ID:

dya_31

 Coordinate:

2R:16191858-16191916 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.9 -25.7 -25.7

Flybase annnotation

utr3 [utr3_minus_3347]

No Repeatable elements found

Sense Strand Reads

CGCAGCTTCCAAGACGGTTTCGTGGGAAACTGGCGAATCTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGTTTCGGTGCCATTTCACCCCGAACAGCAAGACCATCAGACTATAGAATTTACCATAAATAAA

***********************************...(((.((...((....(((((..((((((((((((...........))))))))..))))...))))).....)).....)).))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M026

head

 M056

embryo

 V058

head

 V052

head

 M043

female body

 V046

embryo

 V120

male body
..................................................ATTCACCGTTCTGAGTTGGCC........................................................................................ 21 0 1 508.00 508 467 8 13 16 3 0 1
..................................................ATTCACCGTTCTGAGTTGGCCC....................................................................................... 22 0 1 424.00 424 269 106 19 8 14 8 0
..................................................ATTCACCGTTCTGAGTTGGC......................................................................................... 20 0 1 267.00 267 193 1 41 23 6 2 1
..................................................ATTCACCGTTCTGAGTTGG.......................................................................................... 19 0 1 32.00 32 8 0 18 3 2 0 1
..................................................ATTCACCGTTCTGAGTTGGCCCT...................................................................................... 23 1 1 21.00 21 16 0 0 0 5 0 0
..................................................AGTCACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 14.00 14 0 14 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGAC........................................................................................ 21 1 1 11.00 11 10 1 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGAC......................................................................................... 20 1 1 7.00 7 7 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGTTTCGGTGCCAT.................................................. 24 0 1 6.00 6 0 4 0 0 1 1 0
..................................................ATTTACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 6.00 6 0 6 0 0 0 0 0
..................................................AGTTACCGTTCTGAGTTGGCCC....................................................................................... 22 2 1 6.00 6 0 6 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCC...................................................................................... 23 0 1 5.00 5 4 1 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGCC........................................................................................ 21 1 1 5.00 5 5 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGTTTCGGTGCCA................................................... 23 0 1 5.00 5 0 0 0 0 0 5 0
..................................................ATTCACCGCTCTGAGTTGGCC........................................................................................ 21 1 1 5.00 5 4 1 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 5.00 5 2 3 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCTT..................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCA...................................................................................... 23 1 1 4.00 4 2 0 1 0 0 1 0
..................................................ATTCACCGTTCTGAGTTGGCCA....................................................................................... 22 1 1 4.00 4 1 1 0 0 2 0 0
..................................................ATTCACCGTTCTGATTTGGC......................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0
.....................................................CACCGTTCTGAGTTGGCCC....................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGG......................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGC......................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0
..................................................ATTCACCGGTCTGAGTTGGC......................................................................................... 20 1 1 3.00 3 1 0 1 0 1 0 0
..................................................ATTCACCGTTCTGAGTTGCCC........................................................................................ 21 1 1 2.00 2 1 0 1 0 0 0 0
.....................................................................................GCAAGCTTTCAGTTTCGGTGCCAT.................................................. 24 1 1 2.00 2 0 2 0 0 0 0 0
...................................................TTCACCGTTCTGAGTTGGCCC....................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTCGGC......................................................................................... 20 1 1 2.00 2 0 0 2 0 0 0 0
..................................................ATCCACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
..................................................ATTCACCGATCTGAGTTGGCCC....................................................................................... 22 1 1 2.00 2 0 0 0 0 2 0 0
.....................................................................................GCCAGCTTTCAGTTTCGGTGC..................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0
..................................................ATTCACTGTTCTGAGTTGGCCC....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCG...................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
..................................................ACTCACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCTT...................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCT........................................................................................ 21 1 1 2.00 2 1 0 1 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCT....................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGCC........................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCA........................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCTTTCTGAGTTGGAC........................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGATCGC......................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGCGTTGGCC........................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGCTCTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
..................................................ATTCACCGTTCCGAGCTGGCCC....................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCTA...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCTC..................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
.................................................ATTTCACCGTTCTGATTTGGC......................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTACTGAGTTGGCAC....................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACAGTTCTGAGTTGGCCCT...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................AGTCATCGTTCTGAGTTGGCCC....................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................ATTCACCGTTCTGAGTTTGC......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTTACCGTTCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGGGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTCCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................AGCCACCGTTCTGAGTTGGCCC....................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCCGAGTTGGC......................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGAGTTGTC......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGTC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGCCTC...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGGTCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTTCTGGGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
......................................................ACCGTTCTGAGTTGGCC........................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTTCTGAGATGGCCCT...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCATCGTTCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTAAGTTGGCC........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATGCACCGTGCTGAGTTGGCCCA...................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCATTGTTCTGAGTTGGCCT....................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCTTTCTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GTTCACCGTTCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................GCAGCTTTCAGTTTCGGTGCCATTT................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0
..................................................ACTCACCGTTCTGAGTTGGC......................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGAGTTAGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCCGAGTTGGCC........................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCAC..................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACAGTTCTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0
..................................................ATTCACCGGTCTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
.......................GGGAAACTGGCGAATCTGCTCTGC................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................GCCACCTTTCAGTTTCGGTGCC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCG........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................ATTTCACCGTTCTGAGTTGGC......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................GCCTTCAGTTTCGGTGCCAT.................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGAGCTGTCCC....................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................GCCAGCTTTCAGTTTCGGTGCC.................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCAC....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATCCACCGTTCTGAGTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................AGTCACCGTTCTGAGTTGGCCCC...................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................AATCACCGTTCTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGCCTTGGCC........................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0
..................................................AGTTACCGTTCTGAGCTGGCCC....................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
..................................................ATCCACCGTTCTGAGTTGG.......................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCAACGTTCTGAGTTGG.......................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTTATGAGTTGGCTC....................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................ATTCACCGTTCTTAGTTGGC......................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................AGTCACCGTTCTGAGTTGTCCC....................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGATTTGGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ATTCACCGCTCTGAGTTGGC......................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGAGTTTGCC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGTCACCGTTCTGAGTTGGCCC....................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTGTGTTGGCC........................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................GCCAGCTTTCAGTTTCGGTGCCATT................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0
..................................................ATTCACCGGTCTGAGTGGCCC........................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTCACCGTACTGAGTTGGCCC....................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGTTCTTAGCTTGCC........................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0 0
.................................................CATTCACCGTTCTGAGTTGGAC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ATTCACCGGGCTGAGTTGGC......................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGCGTTGG.......................................................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0
.................................................ATTTGACCGTTCTGAGTTGGCC........................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
..................................................ATTCACCGCTCTGACTTGGCC........................................................................................ 21 2 2 0.50 1 0 0 1 0 0 0 0
..................................................ATTCACCGTCCGGAGTTGCC......................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0
....................................................TCATCTTTCTGAGTTGGCCC....................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0 0
..............CGGGTGCGTGGGAAACTGGCT............................................................................................................................ 21 3 5 0.20 1 0 0 1 0 0 0 0
..............CGGCTGCGTGGGTAACTGGC............................................................................................................................. 20 3 8 0.13 1 0 0 1 0 0 0 0
..................................................AGTCACCGTGCTGAGCTGGC......................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0
.........................................................GTTCTGAGTTGGGCTCACG................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0
..................................................ATGCACCGGTCTGAGTGGG.......................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0

Anti-sense strand reads

GCGTCGAAGGTTCTGCCAAAGCACCCTTTGACCGCTTAGACGAGACGCTGTAAGTGGCAAGACTCAACCGGGGTTCACGTGCACCCGGTCGAAAGTCAAAGCCACGGTAAAGTGGGGCTTGTCGTTCTGGTAGTCTGATATCTTAAATGGTATTTATTT

***********************************...(((.((...((....(((((..((((((((((((...........))))))))..))))...))))).....)).....)).))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total V046

embryo

 M056

embryo

 V058

head
TCGTCGTAGGTTCTGCCACAGC......................................................................................................................................... 22 3 1 1.00 1 1 0 0
............................................................................................................................TTCTAGCAGTCTGATATCT................ 19 2 2 0.50 1 0 1 0
..............................................................................................................................CTAGTAGCCTGACATCTTAA............. 20 3 5 0.20 1 0 1 0
..................................................TAAGTGGCAAGACGCA............................................................................................. 16 1 5 0.20 1 0 0 1
.............................................................................................................................TCTAGCAGTCTGACATCTT............... 19 3 19 0.05 1 0 1 0
..............................................................................................................................CTAGTAGTCTGACATCTTG.............. 19 3 20 0.05 1 0 1 0
.....................................................................................................CCGAGGTAAATTGGGGCTT....................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2R:16191808-16191966 + dya_31 confident CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-CACCCC-GAA---CAGCAAGAC-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AA
droEre2 scaffold_4845:13064838-13064995 + der_253 confident CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGTAAC-----------TG-G----CGAGTCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-CACCCC-CAG---CACCAAGAG-----------------------------------------------------------------------------CACC-GACTAT--A---GA---------ATTTACCATAAATA------AA
droSec2 scaffold_1:10286764-10286922 - dse_181 candidate-rescued CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------TATCAGACTAT--A---GA---------ATTTACCATAAATA------AA
droSim2 2r:13453475-13453633 - dsi_147 confident CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCAGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AA
dm3 chr2R:12782692-12782850 - dme-mir-990 Known_mirbase CGCAGCTTCCA------------------------AGTTGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AA
droEug1 scf7180000409672:2349831-2349990 + CGCAGCTTCCA------------------------TGATGG--TTTCGTGGGAAAC-----------TG-G----CGAAGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCG-ATTT-CAACCC-GAC---TACTAACAG-----------------------------------------------------------------------------C--CAGACTAT--T---GA----TATAAATTT--CATAAATA------AA
droBia1 scf7180000301506:2208135-2208291 - CGCAGCTTCCA------------------------CGAAGG--TTTCGTGGGAAAC-----------TG-G----CGATGCTGC------------TGTGC-GACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-AACCCCTGAA---CACCAAGAG-----------------------------------------------------------------------------C---AGCCCAT--A---GA---------GCATACCATAAATA------AA
droTak1 scf7180000415389:316898-317058 - CGCAGCTTCCA------------------------AAAAGG--TTTCGTGGGAAAC-----------TG-T----CGAAGCTGC------------CCTGC-GACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGAC-ATTT-CACCCC-GACAAACACCAAAGG-----------------------------------------------------------------------------C---AGACTATATA---GA---------ATATACCATAAATA------AA
droEle1 scf7180000491214:1580235-1580398 + CGCAGCTTCCA------------------------TGGCGG--TTTCGTGGGAAAC-----------TG-G----CGTTGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAGTTGCACGTGGG-CCAG----CC------------TTCAGTTTCGGTGCC-ATTTTCACCCC-GAG---TGCCAGGAG-----------------------------------------------------------------------------C---AGACTATATAGAAGAA---T----ATAAACCATAAATA------AC
droRho1 scf7180000780084:554969-555124 + CGCAGCTTCCA------------------------TTATGG--TTTCGTGGGAAAC-----------TG-G----CCAAGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTTTCACCCC-AAG---TGCCAGGAG-----------------------------------------------------------------------------C---AGACT-T--G---GA---------GTTAGCCATAAATA------AA
droFic1 scf7180000453948:2648174-2648354 + CGCAGCTTCCA------------------------TGATGG--TTTCGTGGGAAGC-----------TG-G----CGCTGCTGC------------CTGGC-GACATTCACCGTTCTGAGTTGGCCCCCGTTGCACGTGGG-CTGG----CC--------------CAGCTACGGTGCT-ATTA-AGCCTC--AG---CATCGAAGGCG-----GACCACCACTACC---------ACAAC---------------------------------------------TGAGACTAC--T---GAGTGCCACA-ATCTACCATAAATA------A-
droKik1 scf7180000302470:1199392-1199572 - CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TG-G----CGAAGCTGC------------TCTGC-GACATTCACCGTTCTGCGTTGGCCCCAAGTGCACGTGGG-CCAA----CT------------CTCAGTTACGGTGTA-ATAA-CA-----GTGCCACATCTTAGCCAGATTCCACCACATATAT-----------------------CGCCTCCTCCTCCCCCCGAA------------------CACACTAT---------------------------TATA------AA
droAna3 scaffold_13266:13815697-13815845 + dan_4059 CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TG-T----CGAAGCCAC------------TTTGC-GACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGG-GCCGACGACT------------CTCCGCTTCCGGACCCATTG-C------------------------------------------------------------CGAAAATACATTCTTC--------------------------------------------------------AAGAGAAATATACCAA
droBip1 scf7180000396759:2320912-2321056 - CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TTGGT---AGAAGCTGC---------TACTTTGC-GACATTCCCCGTTCTGCGTTGGCCAAAGGTGCACGTGGGGCCGA----CT------------TTCCGCTTCCGGACCTATTG-C------------------------------------------------------------CGAAAATATATCCTT------------------------------------------------------A--AAGAGAAA------AA
dp5 3:6727686-6727913 - CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAC-----------TG-G----CGAGGCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGT-------------T----------------------TCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACAAA--A---GT---------GTGA--CACAAAAA------TA
droPer2 scaffold_2:6950649-6950876 - CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAC-----------TG-G----CGAGGCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGT-------------T----------------------TCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACAAA--A---GT---------GTGA--CACAAAAA------TA
droWil2 scf2_1100000004513:6478759-6478883 - CGCAGCTTCCAACGAAAGGACGAACGAATGCCAAACGATGA--TTGCGTGGGAAATACATCTTCGTTTG-GCTTTAGTTTCTCT------------TCTGCGGACATTCAATGTTCTGCGTTTGCCCCAAGCGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:2573926-2574010 + CGCAGCTTCCAG-----------------------CGTTGG--TTGCGTGGGAAAC-----------TG------CGAAGCTGC------------TTTGC-GACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:22657688-22657772 - CGCAGCTTCCAG-----------------------CGCTGG--TTGCGTGGGAAAC------------G-G----CGAAGCTTC------------TGTGC-GACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:4702128-4702224 + CGCAGCTTCCAG-----------------------CGTTGGCTTTGCGTGGGAATT-----------TT-G----CGAAGCTGCTGCTGTGGCT--GCTGC-GACATTCAACGTTCTGCGTTGGCCGCCGACGCACGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-CACCCC-GAA---CAGCAAGAC-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................ATTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................211508.00508467380161310000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................221424.0042426914106881900000
.........................................................................................................ATTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................201267.00267193612234110000
.........................................................................................................ATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................19132.0032820031810000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCT..............................................................................................................................................................................................................23121.0021165000000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-AT........................................................................................................................................................2416.00601410000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCC..............................................................................................................................................................................................................2315.00540100000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-A.........................................................................................................................................................2315.00500050000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCTT.............................................................................................................................................................................................................2414.00440000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCA..............................................................................................................................................................................................................2314.00420010100000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCA...............................................................................................................................................................................................................2214.00412100000000
............................................................................................................CACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................1913.00330000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGG.................................................................................................................................................................................................................2013.00330000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2112.00220000000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGC............................................................................................................................................................2112.00200200000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCG..............................................................................................................................................................................................................2312.00220000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCG...............................................................................................................................................................................................................2212.00220000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCTT..............................................................................................................................................................................................................2312.00220000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCT................................................................................................................................................................................................................2112.00210000100000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCT...............................................................................................................................................................................................................2212.00210000100000
.........................................................................................................ATTCACCGTTCTGAGTTGGCA................................................................................................................................................................................................................2111.00100000100000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCTA..............................................................................................................................................................................................................2311.00110000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCTC.............................................................................................................................................................................................................2411.00110000000000
.............................................................................................................ACCGTTCTGAGTTGGCC................................................................................................................................................................................................................1711.00100000100000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCAC.............................................................................................................................................................................................................2411.00100000100000
.................................................GGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-........................................................................................................................................................................................................................................2411.00100100000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCG................................................................................................................................................................................................................2111.00110000000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-..........................................................................................................................................................2211.00100100000000
.........................................................................................................ATTCACCGTTCTGAGTTGGT.................................................................................................................................................................................................................2011.00110000000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-ATT.......................................................................................................................................................2511.00101000000000
droEre2
CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGTAAC-----------TG-G----CGAGTCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-CACCCC-CAG---CACCAAGAG-----------------------------------------------------------------------------CACC-GACTAT--A---GA---------ATTTACCATAAATA------AASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................ATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2211138.00113829615612269540
.........................................................................................................ATTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................211398.0039810829283410
.........................................................................................................ATTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................201280.0028041200112440
.........................................................................................................ATTCACCGTTCTGAGTTGGCCT...............................................................................................................................................................................................................22136.003600200340
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCT..............................................................................................................................................................................................................23130.003000202260
.........................................................................................................ATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................19125.002510406140
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-AT........................................................................................................................................................24120.00203224090
.........................................................................................................ATTCACCGTTCTGAGTTGGCCA...............................................................................................................................................................................................................22116.001600100150
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCA..............................................................................................................................................................................................................23111.00110010190
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-A.........................................................................................................................................................2318.0080004040
..........................................................................................................TTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2115.0050100040
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCC..............................................................................................................................................................................................................2314.0040000040
...........................................................................................................TCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2013.0030100020
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGT..............................................................................................................................................................1912.0020001010
.........................................................................................................ATTCACCGTTCTGAGTTGGA.................................................................................................................................................................................................................2012.0020000020
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-AC........................................................................................................................................................2411.0010000010
.........................................................................................................ATTCACCGTTCTGAGTTGGT.................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................TGGG-CCAG----CT------------TTCAGTTTCGGTG.............................................................................................................................................................2311.0010000010
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGG...............................................................................................................................................................1811.0010000010
..........................................................................................................TTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................2011.0011000000
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGC............................................................................................................................................................2111.0010000010
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-ATA.......................................................................................................................................................2511.0011000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCA................................................................................................................................................................................................................2111.0010000010
............................................................................................................................................G-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-.....................................................................................................................................................2611.0011000000
.........................................................................................................ATTCACCGTTCTGAGTTG...................................................................................................................................................................................................................1811.0010000010
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCG..............................................................................................................................................................................................................2311.0010000010
droSec2
CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------TATCAGACTAT--A---GA---------ATTTACCATAAATA------AASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................ATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................221385.0038543157221
.........................................................................................................ATTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................211148.001481415128
.........................................................................................................ATTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................201120.00120002118
.........................................................................................................ATTCACCGTTCTGAGTTGGCCT...............................................................................................................................................................................................................22120.002000218
.........................................................................................................ATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................19117.001710016
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCT..............................................................................................................................................................................................................2319.0090018
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCA..............................................................................................................................................................................................................2312.0020011
...................................................................................................................CTGAGTTGGCCCCAAGTGCACGTG...................................................................................................................................................................................................2411.0010001
...........................................................................................................TCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2011.0010001
................................................................................................................................AAGTGCACGTGGG-CCAG----CT------------..........................................................................................................................................................................1911.0010001
.........................................................................................................ATTCACCGTTCTGAGTTGGCCA...............................................................................................................................................................................................................2211.0010010
.............................................................................................................................CCCAAGTGCACGTGGG-CCAG----C.......................................................................................................................................................................................2111.0010001
.........................................................................................................ATTCACCGTTCTGAGTTGGT.................................................................................................................................................................................................................2011.0010100
..........................................................................................................TTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2111.0010010
......................................................................................................................................................................................................CACCAAGAG-----------------------------------------------------------------------------TATCAGACTA........................................1911.0010001
.........................................................................................................ATTCACCGTTCTGAGTTG...................................................................................................................................................................................................................1811.0010001
droSim2
CGCAGCTTCCA------------------------AGACGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCAGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................ATTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................2111440.001440139235610112002000000
.........................................................................................................ATTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................201797.0079777416300201010000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................221346.00346282527105044421200000
.........................................................................................................ATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................19128.0028180000901000000000
.........................................................................................................ATTCACCGTTCTGAGTTG...................................................................................................................................................................................................................18125.0025100022100001000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCT................................................................................................................................................................................................................21114.0014131000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCT...............................................................................................................................................................................................................22114.0014140000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCT..............................................................................................................................................................................................................2319.00981000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCC..............................................................................................................................................................................................................2315.00510000400000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-AT........................................................................................................................................................2414.00400000400000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-C....................................................................................................................................................2713.00300000300000000000
..................................................................................................................................................................................................G---CACCAAGAG-----------------------------------------------------------------------------CATCAGAC..........................................1813.00330000000000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................2013.00330000000000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2113.00320010000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGA.................................................................................................................................................................................................................2013.00312000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGG.................................................................................................................................................................................................................2012.00220000000000000000
..................................................................................................................................................................................................G---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATT...................2712.00210100000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGG...............................................................................................................................................................1812.00200000200000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCG..............................................................................................................................................................................................................2312.00220000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCTT..............................................................................................................................................................................................................2312.00220000000000000000
......................................................................................................GACATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2512.00210100000000000000
...........................................................................................................TCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2012.00220000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCA...............................................................................................................................................................................................................2212.00220000000000000000
..................................................................................................................................................................................................G---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------A.....................2511.00110000000000000000
..................................................................................................................TCTGAGTTGGCCCCAAGTG.........................................................................................................................................................................................................1911.00110000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-A.........................................................................................................................................................2311.00100000100000000000
...........................................................................................................TCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................1911.00110000000000000000
.............................................................................................................ACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................AGACTAT--A---GA---------ATTTACCATAAATA------..2411.00100100000000000000
................................................................................................................................................................................................................................................................................................AGACTAT--A---GA---------ATTTACCA..............1811.00110000000000000000
..................................................................................................................................................................................................G---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTA........................................2011.00110000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGT..............................................................................................................................................................1911.00100000100000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCTT...............................................................................................................................................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................ACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------AT....................2411.00100100000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-ATT.......................................................................................................................................................2511.00100000100000000000
dm3
CGCAGCTTCCA------------------------AGTTGG--TTTCGTGGGAAAC-----------TG-G----CGAATCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAG-----------------------------------------------------------------------------CATCAGACTAT--A---GA---------ATTTACCATAAATA------AASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................ATTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................2112587.0025870000800000000000011001000100200000000000000000001000000011000000000000000000000014000000001217015413000913700010011200006342518053202031100000000000000000010100000000000000017716809810985615421051182300000395000000000000000000000000000000010001011000000005203340001231901300000100000000000000000542023221300000951177911700165001001310203000310100000000019241841000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2211231.00123100003000010000100000010000002228260100000000000000102000000010000000000000000000007103000000012022514101690100100022000212713040301020470000000000001000001100000000000000008176047005330230221034700000235000000000000000000000000000000120215079000000008140080000380200000230000000000000002111111625000001421132901335000201160510005100000000000138201222000000
.........................................................................................................ATTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................2011137.00113700001000000000000200000000000000000000000000000000000000000000000000000000000000300000000109018030000510000000000000117180806330111000000000000000000010000010000000000070480310018131160420792000008000000000000000000000000000000000100000000000000000104320001220060000038000000000000000190013000000085707910100137001000160121000010000000000015142520000000
.........................................................................................................ATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................191761.0076100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002002000000000000000000000104020300000140000000000000000000100000000000000003345010004701203305500000027000000000000000000000000000000000000000000000000001100000528050000016000000000000000210001000000073366087001260100001601370000300000000000111260210000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-AT........................................................................................................................................................241102.00102000000000100000000000000000000000000000000000000000000000000000000000000000000005001200004653111016107300000000131110000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCT...............................................................................................................................................................................................................22184.00840000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000200200000010000000000000021000101000000000000000000000000000000000000000003704004101050100000006000000000000000000000000000000000000000000000000000100001300000004000000000000000000000000000064450000000000000000000000000000000300000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCA................................................................................................................................................................................................................21147.0047000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000006000000000000002003020000010000000000000000000000000000000000000120100200002040000005000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000031410000000000001000000000000000000210000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCA...............................................................................................................................................................................................................22143.0043000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000100010100003000000000000000000000000000000000000240300310003040000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020310000000000000000000000000000000100000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-A.........................................................................................................................................................23135.00350000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001101100124000000000010000000000000000000000000000000000000000000000000000000000100010000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCT................................................................................................................................................................................................................21127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020000000002000000000000002000010000001000000000000000000000000000000000000110100000001020000003000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000012000000000000101000000000000000000300000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCATC.............................................................................................................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTG...................................................................................................................................................................................................................18119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000320000000104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031030000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGT.................................................................................................................................................................................................................20116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000210100010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000031000000000000000000000000000000000500000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCT..............................................................................................................................................................................................................23115.0015000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000110200100000020000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000100000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCA..............................................................................................................................................................................................................23112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000100100010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCG................................................................................................................................................................................................................2119.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000201000000000000000000000000000000000000000000000100100010000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCCATC............................................................................................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................ATTCACCGTTCTGAGTTGGA.................................................................................................................................................................................................................2017.007000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000011000000000000000000000000000000000200000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................ATTCACCGTTCTGAGTTGGG.................................................................................................................................................................................................................2016.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000001000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000010000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGT..............................................................................................................................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-ATTT-.....................................................................................................................................................2615.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCAT...............................................................................................................................................................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCCG...............................................................................................................................................................................................................2214.004000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000
.............................................................................................................ACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................CATTCACCGTTCTGAGTTGGCCC...............................................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................TGGG-CCAG----CT------------TTCAGCTTCGG...............................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-ATT.......................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGT..................................................................................................................................................................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000100000000000
........................................................................................................CATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000000000000000
...........................................................................................................TCACCGTTCTGAGTTGGC.................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCC................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000
......................................................................................................GACATTCACCGTTCTGAGTTGG..................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CCAG----CT------------TTCAGCTTCGGTGCC-A.........................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGC............................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................G-CCAG----CT------------TTCAGCTTCGGTGCC-AC........................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTCACCGTTCTGAGTTGGCCATC.............................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATTCACCGTTCTGAGTTGGCTT...............................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CGCAGCTTCCA------------------------TGATGG--TTTCGTGGGAAAC-----------TG-G----CGAAGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCG-ATTT-CAACCC-GAC---TACTAACAG-----------------------------------------------------------------------------C--CAGACTAT--T---GA----TATAAATTT--CATAAATA------AASizeHit CountTotal NormTotal
No Reads
droBia1
CGCAGCTTCCA------------------------CGAAGG--TTTCGTGGGAAAC-----------TG-G----CGATGCTGC------------TGTGC-GACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTT-AACCCCTGAA---CACCAAGAG-----------------------------------------------------------------------------C---AGCCCAT--A---GA---------GCATACCATAAATA------AASizeHit CountTotal NormTotal
No Reads
droTak1
CGCAGCTTCCA------------------------AAAAGG--TTTCGTGGGAAAC-----------TG-T----CGAAGCTGC------------CCTGC-GACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGAC-ATTT-CACCCC-GACAAACACCAAAGG-----------------------------------------------------------------------------C---AGACTATATA---GA---------ATATACCATAAATA------AASizeHit CountTotal NormTotal
No Reads
droEle1
CGCAGCTTCCA------------------------TGGCGG--TTTCGTGGGAAAC-----------TG-G----CGTTGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAGTTGCACGTGGG-CCAG----CC------------TTCAGTTTCGGTGCC-ATTTTCACCCC-GAG---TGCCAGGAG-----------------------------------------------------------------------------C---AGACTATATAGAAGAA---T----ATAAACCATAAATA------ACSizeHit CountTotal NormTotal
No Reads
droRho1
CGCAGCTTCCA------------------------TTATGG--TTTCGTGGGAAAC-----------TG-G----CCAAGCTGC------------TCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----CT------------TTCAGTTTCGGTGCC-ATTTTCACCCC-AAG---TGCCAGGAG-----------------------------------------------------------------------------C---AGACT-T--G---GA---------GTTAGCCATAAATA------AASizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGCTTCCA------------------------TGATGG--TTTCGTGGGAAGC-----------TG-G----CGCTGCTGC------------CTGGC-GACATTCACCGTTCTGAGTTGGCCCCCGTTGCACGTGGG-CTGG----CC--------------CAGCTACGGTGCT-ATTA-AGCCTC--AG---CATCGAAGGCG-----GACCACCACTACC---------ACAAC---------------------------------------------TGAGACTAC--T---GAGTGCCACA-ATCTACCATAAATA------A-SizeHit CountTotal NormTotal
No Reads
droKik1
CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TG-G----CGAAGCTGC------------TCTGC-GACATTCACCGTTCTGCGTTGGCCCCAAGTGCACGTGGG-CCAA----CT------------CTCAGTTACGGTGTA-ATAA-CA-----GTGCCACATCTTAGCCAGATTCCACCACATATAT-----------------------CGCCTCCTCCTCCCCCCGAA------------------CACACTAT---------------------------TATA------AASizeHit CountTotal NormTotal
No Reads
droAna3
CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TG-T----CGAAGCCAC------------TTTGC-GACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGG-GCCGACGACT------------CTCCGCTTCCGGACCCATTG-C------------------------------------------------------------CGAAAATACATTCTTC--------------------------------------------------------AAGAGAAATATACCAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................GCACGTGGG-GCCGACGACT------------CTCC......................................................................................................................................................................2311.001000001
..................................................................................................................................GTGCACGTGGG-GCCGACGACT------------CTCC......................................................................................................................................................................2511.001000001
.................................................................................................................TTCTGCGTTGGCCCAAGGTGCACG.....................................................................................................................................................................................................2411.001000001
droBip1
CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAT-----------TTGGT---AGAAGCTGC---------TACTTTGC-GACATTCCCCGTTCTGCGTTGGCCAAAGGTGCACGTGGGGCCGA----CT------------TTCCGCTTCCGGACCTATTG-C------------------------------------------------------------CGAAAATATATCCTT------------------------------------------------------A--AAGAGAAA------AASizeHit CountTotal NormTotal
No Reads
dp5
CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAC-----------TG-G----CGAGGCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGT-------------T----------------------TCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACAAA--A---GT---------GTGA--CACAAAAA------TASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................TTCAGCGTTCGGCCAGCGAGCACG.....................................................................................................................................................................................................2411.0010010000000
droPer2
CGCAGCTTCCA------------------------CGACGG--TTGCGTGGGAAAC-----------TG-G----CGAGGCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGT-------------T----------------------TCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACAAA--A---GT---------GTGA--CACAAAAA------TASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................GTTCGGCCAGCGAGCACGTGGG-................................................................................................................................................................................................2211.001000010
droWil2
CGCAGCTTCCAACGAAAGGACGAACGAATGCCAAACGATGA--TTGCGTGGGAAATACATCTTCGTTTG-GCTTTAGTTTCTCT------------TCTGCGGACATTCAATGTTCTGCGTTTGCCCCAAGCGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
CGCAGCTTCCAG-----------------------CGTTGG--TTGCGTGGGAAAC-----------TG------CGAAGCTGC------------TTTGC-GACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
CGCAGCTTCCAG-----------------------CGCTGG--TTGCGTGGGAAAC------------G-G----CGAAGCTTC------------TGTGC-GACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................TCAACGTTCTGCGTTCGTCGCC.............................................................................................................................................................................................................2211.001001000
droGri2
CGCAGCTTCCAG-----------------------CGTTGGCTTTGCGTGGGAATT-----------TT-G----CGAAGCTGCTGCTGTGGCT--GCTGC-GACATTCAACGTTCTGCGTTGGCCGCCGACGCACGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:33 PM