ID:

dya_259

 Coordinate:

2L:8406790-8406975 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.5 -9.1 -8.9

Flybase annnotation

CDS [Dyak\GE18556-cds]; exon [dyak_GLEANR_2343:5]; CDS [Dyak\GE18556-cds]; exon [dyak_GLEANR_2343:4]; intron [Dyak\GE18556-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACGCCGCCAAATGTTAAAGAAGTCTTCATCAACTCTATTCCATACGGGAGTGCAAAGTGTACACTTCGATTTAAAAACAGAGAATCCGAAATTGTGTGTTACGACAGGATTGGTAAGGGCTTTCAGATGGCACAAGGCCAAAAGAGAACAATTCTTGGCAGATCCTTTAACTGTAAGTACACATTGTAAATATGGCTATGGTCCTGGATTTGTAATCTATTTTTCTGCATTTCAGTGACCCGTCAGAAAGGAGATGCCCCCATCGAGATCAGCTTTTTAAGATAA
**************************************************((.....(((.((((((((((((.........))))).)))...))))..)))................))********************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 V058
head
 M026
head
..................................................................................................GTTACGACAGGATTGGTAAGGGC..................................................................................................................................................................... 23 0 1 7.00 7 5 0 1 1
..................................................................................................GTTACGACAGGATTGGTAAGG....................................................................................................................................................................... 21 0 1 4.00 4 3 1 0 0
.......................................................................TTAAAAACAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 27 0 1 4.00 4 3 1 0 0
....................................................................................................TACGACAGGATTGGTAAGG....................................................................................................................................................................... 19 0 1 3.00 3 3 0 0 0
............................................................................AACAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0
..................................................GTGCAAAGTGTACACTTCGA........................................................................................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0
......................................................................TTTAAAAACAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0
..................................................GTGCAAAGTGTACACTTCGAT....................................................................................................................................................................................................................... 21 0 1 2.00 2 0 1 1 0
............................ATCAACTCTATTCCATACGGGA............................................................................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0
.......................................................................TTAAAAACAGAGAATCCGAA................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
..............................................................................CAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0
..............................................................................................GTGTGTTACGACAGGATTGGTAAGGGC..................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
....................................................................................................TACGACAGGATTGGTAAGGGCT.................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0
...............................AACTCTATTCCATACGGGA............................................................................................................................................................................................................................................ 19 0 1 2.00 2 0 2 0 0
........................CTTCATCAACTCTATTCCATACGGGA............................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0
.............GTTAAAGAAGTCTTCATCAACT........................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1
.......................................................................TTAAAAACAGAGAATCCGAAATT................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0
.......................................................................................CGAAATTGTGTGTTACGACAGG................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
.......................................................................TTAAAAACAGAGAATCCGAAAT................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
..................................................................................................................................................GAACAATTCTTGGCAGATC......................................................................................................................... 19 0 1 1.00 1 0 1 0 0
......................................................................TTTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
.........AAATGTTAAAGAAGTCTTCAT................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
...........................................................................AAACAGTAAATCCGAAATTGTGTT........................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0
...................................................................................................................................................................................................................................................TCAGAAAGGAGATGCCCCCATCGA................... 24 0 1 1.00 1 0 1 0 0
...........................................TACGGGAGTGCAAAGTGTACACTTC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
............................................................................AACAGAGAATCCGAAATTGTGTGTTA........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
..................................................GTGCAAAGTGTACACTTCGATTTA.................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
............................................................................................................................CAGATGGCGCAAGGCCAAAAGA............................................................................................................................................ 22 1 1 1.00 1 0 1 0 0
.................................................................................................TGTTACGACAGGATTGGTAAGGGC..................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
......................................................................................................................................AAGGCCAAAAGAGAACAATT.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................TTAAAAACAGAGAATCCGAAATTGTGTG........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
............................................................................................TTGTGTGTTACGACAGGATTG............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................................TTGACCCGTCAGAAAGGAGAT.............................. 21 1 1 1.00 1 0 1 0 0
............................................................................AACAGAGAATCCGAAATTGT.............................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.......................................................................TTAAAAACAGAGAATCCGAAATTGTGTGT.......................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
.............................................................................................................ATTGGTAAGGGCTTTCAGATG............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.......................................................................................................GACAGGATTGGTAAGGGCT.................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
........................................................................TAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
...........................CATCAACTCTATTCCATACGGGA............................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
....................................................................................................TACGACAGGATTGGTAAGGGCTTT.................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
....................................................................................................TACGACAGGATTGGTAAGGGC..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...........................CATCAACTCTATTCCATACGG.............................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0
..........................................ATACGGGAGTGCAAAGTGT................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0
.......................................................................................................................GCTTTCAGATGGCACAAGGCCAAAAGAG........................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
.......................................................................TTAAAAACAGAGAATCCGAAA.................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..................................................................................................GTTACGACAGGATTGGTAAGGG...................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
....................................TATTCCATACGGGAGTGCAAAGTGTAC............................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.........................................CATACGGGAGTGCAAAGTGTAC............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
...................................................................................................................................................AACAATTCTTGGCAGATCCTTT..................................................................................................................... 22 0 1 1.00 1 1 0 0 0
....................................................................GATTTAAAAACAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0
..............................................................................................................................................AAGAGAACAATTCTTGGCAGATC......................................................................................................................... 23 0 1 1.00 1 0 1 0 0
....CCGCCAAATGTTAAAGAAGTCTTCATCAA............................................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0
.......................................................................TTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
................................................................CTTCGATTTAAAAACAGAGA.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................GACAGGATTGGTAAGGGCTTTCAGATGG........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
...................................................................................................TTACCACAGTACTGGTAAGGGC..................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0
................................................................CTTCGATTTAAAAACAGAGAAT........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
..............................CAACTCTATTCCATACGGGAGT.......................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
..................................................................................................GTTACGACAGGATTGGTAAGGGCT.................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.....................................................................ATTTAAAAACAGAGAATCCGAAATTGTGT............................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0
.........................................................................AAAAACAGAGAATCCGAAATTCTGT............................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0
......................................................................................................CGACAGGATTGGTAAGGGCTTTCAGAT............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
........................................................................................................................................................TTCTTGGCAGATCCTTTAACTT................................................................................................................ 22 1 1 1.00 1 1 0 0 0
....................................................................................ATCCGAAATTGTGTGTTACGACAGG................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.....................................................................................................ACGACAGGATTGGTAAGGGC..................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................GACAGGATTGGCAAGGGCT.................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0
.........................................CATACGGGAGTGCAAAGTGTACA.............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
............................................................................AACAGAGAATCCGAAATTGTGTGTT......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
...................................................................CGATTTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0
...............................................................................................................TGGTAAGGGCTTTCAGATGGCACAA...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
................................................................................................GTGTTACGACAGGATTGGTAAGG....................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
.........................................................................................................................TTTCAGATGGCACAAGGCCAAAAGA............................................................................................................................................ 25 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................................................................CAGAAAGGAGATGCCCCCATCGAGATC............... 27 0 1 1.00 1 0 1 0 0
.........................................................................................................CAGGATTGGTAAGGGCTTTCA................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0
..............................................................................................GTGTGTTACGACAGGATTGGTAA......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
..................................................................................................GTTACGACAGGATTGGTAA......................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
........................................................................................................ACAGGATTGGTAAGGGCTTTCAGAT............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
..........................................................................................................AGGATAGGTGAGGGCTTT.................................................................................................................................................................. 18 2 3 0.33 1 0 1 0 0
...........................................................................................................GGACTGGTAAGGGCGTTTA................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0
....................................................................................................................................................ACAGTACTTGGCAGATCAT....................................................................................................................... 19 3 20 0.05 1 0 1 0 0
.......................................................................................................ACCAGGATTGGTAGGGGC..................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTGCGGCGGTTTACAATTTCTTCAGAAGTAGTTGAGATAAGGTATGCCCTCACGTTTCACATGTGAAGCTAAATTTTTGTCTCTTAGGCTTTAACACACAATGCTGTCCTAACCATTCCCGAAAGTCTACCGTGTTCCGGTTTTCTCTTGTTAAGAACCGTCTAGGAAATTGACATTCATGTGTAACATTTATACCGATACCAGGACCTAAACATTAGATAAAAAGACGTAAAGTCACTGGGCAGTCTTTCCTCTACGGGGGTAGCTCTAGTCGAAAAATTCTATT
*********************************************************************************************************************************************************************((.....(((.((((((((((((.........))))).)))...))))..)))................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body
.............................................................................................................................................TTTCTCTCGTTAAGTACTGT............................................................................................................................. 20 3 16 0.06 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:8406740-8407025 + dya_259 GACGCCG--CCAAATGTTAAAGAAGTCTTCATCAACTCTATTCCATACGGGA---GTGCAAAGTGTACACTTCGATTTAAAAACAGAGAATCCGAAATTGTGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGGCACAAGGCCAAAAGAGAACAATTCTTGGCAGATCCTTTAACTGTAAGTACACATT-GT-AAA--------TA-T-------------------------GGCTATGGTCCTGGATTTG------TAATCTAT---------TTTT---CTGCATTTCAGTGACCCGTCAGAAAGGAGATGCCCCCATCGAGATCAGCTTTTTAAGATAA
droEre2 scaffold_4929:13425927-13426205 - GACGCCG--CCAAATGTTGAGGAAGTCTTTATCAACTCTATTCCATACGGGA---AAGCAAAGTGTACCCTTAGATTCAAAAGCAGGTCCTCTGAAATTGGGTGTTATGACAG---GATTGGT----AAGG--GCTTTCAGATGGCTCAAGGCCCGAAGAGGACAATTCTTGGCAGATCCTTTAACTGTAAGTACACATT-GT-GAC--------AC-TGCTGCA----------------------------------T-----------ACCTGTTCTATTT--TTTT---TTACTTCTCAGTGACCCGTCGGAATGAAGATCCTCCCATCGAGATCAGCCTTTTAAGATGA
droSec2 scaffold_16:183491-183774 + GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGGATGCTAAATGCACAATTCGATTTAAAAACAGATACTCTGAAATTTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGTCCCAAGGCCAGAAGAGAAGTATTCTAGGCAGATCGTTTAACTGTAAGTACCCATG-GT-GAA--------AT-T-------------------------GGCCATGATCCTGATT---AC--------TTAC---------TTAT---CAACTTTTCAGTGACCCGCCAGAATGAAGATCCTCCCATCGCGATCAGCTTTTTAAGATAA
droSim2 2l:11655782-11656065 + GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGGATTCTAAATGCACACTTCGATTTAAAAACAGATACTCTGAAATGTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGTCCCAAGGCCAGAAGAGAACTATTCTTGGCAGATCGTTTAATTGTAAGTACACATG-GT-GAC--------AT-T-------------------------GGCCATGATCCTGATT---AC--------TTAC---------TTAT---CAACTTTTCAGTGACCCGCCAGAATGAAGATCCTCCTATCGCGATCAGCTTTTTAAGATAA
dm3 chr2L:11984058-11984341 + GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGCATGCTAAATGTACACTTCGATTTAAAAGCAGACACTCTGAAATTTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTAAGATGGCCCAAGGCCAGAAGCGAACCATCCTTGGCAGATCCTTTAACTGTAAGTACACAAT-GT-GAC--------AT-T-------------------------GGCCATAATCCTGATT---AC--------TTAC---------TTTT---CTTCCTTTCAGTGACCCGCCAAAATGAAGATCCTCCCATTGAGATTAGCTTTTTAAGATAA
droEug1 scf7180000409122:376265-376549 + GACTCCA--CCAAATGTGGATGAAATCACTGTCAAATCTTTTCCATATGGGA---TGGCTGAGTGTACCTTCACCTTCAGAAATCGATCTTCCTTGATTGTGTTTGAAGACAGGAAGGCAGGG----AAAG--GTTTCCAGATGGTTCAAGGCCAGAAAAGAACTTTGCTTGGCAAAGCCTTTAACTGTAAGTATACTTT-TT-CAT--------AT-T---------------------------TTATAATTATTTTT---CCTTAACTAA-------------CT----TTTTTCATTTAGTAACTCATCGAAATGAAGATCCTCCAATTAAAATCAGCTTATTAAGATAA
droBia1 scf7180000302422:1035739-1036023 - GACGCCT--CCCAATGTGGACGAAGTCCATATCAGCTCCATACCATACGGGG---ATGCTAGGTGCAGCTTGACCTTTAAAAATCAATCTTCCAGCATCGAGTGTTCAGATAG---GATGGGT----AAGG--GCTTCCAGAAGGTTCAAGGTCAGAAGAAAACAGCGCTCGGCAGAACCTTCAATTGTAAGTAGAATGA-AGC-ACATATATAT---------ATTCCC--------------------------AGTCGTG------ATGGCTAT---------ATTT---TCATTTTTCAGTGACTCGTCGAAATAATGATCAACCCATTCAGATCAGATTTTTAAGATAA
droTak1 scf7180000415863:262699-262976 - GACGCCT--CCAAATGTGGACGAAATCCATATCAGCTCTATTCCATACGGGA---ATGCCAAGTGTAGCTTGACCTACAGAAATCAATCCTCCACTATATCGTGCTCAGATAG---GTTGGGC----CAGG--GCTTCCAGATGATTCAAGATCAGAAGAAAACTCTGCTTGGCAAAACCTTTAATTGTAAGTAGAATAT-TTC-ATT--------T-GG------------------------------------A--A--G------ATTTCCCTCTTAAAATG--AT---TTATTTTTCAGTAACCCGTCGGAATGAAGAATCCCCTATTCAGATCAAGCATTTAAGATAA
droEle1 scf7180000491028:3182655-3182935 - GACGCCG--CCAAACGTGGACGAGGTCTATATCAACTCGATTCAATATGGAA---GGGCTAAGTGCAGCCTGACTTTCAGGAACCATTCCAGCAAAATTGTCTGTTGGGACAG---TTTTGGT----CCTG--GTTTCCAGAAGGTTCAGGGTCAGCGGAGAACTTCGCTTGGCAGATCCTTTAACTGTAAGTTTGGAGT-TAC-ATACACATTC---------GTTCTC--------------------------A--A--G------TTACCTGC---------TTTT---CTCCTTTTCAGTGACCCATAAGAACGATGATCCGCCCATCGAAATCAGCTTCTTGAGTTAA
droRho1 scf7180000779410:505124-505403 + AACGCCC--CCAAACGTAGACGAGATCCATATCAATTCTATTCCATATGAAG---ATGCTAAGTGTAGCTTTACCATCAGGTTTCAATCCAGCGAAATTGTCTGTTGGGACAG---GTTTGGT----CCGG--GTTTCCAGATGGTTCAAGATCAGAGGAGGACGTTTCTTGGCAGATCCTTTAACTGTAAGTTGTGGGC-TTC-TTTCATATTC---------GTTCGT--------------------------A--A--G------TTACCTGT---------TTT----TTTCTTTTTAGTTACCCATAGGAACGAGGATCCCCCCATCGAAATCAGTTTCTTGAGATAA
droFic1 scf7180000453936:190166-190447 - CACGCCC--CCGAATGTGGATGAGGTTTACATCAATTCAATAATATATGGGG---ACGCCAGGTGTAGCTTGACATTCAAAAATCGGTCATCTGAAATTCACTGTTTTGACAG---GATTGGT----AAGG--GTTTCCAGATGACCCAAGGGCAGGAGAAAACCCTGCTTGGCAAGTCCTTTAACCGTAAGTGGAGTAT-ACC-AAACATATTC---------GTTCTT--------------------------T--G--A------CTAACTCT---------TTAT--TCCTTTTTTCAGTGACCCACAAGAGTGGAGATCCCCCAATTCAAATCAGTGTCTTAAGATAA
droKik1 scf7180000301476:573004-573286 - AATGCCG--CCAAATGTCAACGAAGTCCACGTTAACTATATTCGATATGGCG---ACAGTAAGTGCAGGTTTATTTTCAGTAACTTGTCTTCGGAAATGCAGTGCTCCATGCA---GTCTGGT----CCTG--GCTTTGAGATGGTTCAGAACCAAAAGAGAACCATGCTTGGCAAATCCTTTAATTGTACGTTGAAAGT-GAA-TATATTATAC---------TTTTTG--------------------------A--A--A------CTAACTCT---------TTCT-TTTCCGCCTCCAGTGACCCACGTAAGAGGAGATTCCCCGCAGCATATCAGCATAGTAAGATAA
droAna3 scaffold_12943:2258612-2258886 - GACCCCT--CCTAATGTGAACGAAGTGGAGGTCAACTTTATACGATATGGAA---TGAATAAGTGTCAGTGGATATTCCGAAACAAATACTCCGGGATGAACTGC---GGAAA---ATCTCTG----CAGA--GCTTCGAGATGGTTCAAGGAGGGAAAAGGACCTTATTGGGCACCTCCTTCAATTGTGAGTTATGGTGTTT--C---------AA-C-------------------------TTTCAAAACAATAATT---CC--------TCAT---------T-----TCCTTACTTTAGTTTCAGTTTCCAGAGAAGATCCGCCCAAGTACATTCAGATTTTGAGATAA
droBip1 scf7180000396728:1038945-1039215 + GACCCCA--CCCAATGTGGACGAAGTGGAGGTCAACTTTATACGATATGGAG---CAAATAACTGTCAGTGGATATTCTCCAATACCCACAACACACT---GAATTGTGGGAA---GTCTTTG----CAGA--GGTTCGAGATGGTTCAGGGTGGAAAGAGGACCATATTGGGCTCATCCTTCAATTGTAAGTTATAGCA-TCC-T---------C--------ATATCT--------------------------A--A--A------ATATCTCTAATC-----------TTCTGTGTTTAGTTTCAGTTACCAAAGGAGATCCACCCATCCATGTTCATATTTTGAGATAA
dp5 4_group3:7288206-7288493 - GTCGCCG--CTGAATGTGGATGAGGTGCATGTAAACTATTTGCGCTATGCAC---GTAACACATGTCGCTGGGTCTTCGGGCCTAGATTCTCCAATATGGACTGCGGCGTCAG---ATCGGGGGCTCAAGGCACCTTCGAGATGGTTCAGGGCAAGAAGAGAACTTTGTTGGGAAGATCGTTCAATGGTGAGTCTATCAT-ACA-ATT--------C-AAAAGTGTAACTCCCTT---------------------------------------------AAAATTA--TGGAATCCTTTGCAGTGACTCTCGTGAAAGGTGATGAGCCTGTGTATATCAGTTATTTGGAATAA
droPer2 scaffold_1:8733788-8734075 - GTCGCCG--CTGAATGTGGATGAGGTGCATGTAAACTATTTGCGCTATGCAC---GTAACACATGTCGCTGGGTCTTCGGGCCTAGATTCTCCAATATGGACTGCGGCGTCAG---ATCGGGGGCTCAAGGCAACTTCGAGATGGTTCAGGGCAAGAAGAGAACTTTGTTGGGAAGATCGTTCAATGGTGAGTCTATCAT-ACA-ATT--------T-AAAAGTGTAACTCCCTT---------------------------------------------AAAATTA--TGGAATCCTTTGCAGTGACTCTCGTGAAAGGTGATGAGCCTGTGTATATCAGTTATTTGGAATAA
droWil2 scf2_1100000004521:2697353-2697651 + AATGCCA--CCCAACGTTGAAGAGGTGGAAATTAATTATATACGCTATGGAG---ATAGCAAATGTCGTTGGATATATAAATCGCATTCATCATTTATGGATTGTGGTTATAGGAAATCGGGC----AAAA--AATTCGAAATGCTGCAGGGTAACAAAAGAACTTTGTTGGCCACAAATTTCAATGGTAGGTACAATTA-GA-AAATTATTTTG---------TTT----CGTTAAAATAATTAATTGTATTTTTGCTT---AA--------T------------------TTTTTTTTATAGTGACTCATCGCAAAGGCGATCCACCCATCTATATAAATTTGATGAACTAG
droVir3 scaffold_12963:13206098-13206382 - AATGTCCCTCCCCAAGTGGACCAAGTGCTGGTCAAATACATTCGATTTGCGC---AGGGCAAATGCAGTTGGAATTTTCAATACAACAGCTCCAATGTGATTTGTACTTCTCC---GGCGAAT----CAGG--TCTTTGAACTAATCCAGGGCAAGCAACGGCGACTCTTGGGCAACAACTTTAATGGTATGTCTATTCA-CA-TAAC--------TTGAGCTTGGATCGAT-------------------------------------TTA--------AATCT-TTTC-CCTTTCGCTATAGTGACACTTCATAGGGGCGATCCGCCGATGTACATTAACGTGTTGAACTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GACGCCG--CCAAATGTTAAAGAAGTCTTCATCAACTCTATTCCATACGGGA---GTGCAAAGTGTACACTTCGATTTAAAAACAGAGAATCCGAAATTGTGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGGCACAAGGCCAAAAGAGAACAATTCTTGGCAGATCCTTTAACTGTAAGTACACATT-GT-AAA--------TA-T-------------------------GGCTATGGTCCTGGATTTG------TAATCTAT---------TTTT---CTGCATTTCAGTGACCCGTCAGAAAGGAGATGCCCCCATCGAGATCAGCTTTTTAAGATAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2317.00710000150000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2114.00401000030000
............................................................................TTAAAAACAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................2714.00401000030000
.........................................................................................................TACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................1913.00300000030000
.................................................................................AACAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................2212.00200000020000
.......................................................GTGCAAAGTGTACACTTCGA.......................................................................................................................................................................................................................................................................................2012.00202000000000
...........................................................................TTTAAAAACAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................2812.00200000020000
.......................................................GTGCAAAGTGTACACTTCGAT......................................................................................................................................................................................................................................................................................2112.00201000100000
..............................ATCAACTCTATTCCATACGGGA---...........................................................................................................................................................................................................................................................................................................2212.00200000020000
............................................................................TTAAAAACAGAGAATCCGAA..................................................................................................................................................................................................................................................................2012.00200000020000
...................................................................................CAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................2012.00200000020000
...................................................................................................GTGTGTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2712.00200000020000
.........................................................................................................TACGACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................2212.00201000010000
.................................AACTCTATTCCATACGGGA---...........................................................................................................................................................................................................................................................................................................1912.00202000000000
..........................CTTCATCAACTCTATTCCATACGGGA---...........................................................................................................................................................................................................................................................................................................2611.00101000000000
...............GTTAAAGAAGTCTTCATCAACT.............................................................................................................................................................................................................................................................................................................................2211.00110000000000
............................................................................TTAAAAACAGAGAATCCGAAATT...............................................................................................................................................................................................................................................................2311.00101000000000
............................................................................................CGAAATTGTGTGTTACGACAG---G.............................................................................................................................................................................................................................................2211.00101000000000
............................................................................TTAAAAACAGAGAATCCGAAAT................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................GAACAATTCTTGGCAGATC...............................................................................................................................................................................1911.00101000000000
...........................................................................TTTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................................................................................2611.00100000010000
...........AAATGTTAAAGAAGTCTTCAT..................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................TCAGAAAGGAGATGCCCCCATCGA...................2411.00101000000000
.............................................TACGGGA---GTGCAAAGTGTACACTTC.........................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................AACAGAGAATCCGAAATTGTGTGTTA.......................................................................................................................................................................................................................................................2611.00100000010000
.......................................................GTGCAAAGTGTACACTTCGATTTA...................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................TGTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................................AAGGCCAAAAGAGAACAATT..........................................................................................................................................................................................2011.00100000010000
............................................................................TTAAAAACAGAGAATCCGAAATTGTGTG..........................................................................................................................................................................................................................................................2811.00100000010000
.................................................................................................TTGTGTGTTACGACAG---GATTG.........................................................................................................................................................................................................................................2111.00100000010000
.................................................................................AACAGAGAATCCGAAATTGT.............................................................................................................................................................................................................................................................2011.00100000010000
............................................................................TTAAAAACAGAGAATCCGAAATTGTGTGT.........................................................................................................................................................................................................................................................2911.00100000010000
.....................................................................................................................ATTGGT----AAGG--GCTTTCAGATG..................................................................................................................................................................................................................2111.00100000010000
............................................................................................................GACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................1911.00100000010000
.............................................................................TAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................................................................................2411.00100000010000
.............................CATCAACTCTATTCCATACGGGA---...........................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................TACGACAG---GATTGGT----AAGG--GCTTT........................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................TACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2111.00101000000000
.............................CATCAACTCTATTCCATACGG................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................ATACGGGA---GTGCAAAGTGT................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................................................................................................................................GCTTTCAGATGGCACAAGGCCAAAAGAG.................................................................................................................................................................................................2811.00100000010000
............................................................................TTAAAAACAGAGAATCCGAAA.................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--G............................................................................................................................................................................................................................2211.00100000010000
......................................TATTCCATACGGGA---GTGCAAAGTGTAC..............................................................................................................................................................................................................................................................................................2711.00100000010000
...........................................CATACGGGA---GTGCAAAGTGTAC..............................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................AACAATTCTTGGCAGATCCTTT...........................................................................................................................................................................2211.00100000010000
.........................................................................GATTTAAAAACAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................3011.00100000010000
............................................................................................................................................................AAGAGAACAATTCTTGGCAGATC...............................................................................................................................................................................2311.00101000000000
....CCG--CCAAATGTTAAAGAAGTCTTCATCAA...............................................................................................................................................................................................................................................................................................................................2911.00100000010000
............................................................................TTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................CTTCGATTTAAAAACAGAGA.........................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................GACAG---GATTGGT----AAGG--GCTTTCAGATGG.................................................................................................................................................................................................................2811.00100000010000
.....................................................................CTTCGATTTAAAAACAGAGAAT.......................................................................................................................................................................................................................................................................2211.00100000010000
................................CAACTCTATTCCATACGGGA---GT.........................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................2411.00101000000000
..........................................................................ATTTAAAAACAGAGAATCCGAAATTGTGT...........................................................................................................................................................................................................................................................2911.00100000010000
...........................................................................................................CGACAG---GATTGGT----AAGG--GCTTTCAGAT...................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................TTCTTGGCAGATCCTTTAACTT......................................................................................................................................................................2211.00100000010000
.........................................................................................ATCCGAAATTGTGTGTTACGACAG---G.............................................................................................................................................................................................................................................2511.00100000010000
..........................................................................................................ACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2011.00100000010000
...........................................CATACGGGA---GTGCAAAGTGTACA.............................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................AACAGAGAATCCGAAATTGTGTGTT........................................................................................................................................................................................................................................................2511.00100000010000
........................................................................CGATTTAAAAACAGAGAATCCGAAATTGT.............................................................................................................................................................................................................................................................2911.00100000010000
.......................................................................................................................TGGT----AAGG--GCTTTCAGATGGCACAA............................................................................................................................................................................................................2511.00100000010000
.....................................................................................................GTGTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................TTTCAGATGGCACAAGGCCAAAAGA..................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................CAGAAAGGAGATGCCCCCATCGAGATC...............2711.00101000000000
..............................................................................................................CAG---GATTGGT----AAGG--GCTTTCA......................................................................................................................................................................................................................2111.00101000000000
...................................................................................................GTGTGTTACGACAG---GATTGGT----AA.................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................GTTACGACAG---GATTGGT----AA.................................................................................................................................................................................................................................1911.00101000000000
.............................................................................................................ACAG---GATTGGT----AAGG--GCTTTCAGAT...................................................................................................................................................................................................................2511.00100000010000
droEre2
GACGCCG--CCAAATGTTGAGGAAGTCTTTATCAACTCTATTCCATACGGGA---AAGCAAAGTGTACCCTTAGATTCAAAAGCAGGTCCTCTGAAATTGGGTGTTATGACAG---GATTGGT----AAGG--GCTTTCAGATGGCTCAAGGCCCGAAGAGGACAATTCTTGGCAGATCCTTTAACTGTAAGTACACATT-GT-GAC--------AC-TGCTGCA----------------------------------T-----------ACCTGTTCTATTT--TTTT---TTACTTCTCAGTGACCCGTCGGAATGAAGATCCTCCCATCGAGATCAGCCTTTTAAGATGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................GTTATGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2311.0010000010
..........................................CCATACGGGA---AAGCAAAGTGTAC..............................................................................................................................................................................................................................................................................................2311.0011000000
droSec2
GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGGATGCTAAATGCACAATTCGATTTAAAAACAGATACTCTGAAATTTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGTCCCAAGGCCAGAAGAGAAGTATTCTAGGCAGATCGTTTAACTGTAAGTACCCATG-GT-GAA--------AT-T-------------------------GGCCATGATCCTGATT---AC--------TTAC---------TTAT---CAACTTTTCAGTGACCCGCCAGAATGAAGATCCTCCCATCGCGATCAGCTTTTTAAGATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................CATACGGGCAGGATGCTAAATGCA...............................................................................................................................................................................................................................................................................................2411.0010100
...............................................................................................................................................GTCCCAAGGCCAGAAGAGA................................................................................................................................................................................................1911.0010100
.............................................................................................GAAATTTCGTGTTACGACAG---GATTGGT----...................................................................................................................................................................................................................................2711.0010010
.....CG--CCAAATGTTGAAGAAGTCTTTATC.................................................................................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................................................................................................................T-GAA--------AT-T-------------------------GGCCATGATCCTG.................................................................................................2011.0011000
............................................................................................................GACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................1911.0010100
..................................................................................................................................................................................................................................................................................................................................ATCCTCCCATCGCGATCAGC............2011.0011000
............................................................................................................................................................................................................................................................................................................................ATGAAGATCCTCCCATCGCGATCAG.............2511.0011000
.......................................ATTCCATACGGGCAGGATGCTAAATGCACA.............................................................................................................................................................................................................................................................................................3011.0010100
.....CG--CCAAATGTTGAAGAAGTCTTT....................................................................................................................................................................................................................................................................................................................................2311.0010100
.................................................................................................TTTCGTGTTACGACAG---GATTGGT----AAG................................................................................................................................................................................................................................2611.0010100
........................................................................................................TTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2211.0010100
............................................................................................................................................................................................................................................................................................................................ATGAAGATCCTCCCATCGCGA.................2111.0010100
..............................................................................................................................................................................................................................................................................................................................GAAGATCCTCCCATCGCGATC...............2111.0010100
..............................ATCAACTCTATTCCATACGGG...............................................................................................................................................................................................................................................................................................................2111.0011000
.............................................................................................................ACAG---GATTGGT----AAGG--GCTTTC.......................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................TCAGATGTCCCAAGGCCAGAAGAGAAG..............................................................................................................................................................................................2711.0010100
...........................................................................................................................................................GAAGAGAAGTATTCTAGGCA...................................................................................................................................................................................2011.0010100
droSim2
GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGGATTCTAAATGCACACTTCGATTTAAAAACAGATACTCTGAAATGTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTCAGATGTCCCAAGGCCAGAAGAGAACTATTCTTGGCAGATCGTTTAATTGTAAGTACACATG-GT-GAC--------AT-T-------------------------GGCCATGATCCTGATT---AC--------TTAC---------TTAT---CAACTTTTCAGTGACCCGCCAGAATGAAGATCCTCCTATCGCGATCAGCTTTTTAAGATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................ATACGGGCAGGATTCTAAAT..................................................................................................................................................................................................................................................................................................2012.00202000000000000000
..................................................................................................GTCGTGTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2611.00100010000000000000
.........................................................................................................................................................CAGAAGAGAACTATTCTTGGCAGAT................................................................................................................................................................................2511.00101000000000000000
..........................................CCATACGGGCAGGATTCTAAAT..................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................................CTTCGATTTAAAAACAGAT..........................................................................................................................................................................................................................................................................1911.00100010000000000000
.....................................................GGATTCTAAATGCACACTTCGA.......................................................................................................................................................................................................................................................................................2211.00100010000000000000
....................................................................................................CGTGTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2611.00101000000000000000
........................................................................CGATTTAAAAACAGATACTCTGAAATGT..............................................................................................................................................................................................................................................................2811.00101000000000000000
.............................TATCAACTCTATTCCATA...................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
........................................................................................ACTCTGAAATGTCGTGTTACGA....................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................ATTTAAAAACAGATACTCTGAAATGTC.............................................................................................................................................................................................................................................................2711.00100010000000000000
................................................................................AAACAGATACTCTGAAATGT..............................................................................................................................................................................................................................................................2011.00101000000000000000
.......................................................................................................................................TTTCAGATGTCCCAAGGCC........................................................................................................................................................................................................1911.00101000000000000000
..................GAAGAAGTCTTTATCAACTCTATT........................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................ATACTCTGAAATGTCGTGTTACGA....................................................................................................................................................................................................................................................2411.00100010000000000000
.......................................ATTCCATACGGGCAGGATTCT......................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..........................................................................................................................................................AGAAGAGAACTATTCTTGGC....................................................................................................................................................................................2011.00100010000000000000
.............................................TACGGGCAGGATTCTAAATGCACACTT..........................................................................................................................................................................................................................................................................................2711.00101000000000000000
...........................................................................................................................................AGATGTCCCAAGGCCAGC.....................................................................................................................................................................................................1820.50100000000000100000
dm3
GACGCCG--CCAAATGTTGAAGAAGTCTTTATCAACTCTATTCCATACGGGCAGCATGCTAAATGTACACTTCGATTTAAAAGCAGACACTCTGAAATTTCGTGTTACGACAG---GATTGGT----AAGG--GCTTTAAGATGGCCCAAGGCCAGAAGCGAACCATCCTTGGCAGATCCTTTAACTGTAAGTACACAAT-GT-GAC--------AT-T-------------------------GGCCATAATCCTGATT---AC--------TTAC---------TTTT---CTTCCTTTCAGTGACCCGCCAAAATGAAGATCCTCCCATTGAGATTAGCTTTTTAAGATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................TACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000
....................................................................................................CGTGTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000
..........................................................................................................ACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000
.....................................................................................................................................................................................................................................................................................................................CGCCAAAATGAAGATCCTCCC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................T-GAC--------AT-T-------------------------GGCCATAATCCTGA................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CATACGGGCAGCATGCTAAA...................................................................................................................................................................................................................................................................................................2011.0010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CTGAAATTTCGTGTTACGACAG---GATTGGT----...................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...........................................................................................................CGACAG---GATTGGT----AAGG--GCTT.........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATTCCATACGGGCAGCATGCT......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................ACGACAG---GATTGGT----AAGG--GCTTTAAGA....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTCCATACGGGCAGCATGCTAA....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................ATTGGT----AAGG--GCTTTAAGATG..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................ACTTCGATTTAAAAGCAGA...........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AACTGTAAGTACACAAT-GT-......................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTACACTTCGATTTAAAAGC..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGAAGCGAACCATCCTTGGCAGATCCT.............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................GTTACGACAG---GATTGGT----AAG................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATTTCGTGTTACGACAG---GATT..........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................ACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................TCGTGTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................GTGTTACGACAG---GATTGGT----AAGG--.............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................GTGTTACGACAG---GATTGGT----AAG................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CCAAGGCCAGAAGCGAACCATCCTT.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................ACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTACACTTCGATTTAAAAGCA.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................ATCAACTCTATTCCATACGGGCAGC...........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................GTTACGACAG---GATTGGT----AAGG--GC...........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................G---GATTGGT----AAGG--GCTTTAAGATGG.................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................ACGACAG---GATTGGT----AAGG--GCT..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................CAG---GATTGGT----AAGG--GCTCAG.......................................................................................................................................................................................................................2060.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TGAGATTAGCTTTTTAACT...1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droEug1
GACTCCA--CCAAATGTGGATGAAATCACTGTCAAATCTTTTCCATATGGGA---TGGCTGAGTGTACCTTCACCTTCAGAAATCGATCTTCCTTGATTGTGTTTGAAGACAGGAAGGCAGGG----AAAG--GTTTCCAGATGGTTCAAGGCCAGAAAAGAACTTTGCTTGGCAAAGCCTTTAACTGTAAGTATACTTT-TT-CAT--------AT-T---------------------------TTATAATTATTTTT---CCTTAACTAA-------------CT----TTTTTCATTTAGTAACTCATCGAAATGAAGATCCTCCAATTAAAATCAGCTTATTAAGATAASizeHit CountTotal NormTotal
No Reads
droBia1
GACGCCT--CCCAATGTGGACGAAGTCCATATCAGCTCCATACCATACGGGG---ATGCTAGGTGCAGCTTGACCTTTAAAAATCAATCTTCCAGCATCGAGTGTTCAGATAG---GATGGGT----AAGG--GCTTCCAGAAGGTTCAAGGTCAGAAGAAAACAGCGCTCGGCAGAACCTTCAATTGTAAGTAGAATGA-AGC-ACATATATAT---------ATTCCC--------------------------AGTCGTG------ATGGCTAT---------ATTT---TCATTTTTCAGTGACTCGTCGAAATAATGATCAACCCATTCAGATCAGATTTTTAAGATAASizeHit CountTotal NormTotal
No Reads
droTak1
GACGCCT--CCAAATGTGGACGAAATCCATATCAGCTCTATTCCATACGGGA---ATGCCAAGTGTAGCTTGACCTACAGAAATCAATCCTCCACTATATCGTGCTCAGATAG---GTTGGGC----CAGG--GCTTCCAGATGATTCAAGATCAGAAGAAAACTCTGCTTGGCAAAACCTTTAATTGTAAGTAGAATAT-TTC-ATT--------T-GG------------------------------------A--A--G------ATTTCCCTCTTAAAATG--AT---TTATTTTTCAGTAACCCGTCGGAATGAAGAATCCCCTATTCAGATCAAGCATTTAAGATAASizeHit CountTotal NormTotal
No Reads
droEle1
GACGCCG--CCAAACGTGGACGAGGTCTATATCAACTCGATTCAATATGGAA---GGGCTAAGTGCAGCCTGACTTTCAGGAACCATTCCAGCAAAATTGTCTGTTGGGACAG---TTTTGGT----CCTG--GTTTCCAGAAGGTTCAGGGTCAGCGGAGAACTTCGCTTGGCAGATCCTTTAACTGTAAGTTTGGAGT-TAC-ATACACATTC---------GTTCTC--------------------------A--A--G------TTACCTGC---------TTTT---CTCCTTTTCAGTGACCCATAAGAACGATGATCCGCCCATCGAAATCAGCTTCTTGAGTTAASizeHit CountTotal NormTotal
No Reads
droRho1
AACGCCC--CCAAACGTAGACGAGATCCATATCAATTCTATTCCATATGAAG---ATGCTAAGTGTAGCTTTACCATCAGGTTTCAATCCAGCGAAATTGTCTGTTGGGACAG---GTTTGGT----CCGG--GTTTCCAGATGGTTCAAGATCAGAGGAGGACGTTTCTTGGCAGATCCTTTAACTGTAAGTTGTGGGC-TTC-TTTCATATTC---------GTTCGT--------------------------A--A--G------TTACCTGT---------TTT----TTTCTTTTTAGTTACCCATAGGAACGAGGATCCCCCCATCGAAATCAGTTTCTTGAGATAASizeHit CountTotal NormTotal
No Reads
droFic1
CACGCCC--CCGAATGTGGATGAGGTTTACATCAATTCAATAATATATGGGG---ACGCCAGGTGTAGCTTGACATTCAAAAATCGGTCATCTGAAATTCACTGTTTTGACAG---GATTGGT----AAGG--GTTTCCAGATGACCCAAGGGCAGGAGAAAACCCTGCTTGGCAAGTCCTTTAACCGTAAGTGGAGTAT-ACC-AAACATATTC---------GTTCTT--------------------------T--G--A------CTAACTCT---------TTAT--TCCTTTTTTCAGTGACCCACAAGAGTGGAGATCCCCCAATTCAAATCAGTGTCTTAAGATAASizeHit CountTotal NormTotal
No Reads
droKik1
AATGCCG--CCAAATGTCAACGAAGTCCACGTTAACTATATTCGATATGGCG---ACAGTAAGTGCAGGTTTATTTTCAGTAACTTGTCTTCGGAAATGCAGTGCTCCATGCA---GTCTGGT----CCTG--GCTTTGAGATGGTTCAGAACCAAAAGAGAACCATGCTTGGCAAATCCTTTAATTGTACGTTGAAAGT-GAA-TATATTATAC---------TTTTTG--------------------------A--A--A------CTAACTCT---------TTCT-TTTCCGCCTCCAGTGACCCACGTAAGAGGAGATTCCCCGCAGCATATCAGCATAGTAAGATAASizeHit CountTotal NormTotal
No Reads
droAna3
GACCCCT--CCTAATGTGAACGAAGTGGAGGTCAACTTTATACGATATGGAA---TGAATAAGTGTCAGTGGATATTCCGAAACAAATACTCCGGGATGAACTGC---GGAAA---ATCTCTG----CAGA--GCTTCGAGATGGTTCAAGGAGGGAAAAGGACCTTATTGGGCACCTCCTTCAATTGTGAGTTATGGTGTTT--C---------AA-C-------------------------TTTCAAAACAATAATT---CC--------TCAT---------T-----TCCTTACTTTAGTTTCAGTTTCCAGAGAAGATCCGCCCAAGTACATTCAGATTTTGAGATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........CTAATGTGAACGAAGTGGAG....................................................................................................................................................................................................................................................................................................................................2012.002000002
.........CCTAATGTGAACGAAGTGGAGGT..................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................AAATACTCCGGGATGAACTGC---......................................................................................................................................................................................................................................................2111.001010000
............................................................................................................GGAAA---ATCTCTG----CAGA--GCTTCGAGAT...................................................................................................................................................................................................................2611.001000010
............AATGTGAACGAAGTGGAGGT..................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................GAATAAGTGTCAGTGGATATT.....................................................................................................................................................................................................................................................................................2111.001000010
..................................ACTTTATACGATATGGAA---TGAAT......................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
GACCCCA--CCCAATGTGGACGAAGTGGAGGTCAACTTTATACGATATGGAG---CAAATAACTGTCAGTGGATATTCTCCAATACCCACAACACACT---GAATTGTGGGAA---GTCTTTG----CAGA--GGTTCGAGATGGTTCAGGGTGGAAAGAGGACCATATTGGGCTCATCCTTCAATTGTAAGTTATAGCA-TCC-T---------C--------ATATCT--------------------------A--A--A------ATATCTCTAATC-----------TTCTGTGTTTAGTTTCAGTTACCAAAGGAGATCCACCCATCCATGTTCATATTTTGAGATAASizeHit CountTotal NormTotal
No Reads
dp5
GTCGCCG--CTGAATGTGGATGAGGTGCATGTAAACTATTTGCGCTATGCAC---GTAACACATGTCGCTGGGTCTTCGGGCCTAGATTCTCCAATATGGACTGCGGCGTCAG---ATCGGGGGCTCAAGGCACCTTCGAGATGGTTCAGGGCAAGAAGAGAACTTTGTTGGGAAGATCGTTCAATGGTGAGTCTATCAT-ACA-ATT--------C-AAAAGTGTAACTCCCTT---------------------------------------------AAAATTA--TGGAATCCTTTGCAGTGACTCTCGTGAAAGGTGATGAGCCTGTGTATATCAGTTATTTGGAATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................GCTATGCAC---GTAACACATGTCGCTGG..........................................................................................................................................................................................................................................................................................2612.0020200000000
.................................................CAC---GTAACACATGTCGCTGGG.........................................................................................................................................................................................................................................................................................2112.0020200000000
.........................................................................................................................................................AAGAAGAGAACTTTGTTGGGAAGATC...............................................................................................................................................................................2611.0010000000001
........................................................................................................................................................CAAGAAGAGAACTTTGTTGGG.....................................................................................................................................................................................2111.0010100000000
..........TGAATGTGGATGAGGTGCATT...................................................................................................................................................................................................................................................................................................................................2111.0010000001000
......................................................................................................................................CTTCGAGATGGTTCAGGGCA........................................................................................................................................................................................................2011.0010100000000
...............................................................TGTCGCTGGGTCTTCGGGCC...............................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................AACACATGTCGCTGGGTCT......................................................................................................................................................................................................................................................................................1911.0010100000000
......G--CTGAATGTGGATGAGGTGCA.....................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................GTCAG---ATCGGGGGCTCAAGGC..............................................................................................................................................................................................................................2111.0010000000001
.............................................................................................................................................................................................................ATT--------C-AAAAGTGTAACTCCCTT---------------------------------------------..........................................................................2111.0010100000000
..........................................................................................................................................................AGAAGAGAACTTTGTTGGG.....................................................................................................................................................................................1911.0010100000000
...........................................GCTATGCAC---GTAACACATGTCGCT............................................................................................................................................................................................................................................................................................2411.0010001000000
......................................................................................ATTCTCCAATATGGACTGCGGCGT....................................................................................................................................................................................................................................................2411.0010000000001
..................................................................................CTAGATTCTCCAATATGGACTGCGG.......................................................................................................................................................................................................................................................2511.0010000000001
.............................................................................................................TCAG---ATCGGGGGCTCAAGGT..............................................................................................................................................................................................................................2011.0010100000000
..................................................AC---GTAACACATGTCGCTGGG.........................................................................................................................................................................................................................................................................................2011.0010100000000
.....................GAGGTGCATGTAAACTATTTG........................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................GATGGTTCAGGGCAAGAAGAG.................................................................................................................................................................................................2111.0010100000000
....................................................................................................ACTGCGGCGTCAG---ATCGGGG.......................................................................................................................................................................................................................................2011.0010100000000
............................................................................................CAATATGGACTGCGGCGTCAG---..............................................................................................................................................................................................................................................2111.0010000001000
.............................................................CATGTCGCTGGGTCTTCGG..................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................TTGTTGGGAAGATCGTTCAAT........................................................................................................................................................................2111.0010100000000
.........................................................................................................................................CGAGATGGTTCAGGGCAAGA.....................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................GAGAACTTTGTTGGGAAGATC...............................................................................................................................................................................2111.0010100000000
......G--CTGAATGTGGATGAGGTGCATGTA.................................................................................................................................................................................................................................................................................................................................2511.0010000001000
droPer2
GTCGCCG--CTGAATGTGGATGAGGTGCATGTAAACTATTTGCGCTATGCAC---GTAACACATGTCGCTGGGTCTTCGGGCCTAGATTCTCCAATATGGACTGCGGCGTCAG---ATCGGGGGCTCAAGGCAACTTCGAGATGGTTCAGGGCAAGAAGAGAACTTTGTTGGGAAGATCGTTCAATGGTGAGTCTATCAT-ACA-ATT--------T-AAAAGTGTAACTCCCTT---------------------------------------------AAAATTA--TGGAATCCTTTGCAGTGACTCTCGTGAAAGGTGATGAGCCTGTGTATATCAGTTATTTGGAATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................GCAGTGACTCTCGTGAAAGGT.................................2113.003000003
.......................................................................................................................................................GCAAGAAGAGAACTTTGTTGGGA....................................................................................................................................................................................2312.002000002
.........................................................................................CTCCAATATGGACTGCGGC......................................................................................................................................................................................................................................................1912.002020000
............................................................................................................................................GATGGTTCAGGGCAAGAAGAGAACTT............................................................................................................................................................................................2612.002000002
......G--CTGAATGTGGATGAGGTGCAT....................................................................................................................................................................................................................................................................................................................................2212.002000002
.........................................................................................................................................................AAGAAGAGAACTTTGTTGGGA....................................................................................................................................................................................2112.002000002
.................................................................................................................................................................................................................................................................................................TGGAATCCTTTGCAGTGACTC............................................2111.001000001
........................................................................................................................................................................................................................................................................................................................GTGAAAGGTGATGAGCCTGTGTA...................2311.001000001
........................................................................................................................................................CAAGAAGAGAACTTTGTTGGGAAG..................................................................................................................................................................................2411.001000001
............................................................................................................................................GATGGTTCAGGGCAAGAAGAG.................................................................................................................................................................................................2111.001010000
......G--CTGAATGTGGATGAGGTGC......................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................GAAGAGAACTTTGTTGGGAA...................................................................................................................................................................................2011.001000001
......G--CTGAATGTGGATGAGGT........................................................................................................................................................................................................................................................................................................................................1811.001000001
.............................................................................................................................................................AGAGAACTTTGTTGGGAA...................................................................................................................................................................................1811.001100000
.....................................................................................................................................................GGGCAAGAAGAGAACTTTGTTGGGA....................................................................................................................................................................................2511.001000001
....................................................................................................ACTGCGGCGTCAG---ATCGGGG.......................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................................GGGCAAGAAGAGAACTTTGTTGGG.....................................................................................................................................................................................2411.001000001
.......................................................................................................................................................GCAAGAAGAGAACTTTGTTGGGAAGAT................................................................................................................................................................................2711.001000001
..............................................................ATGTCGCTGGGTCTTCGGGC................................................................................................................................................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................GATGAGCCTGTGTATATCAGTTAT.........2411.001000001
.......................................................GTAACACATGTCGCTGGGTCTT.....................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................CGAGATGGTTCAGGGCAAG......................................................................................................................................................................................................1911.001000001
............................ATGTAAACTATTTGCGCTATG.................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
AATGCCA--CCCAACGTTGAAGAGGTGGAAATTAATTATATACGCTATGGAG---ATAGCAAATGTCGTTGGATATATAAATCGCATTCATCATTTATGGATTGTGGTTATAGGAAATCGGGC----AAAA--AATTCGAAATGCTGCAGGGTAACAAAAGAACTTTGTTGGCCACAAATTTCAATGGTAGGTACAATTA-GA-AAATTATTTTG---------TTT----CGTTAAAATAATTAATTGTATTTTTGCTT---AA--------T------------------TTTTTTTTATAGTGACTCATCGCAAAGGCGATCCACCCATCTATATAAATTTGATGAACTAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................TATGGAG---ATAGCAAATGTC...............................................................................................................................................................................................................................................................................................1912.00201100
...........................................................................................CATTTATGGATTGTGGTTATAGGAAAT............................................................................................................................................................................................................................................2711.00100100
..............................ATTAATTATATACGCTATGGAG---A..........................................................................................................................................................................................................................................................................................................2311.00100100
...........CAACGTTGAAGAGGTGGAAA...................................................................................................................................................................................................................................................................................................................................2011.00100100
............................................................................................................TATAGGAAATCGGGC----AAAA--AATT.........................................................................................................................................................................................................................2311.00100100
...............................................................................................................................AAAA--AATTCGAAATGCTGCAGGGT.........................................................................................................................................................................................................2411.00100100
...................................................................................................GATTGTGGTTATAGGAAATCGGGC----AAA................................................................................................................................................................................................................................2711.00100100
..................................................AG---ATAGCAAATGTCGTTGGAT........................................................................................................................................................................................................................................................................................2111.00100100
..................................................................................................................................A--AATTCGAAATGCTGCAGGGT.........................................................................................................................................................................................................2111.00100100
.............................................................................................................ATAGGAAATCGGGC----AAAA--AATTC........................................................................................................................................................................................................................2311.00100001
.....................................................................................................................................AATTCGAAATGCTGCAGGGTA........................................................................................................................................................................................................2111.00100100
......................................................................................................................................ATTCGAAATGCTGCAGGGT.........................................................................................................................................................................................................1911.00100100
............................................CTATGGAG---ATAGCAAATGT................................................................................................................................................................................................................................................................................................1911.00100100
..................................................AG---ATAGCAAATGTCGTTGGATAT......................................................................................................................................................................................................................................................................................2311.00100100
.......................................................................................................................................TTCGAAATGCTGCAGGGTAACA.....................................................................................................................................................................................................2211.00100001
AATGCCA--CCCAACGTTGAAGAGGC........................................................................................................................................................................................................................................................................................................................................2411.00100100
..........................................................................................................GTTATAGGAAATCGGGC----AAAA--.............................................................................................................................................................................................................................2111.00100100
droVir3
AATGTCCCTCCCCAAGTGGACCAAGTGCTGGTCAAATACATTCGATTTGCGC---AGGGCAAATGCAGTTGGAATTTTCAATACAACAGCTCCAATGTGATTTGTACTTCTCC---GGCGAAT----CAGG--TCTTTGAACTAATCCAGGGCAAGCAACGGCGACTCTTGGGCAACAACTTTAATGGTATGTCTATTCA-CA-TAAC--------TTGAGCTTGGATCGAT-------------------------------------TTA--------AATCT-TTTC-CCTTTCGCTATAGTGACACTTCATAGGGGCGATCCGCCGATGTACATTAACGTGTTGAACTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................AATCCAGGGCAAGCAACGGCG..............................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................AGGGCAAATGCAGTTGGAAT.......................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
.....................................ACATTCGATTTGCGC---AGGGCA.....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010

Generated: 05/17/2015 at 10:06 PM