ID:

dya_257

 Coordinate:

2L:7674682-7674943 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-109.7 -109.6 -109.4

Flybase annnotation

CDS [Dyak\GE18521-cds]; exon [dyak_GLEANR_2309:1]; CDS [Dyak\GE18521-cds]; exon [dyak_GLEANR_2309:2]; intron [Dyak\GE18521-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------##################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAAAAAACAGCGCCCCGCGAAAAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTCTGCCGCTCCGCCACATCCGCCGGCTGCGCCGCCCGCGGAAATCCCGTCGCCAGCGCCCCCGCGCGTTCTAAGCGAAAAAAGGCGGCGCGGGAGAGAGTCGAGAGTCATTCGTTTGTCTCACTCCTGCGAGTGGGAAATTTGTTGTTCCACCTTGAGTGGGGCGACGGGCGGTGGGCGGGGGCGGTGCGTTTGTTTTGAATTTGCACGCGGTAACAACAAACTGACTCCGGATGCAAATCCGCGTACACTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
**************************************************((((((..((((((.(((((...((((((.(((((.((((.(((((...(((((.((((.((.......(((.......))).......)))))))))))..((((.((((..((......))))))))))))))).)))).....((((((((((((.....))))))))))))))))).))))))))))).)))..........(((((((..(((...((......))...)))..)))))))..)))...))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V120
male body		 V058
head
 M026
head
 V046
embryo
........................................................................................................TCGCCAGCGCCCCCGCGCGTTCT........................................................................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
................................ATGAACTCGGCAATCAAGGTAGGT.................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................ACGGGCGGGCGGCGGGGGC.......................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................TGCAAATCCGCGTACGTG....................................................... 18 3 20 0.15 3 3 0 0 0 0 0
...............................................................................................................................................................................................................................TGGCGGTGGGCGGGGCCGGT....................................................................................................................... 20 2 8 0.13 1 0 0 0 1 0 0
...................................................................................GCGCCGCCGCCGGAAACCCC................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................GCGGTGGGCGAGGGCGCT....................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GGGGCGTTGGGCTGGGGCGG........................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
.............................................TGAAGGTAGGTTCGGCCT........................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1
............................................................................................................................................................................................................................................................TTGAGTTGGAACGCGGTAA........................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................ATTCCCGGCCGCCGCACCG.................... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TGTTTTTTTGTCGCGGGGCGCTTTTTTTCCGGTACTTGAGCCGTTAGTTCCATCCAAGACGGCGAGGCGGTGTAGGCGGCCGACGCGGCGGGCGCCTTTAGGGCAGCGGTCGCGGGGGCGCGCAAGATTCGCTTTTTTCCGCCGCGCCCTCTCTCAGCTCTCAGTAAGCAAACAGAGTGAGGACGCTCACCCTTTAAACAACAAGGTGGAACTCACCCCGCTGCCCGCCACCCGCCCCCGCCACGCAAACAAAACTTAAACGTGCGCCATTGTTGTTTGACTGAGGCCTACGTTTAGGCGCATGTGAACGTCCACCCCCTCTATAAGTGCCGGCGGCCTGTCCGCAAGTCGTCTGACCCGCT
**************************************************((((((..((((((.(((((...((((((.(((((.((((.(((((...(((((.((((.((.......(((.......))).......)))))))))))..((((.((((..((......))))))))))))))).)))).....((((((((((((.....))))))))))))))))).))))))))))).)))..........(((((((..(((...((......))...)))..)))))))..)))...))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V052
head
 M043
female body
 V058
head
 V120
male body		 M056
embryo
............................................................................CGGCCGGCGCGGCGGGCCC........................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
........................................................ATAGGGCGAGGCGGTGTACGC............................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
.............................................................................................................................................CCGCGCCCTGCCTTAGCT........................................................................................................................................................................................................... 18 3 20 0.25 5 0 5 0 0 0
..................................................................................................................................................................................GAGGACACTCCCCCTTGA...................................................................................................................................................................... 18 3 20 0.20 4 0 0 0 4 0
..........................................................................................................................................CCACCGCGCCCTGTCTTAGCT........................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
...............................................................................CGGACGCGGCCGGCGCCTTC....................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0
..........................................................................................................................................CCACCGCGCCCTGTCTTAGC............................................................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0
.....................................................................................................................................................................................................ACAACAAGGTCTCACTCACC................................................................................................................................................. 20 3 9 0.11 1 0 0 1 0 0
..............................................................................................................................................CGCGCCCTGTCTTAGCTTT......................................................................................................................................................................................................... 19 3 20 0.10 2 1 1 0 0 0
...........................................................................GCCGCCGGCGCGGCGGGCCC........................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 1 0 0
.............................................................................................................................................CCGCGCCCTGTCTTAGCTT.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.................................................................GGAAGTGTAAGCGGCCGACG..................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:7674632-7674993 + dya_257 ACAAAAAAACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TGCCGCTCC-GCCACATCC-GCC---------------GGCTGCGCCGCCCGCG-G-AAA-TC----C--CGTCGCCAGCGCCCC-CGCGCG-----TTCTA--A---------------------------GCG------AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGG--GCG-----GTGGGCG-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCGT--------------ACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEre2 scaffold_4929:14166704-14167065 - ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GGCCGCTCC-GCCACAGCC-GCC---------------GGCAGCGCCGCCCGCG-A-CAA-TC----C--CGTCGCCAGCGCCCC-CTCCCA-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGG--GCG-----GTGGGCG-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droSec2 scaffold_3:6674899-6675260 + ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCT-GCCACATCC-GCC---------------GGCTGCTCCGCCCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGCC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droSim2 2l:10932318-10932679 + dsi_24029 ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCC-GCCACATCC-GCC---------------GGCTGCTCCGCCCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGCC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
dm3 chr2L:11278082-11278443 + ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCC-ACCACATCC-GCC---------------GGCAGCTCCGACCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEug1 scf7180000407253:709215-709575 + ACTAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AAGTGCTCA-GCCACATCC-GCC---------------GGCGACCACTCCCACT-A-AAA-TC----G--TACAACCAGAGGCCC-CA--CG-----TCGGA--G---------------------------TC-C-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------AAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGT--ACG-----GTGGGCG-----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGGAT--------------GCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGA
droBia1 scf7180000302422:1807306-1807671 - ACAAA-AAGCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AGGTGCTCC-GTCACGTCC-GCC---------------GGCGACCACGCCCCCG---AAA-TC----C--CGCCTCCAGCGCCCC-CGCGCG-----TCATA--A----------------------------CAA-----AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGG--TCG-----GTGGGCG-----------------GGG----GTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----G--------------CT--CC---------GGATGCAAA--------------------TCCGGGT---------CGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGA
droTak1 scf7180000415128:35184-35565 - ACAAA-AAGTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AGGTGCTCC-GCCACCTCC-GCC---------------GGCGACCACGCCCCCCGG-GAA-TA----C--CGCCTACTTCGCCCCGCGCGCC-----TTGCA--A----------------------------C-------AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGG--TCG-----GTGGGCGTGCGGG--GCGGGGG--GAG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC--------GGGATGCAAA--------------------TCCGCAT---------C---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEle1 scf7180000490644:211256-211673 - ACAAAAAAGCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAGCTGCTCC-GGCCGGTCC-GCC---------------GTCGACCACGCCCCCC-G-GCA-TA----C--CGCCGCCTGCGCCCC-TGGGCG-----CTGCAGCA---------------------------GCCACAAC-AAAAAAAGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCGTTCGCTCGTTCGCTCGTTTGTT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGG--ACG-----GTGGGCG-----------------G-GTGGTGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC-------------------AAACAC---------AAACTGAACCGAACCGAACTCCCGTCT--CC---------GGATGCAAA--------------------TCCGGTT--------------GCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droRho1 scf7180000779240:27547-27909 - ACAAAAAAGCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AGGTGCTCA-GCCCAGTCC-GCC---------------GGCGCCCACGCCCCCC-A-GAA-TC----C--CGCCGCCTGCGTCCC-CGAGCG-----CCGCA--A----------------------------CAA-----AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGG--GCG-----GTGGGCG-----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGGGT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGA
droFic1 scf7180000454100:23850-24218 + ACAAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-ACCTGCTCC-GACTGCTCC-GCC---------------GGCTACCACGCCCCCC-G-GAC-TA----C--CGCCCGCACCGTCTT-GGCGCG-----CCGCA--A----------------------------CAA---CAAAAAACGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGG--GTT-----GTGGGCCG----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------ACCCCAT-------------TACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGA
droKik1 scf7180000302677:523994-524385 + GCAAAAAAGCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CGGTCTCCC-AACCGGTCC-GCC---------------GGCGACGGC-----------AA-CACTTATTCC------CGCCACCC--------------------TG----GCAGCCGGAG--CTCGGT-CCGCGG-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGG--GCG-----GTGAGCG-----------------G--------GGATGCGTTTGTTTTGAATTTGCAC-GCGCGCCGAG-------AGCAACAACAATGCCAATAACAATAACAATAACAAACCA----A--------------TT--CC---------ACATCCGAA--------------------TCCCTGT--------------GCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGA
droAna3 scaffold_12916:4179913-4180297 - GGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AGGTGCTCC-GCCCGGCCC-GCC---------------TTCAAGG-G-----------AACATCTTATTCCGCCGCCGGAACTCC-------AATAA---------------------------CTCGTACCGC-A-----AAAAAAGGCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCG------TCTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGGTGTCGGTAGA---GGCG-----------------GCG----GGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGCA------------ACAACAAC----------AACTG----T--------------CTAACC---------GATTGCA----------------------TCCGAAT---------CACGGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droBip1 scf7180000396737:599934-600318 + GGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AGGTGCTCC-GCCCGGCCC-GCC---------------AGCAAGG-T-----------AACATCTTTTTCCGCCGCCGAAACTCC-------AATTA---------------------------CCCGTACCGC-A-----AAAAAAGGCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCG------TCTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGGTGTTGGCAGA---GGCG-----------------GCG----GGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGCA------------ACAACAAC----------AACTG----G--------------CTAACC---------GATTGCA----------------------TCCGAAT---------CATGGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
dp5 4_group3:6702293-6702677 + GCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACG---TA-GTCATGTC--G-------TCTG-CCCCC---AC-----------GTGAAA-CTCCAAATCT------AACGCCCT--------------------GG----GCGGCATTTG--ATTTGT---GCGG-----GAAAGTGGCGGCACGG---TGCCTC---------------AAGTGTCATTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-----------------------GGCG------------------------GAGGGCGCGTATGTTTTGAATTTGCAAAGCACGTA-------------------AATGCCAACAACAAC----------AGCTG----C--------------------CGGCAGACGAGTTGCAAT-----------------TAC-CCGCAG---------C---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droPer2 scaffold_1:8150854-8151238 + GCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACG---CA-GTCATGTC--G-------TCTG-CCCCC---AC-----------GTGAAA-CTCCAAATCT------AACGCCCT--------------------GG----GCGGCATTTG--ATTTGT---GCGG-----GAAAGTGGCGGCACGG---TGCCTC---------------AAGTGTCATTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-----------------------GGCG------------------------GAGGGCGCGTATGTTTTGAATTTGCAAAGCACGTA-------------------AATGCCAACAACAAC----------AGCTG----C--------------------CGGCAGACGAGTTGCAAT-----------------TAC-CCGCAG---------C---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droWil2 scf2_1100000004521:4484172-4484568 - dwi_1246 ACAAAAAAATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AGAGCTTCT-TAGTAG------------TATTTTCATCAATTGACTA----------AAA-TA----TTTT------AACGCTTT-T------------------------GCGGTATTCA--CTTTGT---GCGG--GA-AAATAAAGTGGCGCGAGCGGGAGTC---------------GAGC--------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACA--GCAATTTGTTGTTCCACGATG--ATAGAGG--A---------------GTGGGCGGGTGGGTGGTTAAGGGAG-A----GAGGGCGCGTTTGTTTTGAATTTGCAAAACAGGCG-GCAGAA---------------------AACAAC----------A--------A--------------CT--CT---------GCAGGGAGATAAAAACGTATCCTTATTAC-TTATGT---------T---TG---------------------------TTCTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGA
droVir3 scaffold_12963:2237765-2238093 - dvi_10115 -----------------------------------GGCCATGAATTCGGCAACAAAGGTATGTTT-AATT---CA-GTCGCAGCTAATT-----------------------------------GG-TT----G--CGTCTCAAGCGGCTT-TCTAAA-----TCACA---AA----GCGGCATTTT--ATTT------------------------GTTCGGAAAATTGTC---GGCTGTGCGCC-T-C---TGTCAG--------------------TT-CGTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTGC---------------------------TTT-----ATGGGGC-----------------G-A----GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGCA----------AGCA------------CGAACAAC----------AGCTG----C--------------------CA------------------CAAATGCATCTAA---A-ATTTTGTC--------CAATTGTC-------------------------------TGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGA
droMoj3 scaffold_6500:27450675-27450873 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------TT-CATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCAT---------------------------------------------------------------GGGGCGCGTTTGTTTTGAATTTGCAACGCATGCTAAG---GCTAAACA------------TAAACAA----------AAACTC----G--------------AT--TT---------GAATGCACG--------------------TATATAA----ATAT-T---TG---------------------------TTGTTTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGA
droGri2 scaffold_15126:1320844-1321214 - AA------------------------------GTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAG---CAAAACGCATTTAACCGATTG-CAA-CCC--GTACGC---------------------------GCCGCCGGA-----------------TGGCA---AAGAATGCCCCAATTGAGTTTTGT---GCGG-----GAAAA-GTGTGCGGCTGTGTGCGTC---------------T-CTGTCAT-----------------------AT-CGCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGG--GCG-----GTGA---------------------------GAGGGCGCGTTTGTTTTGAATTTGCACCGCATGCCAAA---CAACAGCA------------ACAACAAC----------AACTC----A--------------------AAACAAAACAGCTGAAAA--------------------TA--TAACACACAAATTAT-TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
ACAAAAAAACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TGCCGCTCC-GCCACATCC-GCC---------------GGCTGCGCCGCCCGCG-G-AAA-TC----C--CGTCGCCAGCGCCCC-CGCGCG-----TTCTA--A---------------------------GCG------AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGG--GCG-----GTGGGCG-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCGT--------------ACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................TCGCCAGCGCCCC-CGCGCG-----TTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
.......................................ATGAACTCGGCAATCAAGGTAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAA--------------------TCCGCGT--------------ACG-------------------------------TG.......................................................18200.15303000000000
droEre2
ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GGCCGCTCC-GCCACAGCC-GCC---------------GGCAGCGCCGCCCGCG-A-CAA-TC----C--CGTCGCCAGCGCCCC-CTCCCA-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGG--GCG-----GTGGGCG-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGATTTTCACGGCCGCCG.........................2312.0022000000
droSec2
ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCT-GCCACATCC-GCC---------------GGCTGCTCCGCCCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGCC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................CCCGCGAA--AAAAGGCCATGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
droSim2
ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCC-GCCACATCC-GCC---------------GGCTGCTCCGCCCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGCC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................CGG--GCG-----GTGGGCA-----------------G-G----GGCGGACT...........................................................................................................................................................................................................................................................2312.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................................................GCGG--GCG-----GTGGGCA-----------------G-G----GGCGGAAA...........................................................................................................................................................................................................................................................2412.00200000001000010000
................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGC................................................................................................................................................................................................................................................................2711.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGG--GCG-----GTGGGCA-----------------G-G----GGCG...............................................................................................................................................................................................................................................................2811.00100000000000001000
............................................CTCGGCAATCAAGGTAGGTTT-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACAGGCGTTCAGCAGACTG.....2411.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................TGGGT--TGGCGG--GCG-----GTGGGC............................................................................................................................................................................................................................................................................................2011.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................G--GCG-----GTGGGCA-----------------G-G----GGCGGTGCG..........................................................................................................................................................................................................................................................2211.00100000000000010000
dm3
ACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AGCCGCTCC-ACCACATCC-GCC---------------GGCAGCTCCGACCGCG-T-TGA-TC----C--CGTCGCCAGCGCCTC-CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGG--GCG-----GTGGGCA-----------------G-G----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGCAT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................GCGG--GCG-----GTGGGCA-----------------G-G----GGC................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000
.......................................ATGAACTCGGCAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000100000000000000000
.....................................CCATGAACTCGGCAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAAAGGCCATGAACTCGGCAATCAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCG-----GTGGGCA-----------------G-G----GGCGGTGCG..........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000
............CGC------CCCGCGAA--AAAAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AGGCGGCGCGGGAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGG--GCG-----GTGGGCA-----------------G-........................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTGCAC-GCGG-----T.............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GTAGGTTC-AGCCGCTCC-ACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AACTCGGCAATCAAGGTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................CGCGCG-----TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GTTGTTCCACCGTG--AGTGGGC--CG................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ACTCGGCAATCAAGGTAGGTTC-AGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................GCGGCGCGGGAGAGAGTC---------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCCGCCGGACAGGCGTTCAGC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAAC.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGG--GCG-----GTGGGCA-----------------G-G----...................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGG--GCG-----GTGGGA............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CCAGCGCCTC-CGCGCG-----TTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAAGGCCATGAACTCGGCAATCAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGACAGGCGTTCAGCAGACT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCG--------------------TT-TGTCTCACTCCTG...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCG--------------------TT-TGTCTCACTCCTGCGAG...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CGG--GCG-----GTGGGCA-----------------G-G----GGCG...............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------CTTGCAGGTGGGGGAGA........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGG--GCG-----GTGGGC............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................TGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACAGGCGTTCAGCAGACT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CCAGCGCCTC-CGCGCG-----TTGCA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------AAACTG----A--------------CT--CC---------GGATGC.......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AATCAAGGTAGGTTC-AGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................G--GCG-----GTGGGCA-----------------G-G----GGCGGTGCA..........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................CGCGAA--AAAAGGCCATGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CATGAACTCGGCAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGTTC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GCA-----------------G-G----GGCGGTGCGTTTGTT....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGG...1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TTGCA--A---------------------------GCGA-----GAAAAAGGCGGCGCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGG--GCG-----GTGGGCA-----------------..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAGGCCATGAACTCGGCAATCAAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCACGGCCGCCGGACA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................G--GCG-----GTGGGCA-----------------G-G----GGCGGTG............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................GTAGGTTC-AGCCGCTCC-AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATGAACTCGGCAATCAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGACAGG...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GCAATCAAGGTAGGTTC-AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGGC..2011.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAGATATTCACGGCCGCC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGACTGGG...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCG-----GTGGGCA-----------------G-G----GGCGGTG............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................CGAA--AAAAGGCCATGAACTCGGCAATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAGCGC------CCCGCGAA--AAAAGGCCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGCCGCCGGACAGGCGTTCAGCAGA........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GCTCC-ACCACATCC-GCC---------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
ACTAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AAGTGCTCA-GCCACATCC-GCC---------------GGCGACCACTCCCACT-A-AAA-TC----G--TACAACCAGAGGCCC-CA--CG-----TCGGA--G---------------------------TC-C-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------AAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGT--ACG-----GTGGGCG-----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGGAT--------------GCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
droBia1
ACAAA-AAGCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AGGTGCTCC-GTCACGTCC-GCC---------------GGCGACCACGCCCCCG---AAA-TC----C--CGCCTCCAGCGCCCC-CGCGCG-----TCATA--A----------------------------CAA-----AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGG--TCG-----GTGGGCG-----------------GGG----GTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----G--------------CT--CC---------GGATGCAAA--------------------TCCGGGT---------CGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droTak1
ACAAA-AAGTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AGGTGCTCC-GCCACCTCC-GCC---------------GGCGACCACGCCCCCCGG-GAA-TA----C--CGCCTACTTCGCCCCGCGCGCC-----TTGCA--A----------------------------C-------AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGG--TCG-----GTGGGCGTGCGGG--GCGGGGG--GAG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC--------GGGATGCAAA--------------------TCCGCAT---------C---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
ACAAAAAAGCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAGCTGCTCC-GGCCGGTCC-GCC---------------GTCGACCACGCCCCCC-G-GCA-TA----C--CGCCGCCTGCGCCCC-TGGGCG-----CTGCAGCA---------------------------GCCACAAC-AAAAAAAGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCGTTCGCTCGTTCGCTCGTTTGTT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGG--ACG-----GTGGGCG-----------------G-GTGGTGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC-------------------AAACAC---------AAACTGAACCGAACCGAACTCCCGTCT--CC---------GGATGCAAA--------------------TCCGGTT--------------GCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAAAAGCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AGGTGCTCA-GCCCAGTCC-GCC---------------GGCGCCCACGCCCCCC-A-GAA-TC----C--CGCCGCCTGCGTCCC-CGAGCG-----CCGCA--A----------------------------CAA-----AAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGG--GCG-----GTGGGCG-----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------TCCGGGT--------------GCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
ACAAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-ACCTGCTCC-GACTGCTCC-GCC---------------GGCTACCACGCCCCCC-G-GAC-TA----C--CGCCCGCACCGTCTT-GGCGCG-----CCGCA--A----------------------------CAA---CAAAAAACGGCGGCGCGGGAGAGAGTC---------------GAGAGTCGTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGG--GTT-----GTGGGCCG----------------GGG----GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG-----TAACAAC----------------------------------AAACTG----A--------------CT--CC---------GGATGCAAA--------------------ACCCCAT-------------TACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
GCAAAAAAGCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CGGTCTCCC-AACCGGTCC-GCC---------------GGCGACGGC-----------AA-CACTTATTCC------CGCCACCC--------------------TG----GCAGCCGGAG--CTCGGT-CCGCGG-----GAAAAAGGCGGCGCGGGAGAGAGTC---------------GAGAGTCATTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGG--GCG-----GTGAGCG-----------------G--------GGATGCGTTTGTTTTGAATTTGCAC-GCGCGCCGAG-------AGCAACAACAATGCCAATAACAATAACAATAACAAACCA----A--------------TT--CC---------ACATCCGAA--------------------TCCCTGT--------------GCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
droAna3
GGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AGGTGCTCC-GCCCGGCCC-GCC---------------TTCAAGG-G-----------AACATCTTATTCCGCCGCCGGAACTCC-------AATAA---------------------------CTCGTACCGC-A-----AAAAAAGGCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCG------TCTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGGTGTCGGTAGA---GGCG-----------------GCG----GGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGCA------------ACAACAAC----------AACTG----T--------------CTAACC---------GATTGCA----------------------TCCGAAT---------CACGGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----------AACTG----T--------------CTAACC---------GATT.........................................................................................................................................2012.002000002
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGT................2311.001010000
droBip1
GGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AGGTGCTCC-GCCCGGCCC-GCC---------------AGCAAGG-T-----------AACATCTTTTTCCGCCGCCGAAACTCC-------AATTA---------------------------CCCGTACCGC-A-----AAAAAAGGCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCG------TCTTCG--------------------TT-TGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGGTGTTGGCAGA---GGCG-----------------GCG----GGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGCCGGG-------AGCA------------ACAACAAC----------AACTG----G--------------CTAACC---------GATTGCA----------------------TCCGAAT---------CATGGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
dp5
GCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACG---TA-GTCATGTC--G-------TCTG-CCCCC---AC-----------GTGAAA-CTCCAAATCT------AACGCCCT--------------------GG----GCGGCATTTG--ATTTGT---GCGG-----GAAAGTGGCGGCACGG---TGCCTC---------------AAGTGTCATTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-----------------------GGCG------------------------GAGGGCGCGTATGTTTTGAATTTGCAAAGCACGTA-------------------AATGCCAACAACAAC----------AGCTG----C--------------------CGGCAGACGAGTTGCAAT-----------------TAC-CCGCAG---------C---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................CAACAAAGGTAGGTGC-AACG---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCACGGCCGCCGGA.......................1911.0010100000000
droPer2
GCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACG---CA-GTCATGTC--G-------TCTG-CCCCC---AC-----------GTGAAA-CTCCAAATCT------AACGCCCT--------------------GG----GCGGCATTTG--ATTTGT---GCGG-----GAAAGTGGCGGCACGG---TGCCTC---------------AAGTGTCATTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-----------------------GGCG------------------------GAGGGCGCGTATGTTTTGAATTTGCAAAGCACGTA-------------------AATGCCAACAACAAC----------AGCTG----C--------------------CGGCAGACGAGTTGCAAT-----------------TAC-CCGCAG---------C---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ACAAAAAAATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AGAGCTTCT-TAGTAG------------TATTTTCATCAATTGACTA----------AAA-TA----TTTT------AACGCTTT-T------------------------GCGGTATTCA--CTTTGT---GCGG--GA-AAATAAAGTGGCGCGAGCGGGAGTC---------------GAGC--------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACA--GCAATTTGTTGTTCCACGATG--ATAGAGG--A---------------GTGGGCGGGTGGGTGGTTAAGGGAG-A----GAGGGCGCGTTTGTTTTGAATTTGCAAAACAGGCG-GCAGAA---------------------AACAAC----------A--------A--------------CT--CT---------GCAGGGAGATAAAAACGTATCCTTATTAC-TTATGT---------T---TG---------------------------TTCTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................GTGGGCGGGTGGGTGGTT................................................................................................................................................................................................................................................................................18314.3343038725
............................................................................................................................................................................................................................................................................................................................................................................GCGGGTGGGTGGTTAAGGGAG-A----G..................................................................................................................................................................................................................................................................2311.00100010
....................ATTT-------GATACGCCATGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
........................................................................................................................................................................................................................................................................................................................................................................GTGGGCGGGTGGGTGGTA................................................................................................................................................................................................................................................................................1870.29200101
droVir3
-----------------------------------GGCCATGAATTCGGCAACAAAGGTATGTTT-AATT---CA-GTCGCAGCTAATT-----------------------------------GG-TT----G--CGTCTCAAGCGGCTT-TCTAAA-----TCACA---AA----GCGGCATTTT--ATTT------------------------GTTCGGAAAATTGTC---GGCTGTGCGCC-T-C---TGTCAG--------------------TT-CGTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTGC---------------------------TTT-----ATGGGGC-----------------G-A----GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGCA----------AGCA------------CGAACAAC----------AGCTG----C--------------------CA------------------CAAATGCATCTAA---A-ATTTTGTC--------CAATTGTC-------------------------------TGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGGTCAAGCATTCA.............1911.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................AA-----TCACA---AA----GCGGCATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000010000000000000000000
....................................................................................TAATT-----------------------------------GG-TT----G--CGTCTCAAGCGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGATTTTCACGGC..............................1811.001000001000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------TT-CATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCAT---------------------------------------------------------------GGGGCGCGTTTGTTTTGAATTTGCAACGCATGCTAAG---GCTAAACA------------TAAACAA----------AAACTC----G--------------AT--TT---------GAATGCACG--------------------TATATAA----ATAT-T---TG---------------------------TTGTTTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AA------------------------------GTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAG---CAAAACGCATTTAACCGATTG-CAA-CCC--GTACGC---------------------------GCCGCCGGA-----------------TGGCA---AAGAATGCCCCAATTGAGTTTTGT---GCGG-----GAAAA-GTGTGCGGCTGTGTGCGTC---------------T-CTGTCAT-----------------------AT-CGCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGG--GCG-----GTGA---------------------------GAGGGCGCGTTTGTTTTGAATTTGCACCGCATGCCAAA---CAACAGCA------------ACAACAAC----------AACTC----A--------------------AAACAAAACAGCTGAAAA--------------------TA--TAACACACAAATTAT-TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:08 PM