ID:

dya_27

 Coordinate:

3R:23804860-23804919 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.2 -21.9 -21.9

Flybase annnotation

intron [Dyak\GE10613-in]; utr3 [utr3_minus_8883]; CDS [Dyak\GE10613-cds]; CDS [Dyak\GE10613-cds]

No Repeatable elements found

Sense Strand Reads

GGCAGCAGCGTTTGTCTATTTAATAACAAAGCCACCAATCCAAAAGAACGGTGGGTAGAACTTTGATTAATATTGCTTGCAAGATATTAGTCAAAGGTTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGC

**************************************************(((((.((((((((((((((((((........))))))))))))).)))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 M026

head

 V058

head

 V120

male body		 M056

embryo

 V052

head

 V046

embryo

 GSM1528802

follicle cells		 SRR1275484

Male prepupae
..................................................GTGGGTAGAACTTTGATTAAT......................................................................................... 21 0 1 1230.00 1230 228 523 243 140 13 70 12 0 1
......................................................................................TTAGTCAAAGGTTTTTCCCCATAG.................................................. 24 0 1 1042.00 1042 708 42 114 17 66 53 42 0 0
..................................................GTGGGTAGAACTTTGATTAATA........................................................................................ 22 0 1 579.00 579 330 104 20 76 15 8 26 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGT................................................. 25 1 1 240.00 240 97 2 21 51 23 5 15 26 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATA................................................... 23 0 1 211.00 211 159 0 20 4 11 9 8 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCA..................................................... 21 0 1 165.00 165 146 0 10 1 2 4 2 0 0
..................................................GTGGGTAGAACTTTGATT............................................................................................ 18 0 1 117.00 117 14 43 42 0 1 17 0 0 0
..................................................GTGGGTAGAACTTTGATTAA.......................................................................................... 20 0 1 74.00 74 25 13 23 5 0 8 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATAG.................................................. 23 0 1 64.00 64 64 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCAT.................................................... 22 0 1 63.00 63 45 1 8 1 7 1 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCC...................................................... 20 0 1 48.00 48 30 0 1 0 17 0 0 0 0
..................................................GTGGGTAGAACTTTGATTA........................................................................................... 19 0 1 39.00 39 12 4 12 5 0 6 0 0 0
...................................................TGGGTAGAACTTTGATTAATA........................................................................................ 21 0 1 28.00 28 26 2 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGA................................................. 25 0 1 27.00 27 21 0 0 0 5 0 1 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCATAG.................................................. 24 1 1 27.00 27 27 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAC.................................................. 24 1 1 21.00 21 13 1 1 0 3 1 2 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATA................................................... 22 0 1 21.00 21 21 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAAT......................................................................................... 20 0 1 21.00 21 17 3 0 1 0 0 0 0 0
..................................................GTGGGTAGCACTTTGATTAAT......................................................................................... 21 1 1 16.00 16 1 13 2 0 0 0 0 0 0
........................................................................................AGTCAAAGGTTTTTCCCCATAGT................................................. 23 1 1 13.00 13 8 0 3 2 0 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCA..................................................... 20 0 1 13.00 13 13 0 0 0 0 0 0 0 0
..................................................GTGGGTAGGACTTTGATTAAT......................................................................................... 21 1 1 13.00 13 10 2 0 1 0 0 0 0 0
..................................................GTGGGTAGGACTTTGATTAATA........................................................................................ 22 1 1 12.00 12 12 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCA..................................................... 21 1 1 10.00 10 10 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAT.................................................. 24 1 1 9.00 9 3 0 4 0 0 2 0 0 0
..................................................TTGGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 7.00 7 1 5 0 0 0 1 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATAGT................................................. 24 1 1 7.00 7 7 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAAT......................................................................................... 19 0 1 7.00 7 4 3 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGC................................................. 25 1 1 7.00 7 2 0 0 0 5 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCATA................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 6.00 6 0 0 0 0 6 0 0 0 0
..................................................GTGGGTAGAACTTTGATTACT......................................................................................... 21 1 1 6.00 6 0 2 4 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATACC................................................. 25 2 1 6.00 6 3 0 0 0 3 0 0 0 0
..................................................GGGGGTAGAACTTTGATTAATA........................................................................................ 22 1 1 6.00 6 0 0 0 1 4 0 1 0 0
..................................................GTGGGTAGAACTTTGATTT........................................................................................... 19 1 1 5.00 5 1 1 3 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAC......................................................................................... 21 1 1 5.00 5 0 4 0 0 1 0 0 0 0
..................................................GTGGGTAGTACTTTGATTAAT......................................................................................... 21 1 1 5.00 5 4 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGCTTAAT......................................................................................... 21 1 1 5.00 5 0 0 5 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAA....................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0
..................................................GGGGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 5.00 5 0 0 2 0 3 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCAT.................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCAGAG.................................................. 24 1 1 5.00 5 3 0 1 0 0 0 1 0 0
........................................................................................AGTCAAAGGTTTTTCCCCATAG.................................................. 22 0 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAA.................................................. 24 1 1 5.00 5 3 0 0 0 1 1 0 0 0
..................................................GTGGGGAGAACTTTGATTAAT......................................................................................... 21 1 1 5.00 5 0 1 3 0 0 1 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCC....................................................... 19 0 1 5.00 5 4 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATT................................................... 23 1 1 4.00 4 3 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCATAGT................................................. 25 2 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAAATTTGATTAAT......................................................................................... 21 1 1 4.00 4 0 0 4 0 0 0 0 0 0
..........................................................................................................................................CATCCTGTGGTGGAGAATGGGC 22 0 1 4.00 4 2 0 0 2 0 0 0 0 0
......................................................................................TTAGTCAACGGTTTTTCCCCATAG.................................................. 24 1 1 4.00 4 2 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGTT................................................ 26 1 1 4.00 4 2 0 0 0 1 0 0 1 0
..................................................GTGGGTAGAACTTTGATTATT......................................................................................... 21 1 1 4.00 4 0 1 3 0 0 0 0 0 0
......................................................................................GTAGTCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCCTAG.................................................. 24 1 1 4.00 4 0 0 2 0 0 0 2 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGAAA............................................... 27 2 1 4.00 4 3 0 0 0 0 0 1 0 0
........................................................................................AGTCAAAGGTTTTTCCCCAT.................................................... 20 0 1 3.00 3 2 0 0 0 0 1 0 0 0
......................................................................................TTAGTCAATGGTTTTTCCCCATAG.................................................. 24 1 1 3.00 3 2 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTCCCCATAG.................................................. 24 1 1 3.00 3 1 0 1 1 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAATA........................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................GTGGGTAGCACTTTGATTAATA........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATT........................................................................................ 22 1 1 3.00 3 1 1 0 0 1 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCC...................................................... 20 1 1 3.00 3 0 0 0 0 3 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCCATAGA................................................. 25 1 1 3.00 3 0 0 0 0 3 0 0 0 0
........................................................................................................................................CGCATCCTGTGGTGGAGAATGGGC 24 0 1 3.00 3 0 0 0 3 0 0 0 0 0
..................................................GTCGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 3.00 3 0 3 0 0 0 0 0 0 0
..................................................GGGGGGAGAACTTTGATTAAT......................................................................................... 21 2 1 3.00 3 0 0 2 0 0 1 0 0 0
..................................................GTGGGTAGAACTTTGATTCAT......................................................................................... 21 1 1 3.00 3 0 0 3 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATG........................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................ATGGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 3.00 3 1 2 0 0 0 0 0 0 0
.....................................................................................ATTAGTCAAAGGTTTTTCCCCATAG.................................................. 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTCCCCAT.................................................... 22 1 1 3.00 3 0 0 1 1 0 1 0 0 0
......................................................................................TTAGTCAAAGGGTTTTCCCCATAG.................................................. 24 1 1 3.00 3 1 0 2 0 0 0 0 0 0
.....................................................................................CTTAGTCAAAGGTTTTTCCCCATAG.................................................. 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTGAT......................................................................................... 21 1 1 3.00 3 0 1 1 0 0 1 0 0 0
......................................................................................TTATTCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 2.00 2 0 0 0 0 2 0 0 0 0
......................................................................................GTAGTCAAAGGTTTTTCCCCATA................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGTTTAAT......................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATCGT................................................. 25 2 1 2.00 2 0 0 1 0 0 0 0 1 0
............................................................................................AAAGGTTTTTCCCCATAG.................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................GGTAGAACTTTGATTAAT......................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................GCGTAGAACTTTGATTAATA........................................................................................ 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCC...................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCCATAGT................................................. 25 2 1 2.00 2 0 0 0 0 2 0 0 0 0
..................................................GTGGGTAGAACTTTAATTAATA........................................................................................ 22 1 1 2.00 2 0 0 1 0 1 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTCCCCCATAG.................................................. 24 1 1 2.00 2 1 0 1 0 0 0 0 0 0
..................................................GTGAGTAGAACTTTGATTAA.......................................................................................... 20 1 1 2.00 2 0 0 0 0 0 2 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGG................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAACGGTTTTTCCCCA..................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATAGTT................................................ 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGTTTTTTCCCCATAG.................................................. 24 1 1 2.00 2 0 1 1 0 0 0 0 0 0
.....................................................................................ATTAGTCAAAGGTTTTTCCCCATA................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
......................................................................................TTAGGCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 2.00 2 0 0 1 0 0 0 1 0 0
...................................................TGGGTAGAGCTTTGATTAATA........................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CTGGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAA.......................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAA......................................................................................... 21 1 1 2.00 2 0 1 0 0 1 0 0 0 0
.....................................................................................CTTAGTCAAAGGTTTTTCCCCATAGT................................................. 26 2 1 2.00 2 0 0 0 0 1 1 0 0 0
..................................................GTGTGTAGAACTTTGATTAAT......................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0
...................................................................................................................................ACAAACGCATCCTGTGGTGGAGAATGGGC 29 0 1 2.00 2 0 0 0 2 0 0 0 0 0
..................................................GTGGGTGGAACTTTGATTAAT......................................................................................... 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0
....................................................................................................................................CAAACGCATCCTGTGGTGGAGA...... 22 0 1 2.00 2 1 0 0 1 0 0 0 0 0
.....................................................................................CTTAGTCAAAGGTTTTTCCCCATAGA................................................. 26 1 1 2.00 2 1 0 0 0 1 0 0 0 0
......................................................................................TTAGTTAAAGGTTTTTCCCCATAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATAGA................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATATT................................................. 25 2 1 2.00 2 1 0 0 0 0 0 1 0 0
..................................................GTGGGTAGAACTTTTATTAAT......................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................................TTAGTCAAAGTTTTTTCCCCATAGT................................................. 25 2 1 2.00 2 1 0 1 0 0 0 0 0 0
..................................................GTGGGCAGAACTTTGATTAAT......................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................AGTCAAAGGTTTTTCCCCATAC.................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGGGAAGAACTTTGATTAAT......................................................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGCTTAATA........................................................................................ 22 1 1 2.00 2 0 0 1 0 0 0 1 0 0
......................................................................................TTAGTCAATGGTTTTTCCCCATAGT................................................. 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTT.......................................................... 16 0 2 1.50 3 0 0 0 0 0 0 0 3 0
.......................................................................................................................................ACGCATCCTGTGGTGGAGAATG... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATCGG................................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................ATGGGTAGAACTTTGATTAGT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................CAAACGCATCCTGTGGTGGAGAATGGGC 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................TCATGGGTTTTTCCCCATAG.................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCAT.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCCTGG.................................................. 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCT...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGTA................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTAGATTAAT......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGGGGTAGAACTTTGATT............................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGGAGAACTTTGATTA........................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAAGT................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................GTCAAAGGTTTTTCCCCATAGA................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTACTCTAAGGTTTTTCCCCATAG.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCCATAGC................................................. 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCTTT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................TATTTAGTCAAAGGTTTTTCCCCATAG.................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTGTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCCTA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................TAGGCAAAGGTTTTTCCCCATA................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................ACGCATCCTGTGGTGGAGA...... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TGAGTCAAAGGTTTTTCCCCAT.................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGAACTTTGATAAAT......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................GTTAGTCAAAGGTTTTTCCCCAT.................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCACCATAGT................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................ACGTGGGTAGAACTTTGATTAATA........................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ATCCTGTGGCGGAGAATGGGC 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAATCAAAGGTTTTTCCCCATAGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTATTCAAAGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTCATTAATA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTGGTCAAAGGTTTTTCCCCCTA................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTCCCCGTAG.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAGTTT............................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCACATAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................AACGCATCCTGTGGTGGAGA...... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCTCATAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGCGTAGAACTTTGATTAAT......................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATC................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCAAAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCAC.................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GAGGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGGAGAACTTTGATGAAT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................CTAGTCAAAGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTCTCCATAT.................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTCTGATTAAT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................GTCAAAGGTTTTTCCCCATAG.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................CAAAGGTTTTTCCCCATAG.................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GGGGGTAGAACTTTGATTAATT........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................GTGGGTAGAAGTTTGATTATT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTCATTAAT......................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................TTTAGTCAAAGGTTTTTCCCCATA................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCACAGGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAAAACTTTGATTAAT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................TTAGACAAAGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGTTAGAACTTTGATT............................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCCT.................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................TTGGGTAGCACTTTGATTAAT......................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTACCTATAG.................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................GTGGGTTGAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................AGTCAAAGGTTTTTCCCCATA................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTCGTCAAAGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAATGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................ATTAGTCAAAGGTTTTTCCCCAT.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTCCCC...................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGAAATTGGATTAAT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAAGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAATC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAAGTTTTTCCCCATAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAAAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................CTTAGTCAAAGGTTTTTCCCCAC.................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCACA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGTTTAA.......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................CAAAGGTTTTTCCCCATA................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................ATTAGTCAAAGGTTTTTCCCC...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTA........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTGTTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................GTGGGTAGGACTTTGATTAATT........................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGACAAAGGGTTTTCCCCAGAG.................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCTTAGT................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................CAAAGGTTTTTCCCCATAGT................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGGACTTTGATT............................................................................................ 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................TAGACAAAGGTTTTTCGCCATA................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAACGGTTTTTCCCCATAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTAAAAGGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................AGTCAAAGATTTTTCCCCATA................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GGGGGTAGAGCTTTGATTAAT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................CAAGATATTAGTCAAAGGTTTTT.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTACCCATAGT................................................. 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................ATTTAGTCAAAGGTTTTTCCCCATAG.................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............TGTCTATTTAATAACAAAGC................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATTGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGCAGAACTTTGATTA........................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTAAAAGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGGAGAACTTTGATTATT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTATAACTTTGATT............................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................AGTCAAAGATTTTTCCCCATAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAGGTTTTTCCCCATAGAA................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................CTGTTAGTCAAAGGTTTTTCCCCATA................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGTAGAACTATGATTAAT......................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................AATGTACAAACGCATCCTGCGGTGGA........ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTGGGTAGCACTTTGATT............................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TGAGCCAAAGGTTTTTCCCCATAG.................................................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................GGTAGAACTTTGATTAATA........................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................AATGTACAAACGCATCCTGTGGTGGAGA...... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTGGGTAGAACTTTGAGTAAT......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGGTTTTCCCCATAC.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGGCAAAGGGTTTTCCCCGTA................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTAATTAAT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGGTTAAT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................AGTCAAAGTTTTTTCCCCATAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCACCATAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAATGGTTTTTCCCCATAGTT................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................GTGTAGAACTTTGATTAAT......................................................................................... 19 1 2 1.00 2 0 2 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCGCCATAGT................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 1 0
..................................................GTGGGTAGGACTTTGATTAA.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCAAAGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GTACAAACGCATCCTGTGGTGGAG....... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAAGTTTTTTCCCCATAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCC...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................GTAGTCAAAGGTTTTTCCCCATAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATCG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................GTTAGTCACAGGTTTTTCCCCATAG.................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................TGTTAGTCAAAGGTTTTTCCCCATAG.................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................TTATCAATTTCGGCAATGTACAAAC....................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTACTA........................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................TTAGTCAACGGTTTTTCCCC...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTAGGTAGAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTGGGTAGCGCTTTGATTATT......................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTGGGTAGAACTTTGATTAAC......................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GGGGGTAGAACTTTGTTTAAT......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAGGGTGTTTCCCCATAGA................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...AGCAGCGTTTGTCTATTTAATAACA.................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTGGGGAGGACTTTGGTTAAT......................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................GATATTAGTCAAAGGTTTTTCCCCA..................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................TTGCTTGCAAGATATTAGTCA................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAACGGTTTTTCCCCATA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCTAAGGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATCAAT......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................TTAGTCAAAGGTTTCTCACCAT.................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................ATTTTAGTCAAAGGTTTTTCCCCAT.................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGACTAA.......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................ACGCATCCTGTGGTGGAGAATGGGC 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................ATGGGTAGAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGGTTTTCCCCATAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................AGTCAAAGCTTTTTCCCCATAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCACAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ATCCTGTGGTGGAGAATGGGC 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTGGGTAGAACTTTGGTTA........................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TGGGTAGAGCTTTGATTAAT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAAAGTTTTTCCCCATAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGCAGAACTTTGATTAA.......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTAGGTAGAACTTTGATTAAT......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................TTAGTCAAAGGTTTTTTCCCATAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTATAACTTTGATTAAT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTAGGTAGAACTTTGATTAA.......................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................AGGTTAGTCAAAGGTTTTTCCCCA..................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATTT.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTGGGTAGAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTGTCCCCATA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................GTTAGTCAAAGGTTTTTCCCCATAG.................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGCCAAAGTTTTTTCCCCATCG.................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATC........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAGAGGTTTTTCCCCA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTCA.......................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCTATAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................ACTTAGTCAAAGGTTTTTCCCCATA................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................GAAGATTAGTCAAAGGTTTTTCCCCA..................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................TCAAAGGTTTTTCCCCATAG.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................CTAGTCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................TAGTCAAACGTTTTTCCCCATAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................GTCAAAGGTTTTTCCCCATAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................ATAGTCAAAGGTTTTTCCCCATAG.................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TGATTCAAAGGTTTTTCCCCATAG.................................................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................GTAGTCAAAGGTTTTTCCCCA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGTAGAACTTTGATTAATA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...AGCAGCGTTTGTCTATTTAATAAC..................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAGGCAAAGGTTTTTCCCCATAGT................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCC........................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTAGTCAAGGGTTTTTCCCCACAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGCTTTTACCCATAG.................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................TTAGTCAAAGGCTTGTCCCCATAG.................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................GGGGGTAGAACTTTGATTA........................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGGGGTAGAACTTTGATTAA.......................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGAACTTTGCTT............................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCCATAAA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTCGTCGCAAACAGATAAATTATTGTTTCGGTGGTTAGGTTTTCTTGCCACCCATCTTGAAACTAATTATAACGAACGTTCTATAATCAGTTTCCAAAAAGGGGTATCTAAATAGTTAAAGCCGTTACATGTTTGCGTAGGACACCACCTCTTACCCG

**************************************************(((((.((((((((((((((((((........))))))))))))).)))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total