGAGCAACGATG...............	27	20	2.60	52	3	0	0	0	0	0	49	0	0	0
......................................................................................................................................................................................................................................................................................................................CAAAGACTATAAGAGCTAGAGC......................	22	20	2.35	47	0	47	0	0	0	0	0	0	0	0
.............................................................................................................................TTGTGGTGAAAATGGATGTGT................................................................................................................................................................................................................	21	20	2.30	46	0	46	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCAA....................	23	20	2.15	43	0	0	0	0	0	0	0	43	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGC......................	21	20	1.45	29	0	29	0	0	0	0	0	0	0	0
................................................................................................................................................GTGTAACGTCCAGAAGGAATC.............................................................................................................................................................................................	21	20	1.10	22	0	21	0	0	0	0	1	0	0	0
............................................................................................................................................ATGTGTGTAACGTCCAGAAGG.................................................................................................................................................................................................	21	20	1.00	20	0	20	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AAGACTATAAGAGCTAGAG.......................	19	20	0.85	17	0	0	0	0	0	0	0	17	0	0
..........................................................................................................................................................................................................GCATCAATAGCCGAGTCGATT...................................................................................................................................	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AATGCTCAAAGACTATAAGA..............................	20	20	0.50	10	0	0	0	0	0	0	0	3	7	0
.............................................................................................................................TTGTGGTGAAAATGGATGTGTG...............................................................................................................................................................................................................	22	20	0.35	7	0	0	0	0	0	0	0	7	0	0
..........................................................................................................................GATTTGTGGTGAAAATGGATG...................................................................................................................................................................................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TATTCTTGATCAGCATCAATA...............................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AATGCTCAAAGACTATAAG...............................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAAC...........................................................................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.........................................................................................................................................TGGATGTGTGTAACGTCCAGA....................................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTTGATCAGCATCAATAGCCG...........................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	5	0	0	0
..............................................................................................................................TGTGGTGAAAATGGATGTGTGTAA............................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	4	1	0	0
.............................................................................................................................................................................................................................................................................................................................................ACGATGTTTTGGATCCAG...	18	20	0.25	5	0	0	0	0	0	0	0	0	5	0
..............................................................................................................................................................................................................................................................................................................................ATAAGAGCTAGAGCAACGATGTTT............	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................................GAATCGTTTCCGACCCCATA-AAGTA........................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCAACGC.................	26	20	0.25	5	0	0	0	0	0	0	0	0	5	0
..............................................................................................................................................................................................................................................................................................................................ATAAGAGCTAGAGCAACG..................	18	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................ATGTGTGTAACGTCCAGAAG..................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................GTCCAGAAGGAATCGTTTCCG......................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	5	0	0	0
........................................................................................................................................................................................................................GTCGATTGAGCC----------ATGTCTG.............................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TGCTCAAAGACTATAAGAGCT...........................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TTCAGCGC----CTAATGCTCAAAG.......................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TAGCCGAGTCGATTGAGC...............................................................................................................................	18	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGAGCC----------ATGTCTGTCT--------GT------------------------CCGTC...................................................................	23	20	0.20	4	0	0	4	0	0	0	0	0	0	0
..........................................................................................................................................................CAGAAGGAATCGTTTCCGACCCC.................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................TGGTGAAAATGGATGTGTGT..............................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................AAAT-G-AGTA-TTGGGGTATATT.........................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
..........................................................................................................................................................................................................................................................................................................................GACTATAAGAGCTAGAGCA.....................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTCTGTCT--------GT------------------------CCGTCCCCTTCAG...........................................................	24	20	0.15	3	0	0	0	0	1	0	0	1	1	0
..............................................................................................................................TGTGGTGAAAATGGATGTGTGTAACG..........................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	3	0	0	0
............................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAACG..........................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGCAACGATGTTTTGGATCCAG...	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TAATGCTCAAAGACTATAAG...............................	20	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................AT-G-AGTA-TTGGGGTATATTAG.......................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	3	0
..........................................................................................................................................................................................................GCATCAATAGCCGAGTCGA.....................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATTCTTGATCAGCATCAATAGC.............................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..............................................................................................................................TGTGGTGAAAATGGATGTGTGT..............................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	3	0
...................................................................................................................................................................................................................................................TGTCT--------GT------------------------CCGTCCCCTTCAGC..........................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TGGTGAAAATGGATGTGTG...............................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................TGTGGTGAAAATGGATGT..................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................AGGAATCGTTTCCGACCCCATA-.............................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG...........................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGCAACGATGTTTTGGA........	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCTAGAGCAACGATGTTTTGGA........	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAAAGACTATAAGAGCTAGAGCAACG..................	26	20	0.10	2	0	0	0	0	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATGCTCAAAGACTATAAGAG.............................	20	20	0.10	2	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGT........................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0
............................................................................................ACTCAAAAT-G-AGTA-TTGGGGTAT............................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................TACC-------CGATACTCAAAAT-G-AG........................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATAAGAGCTAGAGCAACGATGTTTTG..........	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0
................................................................................................................................................................GAATCGTTTCCGACCCCATA-AAGT.........................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................TGTGGTGAAAATGGATGTGTGTAACGT.........................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCAACGATGTTTTGG.........	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCATCAAT................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCCCTTCAGCGC----CTAATGCTCA..........................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................C----------ATGTCTGTCT--------GT------------------------CCGTCCC.................................................................	20	20	0.10	2	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AAGACTATAAGAGCTAGAGCAACGAT................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................TAGATTTGTGGTGAAAATGG......................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................TCAAAGACTATAAGAGCTAGAGCA.....................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................GACTATAAGAGCTAGAGCAACGATG...............	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................TATTAGATTTGTGGTGAAAAT........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGA........................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAG.........................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................GGGGTATATTAGATTTGTGGTGAA...........................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAACGATGTTTTGGATCCAGAC-	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................ATTTGTGGTGAAAATGGATGTG.................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAGAGCTAGAGCAACGAT................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................CTGTCT--------GT------------------------CCGTCCCCTTCAGCGC----AA..................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................C----------ATGTCTGTCT--------GT------------------------CCGTCC..................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTTCCGACCCCATA-AAGTATATAT...................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAAAGACTATAAGAGCTAGAGCAACGAT................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCCATA-.............................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CCGACCCCATA-AAGTATATA....................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATGCTCAAAGACTATAAGA..............................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................TTGTGGTGAAAATGGATGTGTGTA.............................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................................................CGTTTTTATACC-------CGATACTCAAAAT-G-A.........................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GCGC----CTAATGCTCAAAGACTATAAGAG.............................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCTAGAGCAACGATGTTTT...........	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................AAAATGGATGTGTGTAACGTC........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGAGTCGATTGAGCC----------ATGTCTG.............................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................TTAGATTTGTGGTGAAAATGGATG...................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCCA................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................GTGGTGAAAATGGATGTGTG...............................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCTAGAGCAACGATGTTTTGGATCC.....	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................GTATATTAGATTTGTGGTGAA...........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................TCTGTCT--------GT------------------------CCGTCCCCTTCA............................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................TCAAAAT-G-AGTA-TTGGGGTATATT.........................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATAAGAGCTAGAGCAACGATGTT.............	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AATGCTCAAAGACTATAAGAA.............................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................TAGATTTGTGGTGAAAATGGATG...................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CCCTTCAGCGC----CTAATGCTCA..........................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TTAGATTTGTGGTGAAAATGGAT....................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................GCCGAGTCGATTGAGCC----------ATGTCTG.............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGCAACGATGTTTTGG.........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGCC----------ATGTC...............................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AAGACTATAAGAGCTAGA........................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................AAGTATATATATTCTTGATCA........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................GTCCCCTTCAGCGC----CTAATGC.............................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CGC----CTAATGCTCAAAGACTA...................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TAGATTTGTGGTGAAAATGGATGT..................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTCTGTCT--------GT------------------------CCGTCCCC................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTCCGAC....................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TCAAAGACTATAAGAGCTAGA........................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................CCGAGTCGATTGAGCC----------ATGTCTGTC...........................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GTCT--------GT------------------------CCGTCCCCTTCA............................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CTAGAGCAACGATGTTTTGG.........	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................TGTGGTGAAAATGGATGTGTGTAAC...........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................ACGTCCAGAAGGAATCGTTTCC.......................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................TCAGCATCAATAGCCGAGT........................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGAGCC----------ATGTCTGTCT--------GT------------------------CCGTCCC.................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................CCCCTTCAGCGC----CTAATGCTA...........................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CACCT----G---TAGTAGC---AGTAGT------GG-----TATGGGCT------------------AAATTATTATACC-------CGATACTCAAAAT-G-AGTA-TTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATA-AAGTATATATATTCTTGATCAGCATCAATAGCCGAGCCGATT-----------------GTCCGTCCGTCTGTCCGTCCGTCC----G--------TCTGTCCGTCCCCTTCAGCGC----CTAGTGCTCAAAGACTATAAGAGCTAGAGCAACGATATTTTGGATCCAGACT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCA.....................	22	20	4.15	83	0	83	0	0	0	0
.............TAGTAGC---AGTAGT------GG-----TATGGGCT------------------A.............................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	2
...........................................................................................................................ATTTGTGGTAAAAGTGGA.....................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCTAGAGCAACGATATTTTGG.........	21	20	0.10	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................AAAGACTATAAGAGCTAGAGCAACGATA...............	28	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGC........................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................CAGCATCAATAGCCGAGCCG......................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

TT---CGTTG---C------GGT-----------------------------------------------GTTGTCGTCTC-------TGTCGCTCT---TGT-GGGT-GAATGGTATATTAAAGTCGCCAAAAT-------GTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACA-AAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCC----------ATGTCCGTCT--------GTCCGTCCTTCCG------------TCCGTCTGTATGAACAC----GCAGATCTCGGAGACTATAAGAGCTAGAGCCATCAAATTTGGTATGCAGAC-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................TCTAGCC----------ATGTCCGTCT--------GTCCGTCCTT........................................................................................	27	5	0.40	2	0	1	0	1	0
..........................................................................................................................AAGTCGCCAAAAT-------GTATGTAACAGG........................................................................................................................................................................................................	25	20	0.20	4	0	0	0	4	0
.............................................................................................................GAATGGTATATTAAAGTCGCC................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	1	0
....................................................................................................................................AAT-------GTATGTAACAGGCAGAAG..................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
..................................................................................................................................AAAAT-------GTATGTAACAGGCAGAAGGA................................................................................................................................................................................................	25	20	0.15	3	0	0	0	3	0
................................................................................................................................................................................................................................................GTCCGTCT--------GTCCGTCCTTCCG------------.........................................................................	21	8	0.13	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................GCAGATCTCGGAGACTATAAGAGCTAG.........................	27	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................CAACAACCGAGTCGATCTAGC...............................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGGATCAACAACCGAG.........................................................................................................................................	29	20	0.05	1	0	1	0	0	0
.............................................................................................................................TCGCCAAAAT-------GTATGTAAC...........................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................TATGAACAC----GCAGATCTCGGAGACT....................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AAGAGCTAGAGCCATCAAATTTGG..........	24	20	0.05	1	0	0	0	1	0
.....................................................................................................................TATTAAAGTCGCCAAAAT-------GTATGTAA............................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................GTATGAACAC----GCAGATCTCGGAGA......................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AAGAGCTAGAGCCATCAAATTTGGTA........	26	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................AGCATCTCCGACCCCACA-AAG..........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................GACTATAAGAGCTAGAGCC.....................	19	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................TAAGAGCTAGAGCCATCAAATTTGG..........	25	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................TAGCC----------ATGTCCGTCT--------GTCCGTCCTTG.......................................................................................	26	20	0.05	1	0	0	0	1	0

droVir3

GA---C--------------AGCG---AC------GG-----CACACGTATT-----------------TGTCTTTATTCCCTGAACCCATTAAAAG---T-G-GGTA-TGAGGATATATTGTATTTTTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATA-AAGTATATATATTCTTGATCAGCACCAATAGCCGAGTCGATCTAGCC----------ATGTCCGTCCGTC----TGTCTGTCC----G--------TCTGTCCGTATGTATGAACGC----AAGGACCTGAGAACCTATAAGAGCTAGAGACTTGAAATTTTAGATGTAGGT-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTAGG..	24	20	2.05	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTAGGT-	25	20	1.70	34	0	0	0	0	0	0	0	0	0	29	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGTAGGT-	27	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGA................................................................................................................................................................................................	27	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAATAGCC............................................................................................................................................	25	20	0.75	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	5	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................GTATGTAACAGGCAGAAGGAAG..............................................................................................................................................................................................	22	20	0.60	12	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ACTTGAAATTTTAGATGTAGGT-	22	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TCCAAATGTATGTAACAGGCAGAA...................................................................................................................................................................................................	24	20	0.45	9	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCACCAATAG..............................................................................................................................................	24	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCCGA..........................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CAAATGTATGTAACAGGCAGAAGG.................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCCGAGTC.......................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCACCAATAGCC............................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCCGAG.........................................................................................................................................	25	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATG......	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTATGTAACAGGCAGAAGGAAG..............................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
...............................................................................................................................................TATGTAACAGGCAGAAGGAAGCATC..........................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTATGTAACAGGCAGAAGG.................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTATATATATTCTTGATCAGC......................................................................................................................................................	21	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TCCAAATGTATGTAACAGGCAGA....................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAATAGC.............................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CTAGAGACTTGAAATTTTAGATGT.....	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TCCAAATGTATGTAACAGGCAG.....................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACCTATAAGAGCTAGAGACTTGAAATT.............	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTATGTAACAGGCAGAAGGAAGCAT...........................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CCGTATGTATGAACGC----AAGGACCT............................................	24	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTCCG......................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................AGGCAGAAGGAAGCATCTCCGACCC..................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGACTTGAAATTTTAGATGT.....	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTCCGAC....................................................................................................................................................................................	30	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
............................................................................................................................................................................................................................ATCTAGCC----------ATGTCCGTCCGTC----...................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCCG...........................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAGACTTGAAATTTTAGATGTAG...	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCC............................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAATAGCCGAG.........................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGACTTGAA................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGATCAGCACCAATAGCCGAG.........................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTATGTAACAGGCAGAAGGAAGCA............................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGCCGAGT........................................................................................................................................	26	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGACTTGAAATTTTAGATGTAGG..	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCACCAATAGCCGAG.........................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCACCAATAGCCGAGTC.......................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAAT................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCAGCACCAATAGCCGAGTCG......................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TTTATTCCCTGAACCCATTAAA...................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CGATCTAGCC----------ATGTCCGTCC..........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCACCAATAGCCGAGTCG......................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATATATATTCTTGATCAGCAC....................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTTGATCAGCACCAATAGC.............................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GAGCTAGAGACTTGAAATTTTAGATGT.....	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCATC..........................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATA-AAGTATATATATTCTTGATCAGCA.....................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCAGCACCAATAGCCGAGTCGATCTAG................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................ATCCAAATGTATGTAACAGGCAGAAGG.................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TATATATTCTTGATCAGCACC...................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGATCAGCACCAATAGCCGAGTCGATC...................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AAGGAAGCATCTCCGACCCC.................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TGTCC----G--------TCTGTCCGTATGT................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCACCAATAGCCG...........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCGATCTAGCC----------ATGTCCGTCCGTC----TG.................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGTAGG..	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TAAGAGCTAGAGACTTGAAATTTTAGA........	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GTCGATCTAGCC----------ATGTCCG.............................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................TCTGTCCGTATGTATGAACGC----AAGGA...............................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGTCGATCTAGCC----------ATGTCCG.............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGTCGATCTAGCC----------ATGTCCGTC...........................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CGATCTAGCC----------ATGTCCGTC...........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AGGCAGAAGGAAGCATCTCCGACC...................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCACCAATAGCCGA..........................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAATAGCCGA..........................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GAGCTAGAGACTTGAAATTTTAGATG......	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGATCAGCACCAATAGCCGAGTCGAT....................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTATGTAACAGGCAGAAGGAA...............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................AGAGACTTGAAATTTTAGATGTAGG..	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGATCAGCACCAATAGCCGAGTCGA.....................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CAGCACCAATAGCCGAGTCGA.....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CACCAATAGCCGAGTCGATCT..................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATATTCTTGATCAGCACCAATAGCCG...........................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCCGAGTCGATCTAGCC----------ATGTC...............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TATATTGTATTTTTGCAAAAT..........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AGCACCAATAGCCGAGTCGATC...................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCTAGAGACTTGAAATTTTAGATGTAGGT-	29	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGTCCGTATGTATGAACGC----A...................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ACCAATAGCCGAGTCGATCTAGCC----------A...................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTTGATCAGCACCAATAGC.............................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGACTTGAAATTT............	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTTGATCAGCACCAATAGC.............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CCAATAGCCGAGTCGATCTAG................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AACAGGCAGAAGGAAGCAT...........................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATGTATGTAACAGGCAGAAGGAAG..............................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGCC----------ATGTCCGTCCGTC----TGT................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GTCGATCTAGCC----------ATGTCCGTCCGT........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGA........	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AGGCAGAAGGAAGCATCTCCG......................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AACAGGCAGAAGGAAGCATC..........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAGATGTAG...	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CAGGCAGAAGGAAGCATCTCCGACCC..................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................AAATCCAAATGTATGTAACAGGCAGAA...................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CAAATGTATGTAACAGGCAGAAGGAAG..............................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CACCAATAGCCGAGTCGATCTAG................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CACCAATAGCCGAGTCGATCTAGCC----------....................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAGAGCTAGAGACTTGAAA...............	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAAGGAAGCATCTCCGACC...................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGACTTGAAATTTTAG.........	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGACTTGAAATTTTAGAT.......	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATATATTCTTGATCAGCACCAATAGCC............................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGACTTGAAATTTTAGATGTAGGT-	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATTCTTGATCAGCACCAATA...............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTTGATCAGCACCAATAGCCGA..........................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATAAGAGCTAGAGACTTGAAAT..............	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TT---GATTG---C---------G---AC------GG-----TGTGGGCTCC----------------ATATTTTTATACCCTGAACCCATTGAAAA---T-G-GGAAGTCAGGGTATAATGGTTTTAT-GAAAA-------GCATGTAATAAGCAGAGGGAATCATTGCAGACCCCATG-AAGTGTA-ATATTCCTGCTCATGGCGACGAGCTGAGTCTATATAGCC----------CTGTCCGTCC--------G----------------------------TCCGTATAATCAC----GTCGATCTCAGAAGA--TATGAGCTAGAGAGCTGAAATTTTGCATGCA----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................ACCCCATG-AAGTGTA-ATATTCCT.............................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................GGAATCATTGCAGACCCCATG-.............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................GTA-ATATTCCTGCTCATGGCG...................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................CAGAGGGAATCATTGCAGACC...................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................TCCGTCC--------G----------------------------TCCGTATAATCAC----....................................................	21	1	1.00	1	0	0	0	0	1	0
....................................................................................................T-G-GGAAGTCAGGGTATAATGGTTT....................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................TGAGTCTATATAGCC----------CTGTCC..............................................................................................................	21	7	0.14	1	0	0	0	1	0	0
............................................................................................GAAAA---T-G-GGAAGTCAGGGTATAATGG.......................................................................................................................................................................................................................................	26	19	0.11	2	1	0	0	0	0	1
..........................................................................................TTGAAAA---T-G-GGAAGTCAGGGTATA...........................................................................................................................................................................................................................................	24	17	0.06	1	1	0	0	0	0	0
....................................................................................AACCCATTGAAAA---T-G-GGAAGTCAGG................................................................................................................................................................................................................................................	25	17	0.06	1	1	0	0	0	0	0
............................................................................................GAAAA---T-G-GGAAGTCAGGGTATAATGGT......................................................................................................................................................................................................................................	27	18	0.06	1	0	0	0	0	0	1
.......................................................................................CCATTGAAAA---T-G-GGAAGTCAGGGT..............................................................................................................................................................................................................................................	24	18	0.06	1	1	0	0	0	0	0
....................................................................................................T-G-GGAAGTCAGGGTATAATGGTTTT...................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................AAAA---T-G-GGAAGTCAGGGTA.............................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
..............................................................................................AAA---T-G-GGAAGTCAGGGTATAATGG.......................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................T-G-GGAAGTCAGGGTATAATGGT......................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droGri2

TT---CGCCG---TGGTTGC---A---AT------TG-----C------CTC----------------AATTTCTTGAATC-------CATTAAAAA---T-G-GGTAAAAAGGGTATAATGGTTTTGTGCAAAT-------GTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAAGTATATATATTGTTGATCAGGATCAACGGCGGAATCGATATAGCC----------ATGTCCGTCT--------GTC------------------------------------------------TCTCAGAGACTATAAGAGCTAGAGA---CAAATTTGGAATATAGGT-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................ATGTAACAGGCAGAAGGAAGC.............................................................................................................................................................................................	21	20	0.05	1	1	0

dya_342

2L:16396603-16396753 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.3	-24.2	-24.1