dya_26

GCAGCTTTAGCTCCCCAGTCATCTTCCAGTTAACCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACATCCAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAAAAAGCCACTGACAGCTATAAAAAC *********************************.((((((....(((.((((((((.((((.(((.(((((.((.....))..))))).))))))).)))))))).)))....))))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V058 head	M056 embryo	M043 female body	V120 male body	V052 head	M026 head	V046 embryo	SRR1275488 Male larvae
.......................................................................................TATTGCTTGAGAATACACGTAG...................................................	22	0	1	3476.00	3476	851	815	766	442	345	98	158	1
.......................................................................................TATTGCTTGAGAATACACGTA....................................................	21	0	1	412.00	412	218	8	35	74	67	4	6	0
.......................................................................................TATTGCTTGAGAATACACG......................................................	19	0	1	194.00	194	0	1	1	0	0	192	0	0
.......................................................................................TATTGCTTGAGAATACACGT.....................................................	20	0	1	121.00	121	52	9	14	27	18	1	0	0
..................................................ACGTGTATGCTCGTAGCTATAAC.......................................................................................	23	0	1	96.00	96	4	55	4	0	1	15	17	0
.......................................................................................TGTTGCTTGAGAATACACGTAG...................................................	22	1	1	70.00	70	1	69	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAGT..................................................	23	0	1	69.00	69	19	19	4	13	8	1	5	0
........................................................................................ATTGCTTGAGAATACACGTAG...................................................	21	0	1	44.00	44	4	8	29	1	2	0	0	0
.......................................................................................TACTGCTTGAGAATACACGTAG...................................................	22	1	1	26.00	26	1	24	0	1	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAT...................................................	22	1	1	21.00	21	14	0	1	1	5	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAGA..................................................	23	1	1	21.00	21	7	2	6	0	3	0	3	0
.......................................................................................TATTGCTTGAGAATACACGTAC...................................................	22	1	1	20.00	20	4	13	0	2	0	1	0	0
......................................................................................CTATTGCTTGAGAATACACGTAG...................................................	23	1	1	19.00	19	0	19	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACACGTAG...................................................	22	1	1	16.00	16	4	0	7	0	5	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAA...................................................	22	1	1	15.00	15	5	1	3	1	3	2	0	0
.......................................................................................TATCGCTTGAGAATACACGTAG...................................................	22	1	1	15.00	15	0	12	1	0	2	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTCG...................................................	22	1	1	13.00	13	11	0	0	0	2	0	0	0
.......................................................................................TATTGCTTGAGAATACCCGTAG...................................................	22	1	1	10.00	10	8	0	0	0	1	0	1	0
.......................................................................................TATTGCTTGAGAATACACTTAG...................................................	22	1	1	10.00	10	5	5	0	0	0	0	0	0
......................................................................................TTATTGCTTGAGAATACACGTAG...................................................	23	0	1	8.00	8	2	4	1	0	1	0	0	0
..................................................ACGTGTATGCTCGTAGCTAT..........................................................................................	20	0	1	8.00	8	5	0	0	0	3	0	0	0
.......................................................................................TATTGCTTGAGAATACACGCAG...................................................	22	1	1	8.00	8	3	1	1	3	0	0	0	0
.........................................................................................TTGCTTGAGAATACACGTAG...................................................	20	0	1	8.00	8	1	1	2	3	1	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAGC..................................................	23	1	1	7.00	7	3	2	0	0	2	0	0	0
.......................................................................................TATGGCTTGAGAATACACGTAG...................................................	22	1	1	7.00	7	0	7	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGGATACACGTAG...................................................	22	1	1	7.00	7	3	2	1	1	0	0	0	0
.......................................................................................TATTGCTTAAGAATACACGTAG...................................................	22	1	1	6.00	6	0	0	6	0	0	0	0	0
.......................................................................................TTTTGCTTGAGAATACACGTAG...................................................	22	1	1	6.00	6	0	6	0	0	0	0	0	0
..................................................ACGTGTATGCTCGTAGCTATA.........................................................................................	21	0	1	6.00	6	0	1	3	0	0	0	2	0
.......................................................................................TATTGCTTGAGAATACACATAG...................................................	22	1	1	6.00	6	2	1	0	0	3	0	0	0
.......................................................................................TATTGCTTGAGAATACACCTAG...................................................	22	1	1	6.00	6	3	1	1	0	0	0	1	0
.......................................................................................CATTGCTTGAGAATACACGTAG...................................................	22	1	1	6.00	6	0	2	1	1	2	0	0	0
.......................................................................................TATAGCTTGAGAATACACGTAG...................................................	22	1	1	6.00	6	1	4	0	1	0	0	0	0
.......................................................................................TATTGCTTCAGAATACACGTAG...................................................	22	1	1	5.00	5	0	1	2	0	1	0	1	0
.......................................................................................TATTGCTTGAGAATGCACGTAG...................................................	22	1	1	5.00	5	1	2	0	0	1	0	1	0
.......................................................................................TATTGCTTGAGAATACGCGTAG...................................................	22	1	1	5.00	5	0	0	2	0	2	1	0	0
......................................................................................TTATTGCTTGAGAATACACGT.....................................................	21	0	1	5.00	5	4	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTT....................................................	21	1	1	5.00	5	4	0	0	1	0	0	0	0
.......................................................................................TGTTGCTTGAGAATACACGTAC...................................................	22	2	1	5.00	5	2	3	0	0	0	0	0	0
..................................................ACGTGTATGCTCGTAGCTATAA........................................................................................	22	0	1	4.00	4	1	0	1	0	0	1	1	0
.......................................................................................TATTGCTTGCGAATACACGTAG...................................................	22	1	1	4.00	4	3	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGACTACACGTAG...................................................	22	1	1	4.00	4	2	2	0	0	0	0	0	0
.......................................................................................TATTGCCTGAGAATACACGTAG...................................................	22	1	1	4.00	4	1	0	0	1	2	0	0	0
.......................................................................................TATTGCTTGAGAGTACACGTAG...................................................	22	1	1	4.00	4	2	1	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGGAG...................................................	22	1	1	4.00	4	1	0	0	1	2	0	0	0
.......................................................................................TATTGCTTGAGACTACACGTA....................................................	21	1	1	4.00	4	4	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTTG...................................................	22	1	1	4.00	4	3	0	0	0	1	0	0	0
.....................................................................................TCTATTGCTTGAGAATACACGTAG...................................................	24	2	1	4.00	4	0	4	0	0	0	0	0	0
.......................................................................................GATTGCTTGAGAATACACGTAG...................................................	22	1	1	4.00	4	1	2	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGCATACACGTAG...................................................	22	1	1	4.00	4	2	0	0	2	0	0	0	0
.......................................................................................TATTGATTGAGAATACACGTAG...................................................	22	1	1	3.00	3	2	0	0	1	0	0	0	0
.......................................................................................TATTGCTTGAGAATAAACGTAG...................................................	22	1	1	3.00	3	1	0	0	0	1	0	1	0
.......................................................................................TGCTGCTTGAGAATACACGTAG...................................................	22	2	1	3.00	3	0	3	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGTATACACGTAG...................................................	22	1	1	3.00	3	2	0	0	0	0	0	1	0
.......................................................................................TATTACTTGAGAATACACGTAG...................................................	22	1	1	3.00	3	2	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGAAAATACACGTAG...................................................	22	1	1	3.00	3	1	1	0	0	1	0	0	0
.......................................................................................TATTGCTTGATAATACACGTAG...................................................	22	1	1	3.00	3	1	0	0	1	1	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTC....................................................	21	1	1	3.00	3	3	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATCCACGTAG...................................................	22	1	1	3.00	3	2	1	0	0	0	0	0	0
..................................................ACCTGTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	3.00	3	0	3	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATATACGTAG...................................................	22	1	1	3.00	3	2	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATCCACGTA....................................................	21	1	1	3.00	3	1	0	0	2	0	0	0	0
.......................................................................................TATTTCTTGAGAATACACGTAG...................................................	22	1	1	3.00	3	1	2	0	0	0	0	0	0
..................................................AGGTGTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	3.00	3	0	3	0	0	0	0	0	0
.......................................................................................TATTGCTTGGGAATACACGTAG...................................................	22	1	1	3.00	3	2	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATCCACGT.....................................................	20	1	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACAGGTAG...................................................	22	1	1	2.00	2	1	0	1	0	0	0	0	0
...........................................................................................GCTTGAGAATACACGTAG...................................................	18	0	1	2.00	2	0	1	1	0	0	0	0	0
.......................................................................................TATTGGTTGAGAATACACGTAG...................................................	22	1	1	2.00	2	0	1	1	0	0	0	0	0
.......................................................................................TATTGCTTGACAATACACGTAG...................................................	22	1	1	2.00	2	1	0	0	0	0	0	1	0
.......................................................................................TAGTGCTTGAGAATACACGTA....................................................	21	1	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................TATTGTTTGAGAATACACGTAG...................................................	22	1	1	2.00	2	0	2	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACATGTAG...................................................	22	1	1	2.00	2	0	1	0	0	0	0	1	0
.......................................................................................TATTGCTTGAGATTACACGTTG...................................................	22	2	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................TATGGCTTGAGAATACACGGAG...................................................	22	2	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................TCTTGCTTGAGAATACACGTAG...................................................	22	1	1	2.00	2	1	0	0	0	0	0	1	0
........................................................................................ATTGCTTGAGAATACACGTA....................................................	20	0	1	2.00	2	0	0	1	0	1	0	0	0
.......................................................................................TATTGCTTGAGATTACACGTAG...................................................	22	1	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTGG...................................................	22	1	1	2.00	2	1	0	0	0	0	1	0	0
.......................................................................................TATTGCTTGTGAATACACGTAG...................................................	22	1	1	2.00	2	2	0	0	0	0	0	0	0
......................................................................................CTACTGCTTGAGAATACACGTAG...................................................	23	2	1	2.00	2	0	2	0	0	0	0	0	0
.........................................................................................TTGCTTGAGAATACACGTAGT..................................................	21	0	1	2.00	2	0	1	1	0	0	0	0	0
..................................................ACGGGTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	2.00	2	0	2	0	0	0	0	0	0
....................................................................................ATCTATTGCTTGAGAATACACGTAG...................................................	25	3	1	2.00	2	0	2	0	0	0	0	0	0
.......................................................................................AATTGCTTGAGAATACACGTAG...................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTCT...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................CCTGACATCCAATGTTATTGCT..................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................TATTGCTTGAGAATACACTC.....................................................	20	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGAATACGCGCAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGGTTGAGAATACACGTTG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACACGTA....................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGAATACATGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TGTTGCTTGAGAATACACTTAG...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGATTACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGTATACACGAAG...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TACTGCTTGAGAATACACGTA....................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGGATACCCGTGGT..................................................	23	3	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGAATAAACGT.....................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTTCTTGAGAATACACG......................................................	19	1	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................TATTGCTTTAGAATACACGTAT...................................................	22	2	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TAGTGCTTGAGAATACACGTAG...................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................TATTGCTTGAGAATACACGTCGA..................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTTTATGCTCGTATCTATAAC.......................................................................................	23	2	1	1.00	1	0	1	0	0	0	0	0	0
..................................................ACGTGTATGCTCGTAGCTATAACA......................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACACGTATC..................................................	23	3	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGATTGAGAATACACGTAT...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
........................................................................................ATTGCTTGTGAATACACGTAG...................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATCCACGTAC...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................TTATTGCTTGAGTATACACGTA....................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGGGATTACACGT.....................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TTTTGCTTGATAATACACGT.....................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................ATATTGCTTGAGAATACACGTAG...................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGATTGAGCATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................CCTATTGCTTGAGAATACACGTAG...................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................GTATTGCTTGAGAATACACGTAG...................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGACAATACACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGCGAATACCCGT.....................................................	20	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGGGCATACACGTA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................CTATTGCTTGGGAATACACGTAG...................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0
.....................................................................................AGTATTGCTTGAGAATACACGTAG...................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TGTTGCTGGAGAATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTGGGGGATACACGTAGT..................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTAAGAATACACGTAC...................................................	22	2	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TAGTGCTGGAGAAAACACGTAG...................................................	22	3	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATCACTTGAGAATACACGTAG...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACGCGTCG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TTTTGCTTGAGAATACACG......................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGTATTCACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACAGG......................................................	19	1	1	1.00	1	0	0	0	0	0	1	0	0
........................................................................................ATCGCTTGAGAATACACGTAG...................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TGTTGCTTGAGAATACACCTAG...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGCGAATACACGCAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCGTGAGAATACACGTAG...................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAGTACACGTA....................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTCGAGAATACACTTAG...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGGATACACGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACTCGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TGTGGCTTGAGAATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGATAATACACGT.....................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................ATTGCTTGGGAATACACGTAG...................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TAGTGCTGGAGATTACACGTA....................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................TATCTTGAGAATACACGTAG...................................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAAAATACACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TGTTGCTTGAGAATGCACGGAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTTCTTGAGAATACACGGAG...................................................	22	2	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................CATTGCTTGAGAATACACGAAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATGCACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TGTTGCTTGAGAATACACGTAGTT.................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGTATACACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................AATTGCTTGATAATACACGTAGC..................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCGTGAGAATACACGTA....................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
.....................................................TGTATGCTCGTAGCTATAAC.......................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0
......................................................................................TTATTGCTTGAGAATACACGTA....................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................TATTGCTTGAGCATACACGTTG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................CGCTTGCTTGAGAATACACGTAG...................................................	23	3	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGTGTATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAGAACACGTAC...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGATTACACGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................AACGTATTGCTTGAGAATACACGTAG...................................................	26	3	1	1.00	1	0	0	1	0	0	0	0	0
......................................................................................CTATTGCTTGAGAATACACGTAGT..................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACCCGTC....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGGGGATACACGTCG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGTATACCCGTA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTGGA..................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACATGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TCTTGCTTGAGAATACACGGAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAAGACACGCAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGCA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTGGGAATACACGCAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTGAGGATACACGTA....................................................	21	2	1	1.00	1	0	0	0	0	1	0	0	0
..................................................ACGTGTATACTCGTAGCTAT..........................................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGCAT...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTGGAGGATAAACGTAGT..................................................	23	3	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................TATTGGTTGAGTATACACGTTG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGAAG...................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0
..................................................ACGTGTATGCTCGTCACTATAA........................................................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACCTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACGCGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGCGACTACACGT.....................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGCGAATACACGGA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGACTACACGTGG...................................................	22	2	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATTGCTTTATAATACACGTAG...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................AATGGCTTGAGAATACACGTAG...................................................	22	2	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................TATTGCTTGAGAATACACGCTG...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TGTTGCGTGAGAATACACGTTG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TTTTGCTTGAGAATACACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACACCTAG...................................................	22	2	1	1.00	1	0	0	0	0	0	0	1	0
......................................................................................CTATTGCTTGAGAATACACGT.....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCGTGAGAATACACGGA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................ATTGCTTGAGAATACACGTAGT..................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TAGGGCTTGAGAATACACGTCG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGGGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTGTATGCTAGTAGCTATAAC.......................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGACTTCGCGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACAC.......................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................TATTGCTCGAGAATACACGTAG...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATAAGCGTAT...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATGGATTGAGAATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTGTATACTCATAGCTATAAC.......................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGGGTATACAGGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTGATAATACACGTCG...................................................	22	3	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TAGTGCTTGAGGATGCACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATAGACGTAG...................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TAGTGCTTGAGGATATACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTACTTGAGAAAACACGTA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATGGCTTGAGAATACCCGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................TATATTGCTTGAGAATACACGTAG...................................................	24	2	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATGGCTTGTGAATACACGTAG...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TAGTGCGTGAGAATACACGTA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACTTAA...................................................	22	2	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTAAA..................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATTGCTAGAGAATACACGTAC...................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0
......................................................................................CTATTGCTTGAGAATACACTTAG...................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATGGCTTGAGAATACACGTAC...................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
...................................................................................TTGCTATTGCTTGAGAATACACGTAG...................................................	26	2	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGTTTGAGAATACACGCAG...................................................	22	2	1	1.00	1	0	0	0	0	0	0	1	0
....................................................................................CTCTATTGCTTGAGAATACACGTAG...................................................	25	3	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGGTTGAGTATACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................TATGCTTGAGAATACACGTAG...................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0
....................................................................................ACCTATTGCTTGAGAATACACGTAG...................................................	25	3	1	1.00	1	0	0	1	0	0	0	0	0
.................................................CACGTGTATGCTCGTAGCTA...........................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATGGCTTGAGAATACACGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATTCACGT.....................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTCCTTGAGAATACACGTAG...................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTACTTGAGAATACACGTACC..................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTGGGATTACACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGCGTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGCGTACACGAAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTTAGAATCCACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATAAACGTG....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGGGCTTGGGAATACACGTAG...................................................	22	3	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGAATACACGCAC...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TGTTGCGTGAGAATACACGTA....................................................	21	2	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGATTCCACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGATAATACACGTA....................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGAGGATACACGTA....................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATTGCTTGAGAGTACACGT.....................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................TATTGCTTGAGAAAACACGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTCAGAATACACCTAC...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATCCACGTAGT..................................................	23	1	1	1.00	1	0	0	0	0	0	0	1	0
..................................................ACGTCTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TAGTGCTTGAGAATACACGGAG...................................................	22	2	1	1.00	1	0	0	0	0	0	0	1	0
...................................................................................TAGATATTGCTTGAGAATACACGTAG...................................................	26	3	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................CAGTGCTTGAGAATACACGTAGT..................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0
.......................................................................................TATTGCTTGAGAATACACGTCGT..................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTTTATGCTCGTAGCTATAAC.......................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGGATAAACGTA....................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGGGACTACACGTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACCCGTGG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGATAGTATACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTCGAGAATACACG......................................................	19	1	1	1.00	1	0	0	0	0	0	1	0	0
..........................................................................................TGCTTGAGAATACACGTAG...................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0
........................................................................................ATTGCTTGAGAATACACGT.....................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGCATGAGAATACACTTAG...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACTTAT...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTGTATGCTCGTATCTTTAAC.......................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................ATGCTTGAGAATACACGTAG...................................................	20	1	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACGTTGT..................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TAGTGCTTGAGAATACACGTAC...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
..................................................ACGTGTATGCTCGGAGCTATAAC.......................................................................................	23	1	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................TATCGCTTGAGAATACACG......................................................	19	1	1	1.00	1	0	0	0	0	0	1	0	0
.......................................................................................TATTGCTTCAGCATAAACGTAG...................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGCATACACGTA....................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0
..................................................ACGTGTATGCTCGTAGCTATAGC.......................................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACCCGTA....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................TATAGCTTGAGAAGACACGCA....................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGATTACGCGCAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACAAACAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGACTCCACGTCG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGCGGATACACGTAG...................................................	22	2	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTCAGAATACACCTAT...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACCGGCA....................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGACAATACAAGTA....................................................	21	2	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGACAATACAAGTAC...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATGGCTTGCGTATACACGTAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGTGAATATGCGTAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................TATTACTTGAGAATACACAAAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
......................................................................................CGATTGCTTGCGAATACACGTAG...................................................	23	3	3	0.33	1	0	1	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGATTACACTTTG...................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTATAATACACTTAG...................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGATTACTCGTT....................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTAGAGCATACACGTG....................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTAGATAATACACTTAG...................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGCGACTACACGGAG...................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGAGAATACACTAG....................................................	21	3	3	0.33	1	0	0	0	1	0	0	0	0
.......................................................................................TATCGCTTGAGATTACTCGTAG...................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0
.......................................................................................TATTGCTTGACAATACACAGAG...................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACAGGCAG...................................................	22	3	4	0.25	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGTGAATACAAGTGG...................................................	22	3	5	0.20	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTAGAATACACATTG...................................................	22	3	5	0.20	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTTATAATACACGTAA...................................................	22	3	6	0.17	1	1	0	0	0	0	0	0	0
.......................................................................................AATTGCTTGAGGTTACACGTA....................................................	21	3	7	0.14	1	1	0	0	0	0	0	0	0
.......................................................................................TATTGCTTGTGAATACAAGG.....................................................	20	3	12	0.08	1	1	0	0	0	0	0	0	0
......................................................................................................................ATTGGCTCAGCAATTAAAAAC.....................	21	3	17	0.06	1	0	0	1	0	0	0	0	0
....................................................GTGTAGGCTCGTAGCGGT..........................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0	0

CGTCGAAATCGAGGGGTCAGTAGAAGGTCAATTGGGTTAGAGGTTACCGGTGCACATACGAGCATCGATATTGGACTGTAGGTTACAATAACGAACTCTTATGTGCATCAAGTGGCTCTAAACAAGTCGTTAATTTTTTCGGTGACTGTCGATATTTTTG **********************************.((((((....(((.((((((((.((((.(((.(((((.((.....))..))))).))))))).)))))))).)))....))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V058 head
........................................................................................................................................TGTCGGTGACAGTAGATATT....	20	3	15	0.07	1	1

Species	Coordinate	ID	Type	Alignment
droYak3	2R:17032186-17032345 +	dya_26	confident	GCA-G-CTTT-AGC-------TC---CCCAGTCA----------------------TCT-TC-CA-GTTA-------------ACC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATT-AAAAAA-G---CCACTG-ACA---GCTATA-------AAAAC
droEre2	scaffold_4845:13905033-13905186 +	der_26	confident	GCA-G-CT-----------------------------------------------------C-CCAGTGGATTACGGTGGCGACTC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAGGG-G---CCACCG-GCA---GCGATA--------AAAC
droSec2	scaffold_1:9448872-9449010 -	dse_23	confident	GCA-G-CTG-------------------------------------------------C-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAAGC-G----------------------------------
droSim2	2r:12622831-12622969 -	dsi-mir-137	Known_mirbase	GCA-G-CTG-------------------------------------------------C-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAAGC-G----------------------------------
dm3	chr2R:11952738-11952900 -	dme-mir-137	Known_mirbase	GCA-G-CTGCCA--------GTTGGCGC-TGTTG----------------------TGC-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATA-AAAAGA-G---C-------------------------GAAAC
droEug1	scf7180000409672:857317-857495 -			CCA-G-ATCTTA--------GTTATCCC-AGTTA----------------------ACC-GC-CAAGTGGATTAAATGGTCGACGG--------------------------CAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAACCAAG---CCACTG-AAA---GCTATA-----AAAAAAC
droBia1	scf7180000301506:2893845-2894034 -			CCG-G-GTCTTG--------GTTATCGC-AGTTA----------------------TGT-GC-CAAGTGGATTAAAGTGGCCA---------------TCTCAACCGCAGCCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATT-AAAACG-G---TCACCG-AATGGGGCGATA-------AAAAC
droTak1	scf7180000415795:609447-609632 +			CCA-G-ATCTTA--------GTTATCCC-AGTTA----------------------TGC-GG-CAAGTGGATCAACGTGGCGACGG---------CCACCT-----------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAACGGAG---CCACAA-AACGGGGCGATA-------AAAAC
droEle1	scf7180000491107:959904-960080 -			AAG-T-CCCGAA--------GTC---CTTACTCA----------------------TGCCGCACAAGTGGATTAAAGTGGCGACGG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATC-AAACGG-A---CGACAAGAAA---GCTATT-------AAAAA
droRho1	scf7180000779911:146868-147046 +			GCA-G-CTCGTG--------GTTATCCTTACTTA----------------------TGC-GC-CAAGTGGATTAAAGTGGCGACGG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATG-AAACGT-ACGGCCA----GGG---GCCATT-----AAAAAGT
droFic1	scf7180000453948:1198595-1198771 -			CCA-GGATCTCG--------GTTATCCC-GGCTA----------------------TTC-GC-AGCGAGGATTACAGTGGCAGAAG--------------------------CTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATC-AAGCGC-G---ACACTA-CTG---ACAATA-------AAAAC
droKik1	scf7180000302476:2644161-2644322 -			CCA-A-GGAT-ATC------------C---ACCATTTGTCCCCCGGACTA------T--------------------------AAG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATC-CAAACG-G---AAATCG-AAA---G-TGTA-------GAAGC
droAna3	scaffold_13266:15447231-15447346 +	dan_23	confident	GCA-A-C----------------------------------------------------------------------------CTG--------------------------GAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATC-GAAGTG-G---C------------------------------
droBip1	scf7180000396547:1600308-1600455 -			GCGAG-GTG-----------------CTTGGTTA----------------------TGT-GC-CAAGTGGATTAAAGTGGCAA---------------TCT----------GAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATC-GAAA--------------------------------------
dp5	3:16385893-16385993 -	dps-mir-137	Known_mirbase	-----------------------------------------------------------------------------------------------------------------AATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATC-AAA---------------------------------------
droPer2	scaffold_4:376976-377076 +	dpe_44	confident	-----------------------------------------------------------------------------------------------------------------AATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATC-AAA---------------------------------------
droWil2	scf2_1100000004954:1110984-1111093 -	dwi_38	confident	---------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-CA-A---CAA---------------A-------AAAAA
droVir3	scaffold_10468:1943-2054 -	dvi-mir-137	Known_mirbase	-----------------------------------------------------------------------------------------------------------------AATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATC-CAA-------------------------TAAAAAC--TAT-A
droMoj3	scaffold_6496:10609986-10610156 +	dmo_25	confident	GCA-G-CCGC-AGC--------CG---G-AGCTG----GCCGCTTGATTATATTTATG------AAGTGG-TCAACGGAGTGTGGACACAATTGGAAAT-T----------GGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA----------------------------------------------
droGri2	scaffold_15245:16918488-16918641 -	dgr_35	candidate-rescued	GCT-G-GTGC-ATCTGCTAAGTGATTTT-ATTTA----------------------TGAAGC-AGAGGAGAT-----TGGAAA---------------ATT----------AAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACT-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

GCA-G-CTTT-AGC-------TC---CCCAGTCA----------------------TCT-TC-CA-GTTA-------------ACC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATT-AAAAAA-G---CCACTG-ACA---GCTATA-------AAAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	3476.00	3476	98	766	815	158	345	851	442	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	412.00	412	4	35	8	6	67	218	74	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	194.00	194	192	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	121.00	121	1	14	9	0	18	52	27	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	96.00	96	15	4	55	17	1	4	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	69.00	69	1	4	19	5	8	19	13	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	44.00	44	0	29	8	0	2	4	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	21.00	21	0	1	0	0	5	14	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	21.00	21	0	6	2	3	3	7	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	20.00	20	1	0	13	0	0	4	2	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	15.00	15	2	3	1	0	3	5	1	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	8.00	8	0	1	4	0	1	2	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	8.00	8	0	0	0	0	3	5	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	8.00	8	0	2	1	0	1	1	3	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	7.00	7	0	0	2	0	2	3	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	6.00	6	0	3	1	2	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	5.00	5	0	0	0	0	1	4	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	5.00	5	0	0	0	0	0	4	1	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	4.00	4	1	1	0	1	0	1	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTCT...................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................CCTGAC--ATCC--AATGTTATTGCT..................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACTC.....................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACA..........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TGTATGCTCGTAGCTATAAC...........................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACAC.......................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAAA..................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTA...............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACTAG....................................................................	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCA-G-CT-----------------------------------------------------C-CCAGTGGATTACGGTGGCGACTC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAGGG-G---CCACCG-GCA---GCGATA--------AAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	7446.00	7446	966	446	598	252	1057	4127	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	1221.00	1221	31	5	113	2	148	922	0
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	301.00	301	12	1	34	1	48	205	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	128.00	128	4	25	7	18	4	70	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	102.00	102	9	1	8	6	22	56	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	92.00	92	46	2	5	1	11	27	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	81.00	81	7	6	12	0	14	42	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	60.00	60	0	0	6	10	3	41	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	31.00	31	4	0	5	0	4	18	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	20.00	20	0	0	0	6	1	13	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	18.00	18	0	7	2	0	1	8	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	17.00	17	1	2	2	2	1	9	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	17.00	17	5	1	0	0	0	11	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	12.00	12	1	0	1	0	2	8	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	8.00	8	0	1	2	0	2	3	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	7.00	7	0	0	1	0	1	5	0
...............................................................................................................................ACGTGTATGCTCGTAGCTA...............................................................................................................	19	1	7.00	7	1	0	0	0	0	6	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	6.00	6	1	1	0	2	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTG....................................................................	21	1	5.00	5	1	0	0	0	0	4	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	5.00	5	1	0	0	0	2	2	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	4.00	4	1	0	1	0	1	1	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	4.00	4	0	0	0	0	0	4	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	4.00	4	2	0	0	0	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	3.00	3	0	0	1	0	0	2	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	3.00	3	0	0	1	1	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGG..................................................................	23	1	3.00	3	0	0	0	1	1	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	3.00	3	0	1	0	0	2	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACG......................................................................	20	1	3.00	3	0	0	0	0	0	3	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGA..................................................................	22	1	2.00	2	2	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	2.00	2	0	0	0	0	1	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	2.00	2	0	0	1	0	0	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAA...........................................................................................................	23	1	2.00	2	0	0	1	0	0	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCT................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	2.00	2	0	0	0	0	0	2	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAA............................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAA...................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTCT................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAAA..................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACTAG....................................................................	21	4	1.00	4	3	0	0	0	0	1	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATA.............................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGC..................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGT.....................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAT...........................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACTA.....................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAA...................................................................	23	1	1.00	1	0	0	1	0	0	0	0
................................................................................................................................................................C--AATGTTATTGCTTGAGAATACACG......................................................................	25	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGTC.................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	1.00	1	0	0	0	0	1	0	0

droSec2

GCA-G-CTG-------------------------------------------------C-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAAGC-G----------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	6061.00	6061	945	1100	1541	2475
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	1075.00	1075	26	226	42	781
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	275.00	275	13	78	8	176
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	211.00	211	16	79	52	64
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	108.00	108	17	27	22	42
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	82.00	82	4	5	44	29
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	62.00	62	43	4	5	10
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	21.00	21	5	5	8	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	19.00	19	0	2	9	8
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.................................................................	24	1	14.00	14	1	5	0	8
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	12.00	12	0	5	0	7
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	10.00	10	2	3	0	5
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	10.00	10	0	2	2	6
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	7.00	7	0	0	4	3
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	5.00	5	0	3	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	5.00	5	1	0	0	4
...............................................................................................................................ACGTGTATGCTCGTAGCTA...............................................................................................................	19	1	4.00	4	1	0	0	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	4.00	4	0	3	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	4.00	4	0	0	2	2
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	4.00	4	1	0	1	2
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	4.00	4	2	1	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	4.00	4	3	0	0	1
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	3.00	3	0	0	2	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	3.00	3	2	0	0	1
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	3.00	3	2	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA................................................................	25	1	2.00	2	0	1	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAT...................................................................	21	1	2.00	2	1	1	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	2.00	2	0	0	0	2
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTT................................................................	25	1	2.00	2	0	0	1	1
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	2.00	2	1	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACG......................................................................	18	1	2.00	2	0	0	0	2
..............................................................................................................................CACGTGTATGCTCGTAGCTATAA............................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACA..........................................................................................................	24	1	1.00	1	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTA.................................................................	24	1	1.00	1	0	0	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	1.00	1	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAAA..................................................................	23	1	1.00	1	0	0	0	1
...............................................................................................................................ACGTGTATGCTCGTAGCT................................................................................................................	18	1	1.00	1	1	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAGT..................................................................	24	1	1.00	1	0	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAC.................................................................	24	1	1.00	1	0	0	1	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	1.00	1	0	0	1	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATA.............................................................................................................	22	1	1.00	1	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACAC.......................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTTT...............................................................	26	1	1.00	1	0	0	0	1
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACCTG........................................................................................................	26	1	1.00	1	1	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTT...............................................................................................................	19	1	1.00	1	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGG..................................................................	23	1	1.00	1	0	1	0	0
..................................................................................................................................TGTATGCTCGTAGCTATA.............................................................................................................	18	1	1.00	1	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACT......................................................................	19	1	1.00	1	0	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGA..................................................................	22	1	1.00	1	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACTAG....................................................................	21	5	0.60	3	0	0	0	3

droSim2

GCA-G-CTG-------------------------------------------------C-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAAAGC-G----------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	1537.00	1537	479	47	113	50	16	460	2	3	52	56	3	240	1	15	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	1299.00	1299	896	93	206	0	2	101	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	218.00	218	32	3	0	1	3	76	7	4	52	28	3	9	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	130.00	130	70	4	44	2	0	2	0	0	0	0	0	8	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACAC.......................................................................	18	1	92.00	92	0	0	0	0	2	90	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	57.00	57	6	0	4	0	1	25	1	0	7	4	0	9	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	50.00	50	5	0	0	1	4	39	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	33.00	33	0	2	0	1	0	0	0	0	20	7	0	2	0	1	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	26.00	26	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	22.00	22	0	0	0	3	0	17	0	0	1	0	0	0	0	1	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACC..........................................................................................................	24	1	17.00	17	0	0	0	0	1	16	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	12.00	12	0	0	0	0	0	0	0	7	2	2	0	1	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	7.00	7	1	1	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	7.00	7	5	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	6.00	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	5.00	5	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	3.00	3	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGG..................................................................	23	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACG......................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTT....................................................................	22	1	3.00	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACA......................................................................	19	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACA..........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACG......................................................................	20	1	2.00	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCT................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTA...............................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCT................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGA.....................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAAC...........................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACA........................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TGTTATTGCTTGAGAA............................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGG.....................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAG...........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATAC.........................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAA...................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTACC..................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAGA..................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACT......................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCC................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGC.................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATA..........................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACTAG....................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

GCA-G-CTGCCA--------GTTGGCGC-TGTTG----------------------TGC-TC-CAAGTGGATTACGATGGCGTCGC--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATA-AAAAGA-G---C-------------------------GAAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	47512.00	47512	0	0	0	0	24	5	0	0	0	13	0	3	0	0	4	0	0	3	5	0	0	0	3	34	0	3	1	2	14	48	1296	1462	5	4	0	0	0	0	1	1	1	0	0	0	12	1	0	1	3	1	3	1	0	0	46	0	36	33	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	2	46	1	0	0	3	0	0	2	3	2	12	94	3	43	119	42	137	12	18	20	39	637	11	2	0	2	4	5	8	5	38	3	46	0	26	7	702	72	7	39	0	64	44	175	3	599	54	801	698	0	0	0	0	2	0	0	0	0	0	3	1	2	0	0	2	3	1	2	0	58	2	0	4	0	0	0	0	0	0	1	0	0	0	4	4	2253	2892	0	1776	9	3	296	2010	56	1577	18	1062	29	1272	42	0	0	2	1	0	753	25	14	23	3	0	0	0	50	0	57	0	0	0	0	0	0	7	16	0	0	0	0	0	0	3	0	0	2	27	88	47	7	27	17	110	6	25	9	37	2	0	0	0	0	0	0	0	536	402	0	80	462	21	43	0	4	226	429	2	153	178	5	0	0	9	363	340	1	2	0	10	6	1	2	1	20	6	19	1	0	0	10	31	7	12	7	28	4	24	1	5	13	10	12	1351	1382	1413	1485	39	2041	568	410	19	147	8	22	9	13	989	3	775	932	4	26	17	25	42	23	117	44	10	17	8	7	54	4	28	2	471	5796	710	269	1082	579	543	5	3	3	22	16	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	9825.00	9825	0	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	0	0	0	2	0	0	0	1	7	7	105	143	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	7	0	2	22	2	9	0	0	0	0	31	1	0	0	0	0	0	1	0	0	0	0	0	2	1	54	23	1	9	0	10	9	49	2	67	6	66	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	190	287	0	145	1	2	88	160	7	113	7	223	4	320	4	0	0	0	0	0	320	7	3	10	1	0	0	0	7	0	8	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	4	3	0	0	2	10	0	1	1	5	0	0	0	1	0	0	0	0	24	13	0	14	137	2	5	0	0	36	120	1	25	22	1	0	0	0	84	40	0	0	0	3	1	1	1	0	2	0	1	1	1	0	1	3	3	2	0	1	2	2	0	0	1	2	2	507	591	615	682	1	53	107	65	0	53	0	2	0	2	262	1	309	417	0	1	1	2	5	0	18	6	3	6	1	2	4	1	3	0	87	2370	139	35	93	95	58	2	0	3	1	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	2863.00	2863	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	29	27	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	16	2	0	1	0	2	1	1	0	13	1	9	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	31	55	0	29	1	0	31	42	2	35	0	50	1	65	14	0	0	0	0	0	72	0	2	3	0	0	0	0	4	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	9	0	1	0	0	3	2	0	0	3	0	0	0	0	0	0	0	0	3	4	0	2	41	2	1	0	0	13	48	0	13	19	0	0	0	0	11	38	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	1	0	0	1	1	0	0	177	180	177	236	0	2	28	11	1	27	1	0	0	1	74	0	55	136	0	0	0	0	2	0	3	1	0	1	0	0	2	0	2	0	56	762	44	9	18	27	25	0	0	0	0	1	0
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...............................................................................................................................ACGTGTATGCTCGTAGCTA...............................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0

droEug1

CCA-G-ATCTTA--------GTTATCCC-AGTTA----------------------ACC-GC-CAAGTGGATTAAATGGTCGACGG--------------------------CAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAACCAAG---CCACTG-AAA---GCTATA-----AAAAAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCG-G-GTCTTG--------GTTATCGC-AGTTA----------------------TGT-GC-CAAGTGGATTAAAGTGGCCA---------------TCTCAACCGCAGCCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATT-AAAACG-G---TCACCG-AATGGGGCGATA-------AAAAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCA-G-ATCTTA--------GTTATCCC-AGTTA----------------------TGC-GG-CAAGTGGATCAACGTGGCGACGG---------CCACCT-----------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATC-AAACGGAG---CCACAA-AACGGGGCGATA-------AAAAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAG-T-CCCGAA--------GTC---CTTACTCA----------------------TGCCGCACAAGTGGATTAAAGTGGCGACGG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATC-AAACGG-A---CGACAAGAAA---GCTATT-------AAAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCA-G-CTCGTG--------GTTATCCTTACTTA----------------------TGC-GC-CAAGTGGATTAAAGTGGCGACGG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATG-AAACGT-ACGGCCA----GGG---GCCATT-----AAAAAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCA-GGATCTCG--------GTTATCCC-GGCTA----------------------TTC-GC-AGCGAGGATTACAGTGGCAGAAG--------------------------CTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATC-AAGCGC-G---ACACTA-CTG---ACAATA-------AAAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCA-A-GGAT-ATC------------C---ACCATTTGTCCCCCGGACTA------T--------------------------AAG--------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATC-CAAACG-G---AAATCG-AAA---G-TGTA-------GAAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCA-A-C----------------------------------------------------------------------------CTG--------------------------GAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATC-GAAGTG-G---C------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	3316.00	3316	386	452	40	637	512	1289
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	436.00	436	8	10	2	117	85	214
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	198.00	198	4	3	0	63	50	78
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	123.00	123	3	16	3	18	38	45
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	80.00	80	3	27	2	4	2	42
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	73.00	73	23	6	0	14	6	24
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	42.00	42	1	0	1	7	10	23
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	31.00	31	6	1	1	9	2	12
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	13.00	13	2	0	0	2	2	7
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	11.00	11	0	0	0	2	1	8
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	9.00	9	0	2	0	3	2	2
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	8.00	8	0	4	0	3	1	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	8.00	8	0	0	0	3	3	2
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	8.00	8	2	2	0	1	0	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	8.00	8	1	0	0	2	1	4
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	6.00	6	0	1	1	1	0	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	5.00	5	0	3	0	1	0	1
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	5.00	5	1	0	0	0	0	4
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	5.00	5	0	0	0	0	1	4
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	4.00	4	0	0	1	0	0	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.................................................................	24	1	4.00	4	0	0	0	2	2	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	4.00	4	2	2	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	3.00	3	0	0	0	0	1	2
........................................................................................................................................................................TATTGCTTGAGAATACAC.......................................................................	18	1	3.00	3	0	1	0	2	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGG..................................................................	23	1	3.00	3	1	0	0	2	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACG......................................................................	18	1	2.00	2	0	0	0	2	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTTT...................................................................	22	1	2.00	2	0	0	0	1	1	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	2.00	2	1	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGC.....................................................................	20	1	2.00	2	0	0	0	2	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTTA...................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAT...........................................................................................................	23	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTG....................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAT...................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGA..................................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	1.00	1	0	1	0	0	0	0
................................................................................................................................CGTGTATGCTCGTAGCTATA.............................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACT..........................................................................................................	24	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGCTT...................................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGG.....................................................................	20	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGC..................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTTC...................................................................	22	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAA...................................................................	23	1	1.00	1	0	1	0	0	0	0

droBip1

GCGAG-GTG-----------------CTTGGTTA----------------------TGT-GC-CAAGTGGATTAAAGTGGCAA---------------TCT----------GAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATC-GAAA--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----------------------------------------------------------------------------------------------------------------AATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATC-AAA---------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	4840.00	4840	1	1578	826	353	437	767	340	7	4	527
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	267.00	267	0	48	11	21	14	125	47	0	0	1
...............................................................................................................................ACGTGTATACTCATAGCTATAAC...........................................................................................................	23	1	204.00	204	0	7	96	14	82	5	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	111.00	111	0	82	10	5	2	5	2	0	0	5
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	91.00	91	0	9	2	7	1	60	12	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	77.00	77	0	13	14	9	11	16	14	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	60.00	60	0	17	17	4	5	14	1	0	0	2
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	42.00	42	0	17	0	5	0	14	6	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	32.00	32	0	2	24	5	0	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	23.00	23	0	3	2	7	2	2	0	0	0	7
..............................................................................................................................CACGTGTATACTCATAGCTATAA............................................................................................................	23	1	16.00	16	0	2	0	1	8	2	3	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	13.00	13	0	5	3	1	0	0	0	0	0	4
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	11.00	11	0	3	3	1	0	2	1	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	10.00	10	0	1	0	1	0	7	1	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTATA.............................................................................................................	21	1	10.00	10	0	1	1	1	3	2	0	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	9.00	9	0	0	3	2	2	2	0	0	0	0
..............................................................................................................................CACGTGTATACTCATAGCTATA.............................................................................................................	22	1	9.00	9	0	2	1	2	4	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGC..................................................................	22	1	7.00	7	0	0	6	1	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	7.00	7	1	1	2	0	0	3	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTATAA............................................................................................................	22	1	7.00	7	0	2	0	0	4	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	6.00	6	0	1	0	0	0	3	2	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	5.00	5	0	3	1	0	1	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	4.00	4	0	3	0	0	0	1	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	4.00	4	0	0	0	0	1	1	2	0	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	4.00	4	0	3	0	0	1	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGA..................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	3.00	3	0	0	0	1	0	2	0	0	0	0
..............................................................................................................................CACGTGTATACTCATAGCTATAAC...........................................................................................................	24	1	3.00	3	0	0	2	1	0	0	0	0	0	0
..............................................................................................................................CACGTGTATACTCATAGCTAT..............................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTATAACA..........................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACG......................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGC..................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTA....................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGTA.................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTACA..................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTAT..............................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTA.................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTA...............................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAA...................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT.................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGCT....................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTT....................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGC.....................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................TGTTATTGCTTGAGAATACACGTAG...................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------------------------------------AATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATC-AAA---------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	2043.00	2043	24	220	89	638	770	302
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	375.00	375	0	5	2	147	201	20
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	163.00	163	0	2	2	64	88	7
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	66.00	66	62	0	0	1	3	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	53.00	53	0	0	1	19	22	11
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	36.00	36	0	0	0	16	18	2
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	21.00	21	0	4	0	12	5	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	20.00	20	0	0	0	7	13	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	20.00	20	0	7	1	4	8	0
..............................................................................................................................CACGTGTATACTCATAGCTATAA............................................................................................................	23	1	16.00	16	3	0	1	5	7	0
...............................................................................................................................ACGTGTATACTCATAGCTATAAC...........................................................................................................	23	1	16.00	16	9	0	5	2	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	14.00	14	0	2	0	6	5	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	8.00	8	0	0	0	5	3	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	8.00	8	0	1	0	1	6	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	8.00	8	0	0	0	0	7	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	7.00	7	0	0	1	4	2	0
..............................................................................................................................CACGTGTATACTCATAGCTAT..............................................................................................................	21	1	6.00	6	0	0	0	2	4	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	5.00	5	0	1	1	1	2	0
..............................................................................................................................CACGTGTATACTCATAGCTATA.............................................................................................................	22	1	4.00	4	0	0	2	1	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	4.00	4	0	1	1	0	2	0
..............................................................................................................................CACGTGTATACTCATAGCT................................................................................................................	19	1	3.00	3	0	0	0	0	3	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTT....................................................................	20	1	3.00	3	0	0	0	0	3	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	3.00	3	0	0	0	3	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	2.00	2	0	1	0	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT.................................................................	23	1	2.00	2	0	0	0	0	2	0
.........................................................................................................................................................................ATTGCTTGAGAATACACG......................................................................	18	1	2.00	2	0	0	0	2	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTGT...................................................................	22	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................ACGTGTATACTCATAGCTATAA............................................................................................................	22	1	2.00	2	0	1	0	1	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	2.00	2	0	0	0	1	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGG..................................................................	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTTA...................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGCC....................................................................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................ACGTGTATACTCATAGCTATA.............................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.................................................................	24	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGAA.................................................................	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGA..................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTG....................................................................	21	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAA...................................................................	21	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTTT...................................................................	22	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................CACGTGTATACTCATAGCTATAAT...........................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTATC..................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACG......................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGT.....................................................................	18	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCT................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGGGA................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................ACGTGTATACTCATAGCTAT..............................................................................................................	20	1	1.00	1	0	0	0	1	0	0

droWil2

---------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-CA-A---CAA---------------A-------AAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	4067.00	4067	138	430	178	1404	1917
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	375.00	375	1	22	23	68	261
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	306.00	306	302	0	0	0	4
...............................................................................................................................ACGTGTATTCTTATAGCTGTAAC...........................................................................................................	23	1	135.00	135	99	1	1	28	6
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	109.00	109	2	14	16	5	72
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	49.00	49	1	2	5	32	9
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	32.00	32	0	24	0	1	7
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	19.00	19	1	2	4	8	4
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	15.00	15	0	2	0	2	11
...............................................................................................................................ACGTGTATTCTTATAGCTGTA.............................................................................................................	21	1	14.00	14	12	0	0	1	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	12.00	12	1	2	0	0	9
...............................................................................................................................ACGTGTATTCTTATAGCTGTAA............................................................................................................	22	1	9.00	9	7	0	0	1	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	7.00	7	0	1	1	2	3
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	6.00	6	0	2	0	0	4
...............................................................................................................................ACGTGTATTCTTATAGCTGT..............................................................................................................	20	1	5.00	5	5	0	0	0	0
...............................................................................................................................ACGTGTATTCTTATAGCTG...............................................................................................................	19	1	4.00	4	4	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTG....................................................................	21	1	4.00	4	0	0	1	0	3
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTA....................................................................	22	1	4.00	4	0	0	0	1	3
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTT.................................................................	22	1	3.00	3	0	0	0	0	3
.......................................................................................................................................................................TTATTGCTTGAGAATACACG......................................................................	20	1	3.00	3	3	0	0	0	0
...............................................................................................................................ACGTGTATTCTTATAGCTGTAACC..........................................................................................................	24	1	3.00	3	3	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGTTT-...............................................................	23	1	2.00	2	0	0	0	1	1
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	2.00	2	0	0	0	1	1
........................................................................................................................................................................TATTGCTTGAGAATACACGG.....................................................................	20	1	2.00	2	2	0	0	0	0
..............................................................................................................................CACGTGTATTCTTATAGCTGTAA............................................................................................................	23	1	2.00	2	2	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	2.00	2	0	0	0	1	1
.........................................................................................................................................TTATAGCTGTAACCTGTT--AT..................................................................................................	20	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................ACGTGTATTCTTATAGCTGTAACCT.........................................................................................................	25	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACAC.......................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................ACGTGTATTCTTATAGCTGC..............................................................................................................	20	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGA..................................................................	22	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................TTATTGCTTGAGAATACACGT.....................................................................	21	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTGT...................................................................	22	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAGG..................................................................	20	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTCC...................................................................	22	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTA....................................................................	19	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACTAG....................................................................	21	5	0.20	1	0	0	0	0	1

droVir3

-----------------------------------------------------------------------------------------------------------------AATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATC-CAA-------------------------TAAAAAC--TAT-A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	3284.00	3284	3	57	652	179	1	1	2	1	0	3	0	0	0	0	178	123	54	134	91	62	12	60	140	6	3	0	5	2	35	34	20	41	0	6	0	0	0	1	0	20	1	3	3	0	0	0	0	0	0	0	0	0	1	0	0	2	1	15	52	118	601	353	0	2	0	20	16	8	0	15	2	1	7	0	4	18	14	38	63
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	867.00	867	0	2	43	6	0	1	0	0	0	0	0	0	0	0	69	40	27	50	52	27	0	47	37	0	0	0	0	0	2	3	0	4	0	2	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	354	83	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	414.00	414	0	3	23	0	0	3	0	0	0	0	0	0	0	0	26	16	19	20	33	18	2	34	20	1	1	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	163	23	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	126.00	126	3	87	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	5	1	0	0	0	0	0	0	0	14	0	1	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	82.00	82	3	17	1	13	0	0	0	0	0	0	0	0	0	0	6	0	3	3	3	2	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	15	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	79.00	79	0	0	55	4	0	0	0	0	0	0	0	0	0	0	2	1	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	47.00	47	0	0	4	4	0	0	0	0	0	0	0	0	0	0	2	1	0	1	3	3	0	2	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	36.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	3	1	4	3	0	3	4	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	33.00	33	0	2	2	5	0	0	0	0	0	0	0	0	0	0	2	2	0	2	1	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	4
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	20.00	20	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	2	1	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATG..........................................................................................	38	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	14.00	14	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	12.00	12	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAA............................................................................................................	23	1	10.00	10	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	10.00	10	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCT................................................................................................................	19	1	10.00	10	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	2	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	8.00	8	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTAT..............................................................................................................	21	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	5.00	5	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGC.....................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGT.........................................................................................	39	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAAA...........................................................................................................	24	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATA.............................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTA...............................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGT.....................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................CACGTGTATGCTCGTAGCC................................................................................................................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAACC..........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................ACGTGTATGCTCGTAGCT................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................ATTGCTTGAGAATACACGTT....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAAAAA.........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGA.....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATT.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGTAGT..................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAGTAT-T..............................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCA-G-CCGC-AGC--------CG---G-AGCTG----GCCGCTTGATTATATTTATG------AAGTGG-TCAACGGAGTGTGGACACAATTGGAAAT-T----------GGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA----------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	8045.00	8045	2318	134	800	1654	2187	952
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	796.00	796	70	0	189	378	18	141
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	399.00	399	42	0	86	192	9	70
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	223.00	223	5	20	12	20	163	3
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	207.00	207	139	0	7	10	49	2
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	153.00	153	15	4	21	28	48	37
........................................................................................................................................................................TATTGCTTGAGAATACACGTAT...................................................................	22	1	46.00	46	6	0	11	18	3	8
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	45.00	45	11	1	4	10	7	12
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	32.00	32	18	0	0	2	9	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAC...................................................................	22	1	29.00	29	0	0	2	2	24	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGC..................................................................	23	1	18.00	18	1	0	1	2	14	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATA.............................................................................................................	21	1	15.00	15	0	3	0	2	10	0
........................................................................................................................................................................TATTGCTTGAGAATACACG......................................................................	19	1	13.00	13	0	0	4	6	2	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTT....................................................................	21	1	12.00	12	2	0	2	5	0	3
........................................................................................................................................................................TATTGCTTGAGAATACACGTAA...................................................................	22	1	9.00	9	2	0	2	4	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT-................................................................	24	1	8.00	8	2	1	0	1	1	3
.........................................................................................................................................................................ATTGCTTGAGAATACACGTA....................................................................	20	1	8.00	8	7	0	0	1	0	0
...........................................................................................................................................................................TGCTTGAGAATACACGTAG...................................................................	19	1	7.00	7	5	0	0	1	1	0
.......................................................................................................................................................................TTATTGCTTGAGAATACACGTAG...................................................................	23	1	5.00	5	4	0	0	1	0	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGT.....................................................................	19	1	5.00	5	2	0	2	0	0	1
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	5.00	5	2	0	0	1	2	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAA............................................................................................................	22	1	4.00	4	0	1	1	2	0	0
............................................................................................................................................................................GCTTGAGAATACACGTAG...................................................................	18	1	3.00	3	1	0	0	0	2	0
........................................................................................................................................................................TATTGCTTGAGAATACACGC.....................................................................	20	1	2.00	2	0	0	0	1	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGG..................................................................	23	1	2.00	2	1	0	0	0	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAT...................................................................	21	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................ACGTGTATGCTCGTAGCTAT..............................................................................................................	20	1	2.00	2	0	0	1	1	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTG....................................................................	21	1	2.00	2	0	0	0	1	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGTC-................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTATA..................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................GCTTGAGAATACACGTAGT..................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................TTGCTTGAGAATACACGT.....................................................................	18	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTCT...................................................................	22	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATAA............................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTC....................................................................	21	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................CACGTGTATGCTCGTAGCTATA.............................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAAA..................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TATTGCTTGAGAATACACGTCA...................................................................	22	1	1.00	1	0	0	1	0	0	0

droGri2

GCT-G-GTGC-ATCTGCTAAGTGATTTT-ATTTA----------------------TGAAGC-AGAGGAGAT-----TGGAAA---------------ATT----------AAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACT-------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................TATTGCTTGAGAATACACGTAG...................................................................	22	1	175.00	175	129	46
........................................................................................................................................................................TATTGCTTGAGAATACACGTA....................................................................	21	1	18.00	18	6	12
........................................................................................................................................................................TATTGCTTGAGAATACACGT.....................................................................	20	1	12.00	12	6	6
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAG...................................................................	21	1	8.00	8	8	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGT..................................................................	23	1	3.00	3	2	1
..........................................................................................................................................................................TTGCTTGAGAATACACGTAG...................................................................	20	1	3.00	3	3	0
........................................................................................................................................................................TATTGCTTGAGAATACACGTAGA..................................................................	23	1	2.00	2	1	1
................................................................................................................................CGTGTATGCTCGTAGCTATAAC...........................................................................................................	22	1	1.00	1	1	0
.........................................................................................................................................................................ATTGCTTGAGAATACACGTAGT..................................................................	22	1	1.00	1	1	0
...............................................................................................................................ACGTGTATGCTCGTAGCTATAAC...........................................................................................................	23	1	1.00	1	1	0

dya_26

2R:17032236-17032295 +

Known Ortholog

Canonical miRNA

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.9	-27.7	-27.6