ID:

dya_25

 Coordinate:

2R:8904878-8904935 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.9 -27.6

Flybase annnotation

intron [Dyak\GE13473-in]; utr3 [utr3_minus_2846]

No Repeatable elements found

Sense Strand Reads

GAACAAGCTTCTAAATAACATTTTTCATGGCGTTACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGGTGACCTGCGAAATACACAGGGATATGTAAAAAAGACAGTGCTTT

***********************************..(((((((((.((((((...((((((((((.(((((.........)))))....))))))))))...)))))).)))))).)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 M043

female body

 V058

head

 V046

embryo

 M026

head

 V052

head

 V120

male body		 SRR1275484

Male prepupae		 SRR1275488

Male larvae
......................................................................................CCCCTTGTTGCAAACCTCACGC.................................................. 22 0 1 17535.00 17535 9440 7211 253 232 218 155 24 1 1
......................................................................................CCCCTTGTTGCAAACCTCACG................................................... 21 0 1 6807.00 6807 1534 4285 312 342 105 189 40 0 0
.......................................................................................CCCTTGTTGCAAACCTCACGC.................................................. 21 0 1 757.00 757 51 696 3 6 1 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGC.................................................. 22 1 1 554.00 554 554 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCAC.................................................... 20 0 1 456.00 456 222 198 8 1 17 6 4 0 0
..................................................GTGTGATTTGTAGCAAAGTGAT...................................................................................... 22 0 1 423.00 423 95 90 27 23 85 11 92 0 0
......................................................................................CCACTTGTTGCAAACCTCACGC.................................................. 22 1 1 406.00 406 406 0 0 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCACGC.................................................. 22 1 1 382.00 382 382 0 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCACG................................................... 20 0 1 378.00 378 16 349 4 8 0 1 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGT.................................................. 22 1 1 323.00 323 72 151 34 32 3 9 22 0 0
......................................................................................CCCCTTGTGGCAAACCTCACGC.................................................. 22 1 1 273.00 273 0 273 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCT................................................. 23 1 1 251.00 251 159 73 5 3 6 4 1 0 0
..................................................GTGTGATTTGTAGCAAAGTGA....................................................................................... 21 0 1 185.00 185 13 51 36 13 19 5 48 0 0
......................................................................................CCCCTTGTGGCAAACCTCACG................................................... 21 1 1 184.00 184 0 183 1 0 0 0 0 0 0
......................................................................................CCCCTTGTAGCAAACCTCACGC.................................................. 22 1 1 125.00 125 0 125 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCC................................................. 23 0 1 121.00 121 106 6 0 2 7 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCACG................................................... 21 1 1 83.00 83 82 0 1 0 0 0 0 0 0
......................................................................................CTCCTTGTTGCAAACCTCACGC.................................................. 22 1 1 83.00 83 83 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACAC.................................................. 22 1 1 78.00 78 75 2 0 0 1 0 0 0 0
......................................................................................TCCCTTGTTGCAAACCTCACGC.................................................. 22 1 1 76.00 76 70 2 1 1 0 1 1 0 0
......................................................................................CCCCTTGTAGCAAACCTCACG................................................... 21 1 1 76.00 76 0 76 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACG................................................... 21 1 1 75.00 75 74 0 1 0 0 0 0 0 0
.........................................................................................CTTGTTGCAAACCTCACGC.................................................. 19 0 1 74.00 74 30 43 0 1 0 0 0 0 0
......................................................................................CCCCTTGTCGCAAACCTCACGC.................................................. 22 1 1 65.00 65 19 46 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGATA..................................................................................... 23 0 1 63.00 63 17 7 1 5 28 0 5 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGA.................................................. 22 1 1 61.00 61 29 26 1 2 1 2 0 0 0
........................................................................................CCTTGTTGCAAACCTCACGC.................................................. 20 0 1 61.00 61 17 42 1 0 0 0 1 0 0
..........................................................................................TTGTTGCAAACCTCACGC.................................................. 18 0 1 60.00 60 26 33 0 1 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACG................................................... 21 1 1 58.00 58 55 0 1 1 0 1 0 0 0
......................................................................................CCCCTTGTTGAAAACCTCACGC.................................................. 22 1 1 50.00 50 46 2 1 1 0 0 0 0 0
.....................................................................................CCCCCTTGTTGCAAACCTCACGC.................................................. 23 1 1 48.00 48 34 14 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTG........................................................................................ 20 0 1 47.00 47 6 13 9 6 0 3 10 0 0
......................................................................................CCCCTTGTTGCACACCTCACGC.................................................. 22 1 1 47.00 47 37 0 8 1 0 1 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCA................................................. 23 1 1 47.00 47 19 27 0 1 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGATT..................................................................................... 23 1 1 47.00 47 21 7 1 6 9 0 3 0 0
........................................................................................CCTTGTTGCAAACCTCACG................................................... 19 0 1 41.00 41 5 36 0 0 0 0 0 0 0
......................................................................................CCCCTTTTTGCAAACCTCACGC.................................................. 22 1 1 40.00 40 37 2 0 0 1 0 0 0 0
......................................................................................CCCCTTGTCGCAAACCTCACG................................................... 21 1 1 39.00 39 3 33 2 1 0 0 0 0 0
...................................................TGTGATTTGTAGCAAAGTGAT...................................................................................... 21 0 1 38.00 38 7 15 7 0 1 2 6 0 0
..................................................GGGTGATTTGTAGCAAAGTGAT...................................................................................... 22 1 1 37.00 37 36 0 0 0 0 0 1 0 0
......................................................................................CCCCTTGTTGCAAAACTCACGC.................................................. 22 1 1 30.00 30 29 1 0 0 0 0 0 0 0
......................................................................................CCTCTTGTTGCAAACCTCACGC.................................................. 22 1 1 28.00 28 27 0 0 1 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCA..................................................... 19 0 1 27.00 27 18 3 1 1 3 1 0 0 0
......................................................................................CCCCTTGCTGCAAACCTCACGC.................................................. 22 1 1 27.00 27 19 4 4 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACTTCACGC.................................................. 22 1 1 27.00 27 27 0 0 0 0 0 0 0 0
......................................................................................CCGCTTGTTGCAAACCTCACGC.................................................. 22 1 1 25.00 25 25 0 0 0 0 0 0 0 0
.....................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................. 23 0 1 25.00 25 6 19 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACT................................................... 21 1 1 24.00 24 8 11 4 0 0 0 1 0 0
......................................................................................GCCCTTGTTGCAAACCTCACGC.................................................. 22 1 1 23.00 23 2 21 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCAC.................................................... 19 0 1 23.00 23 2 21 0 0 0 0 0 0 0
......................................................................................CCCCTGGTTGCAAACCTCACGC.................................................. 22 1 1 23.00 23 22 0 0 0 0 1 0 0 0
.........................................................................................CTTGTTGCAAACCTCACG................................................... 18 0 1 22.00 22 7 12 0 2 0 0 1 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGG.................................................. 22 1 1 22.00 22 1 21 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCTT................................................ 24 2 1 21.00 21 13 7 0 0 0 0 1 0 0
...................................................TGTGATTTGTAGCAAAGTGATA..................................................................................... 22 0 1 20.00 20 6 5 0 3 1 1 4 0 0
......................................................................................CCCCTTGTTGCAAACCTCCCG................................................... 21 1 1 20.00 20 0 1 15 0 2 2 0 0 0
.....................................................................................TCCCCTTGTTGCAAACCTCACG................................................... 22 0 1 20.00 20 7 13 0 0 0 0 0 0 0
......................................................................................TCCCTTGTTGCAAACCTCACG................................................... 21 1 1 19.00 19 15 1 2 1 0 0 0 0 0
......................................................................................CCCCTTGTTGCACACCTCACG................................................... 21 1 1 18.00 18 8 0 5 4 0 1 0 0 0
......................................................................................CGCTTTGTTGCAAACCTCACGC.................................................. 22 2 1 18.00 18 18 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACA................................................... 21 1 1 17.00 17 4 9 3 0 1 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACTC.................................................. 22 1 1 17.00 17 14 0 2 1 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCCCGC.................................................. 22 1 1 15.00 15 1 0 9 0 1 4 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCACGCT................................................. 22 1 1 15.00 15 3 11 1 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGT......................................................................................... 19 0 1 15.00 15 0 5 0 0 1 2 7 0 0
.....................................................................................CCCCCTTGTTGCAAACCTCACG................................................... 22 1 1 14.00 14 4 9 0 1 0 0 0 0 0
..................................................GGGTGATTTGTAGCAAAGTGATT..................................................................................... 23 2 1 14.00 14 14 0 0 0 0 0 0 0 0
.....................................................................................ACCCCTTGTTGCAAACCTCACGC.................................................. 23 1 1 14.00 14 1 13 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGAC...................................................................................... 22 1 1 14.00 14 13 0 0 0 1 0 0 0 0
......................................................................................CCCCTTGTTGCAACCCTCACG................................................... 21 1 1 13.00 13 0 0 10 3 0 0 0 0 0
......................................................................................CCCCTTGTTGCCAACCTCACG................................................... 21 1 1 13.00 13 0 0 6 5 0 2 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCATGC.................................................. 22 1 1 13.00 13 11 2 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCAC.................................................... 20 1 1 13.00 13 13 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCCAACCTCACGC.................................................. 22 1 1 12.00 12 1 0 4 2 0 5 0 0 0
......................................................................................CTCCTTGTTGCAAACCTCACG................................................... 21 1 1 12.00 12 10 0 1 0 0 1 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGTT................................................. 23 2 1 12.00 12 4 7 0 0 0 0 1 0 0
.....................................................................................GCCCCTTGTTGCAAACCTCACGC.................................................. 23 1 1 12.00 12 0 12 0 0 0 0 0 0 0
..................................................GGGTGATTTGTAGCAAAGTGATA..................................................................................... 23 1 1 11.00 11 11 0 0 0 0 0 0 0 0
......................................................................................ACCCTTGTTGCAAACCTCACGC.................................................. 22 1 1 11.00 11 2 7 0 1 1 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACC................................................... 21 1 1 11.00 11 11 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAAACCTCACGT.................................................. 22 2 1 11.00 11 0 11 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTACAAACCTCACGC.................................................. 21 1 1 10.00 10 0 10 0 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAAACCTCAC.................................................... 20 1 1 10.00 10 0 10 0 0 0 0 0 0 0
......................................................................................GCCCTTGTTGCAAACCTCACG................................................... 21 1 1 10.00 10 3 7 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCACGCA................................................. 22 1 1 9.00 9 1 8 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAGCCTCACGC.................................................. 22 1 1 9.00 9 3 4 1 0 1 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTTACGC.................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCGCGC.................................................. 22 1 1 9.00 9 6 3 0 0 0 0 0 0 0
.......................................................................................CCCCTTTTGCAAACCTCACGC.................................................. 21 2 1 9.00 9 8 1 0 0 0 0 0 0 0
.....................................................................................GCCCCTTGTTGCAAACCTCACG................................................... 22 1 1 9.00 9 0 9 0 0 0 0 0 0 0
..................................................GGGTGATTTGTAGCAAAGTGA....................................................................................... 21 1 1 9.00 9 9 0 0 0 0 0 0 0 0
.........................................................................................CGTGTTGCAAACCTCACGC.................................................. 19 1 1 9.00 9 9 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGCTGCAAACCTCACG................................................... 21 1 1 9.00 9 3 5 0 1 0 0 0 0 0
......................................................................................TGCCTTGTTGCAAACCTCACGC.................................................. 22 2 1 9.00 9 9 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGATGCAAACCTCACGC.................................................. 22 1 1 8.00 8 7 1 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCAC.................................................... 20 1 1 8.00 8 8 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGGTGCAAACCTCACGC.................................................. 22 1 1 8.00 8 2 1 2 1 0 2 0 0 0
......................................................................................CCCCTTGTTTCAAACCTCACGC.................................................. 22 1 1 8.00 8 2 5 1 0 0 0 0 0 0
......................................................................................CCCCTTTTTGCAAACCTCACG................................................... 21 1 1 8.00 8 8 0 0 0 0 0 0 0 0
......................................................................................CCCTTTTTTGCAAACCTCACGC.................................................. 22 2 1 8.00 8 8 0 0 0 0 0 0 0 0
..................................................GGGTGATTTGTAGCAAAGTGAC...................................................................................... 22 2 1 7.00 7 7 0 0 0 0 0 0 0 0
...................................................................................ATCCCCCTTGTTGCAAACCTCACGC.................................................. 25 3 1 7.00 7 7 0 0 0 0 0 0 0 0
...............................GTTACTGGGCATTTTGGGT............................................................................................................ 19 0 1 7.00 7 3 1 0 2 0 0 1 0 0
.......................................................................................CCCTTGTTGCAAACCTCACGCC................................................. 22 0 1 7.00 7 5 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGAAAACCTCACG................................................... 21 1 1 7.00 7 5 0 0 2 0 0 0 0 0
......................................................................................CCCCCTGTTGCAAACCTCACGC.................................................. 22 1 1 7.00 7 5 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAACCCTCACGC.................................................. 22 1 1 7.00 7 1 1 4 0 0 1 0 0 0
......................................................................................CTCTTTGTTGCAAACCTCACGC.................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCTCGC.................................................. 22 1 1 6.00 6 6 0 0 0 0 0 0 0 0
......................................................................................CCTCTTGTTGCAAACCTCACG................................................... 21 1 1 6.00 6 5 1 0 0 0 0 0 0 0
......................................................................................CCCCTTCTTGCAAACCTCACGC.................................................. 22 1 1 6.00 6 3 1 1 0 1 0 0 0 0
......................................................................................CCCCTTGTTGCACAACTCACGC.................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTCCAAACCTCACGC.................................................. 21 1 1 6.00 6 0 6 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCACGT.................................................. 21 1 1 6.00 6 0 5 0 0 0 0 1 0 0
......................................................................................CCCCTTGGTGCAAACCTCACG................................................... 21 1 1 6.00 6 2 0 4 0 0 0 0 0 0
....................................................................................TCCCCCTTGTTGCAAACCTCACGC.................................................. 24 2 1 6.00 6 6 0 0 0 0 0 0 0 0
...................................................TGTGATTTGTAGCAAAGTGA....................................................................................... 20 0 1 6.00 6 0 5 0 0 1 0 0 0 0
......................................................................................CCCCTTGTTGTAAACCTCACGC.................................................. 22 1 1 5.00 5 4 0 0 1 0 0 0 0 0
........................................................................................CCTTGTTGCAAACCTCACGCTT................................................ 22 2 1 5.00 5 2 3 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTACAAACCTCACGC.................................................. 22 1 1 5.00 5 3 0 0 0 0 2 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGCC................................................. 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................CCCCTCGTTGCAAACCTCACGC.................................................. 22 1 1 5.00 5 4 1 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGAAAACCTCACGC.................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCGAACCTCACG................................................... 21 1 1 5.00 5 1 1 2 0 0 1 0 0 0
......................................................................................CCCCTTGTTGCAAACTTCACG................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCAA................................................ 24 1 1 5.00 5 1 4 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCGCG................................................... 21 1 1 5.00 5 1 2 1 1 0 0 0 0 0
......................................................................................ACCCTTGTTGCAAACCTCACG................................................... 21 1 1 5.00 5 0 4 1 0 0 0 0 0 0
......................................................................................CCCCTTGTTTCAAACCTCACG................................................... 21 1 1 5.00 5 0 2 2 1 0 0 0 0 0
.......................................................................................GCCTTGTTGCAAACCTCACG................................................... 20 1 1 5.00 5 0 5 0 0 0 0 0 0 0
......................................................................................CCCCGTGTTGCAAACCTCACGC.................................................. 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACATCACG................................................... 21 1 1 5.00 5 0 0 3 2 0 0 0 0 0
......................................................................................CCCCATGTTGCAAACCTCACGC.................................................. 22 1 1 5.00 5 4 1 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCCCACGC.................................................. 22 1 1 5.00 5 3 1 0 0 0 1 0 0 0
......................................................................................CCCCTTGTTGCAAACCTC...................................................... 18 0 1 5.00 5 1 3 1 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCGCACGC.................................................. 22 1 1 5.00 5 4 0 1 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACCC.................................................. 22 1 1 5.00 5 3 2 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGATATG................................................................................... 25 0 1 5.00 5 0 3 0 1 0 0 1 0 0
......................................................................................CCCCTTGTAGCAAACCTCACGT.................................................. 22 2 1 4.00 4 0 4 0 0 0 0 0 0 0
........................................................................................CCTTGTTGCAAACCTCACGCC................................................. 21 0 1 4.00 4 3 1 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACGCC................................................. 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CACCTTGTTGCAAACCTCACGC.................................................. 22 1 1 4.00 4 1 2 1 0 0 0 0 0 0
......................................................................................CCCCTTGTTCCAAACCTCACGC.................................................. 22 1 1 4.00 4 1 1 1 0 0 0 1 0 0
.....................................................................................CGCCCTTGTTGCAAACCTCACGC.................................................. 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCACACCTCACGC.................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CCCCTGGTTGCAAACCTCACG................................................... 21 1 1 4.00 4 2 0 2 0 0 0 0 0 0
.......................................................................................CCCTTGTTACAAACCTCACG................................................... 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCACGCT................................................. 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.....................................................................................ACCCCTTGTTGCAAACCTCACG................................................... 22 1 1 4.00 4 0 4 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTAACGC.................................................. 22 1 1 4.00 4 1 2 1 0 0 0 0 0 0
......................................................................................CCGCTTGTTGCAAACCTCACG................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTTACG................................................... 21 1 1 4.00 4 1 2 0 0 0 1 0 0 0
......................................................................................TCCCTTGTTGCAAACCTCACGCT................................................. 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAAACTCACGC.................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGT.................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
........................................................................................CCCTTTTGCAAACCTCACGC.................................................. 20 2 1 4.00 4 4 0 0 0 0 0 0 0 0
......................................................................................CCACTTATTGCAAACCTCACGC.................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGATC..................................................................................... 23 1 1 4.00 4 2 0 0 0 2 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACGT.................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.....................................................................................TCCCCTTGTTGCAAACCTCACGT.................................................. 23 1 1 4.00 4 1 3 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAGACCTCACG................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0 0
..............................CGTTACTGGGCATTTTGGGT............................................................................................................ 20 0 1 4.00 4 1 1 0 1 0 0 1 0 0
........................................................................................CCTTGTTGGAAACCTCACGC.................................................. 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGGAAACCTCACGC.................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTAGCAAACCTCACGG.................................................. 22 2 1 3.00 3 0 3 0 0 0 0 0 0 0
...................................................TGCGATTTGTAGCAAAGTGATA..................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................GTGTGATTTGTATCAAAGTGAT...................................................................................... 22 1 1 3.00 3 0 0 1 0 0 2 0 0 0
......................................................................................CCCCTTGATGCAAACCTCACG................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0 0
..................................................GTGCGATTTGTAGCAAAGTGAT...................................................................................... 22 1 1 3.00 3 2 0 0 0 1 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACGA.................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCCCACG................................................... 21 1 1 3.00 3 0 0 1 1 0 1 0 0 0
......................................................................................CCCCTTGTTACAAACCTCACG................................................... 21 1 1 3.00 3 1 1 1 0 0 0 0 0 0
......................................................................................CCCCTTGTAGCAAACCTCAC.................................................... 20 1 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACGCT................................................. 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGA.................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTTCAAACCTCACGC.................................................. 21 1 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCACAC.................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCACACGC.................................................. 22 1 1 3.00 3 1 1 1 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACAC.................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCATTTGTTGCAAACCTCACG................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................CCCCTGTTGCAAACCTCACGC.................................................. 21 1 1 3.00 3 2 1 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCAGGC.................................................. 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAGCCTCACG................................................... 21 1 1 3.00 3 0 1 0 1 0 1 0 0 0
......................................................................................CCCCTTGTTGCATACCTCACGC.................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0
..................................................GTGTGCTTTGTAGCAAAGTGA....................................................................................... 21 1 1 3.00 3 0 0 1 1 0 0 1 0 0
........................................................................................CCTTGTTGCAAACCTCAC.................................................... 18 0 1 3.00 3 1 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCAGG................................................... 21 1 1 3.00 3 0 3 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAG.......................................................................................... 18 0 1 3.00 3 1 0 0 0 2 0 0 0 0
......................................................................................CCCCTTGTTGCATACCTCACG................................................... 21 1 1 3.00 3 0 0 0 2 0 1 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGCT...................................................................................... 22 1 1 3.00 3 0 0 2 1 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACAC.................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................CGCTTGTTGCAAACCTCACGC.................................................. 21 1 1 3.00 3 2 1 0 0 0 0 0 0 0
.....................................................................................CCCTCTTGTTGCAAACCTCACGC.................................................. 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................CCCCTTTTGCAAACCTCACG................................................... 20 2 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAAACTCACG................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGG....................................................................................... 21 1 1 3.00 3 0 0 0 0 3 0 0 0 0
......................................................................................CCCCTTCTTGCAAACCTCACG................................................... 21 1 1 3.00 3 0 0 2 1 0 0 0 0 0
..................................................GTGTGATTAGTAGCAAAGTGAT...................................................................................... 22 1 1 3.00 3 0 2 1 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCAC.................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCGAACCTCACGC.................................................. 22 1 1 3.00 3 0 2 1 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAAACCTCACGCT................................................. 23 2 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGCT................................................. 23 2 2 3.00 6 6 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAATCTCACGC.................................................. 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0
...................................................TGTGATTTGTAGCAAAGTGATT..................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0
........................................................................................CCCCTTTGCAAACCTCACGC.................................................. 20 3 16 2.19 35 34 1 0 0 0 0 0 0 0
......................................................................................CCATTTGTTGCAAACCTCACGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCACACCTCACGCC................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGGTGCGAACCTCACG................................................... 21 2 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................GGCTGATTTGTAGCAAAGTGAT...................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................TCCCCTTGTTGCAAACCTCAC.................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................TTGTGATTTGTAGCAAAGTGATT..................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCCT................................................ 24 1 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................................................CGACTTGTTGCAAACCTCACG................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................ACCTTGTTGCAAACCTCACG................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTATTGCAAACCTCACGC.................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................GCCTTGTTGCAAACCTCACGC.................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGATG..................................................................................... 23 1 1 2.00 2 0 0 0 1 1 0 0 0 0
.....................................................................................TCCCCTTGTTGCCAACCTCACGC.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................TGTGATTTGTGGCAAAGTGAT...................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
....................................................................................AACCCCTTGTTGCAAACCTCACGC.................................................. 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAAACTCATGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TGCCTTGTTGCAAACCTCACG................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................CCCTGTTGCAAACCTCACGC.................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GAGTGATTTGTAGCAAAGTGAT...................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0
..................................................GAGTGATTTGTAGCAAAGTGA....................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0
......................................................................................CCCCTTGTAGCAGACCTCACG................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCATGT.................................................. 22 2 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAGACCTCACGC.................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTGCAAACCTCACT................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCTTTGTTGCAAACCTCACGCC................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................TCCCTTGTTGCAAACCTCAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGTGATTCGTAGCAAAGTGAT...................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCAAGC.................................................. 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0
......................................................................................CCCCTTGTTGCTAACCTCACGC.................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0
......................................................................................CCCCTCGTTGCAAACCTCACG................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTGTGATTGGTAGCAAAGTGATA..................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTCTGATTTGTAGCAAAGTGATT..................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAAACTCTCG................................................... 21 2 1 2.00 2 1 0 0 1 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGGGAT...................................................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0
......................................................................................CCCCTTGTTGCACACCTCAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CGCTTTGTTGCAAACCTCACG................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GCGTGATTTGTAGCAAAGTGAT...................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0
......................................................................................CCACTTCTTGCAAACCTCACGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTTTTGCAAACCTCAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACTC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAAACCTCACGG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................GTTACTGGGCATTTTGGGC............................................................................................................ 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CACCTTGTTGCAAACCTCACG................................................... 21 1 1 2.00 2 0 0 0 1 0 1 0 0 0
...................................................TGCGATTTGTAGCAAAGTGAT...................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................CCTTGTTGCAAACCTCACGCA................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCGTTGTTGCAAACCTCACGC.................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGATGCAAACCGCACGA.................................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGCAAACCTCACGCA................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................CCCTAGTTGCAAACCTCACGC.................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGGGATTTGTAGCAAAGTGA....................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACATCACGC.................................................. 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACTTCTCGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................GCCTTTGTTGCAAACCTCACGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAAACTCACTC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................CCCCTGTTGCAAACCTCACG................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTCGCAAACCTCAC.................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................................................................................TCCCCTTGGTGCAAACCTCACGC.................................................. 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0
........................................................................................CGTTGTTGCAAACCTCACGC.................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................GCCCCCTTGTTGCAAACCTCACGC.................................................. 24 2 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCATG................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGCTTT............................................... 25 3 1 2.00 2 0 2 0 0 0 0 0 0 0
........................................................................................CTTTGTTGCAAACCTCACGC.................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................CCCTTGTTTCAAACCTCACG................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................GATTCCCCTTGTTGCAAACCTCACGC.................................................. 26 3 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTGTGATTGGTAGCAAAGTGAT...................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAAACCTCACGAC................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCACACCTCACG................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................TGTGTGATTTGTAGCAAAGTGA....................................................................................... 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCTCACTC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCAACCCTCCCG................................................... 21 2 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAAACCTCACGA.................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CCCCTTGGTGCATACCTCACGC.................................................. 22 2 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAAACTCACGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................CGCCTTGTTGTAAACCTCACGC.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................CTCCCCTTGTTGCAAACCTCACGC.................................................. 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................................................GTCCCCTTGTTGCAAACCTCACG................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTGTGATTTGTAGCAAAGTGAA...................................................................................... 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0
........................................................................................GCTTGTTGCAAACCTCACGC.................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................CTCTTTGTTGCAAACCTCACG................................................... 21 2 2 1.50 3 3 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTGGCAGACCTCACGC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................CCCCATTTTGCAAACCTCACG................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................CCCCTTGTAGCAAACCTCACGCC................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................TCCCATGTTGCGAACCTCACGC.................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................CCCCCTTGTTGCAAACCTCACGCC................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................GTTACTGGGCCTTTTGGGT............................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................GTGATTTGTAGCAAAGTGA....................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................GTACCCCTTGTTGCAAACCTCACGC.................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTGCATACCTCCCG................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................CCAGCCCCTTGTTGCAAACCTCACGC.................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................CCCGTGTTGCAAACCTCACGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................CGCCATGTTGCAAACCTCACGC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................CCCCTTGTTCCAAACCTCAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTGTGATTTGAAGCAAAGTGAT...................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................CATCCCCTTGTTGCAAACCTCACG................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................CCCTTTGCTGCAAACCTCACGC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................CCACTTGTTGCAAACCCCACGC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTGTTCGAAGATTTATTGTAAAAAGTACCGCAATGACCCGTAAAACCCACACACTAAACATCGTTTCACTATACATAAACTAGTAGGGGAACAACGTTTGGAGTGCGGTTTCCACTGGACGCTTTATGTGTCCCTATACATTTTTTCTGTCACGAAA

***********************************..(((((((((.((((((...((((((((((.(((((.........)))))....))))))))))...)))))).)))))).)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V058

head
..................................................................................................................................GTCCCTATACATTTTTTCGGGA...... 22 3 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2R:8904828-8904985 + dya_25 confident GAACAA-GCT-TCTAAA---------------------------------TAACATTTTTC--------------------------------------ATGGCGTT-----------ACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGAC-CTG---CG-AAATACA-CAGGG------ATA----TGTAA------AAAA-G-------------A-------CAGTG-CT-TT
droEre2 scaffold_4845:17747725-17747882 + der_31 confident AAACAA-GCT-TCAGAA---------------------------------AAACATATTTG--------------------------------------ATGACGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGAC-CTG---CG-AAATACA-CAGTG------TTA----TGGAA------AAAA-G-------------A-------AAGTG-CT-CT
droSec2 scaffold_1:5591412-5591558 - dse_24 confident GAACAA-GCT-GCTAGA---------------------------------GAACATTTTTG--------------------------------------ATGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---CG-AAATACA-CAGTG------TTT----TGGAA------CA----------------------------------AA
droSim2 2r:8750767-8750913 - dsi-mir-988 Known_mirbase GAACAA-GCT-ACTAGA---------------------------------GAACATTTTTG--------------------------------------ATGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---AG-AAATACA-CAGTG------ATA----TGAAA------CA----------------------------------AA
dm3 chr2R:8046354-8046500 - dme-mir-988 Known_mirbase GAACTG-GTT-TCAAAA---------------------------------GAACATAGTTG--------------------------------------ACGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---CG-AAATACA-CAGTG------GTA----TGGAA------AA----------------------------------AA
droEug1 scf7180000409462:417373-417536 + TAATTT-TAT-AA---A--T----------------------CCGA------ATA-----AATTC----C--------------------------------TCGGC-----------AATGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGATGAG-TTCCA-----TAAACAACCC-G--A---------------ATAGGAAAAG-GCA------AG---TGATCATATTTTT-CT-CT
droBia1 scf7180000302292:862261-862418 - GGATAC-GAT-TGAAAA---------------------------------AAATGTCTTCAACTC----T--------------------------------TCAGT-----------ACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-TCCG--TT---AAACATCAC-CAA-ACG-----AAT----ATCA--A-A------------G---G----------GA-CG-CT
droTak1 scf7180000415260:195628-195773 + CAATAT-CTC-AA----TA-------------------------------G---------GATT-------------------------TGAATAAAT-ATAGCAGT-----------TCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAA-TCCG-----AAATACAAC-GCCAA-ATG-----AT--------------------------------------------AT-TC
droEle1 scf7180000491214:3580552-3580712 - GTTTAA-GATCAG----TTT----------------------GCACACGAG---------GATTT----T--------------------------------CCGGT-----------TCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-ACCTAT-G---AAACAACAT-T--A---------------GTT---AGA------------G---TGATGTATTGGTG-CT-TT
droRho1 scf7180000779932:485531-485684 - AAAGAA-TAT-C--AGT---------------------------------GAACAAATTGGATTG----T--------------------------------CCGAC-----------TCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-TCCCAC-A---AAACAACAT-T--A---------------ATTA--A-A------------G---TG-------GTAAATG-TT
droFic1 scf7180000453809:442546-442690 - TTATAA-AAT-AA----TTG----------------------GTGTA-GGG---------GAT-------------------A---------------------TT------AAAGTATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGA-TCCCAC-A---TAACATCAA-----ATG----------------------------------------------AAAT-AA-GC
droKik1 scf7180000302367:405225-405365 + GAGCTGAAAT--C----TTG----------------------GCATT-TGT---------GAC-------------------TA--------------------TCA-----------AGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGAT--GATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGAATCCTA-----TCCACATCAA-------------------------------G-------------G-------AAGTG-CA-TC
droAna3 scaffold_13266:2579689-2579833 + dan_27 confident AATGGA--ATCAG----TAA----------------------GTGG-----------------------------------------------------AAAGGTGT-----------ACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGCT-TTCCA-----ACGGCAACAT--------------------ATCA----------GCAAGG-----A--------AGAC-TAAGA
droBip1 scf7180000396759:1640703-1640858 + CTAAGG-GTT-GA----ATA----------------------GTGAA-CAG-----GTTT--------------------------------------------TTT-----------ACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGAT--AATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-ATCCAT-A---TAGCAACGT-T--A---------------TTA---AGGT--CACCAAAG-----T-------GAATG-AT-TT
dp5 3:405624-405786 - dps-mir-988 Known_mirbase GAAAAA-GTT-TTTATA-----------TCCCGGATAACTGGGTATC-CAG---------GA--ATCCA-----------------------------------GAC-----------TGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAA-TCCCAC-A--CCTACA-CTCTC------ATATAAT--GAT---------------------------------------CA-TG
droPer2 scaffold_2:590049-590231 - dpe_339 confident AGATAA-GAA-AA----AAGTTGTTATATCCCGGATAACTGGGTATC-CAG---------GA--ATCCA-----------------------------------GAC-----------TGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAA-TCCCAC-A--CCTACA-CTCTC------AGATAAT--GAT------------CA------TGTGAA-------CGAAA-AC-AA
droWil2 scf2_1100000004954:3254337-3254508 + dwi_37 confident AAAGAT-TCT-A---AA---------------------------------TAT-----------C----T--------TAAGTA-CATTTGTTTAGTTAAAACGAAT-----------TGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGTC-TCC------AAATACATCAGT-----CGATA----TCCAG------AA--T-C-------AG---T-------TTGCA-AT-TT
droVir3 scaffold_12875:19840334-19840496 + dvi-mir-988 Known_mirbase GAGCGT-GAT-TTA-----T----------------------GCAC---AGA-----TCA---TGTCCA-----------------------------------GAGTGTGTAATATATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC-TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGGC-GC-----ATTTAACCAGCAA-T--A---------------TAA---AGATT-CA------TG---TG-------T-----A-AA
droMoj3 scaffold_6496:6364070-6364232 - dmo_36 confident GGATAA-AGA-CT-----AT----------------------TCGG---AG----------------------TGTTATATCTATC-------------AT--GTGT----------ATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGAC-GC-----ATAGCAGCAACAA-T--T---------------GAA---AGATA-TT------CG---A-------TTAAA-CT-TA
droGri2 scaffold_15245:18189020-18189184 + dgr_15 confident GTTTCT-TCT-TTTAAA---------------------------------GCATA--TTAAATTC----CGAGT-------------------------GTGGTATT-----------TCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--TTGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGGC-GC-----ATCTAAGCAACAA-T--A---------------TTA---ATATA-CA------AG---TT-------TCCACTA-TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GAACAA-GCT-TCTAAA---------------------------------TAACATTTTTC--------------------------------------ATGGCGTT-----------ACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGAC-CTG---CG-AAATACA-CAGGG------ATA----TGTAA------AAAA-G-------------A-------CAGTG-CT-TTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................22117535.001753521872119440232155253241010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2116807.00680710542851534342189312400000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211757.0075716965160300000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201456.004561719822216840000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................221423.00423859095231127920000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201378.0037803491681400000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221323.0032331517232934220000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................231251.0025167315934510000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................211185.0018519511313536480000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................231121.001217610620000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19174.00740433010000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................23163.00632871750150000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22161.00611262922100000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20161.00610421700110000
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18160.00600332610000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................20147.00470136639100000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................23147.00470271910000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................23147.0047972160130000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19141.0041036500000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................21138.0038115702760000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19127.0027331811100000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................23125.0025019600000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21124.0024011800410000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19123.0023021200000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18122.0022012720010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................22122.0022021100000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................24121.0021071300010000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................22120.002015631040000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22120.0020013700000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21117.001719400300000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................22115.0015011300100000
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................19115.001515002070000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAC.......................................................................................................................................22114.0014101300000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23112.001207400010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................21111.0011001100000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2219.00908100000000
........................................................................................................GTT-----------ACTGGGCATTTTGGGT.............................................................................................................................................................1917.00701320010000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2217.00702500000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................2116.00605000010000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................2016.00615000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--T.............................................................................................2215.00503200000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................1815.00503100100000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2515.00503010010000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................2114.00401300000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATC......................................................................................................................................2314.00420200000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGT.................................................................................................2314.00403100000000
.......................................................................................................CGTT-----------ACTGGGCATTTTGGGT.............................................................................................................................................................2014.00401110010000
..............................................................................................................................................................................CCTTGTTGCAAACCTCAC...................................................................................................1813.00302100000000
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................1813.00320100000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGG........................................................................................................................................2113.00330000000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATT......................................................................................................................................2213.00301200000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................2112.00202000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--T.............................................................................................2412.00201100000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................2312.00210010000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACT..................................................................................................2012.00202000000000
........................................................................................................GTT-----------ACTGGGCATTTTGGGC.............................................................................................................................................................1912.00200200000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA--..............................................................................................2112.00202000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--TT............................................................................................2512.00202000000000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGA........................................................................................................................................2212.00200100100000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................2212.00201001000000
........................................................................................................................................GTGATTTGTAGCAAAGTGA........................................................................................................................................1911.00100100000000
.........................................................................................................................................................................CATCCCCTTGTTGCAAACCTCACG..................................................................................................2411.00101000000000
droEre2
AAACAA-GCT-TCAGAA---------------------------------AAACATATTTG--------------------------------------ATGACGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGAC-CTG---CG-AAATACA-CAGTG------TTA----TGGAA------AAAA-G-------------A-------AAGTG-CT-CTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................22111100.001110078252239169106726890
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2117009.00700952363761401441179960
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................221915.009151397361035934420
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211677.006776461424380
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................211500.005004702742052170
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201416.004163923240150
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221408.0040814810226591630
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................201355.00355370150792240
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201295.00295205394215300
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................23184.0084374212020
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGA........................................................................................................................................22180.0080602022500
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................23165.0065715324250
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21162.006254000080
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................23161.0061401131060
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................19156.0056901032140
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................21155.00551616017150
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20149.0049381100000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19146.004629210860
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................23139.0039101211690
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19136.003625900110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................23132.003230100010
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19126.002622100030
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22125.002519401010
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................20123.002380002130
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22123.002316420010
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTG.........................................................................................................................................21122.002220208100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21120.002017100020
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................22119.00198101720
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21119.00199100360
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18118.001814200020
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19117.001717000000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................23117.00172020670
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18116.001613201000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................21114.001413100000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................23112.001211100000
.........................................................TTTG--------------------------------------ATGACGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................28111.001100000011
......................................................................................................................................GTGTGATTTGTAGCAAAGTGT........................................................................................................................................21110.00100010630
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................1819.0090010260
.......................................................................................................................................TGTGATTTGTAGCAAAGTG.........................................................................................................................................1916.0066000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................2216.0063001110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2216.0065100000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................2016.0066000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2515.0051000400
......................................................................................................................................GTGTGATTTGTAGCAAAGTT.........................................................................................................................................2015.0052000120
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2215.0054010000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................2315.0050001130
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2414.0041000120
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................2114.0043100000
........................................................................................................................................GTGATTTGTAGCAAAGTGAT.......................................................................................................................................2013.0033000000
........................................................................................................................................GTGATTTGTAGCAAAGTGA........................................................................................................................................1913.0032000010
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACGC.................................................................................................2413.0032000010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................2313.0032010000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2113.0033000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGG.................................................................................................2113.0033000000
........................................................................................................GGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1913.0030000030
............................................................G--------------------------------------ATGACGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................2512.0020000002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2212.0022000000
.......................................................................................................CGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................2012.0020000110
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACT..................................................................................................2012.0022000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................2112.0021100000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--A.............................................................................................2212.0022000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--T.............................................................................................2212.0022000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--A.............................................................................................2412.0020100010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................2412.0022000000
.........................................................................................................GT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1812.0020000200
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2012.0021100000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--..............................................................................................2112.0022000000
.........................................................................................................................................TGATTTGTAGCAAAGTGAT.......................................................................................................................................1912.0022000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2212.0022000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCA....................................................................................................1812.0022000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................2412.0022000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................2012.0020000020
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--T.............................................................................................2212.0022000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTTT........................................................................................................................................2112.0020000110
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATT......................................................................................................................................2212.0022000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAG.......................................................................................................................................2111.0011000000
droSec2
GAACAA-GCT-GCTAGA---------------------------------GAACATTTTTG--------------------------------------ATGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---CG-AAATACA-CAGTG------TTT----TGGAA------CA----------------------------------AASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2114137.004137246165675936
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................2213734.003734277547397515
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................2211339.001339250588143358
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................211840.0084014931790284
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221685.00685119101114351
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................201629.0062912315312341
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211252.002522311614
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201210.0021015412827
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201210.0021018121314
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................231141.0014121662628
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................211107.0010730202532
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................23171.00711830617
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................19157.0057420429
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19154.00541341324
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................22148.00481413156
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21142.004239012
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................20140.0040118318
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22136.003633201
........................................................................................................GGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................19133.0033131910
......................................................................................................................................GTGTGATTTGTAGCAAAGTGT........................................................................................................................................21129.0029215012
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19120.002018011
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21120.002010244
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................23117.001713112
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................23116.001614011
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23115.00156207
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20115.001514001
.......................................................................................................................................TGTGATTTGTAGCAAAGTG.........................................................................................................................................19113.001311101
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22111.00119110
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18111.00118111
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19110.00109001
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................23110.00102224
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................1819.0099000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................2319.0099000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................1919.0097020
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................2318.0080215
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2118.0087001
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................2218.0086110
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGA........................................................................................................................................2216.0062121
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2516.0060411
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................1816.0062004
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2215.0055000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA--..............................................................................................2115.0055000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2214.0043100
........................................................................................................................................GTGATTTGTAGCAAAGTGAT.......................................................................................................................................2014.0043001
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2314.0044000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................2114.0043001
........................................................................................................................................GTGATTTGTAGCAAAGTGA........................................................................................................................................1913.0031011
......................................................................................................................................GTGTGATTTGTAGCAAAGTAT........................................................................................................................................2113.0031200
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2113.0033000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATT......................................................................................................................................2213.0031101
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAAA....................................................................................................................................2513.0031110
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTG.........................................................................................................................................2113.0030102
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2213.0033000
......................................................................................................................................GTGTGATTTGTAGCAAAGTC.........................................................................................................................................2013.0030003
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2213.0032001
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2213.0032001
.........................................................................................................GT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1813.0030030
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................2012.0021001
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2412.0021100
.......................................................................................................CGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................2012.0021001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--T.............................................................................................2412.0021010
........................................................................................................................................GTGATTTGTAGCAAAGTG.........................................................................................................................................1812.0022000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................2412.0021100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................2412.0021010
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................2112.0022000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACAT.................................................................................................2212.0022000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACT..................................................................................................2012.0022000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--A.............................................................................................2212.0020002
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................1812.0021001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................2012.0022000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGTT--..............................................................................................2212.0022000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2312.0022000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................2311.0010010
....................................................................................................................................GTGTGTGATTTGTAGCAAAGTGT........................................................................................................................................2311.0010001
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--TT............................................................................................2311.0011000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATC......................................................................................................................................2311.0010100
........................................................................................................................................GTGATTTGTAGCAAAGTGATA......................................................................................................................................2111.0011000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACC..................................................................................................2011.0011000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCC--A.............................................................................................2111.0011000
......................................................................................................................................GTGTGATTTGTAGCAAAGTT.........................................................................................................................................2011.0010100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................2411.0011000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA--C.............................................................................................2211.0011000
..........................................................................................................................................GATTTGTAGCAAAGTGAT.......................................................................................................................................1811.0011000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTA--T.............................................................................................2411.0011000
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACGC.................................................................................................2411.0010001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--AT............................................................................................2511.0010010
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGTT--..............................................................................................2111.0011000
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACG..................................................................................................2311.0011000
droSim2
GAACAA-GCT-ACTAGA---------------------------------GAACATTTTTG--------------------------------------ATGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---AG-AAATACA-CAGTG------ATA----TGAAA------CA----------------------------------AASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................2216017.00601745213215334423325498485163312753952145138314
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2115486.00548647080169471148179730717654482662401110213000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................2214981.0049815757525538313321883785453538529721164159000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................2112476.0024761062516173483082451964664561071117156002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................2012028.002028651716366809355870465732727000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................2311854.0018542190738110110110000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................2011410.001410521611518635516393215193713245000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................2311053.0010531336214831918147120248111261044000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................191780.00780133172814285113917200000
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................181747.00747811027244842119000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................221276.00276371622013595444249511000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221269.002691746100084231412624330000
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................181265.002653196010010023248000000
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................191234.002341919245066176151814121000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................211227.00227112067202540475010225000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................221223.00223703100482790363008000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................231192.00192341414100231453265008000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................21185.008550127146111681104000
......................................................................................................................................GTGTGATTTGTAGCA..............................................................................................................................................15181.008100000040195512000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................20170.0070000380363324812000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................22161.006112000044161721410000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................23152.005230100091114120011000
............................................................................................................................................................................CCCCTTGTTGCAAACC.......................................................................................................16142.0042000000001041000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGT........................................................................................................................................21141.0041500000322100028000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................20138.003831013462731007000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................23135.00350000003220100000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAAA....................................................................................................................................24135.00350000005513120000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAC.......................................................................................................................................22130.0030165400001013000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGG........................................................................................................................................21123.0023183100010000000000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................23123.002340101034550000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAAA....................................................................................................................................25122.002200000070861000000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGA........................................................................................................................................22121.002111000038420011000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................22120.0020100071200000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................23120.002071200021202201000
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18119.0019000000140014000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................24118.0018000071100000000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19117.001700020052015011000
............................................................................................................................................................................CCCCTTGTTGCAAAC........................................................................................................15117.0017000000200015000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................24116.001600000011750011000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21116.001610000035511000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................23116.001631400041102000000
......................................................................................................................................GTGTGATTTGTAGCAA.............................................................................................................................................16115.001500000040434000000
......................................................................................................................................GTGTGATTTGTAGCAAA............................................................................................................................................17114.001400000024143000000
............................................................................................................................................................................CCCCTTGTTGCAAACCT......................................................................................................17114.0014000000100013000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................21114.001441016200000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23114.001432020000000007000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21114.001441120013001001000
................................................................................................................................................................................TTGTTGCAAACCTCACG..................................................................................................17113.0013000000000012001000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22113.001300021010203310000
..................................................................................................................................................................................GTTGCAAACCTCACG..................................................................................................15113.0013000000000013000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19112.001201023011112000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATATG....................................................................................................................................24112.001200400041020100000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATT......................................................................................................................................22112.001240000001610000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATC......................................................................................................................................23111.001140300020110000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................2019.00900012002010300000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................1919.00900013400100000000
........................................................................................................GGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1919.00900000000008100000
...........................................................................................................................................ATTTGTAGCAAAGTGAT.......................................................................................................................................1718.00800000000008000000
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................1818.00810100000004002000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAAAA...................................................................................................................................2518.00800000001520000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGTA.......................................................................................................................................2218.00800000001000007000
........................................................................................................................................GTGATTTGTAGCAAAGTGAT.......................................................................................................................................2017.00700001011013000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAG.......................................................................................................................................2217.00710000001113000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTG.........................................................................................................................................1917.00700021111010000000
.................................................................................................................................................................................TGTTGCAAACCTCACG..................................................................................................1616.00600000000015000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................2116.00600020000002200000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGATA......................................................................................................................................2416.00600000032100000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2216.00630200000001000000
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTG.........................................................................................................................................2116.00600000014010000000
..........................................................................................................................................GATTTGTAGCAAAGTGAT.......................................................................................................................................1815.00500000000005000000
.......................................................................................................................................TGTGATTTGTAGCAAAGT..........................................................................................................................................1815.00500001100003000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCA....................................................................................................1815.00500010400000000000
........................................................................................................................................GTGATTTGTAGCAAAGTGA........................................................................................................................................1914.00400000001003000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA--..............................................................................................2114.00400020002000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2314.00400001001100100000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCA....................................................................................................2014.00400001300000000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAT.....................................................................................................................................2314.00400000100110001000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAA--..............................................................................................2314.00420000000020000000
............................................................................................................................................TTTGTAGCAAAGTGAT.......................................................................................................................................1613.00300000000003000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................2013.00300010000110000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGCC--..............................................................................................2413.00300003000000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGC........................................................................................................................................2113.00320000010000000000
...........................................................................................................................................ATTTGTAGCAAAGTGA........................................................................................................................................1613.00300000000003000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCAC...................................................................................................1813.00300001200000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAAAA...................................................................................................................................2613.00300000010110000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2113.00300010001000100000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2013.00330000000000000000
......................................................................................................GCGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................2113.00300000000003000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTT.........................................................................................................................................2013.00302000000000001000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2513.00300000001100010000
......................................................................................................................................GTGTGATTTGTAGCAAAA...........................................................................................................................................1813.00300000010020000000
.................................................................................................................................................................................TGTTGCAAACCTCACGT.................................................................................................1713.00300000000003000000
...................................................................................................................................................................................TTGCAAACCTCACGC.................................................................................................1512.00200000000002000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTA.........................................................................................................................................2012.00200000001000001000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--GT............................................................................................2512.00200000000002000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCT......................................................................................................1812.00200002000000000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATG......................................................................................................................................2212.00201000000001000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATGTAT.................................................................................................................................2812.00200000000000002000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2312.00210000000100000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACA..................................................................................................2012.00200010000100000000
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAA.......................................................................................................................................2112.00200000000110000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAT--T.............................................................................................2412.00200000000000002000
...................................................................................................................................GGTGTGTGATTTGTAGCAAAGTG.........................................................................................................................................2312.00200000002000000000
.........................................................................................................................................TGATTTGTAGCAAAGTGATA......................................................................................................................................2012.00211000000000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAT.....................................................................................................................................2412.00200000100000001000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATGTA..................................................................................................................................2712.00200000001000010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2212.00200020000000000000
................................................................................................................................................................................TTGTTGCAAACCTCACGT.................................................................................................1812.00200000000001001000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATTAA....................................................................................................................................2512.00200000000200000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--T.............................................................................................2212.00220000000000000000
.......................................................................................................CGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................2012.00200000000002000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATTC.....................................................................................................................................2412.00200000000000002000
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCT......................................................................................................1912.00200000200000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--C.............................................................................................2212.00220000000000000000
..................................................................................................................................................................................GTTGCAAACCTCACGC.................................................................................................1612.00200000000002000000
.........................................................................................................GT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1812.00200000000002000000
..................................................................................................................................................................................GTTGCAAACCTCACGT.................................................................................................1622.00400000000004000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGACT......................................................................................................................................2312.00200100000010000000
......................................................................................................................................GTGTGATTTGTAGCAAAAA..........................................................................................................................................1931.67500000000000005000
......................................................................................................................................GTGTGATTTGTAGCAAT............................................................................................................................................1721.50300000000120000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCATT..................................................................................................2111.00100000000001000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATGGT....................................................................................................................................2511.00100000000001000000
..........................................................................................................................................GATTTGTAGCAAAGTGATA......................................................................................................................................1911.00100000000001000000
..........................................................................................................................................GATTTGTAGCAAAGTGA........................................................................................................................................1711.00100000000001000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--G.............................................................................................2211.00100010000000000000
dm3
GAACTG-GTT-TCAAAA---------------------------------GAACATAGTTG--------------------------------------ACGGCGGT-----------ACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-CTG---CG-AAATACA-CAGTG------GTA----TGGAA------AA----------------------------------AASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................211383318.003833180000812391525575194723262538021200100125443742041912019481751200341178309338862546744873117967293206169307567731293112600181040000000000000000092897670978034312285381364151717998332684335212813186711149211568164214785537855131636052651950818672253451698036004708266416698312334323284993111702310401701268511220633029210233935621024916354938524634437026724040331644314224872377989219291294013237234661365218720290925512584910168115622032591941996009801011290000074113001100215244176100555526541941612295108238144219471248422042194693738411514321800001251337220257469109195317832504438392524005291057052309791214023491822836838128688038511771023115870352526001125112294617330119299128553593226543841829721117421239940516654223764252913831243795835986103351168839466211989203174295274817549724735849230313501067425213310222075887268521030
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................221313658.003136582000148464973175112411454611362645912212044491522562311157059142260228631126215169511704417334413925191167137158333356244410009134230000000000000000043742732438241411265231683364910133318628859233422851032225138221171915195584631094248647642466065533365331493525882852358998123049414931289621291164060311242117311438588532616644821751891821087413357932618728044617120225220214291811161334140932631226585020285128819462611562936364370898236524737422730295592477549102203311613011557620000017915211567531420632988968131375389542981010522298091595241691818248223710000184173121342042548684951445133263394155142239152335270774521193396553103982842245613631751121391730022295041051757381062573659524921023595922023815814514339159011923174501729361965180483463040342024991333484037112683525354713242723132040718382856239768858982502887276000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................221103296.001032960000422110000101000021561139710183635252815414911102514519756701952637176365108401924301504900000000000000000120142901228101476346312117523136125103744447830468286987154208206359111232332931425131120610240325601596451437303191341178877553011692611543098214812778254776834203928311315632642360236438199518058432732075747095731252219326586413563408131706153201722423111883031735712010121892351427240314728214384931708321014988509241640116230204972100783774740118391534901554543310826758854320215212724011392601844918612602451387394656338292251167291491910318517901130140766162060266211351931211129130207510627811252639412043512111201125411955516627021995159629132805313976884011565107420674891131272792836749557576217075175291286181430
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................21172974.007297400008121010326012110125921861744529312651024101376141243711155289586483211564560197370000000000000000056735388549462244200380311080269401117310030185710416150176213305461488191113558321180700360136461022301020010707177669393425849178661454077936372182785376153147824613245015919801272389478734113521997702215612887280141220387043134013406511151231769868539546144355248524022191190401186640118946036726576679619624811000281710362313543164891101265745366231224209145444821125337614105222495118514442013336383638355351675341411658223412561048882130450047355475789815316112428518312443286376153186696216157267344136340015811180109417071383814497179845589528529389036916320521827376840149384423290
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................22132129.003212900005520152521510012001812451561415500000000162416423732341814343421323767191300000000000000000000000272719207275182928444223244325411739458710174110618829871107759610112475156125570410000110201200000000604705434243783756158118555293450000010347439632598120501212361552340114337069117501204120059183701000434700215010595698249815521289336209476331405414129113272000019172838331023614327516626116727522920121123135192826358737100651035544372173130512215342973289117314934411064298446677492275784127337441043312553902565382518734731839110160815963701012894592145285803582897115739721237711500
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................20130958.0030958000087933416041222410127141102244412131020283653112112222828119248400017310000000000000000025031118123738914513111810410299202814144626561461972763391182448382173228952231964349509352547334181940610000000727500010000003201181872314101019613141101001612691114129315701115561101213549369330116060216149161320060370100001000000775129542443911102159542211591128958793348155231245000011804712374312415201421441630622546126189132563627534029502891641653959562746152167692415401945907013335552521171214252241722816351326510141292128268650
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................20123997.00239970000400000000324610050230641109362751636788483711111721910738252621113140038060000000000000000011935250323133011106153761100271911819314411230011412040712010002238126672061011429167181030172425129143492651576419157113798891222930901082511260813201462049276109105531803201115171029001301500610047516000242152112376025493211711584232296491431471200001042015356625864620312826239286084370106458281401153379147539104414224820733060326194831420623839931425442279559142018101222124710204315020637821470109141013379193184326114139810842115749058971194137661702152873746460
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................23110031.001003100000000000100000000301000044902102411020411402416811200170190100000000000000000101201002358204207510000000552121300003012400000701112100120200003632161122962511714202715711505540101680815506100451310801004113126315313184411300517031000061391013113713339771291684986101592326710100550902126611803413381021142279843293221730227820244132410130402181339792721242631532192622182481227127391402164511197813493131122861776443201711117991201064165152153224110292462135120881343610
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................1917609.007609000000000000000001003201420150248510421002011112002502100028311000000000000000007258495882732116285342878826275106735641021291141588989620464549614734621454608001000103237000000000022100241324015701000183525061342081018741021910270052720672078100103000000000000003018207610930155191072441325000052114223002329112241211200446611432011122902314561208021231534109022000100912111004136472700912100422170
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................2114542.00454200001940454131821304004014001220000003713427113012233910610000000000000000000000010108532111495933311341249811823329368129979112632110064010015040510000000020145042972892101220011008821018110622188442132225110131065202310000000000000000000102740147012519110044817145925961496345000024602814201924871115509331312559111327101774241059191696104255608321582007031205020084342751344110222320121000314312160
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................2013488.00348800009401141321810200065010010000000048101141782083351014102000000000000000000000005136503362124027113111068200371090851845513180110141701100010101014000000010031404448646371280000006020456032074140278000000324231000200000000200000004221013011831281065919613321720552231632000012012121816131919668072084212684114314141411948169196330185186061830331110500063415141300101945313262263329005104212111313340
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................2312980.002980000000010000000000000010000000000000000220410030023000000000000000000000000015150407120101210110100000020250600211000100000502020001000000005813057330125713220200510037028130481322000000000001100000000000471003000234781414715385556272144121820600001002147199142093711124581237660724289111160011130013615832443326414510212588879255348753933233022765710810657311674250901440763418591261221539930
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................2112322.0023220000000000000000000001310041000000026112011101123531121000010000000000000000004242100001250012002320001013820140000010800101120401000000210500344239115354710011201170220859070116311090270020201432120001043000003100000002913651635403124925749138113311000005200321188241450441764111354114183224112414114543486754124191611151017272316141110183165512301532912524204826102621519839373419564195125101691013671
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................1912100.002100000000000000000020002020040400000000010000201000214020002000000000000000000054450000001000000000000002000220000000003000000100020108120000021520425022730000171241008007210917602200017520814020250312030030003241311010010005161381148144541051292760000013103656107031022307556615901023471116267020000006752315323121284892125313311287346268222261423123423124108229243221391969101881181214370
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2111651.00165100000000010002000000000600400000000011001501103201012000000000000000000000002435041912529734202101334000013183241288103153010102950110000000212400000000000110001212300010000091100230001003001010100032013000000000000000000000000021010113351041523242615122200000003007641341150207032021000010014130716958141421210121141101600301000026010010000000000000011000460
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................2211568.001568000000010000000000000100001100000021130002111014354150203400000000000000000000000000300100100000100100010042300000000003201002800020000000000031146030327387452401000000550111221501040000103031100010330000312002000611151031372111494436114521001700003105114960323304340320441108513729462422012336408101553489102618851621938939412411272504254224485532183011610106811575767430
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................2211285.0012850000125481173323103300010410000000000010010006000006160100000000000000000000000454519045824263082153824001314437435785109361352061000212020220000000000000101110110000000001032008120412510208212400130321020100102500000010000000010000474523235970427340041010001010021501100110000002010022646119201121244580500000210000012100110134200010100000101001000001200
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--TC............................................................................................2511082.0010820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901181000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................1911020.00102000000000000000000000010000000000000021040010111000120000000000000000000000000000000000110000000100000001811101000100011000000000000000000000301402323114131000003000000100000000000000100000000000000000000000030001142310227599214149700100000102204147011013363325491615414121005000000200424063104421241901564112521402101765544177312331318142115534454521581126150
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................211887.008870000528332000120000000002800000000000311020111000003200000000000000000000000000310144222422120022405277015125565960621220126081900001000000000000000000000000012100100000000205031210010320000010000007000000000150000000000000000000021401581832123781260000100000221001101033030010011012010042514643250200001200000203001000013100000101100000000001000020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................231877.00877000000010000000010000001000000000000100000002001000101000000000000000000000001601474010718110215914111110086222142023257405631602000010102013000000000000200000000001200000000000540200101020411000000026001000000100000002000000000210046202722713559424201134000100000211100001000000120001101051000170419460020200010000201101010166001202100302300120300001010
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................221859.008590000200111100100000000050010000000001101013100011041000000000000000000000000011011514136221101142128600052137615427913120284000000000000000000000000000001211010000000000000300000102101000000000010000000000000000010000002004810464523235960453220021600001000001100000000100200502002000321685958482120100001000101400000102012000100000000000011031030
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................231856.00856000000002100000140000001500000000000000001010011100000000000000000000000000002333200161108261185025418005193411316234742901416180110001010101000000000000201000010001000000000001001500003204043730100018000100000100000001000000000100129232317321923125212100000010001317021101000320032003235841036032121801400000100011001002310622000025401023200000000212850
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................231782.0078200000012301100007000000200000000000000000100000000000000552160000000000000000011111215392464103113032130024001171727570150111002000000000000010000000000001220102001000000000001100000011000020000000010000000000000000000000002100672029248427411717897000010011401210102002002100121110521100000040100001010040001011010200163100311000111000000000110000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................201689.0068900000000000003004200000500000000000001001102000102000000000000000000000000003202010020103002003223000001242532650201010010000000000101000000001000000201101000000032071002303001153011121040001001010000000000000000000161010044101616292436217345150000001100013010000110110030000202223263113352310101000100000002020000640200000102001000200000031240
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................221687.0068700000000000000000000100000000000001000000110000001010000000000000000000000003122010003232004000000000010000090110100000001000000000000010000410111101110214202222360000001210234025001200000000010210000000000013000000832002018513920136130352010010000101011000200001203422029544210413010025115351239201101111290500010141684689414162495110330011321620
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................181615.006150000000000000000520001010000000101000000000100000000000022100000000000000000911671107314221103202585003600576512645721214116603010000001900004800000000000000000000000000000000020010010002100000003000000000020000000000000201001040304021013100000000000000010100000400101100221435000000020800000100000000000000030000000000000000000000000110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................211610.006100000100000000300000000050000000000011000021100010125020000000000000000000000011125218000112302150100000010810244223000015000000000010000000000000020001230212000000000013051210000100000000000003001300000010000000000000000000020986117151210000000000101014011022045110120001110015401356210141095130420200131000204020040000100200000000300101000003100
.......................................................................................................CGGT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................201500.00500000000000001000000000000000000000000000300220010010002400000000000000000000000000030000200020020000000004210010000000100000010000000010100200110013421000210000000020000000000000000000001000000000000000000000000020030016211823213003000000000122100003023200022212020201100100000037813001121001405206130601301824156102419110206192261457032913330
......................................................................................................................................GTGTGATTTGTAGCAAAGTGT........................................................................................................................................211491.00491000000000000000000000000000000000000100010100000110100000000000000000000000001100000000020050010100000232400000000204100000000010001100000000000130210100300010010000562022200401440300000001000001000000000000000050200010226211301520000000003351030023000000432020651252020000000008163481313200160000021113120320737541473711052310511513860
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................201476.0047600000000000000000000000100200000000001000000000000000000000000000000000000001200020000510000000000000104420000000000000000010003200000000000000000010100000131100600032011013210507000120010110001000000001010000102500400240202081233000030122211226113401022121240011350222702110028431791492343615305024721313253434513104352327402137022210
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................181465.004650000000000000000000010000101000000000000000001000002000010000000000000000000108390000003300310051000001100100300000001000000000000004200000100100010403000000132500200170231014005200301001000000000000111361000000006000131015401112715300000111011200101010010001314111523221130000000101513211136817002101041433001302520012003002035330113130000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................201464.0046400000001000002000000000200000000000000000000000000000000000000000000000000004233000100292150020111200000061681464122000034000000000000000000000000000000000000000000003000300300001000000000014100000000000000000000000000000100025010302411400000010000100000010000100000000000100000000000000000000000000000010000000000000000001000100000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................231415.004150000000000000000000000000000000000000000010000000000000000000000000000000000000000000000002000100000000110230000000000000000000000002000001021000000010000000000001000000200020003000000001010100001000000010040000601200621210332214000020000213200109222101103152031500500000000008113504462103126030190110019116625936244521131771040612126110
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................191410.0041000000000000000000000000000000000000120000010000000110000000000000000000000001410030003561011001100011402173628112101000000000000000000000000000000000101322000000003030070100000202001100020000100200001000000000000000005000119118178271342720000101000103000001010002001001000211193800014150200100001000000100000081200000000000100000010011000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................211404.0040400000001001000000000110000200000000000010100121113211000000000000000000000000000000000100000001000000006250010000000000000000000000000000001010020120510600000010023001000000000002000050000100000035000000000000010110011134523711301000000000012120110300100100121011101101731619646214340001001000010031201101914123609204034123100011922190
.........................................................................................................GT-----------ACCGGGCATTTTGGGT.............................................................................................................................................................181401.004010000000000000000000000000000000000003014000100000000100000000000000000000000000000001020000000000000000238002001010000000000000000000000000002012102001601000000091000000000100000200000000101000000210000000000001040000370013000500500000231021320011035041543322003313012000000002350300003200222043607170121223717030502300310310011442010
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................231379.00379000010000000000000000000000000000000020000210000001000000000000000000000000001100000101000100000000000010200000000001000001100011000000000000000022111000001000300000010200020000010000103202100000110000001000000020140212621165513100200000100021042000000000000215211273212180442233461005443401501413216606467269733916620034452202112100
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................211367.0036700000000000000002100000300010000000010001110000000000000000000000000000000001200010020200000000020000001440000010200100000000000010000000000000000002000000000005000000000100200140000000010000000000000000000000010010006926172062192321011112000000000101000000000000000000000010000000011000000000000000010000000150600000000000000001000100040
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................191356.003560000000000000000000011020001000000010000100000001000000000000000000000000000110000053011102000012000100357180100113000000000000001000000000010160235515217000000000000210111142400300000001000100000000000000000000552110040201303014100001000001000000010012102000000234253316012212903101201302014002000011558152201300441001010000011010
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................231346.003460000001021000000000000030010000000000000000000000200000000000000000000000000010015081027401200204200339019132022622011630000000000000000000000000000001000000000000000000000000011010010003000100000000000000000000000000002002471213261217141023500001000001010002000000001000001110202000001121000000000000100000000010000000000000000010000000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................181323.0032300000000000000000000000000000000000001001000001000100000000000000000000000004925000002630010000110020011391041600001000000000000000000100000022106074673000100000000008100010022200100000200001000000000000000000000753020042210011100100000000000000000120100000101000111141926145255121620010033000000201010044222110210000000000100120120
......................................................................................................................................GTGTGATTTGTAGCAAAGTGC........................................................................................................................................211320.00320000010000000000000000000000000000000000002300010235000000000000000000000000000000000000000120000000000011000000000001300000000030001000000002210001000203100010001000120010002000400010000000010000000100000000000512000000000102000000000000115710000100110200030001653141130000001872620061010052822274014430161622301420200111001114230
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................251311.0031100000000000000000000003000000000000300000040003022011000301000000000000000000000000001000000000000000000000000000030000000000000000000000010410010212010020000000000000000000000000000000000000000000000000400000002020011220211100000000001000000000000000000000001003000000000000000200002300021011010020002145480100502500202404114102100
.....................................................................................................................................TGTGTGATTTGTAGCAAAGTGA........................................................................................................................................221293.0029300000000000000000000000000000000000200000000000120000000010000000000000000002000000000010000000000000100000000000000000000000000000000000000010000010020000001010000000000000001000100001000000000000000000200000000411000020514141001000000001012102102200113003102101451121701061859402652631313003282742050564465215823008302004249100
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAC.......................................................................................................................................221249.002490000000000000000000000000000000000000000000000000030000000000000000000000000010000000000000100000000000010000000010000000010000000000000000000000000000000000000000000301000010011200010000000050000000000000000000720111020103212030100000000000101010211000001242001251003010000001871741425600021324131700170374403631230322010120310320
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................201240.002400000200000010000000010029001000000000000000200000000000000000000000000000000020010407021101011010380010101694000000000000000000000000000000000000000000000000000000900004000010000000000000000000000010000000000000000000006184010335121001100000000000000000100000000000000000002711412100000000010000100000000010011000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................231218.0021800000000000002000100000120000000000000000010000001000000000000000000000000000100210000171000002112000100917151236000030001000000000100000000000020000000000000000000400001100002100001300000042010000100000000000000002000001410101314300110000000021023130000000310000001030110010102100400010010010000100100103200000101010000210000011450
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................221214.002140000000000000000000000000000100000000100000000000000000010000000000000000000112100000010000000100000000234110100002000000000000000000000000000000000100020000000000000000000000112000000000000000000000000000000000001000401210544161231542000000000000000000000000001100000101000000000000001101110001001000000140000000000100000100000000100
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................191210.0021000000000000000000000000000100000000000000000010001100000000000000000000000001105000000410000001030000001010195400000200000000000101000000000000000001100001000000000610102000011000010000000120000000000000000000000001202000131232156147214100000000010000020000100000001001010100140012010100000000000000000000012000000100000100000100000010
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAATC.....................................................................................................................................241204.00204000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013271000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAT--C.............................................................................................241177.00177000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014828000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATC......................................................................................................................................231150.0015000000000000000000000000000000000000000000000000000100000000000000000000000001101000000100000000000000000000000000000000000000000000010000000010000000000100000020000000010000100010000000000001000000000000000000000100002010000213111919000100000200000100000200001000101010000000011031210003000401300190010024024610411112141110112130
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................221150.00150000000000000000000000000000000000000000000000000000000000000000000000000000011010020017310200102100001043320001000000000000000001000000000000000000000000000000200000100020112101330010004000000000000000000000000000000017222961270621000000000010200000010000000000010000000000000000000110100000000000000131000100000100000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................221140.001400000000000000100100000000000000000000000000000010010000000000000000000000000030221010003100101001000080043300001010000000000000000000000000001000000000010000000100010100021000042300004040000000000000000000000001000000120022250003000000010000100001000000001000001110102510212401221000110100000100101210000000200000000000000011220
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................241128.0012800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110020000000000000000000000000000200011000050010000000000000000000000000000010000000000000000000000020020001113611300001100000000000000000000000001000122211001010000000210000210121012603000031021185111431100000000011030
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAG.......................................................................................................................................221125.001250000000000000000000000000200000000000000000001000000000000000000000000000000001000000001400000000000200000000000000000000000000000000000000111000100000000100000000000101120040173100000010000100000000000010000001100000000010001210000000000001000000000000000000002100100000000003584235310001211010702300000120012000001100020100010
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAATC...................................................................................................................................261120.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTT.........................................................................................................................................201118.001180000000000000000000000000000000000000010000000001000000000000000000000000000011000000000000000000000000000000000000000000000000100000000000000000030010000000001000003170200000000000000000000000000000000000000000000200000010000000100000000101920100200540403011002170230000000000303111120100510000010010000200100100002200000001030
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA--..............................................................................................211116.001160000000000000000000000000000000000000000000000000000000000000000000000000000011010000043000101001000030215000000000010000000000000000000000011000100000000010001000002100330130105010000000000000000000000000000000000000313863520570000010000000000000001000000100000000000000000000000001000000000000000150010000100000000000000000020
......................................................................................................................................GTGTGATTTGTAGCAAAGTGG........................................................................................................................................211111.00111000000000000000000000000000000000000100000100000110000000000000000000000000000000000000100010000000001000010100000000000000000010000100000001000000000000000100000200000100000003700000000000010000000000000000000010200000000000030000000000002100100210000000210100111020000000000044301041001300000020060010313411912100010000100220
............................................................................................................................................................................CCCCTTGTTGCAAACCTCATT..................................................................................................211110.0011000000000100001000000000000100000000000000000000000001000000000000000000000000000000001920001000000003009261754500000300000000000000000000000000000000000000000000000040010000000000000000000000000000000000000000000000000016001002100000000000000000000100000000000000000000010000000100100000000100000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATC....................................................................................................................................251110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................211100.001000000000000000000000000000000000000000000002000000000000000000000000000000000000000001014000000011000000612957200001000000000000000000000000001010000000030000000000000000000000000000000001000000000000000000000000000000058335722100100000000000100010000000000000000100000010000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................22195.00950000000000000000000000000000000000000000000000000000000000000000000000000000100100000020000000011000000103503000010000000002000000000000000001000000100000000000000001000000020000100000040000000000000000000000000000100123427263104100000010000020000000000000000000101210000002000000000000000100000000012000000000001000000000200010
........................................................................................................................................GTGATTTGTAGCAAAGTGAT.......................................................................................................................................20193.0093000000000000000000000000010010000000000000000000000000000000000000000000000000100000000100000001000000002000000000000000000000000001000000100000000002000010000400045000020033110100000010101000000000001002000000200010010231011000100000000000000000000000000000000110000000001000202010141000000100001010000112010510100201000101040
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18183.00830000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000301000000000000000000000000000000000000000101020030000000000000200000000000000000010000000000000000000000000102200100011010120000004000000000000100000000000013131001411031101000010100000000000000191001003000000000000000000200
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................20178.0078000000000000000000001000001000000000000001000000000000000000000000000000000000100000001000000000000000000400000000000000000000000000000000000000101000000000000000000000110000000100000130100020000000000000000000051000010000010004000000010000000100000100000100000000100030202202010001000000000001000000010322000011000301011021070
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATATG....................................................................................................................................24178.0078000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001002000000000000000000000000000000000000000000000000000000000001000000000020010222030000000000010001200000000000010000000100040000113100010000021100001202000000041110321201501101310112020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................22177.00770000000000000000000010020030000000002100010100000100000000000000000000000000000001111010000000000000000109200000001000000000000000000000000000000000010000100000300011000000000000000000000000000000000000000000000010000001010402000000001000000001100000000000000000000000120002001410101101000000000001000000000000000000100100000010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................24174.00740000000000000000000000000000000000000000000000000000000093300000000000000000000000000000000000000000000000100001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000924321573000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000
droEug1
TAATTT-TAT-AA---A--T----------------------CCGA------ATA-----AATTC----C--------------------------------TCGGC-----------AATGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGATGAG-TTCCA-----TAAACAACCC-G--A---------------ATAGGAAAAG-GCA------AG---TGATCATATTTTT-CT-CTSizeHit CountTotal NormTotal
No Reads
droBia1
GGATAC-GAT-TGAAAA---------------------------------AAATGTCTTCAACTC----T--------------------------------TCAGT-----------ACTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-TCCG--TT---AAACATCAC-CAA-ACG-----AAT----ATCA--A-A------------G---G----------GA-CG-CTSizeHit CountTotal NormTotal
No Reads
droTak1
CAATAT-CTC-AA----TA-------------------------------G---------GATT-------------------------TGAATAAAT-ATAGCAGT-----------TCAGGACATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAA-TCCG-----AAATACAAC-GCCAA-ATG-----AT--------------------------------------------AT-TCSizeHit CountTotal NormTotal
No Reads
droEle1
GTTTAA-GATCAG----TTT----------------------GCACACGAG---------GATTT----T--------------------------------CCGGT-----------TCAGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-ACCTAT-G---AAACAACAT-T--A---------------GTT---AGA------------G---TGATGTATTGGTG-CT-TTSizeHit CountTotal NormTotal
No Reads
droRho1
AAAGAA-TAT-C--AGT---------------------------------GAACAAATTGGATTG----T--------------------------------CCGAC-----------TCTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAG-TCCCAC-A---AAACAACAT-T--A---------------ATTA--A-A------------G---TG-------GTAAATG-TTSizeHit CountTotal NormTotal
No Reads
droFic1
TTATAA-AAT-AA----TTG----------------------GTGTA-GGG---------GAT-------------------A---------------------TT------AAAGTATCTGGGCGTTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGA-TCCCAC-A---TAACATCAA-----ATG----------------------------------------------AAAT-AA-GCSizeHit CountTotal NormTotal
No Reads
droKik1
GAGCTGAAAT--C----TTG----------------------GCATT-TGT---------GAC-------------------TA--------------------TCA-----------AGTGGGCATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGTATTTGAT--GATCCCCTTGTTGCAAACCTCACGCC--AAAGATGGAATCCTA-----TCCACATCAA-------------------------------G-------------G-------AAGTG-CA-TCSizeHit CountTotal NormTotal
No Reads
droAna3
AATGGA--ATCAG----TAA----------------------GTGG-----------------------------------------------------AAAGGTGT-----------ACTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGCT-TTCCA-----ACGGCAACAT--------------------ATCA----------GCAAGG-----A--------AGAC-TAAGASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................2217701.007701260048186410514100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2112345.00234510907058414932285
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................211610.006101193315355115
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221342.003421157111513361
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................221318.00318758214100119
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211284.00284243361400
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201196.00196491283538
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................201167.00167230097461
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201113.001139980402
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................231105.0010541590203
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................23175.007511585001
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................19175.007590114816
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19173.007329422000
........................................................................................................TGT-----------ACTGGACATTTTGGGT.............................................................................................................................................................19173.007315133744
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................20154.0054151061418
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................23149.0049131001619
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................21146.0046102041020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................23145.00459350001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22138.003819170101
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--A.............................................................................................24134.00340340000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................23132.00325200520
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20128.002811170000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19128.00287170112
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18125.00259160000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23119.00191520002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................24117.00171321001
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21115.00151010310
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18113.0013750001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................22111.00111000001
......................................................................................................................................GTGTGATTTGTGGCAAAG...........................................................................................................................................18110.0010200224
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATA......................................................................................................................................2219.009301023
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAGGT...................................................................................................................................2619.009100080
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2219.009710100
.......................................................................................................................................TGTGATTTGTGGCAAAGTG.........................................................................................................................................1918.008300014
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2118.008251000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGC........................................................................................................................................2118.008000161
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................1918.008620000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2117.007110005
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATC......................................................................................................................................2317.007200014
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................2416.006060000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--T.............................................................................................2216.006230001
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................2216.006510000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGT........................................................................................................................................2116.006100041
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--A.............................................................................................2415.005041000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................1915.005410000
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTG.........................................................................................................................................2114.004000202
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAC.......................................................................................................................................2214.004200002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................2114.004030001
...............................................................................................................................................................................CTTGTTGCAAACCTCACGT.................................................................................................1914.004121000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--T.............................................................................................2314.004310000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................2214.004100021
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2214.004040000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACAT.................................................................................................2213.003100011
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAG.....................................................................................................................................2413.003100020
.......................................................................................................GTGT-----------ACTGGACATTTTGGGT.............................................................................................................................................................2013.003010002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2013.003120000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2213.003300000
......................................................................................................................................GTGTGATTTGTGGCAAAGTT.........................................................................................................................................2013.003100011
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGA........................................................................................................................................2213.003200001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2313.003210000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--TT............................................................................................2512.002200000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGTT--..............................................................................................2212.002200000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAA--..............................................................................................2312.002110000
........................................................................................................TGT-----------ACTGGACATTTTGGGC.............................................................................................................................................................1912.002020000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--T.............................................................................................2412.002200000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2312.002110000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAGGTA..................................................................................................................................2712.002100010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--A.............................................................................................2312.002011000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................2012.002020000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2212.002110000
........................................................................................................................................GTGATTTGTGGCAAAGTGA........................................................................................................................................1912.002100010
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATG......................................................................................................................................2312.002000002
.........................................................................................................GT-----------ACTGGACATTTTGGGT.............................................................................................................................................................1812.002000002
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAGG....................................................................................................................................2512.002000020
......................................................................................................................................GTGTGATTTGTGGCAAAGTGG........................................................................................................................................2121.503200010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--AT............................................................................................2511.001010000
................................................................................................................................................................ATTTGAT--CATCCCCTTGTTGCAAACC.......................................................................................................2611.001010000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGTT--T.............................................................................................2311.001000001
.............................................G-----------------------------------------------------AAAGGTGT-----------ACTGGACATTTTGGGT.............................................................................................................................................................2511.001010000
droBip1
CTAAGG-GTT-GA----ATA----------------------GTGAA-CAG-----GTTT--------------------------------------------TTT-----------ACTGGACATTTTGGGTGTGTGATTTGTGGCAATGTGATAGGTATTTGAT--AATCCCCTTGTTGCAAACCTCACGCC--AAAGATGAT-ATCCAT-A---TAGCAACGT-T--A---------------TTA---AGGT--CACCAAAG-----T-------GAATG-AT-TTSizeHit CountTotal NormTotal
No Reads
dp5
GAAAAA-GTT-TTTATA-----------TCCCGGATAACTGGGTATC-CAG---------GA--ATCCA-----------------------------------GAC-----------TGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAA-TCCCAC-A--CCTACA-CTCTC------ATATAAT--GAT---------------------------------------CA-TGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................22115118.0015118360915234321019922133451864
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2116757.006757148925787092901664139356
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211702.0070206152552251011
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................201436.0043612560233510351912
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221401.0040102055720374831300
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201400.00400037658621020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201365.00365016952134531010
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................221352.003521130295172842321652
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................211288.0028801452161842131744
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................211130.001300687252215245
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................191123.00123080211623046
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................231112.001120245829100000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................201105.0010504910016106914
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................23197.00970473216010010
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19191.00910562011300001
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20186.00860541219000100
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22169.006904399420200
......................................................................................................................................GTGTGATTTGTGGCAAAGTGT........................................................................................................................................21165.0065039220316300
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................23164.0064038157100030
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22158.0058034159000000
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18153.0053035710100000
......................................................................................................................................GTGTGATTTGTGGCAAAGTT.........................................................................................................................................20251.50103076000419022
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18147.004704042100000
......................................................................................................................................GTGTGATTTGTGGCAAAG...........................................................................................................................................18131.003101410120148
.......................................................................................................................................TGTGATTTGTGGCAAAGTG.........................................................................................................................................19130.003002800001100
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATA......................................................................................................................................22129.00290901374113
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................23129.002905610121112
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19124.002402211000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19121.002101224111000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGT........................................................................................................................................20118.00180700037100
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................23116.001601132000000
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGA........................................................................................................................................22115.00150700024020
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21113.001301300000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................21111.001101010000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--A.............................................................................................22111.001101100000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................23111.00110810001010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21111.00110514100000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19110.00100800000020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................24110.00100721000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23110.00100503101000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................22110.00100400020310
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................2319.0090300210210
........................................................................................................GAC-----------TGTGGACATTTTGGGT.............................................................................................................................................................1918.0080201401000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2118.0080152000000
........................................................................................................................................GTGATTTGTGGCAAAGTGAT.......................................................................................................................................2017.0070700000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2217.0070421000000
...................................................................CA-----------------------------------GAC-----------TGTGGACATTTTGGGT.............................................................................................................................................................2116.0060000000501
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTG.........................................................................................................................................2116.0060100040100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2116.0060402000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2216.0060501000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTTT........................................................................................................................................2145.002001400032100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2215.0050211100000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................2415.0050401000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2215.0050311000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAA.......................................................................................................................................2214.0040100001020
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2314.0040301000000
................................................................................................................................................................................TTGTTGCAAACCTCACGT.................................................................................................1814.0040400000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATC......................................................................................................................................2314.0041200001000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--A.............................................................................................2314.0040400000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................1814.0040211000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................2013.0030300000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................2113.0030021000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--T.............................................................................................2413.0030210000000
......................................................................................................................................GTGTGATTTGTGGCAAAGC..........................................................................................................................................1913.0030000001002
....................................................................A-----------------------------------GAC-----------TGTGGACATTTTGGGT.............................................................................................................................................................2013.0030100000101
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATATG....................................................................................................................................2513.0030000000030
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2113.0030300000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2212.0020011000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATAA.....................................................................................................................................2312.0020000200000
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACG..................................................................................................2312.0020200000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGC........................................................................................................................................2112.0020001100000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAC.......................................................................................................................................2212.0020010100000
..............................................................................................................................................................................CCTTGTTGCAAACCTCAC...................................................................................................1812.0020200000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGTT--..............................................................................................2212.0020200000000
........................................................................................................................................GTGATTTGTGGCAAAGTGA........................................................................................................................................1912.0020200000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGG........................................................................................................................................2112.0020200000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATAT.....................................................................................................................................2312.0020100001000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATG......................................................................................................................................2212.0020010100000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAA.......................................................................................................................................2112.0020100010000
.......................................................................................................................................TGTGATTTGTGGCAAAGT..........................................................................................................................................1812.0020200000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTA.........................................................................................................................................2041.7570700000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTT.........................................................................................................................................1941.5060600000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAA--..............................................................................................2311.0010100000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCT....................................................................................................1911.0010100000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCT....................................................................................................2011.0010100000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGT.................................................................................................1911.0010100000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGTT--..............................................................................................2111.0010100000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAT.....................................................................................................................................2411.0010100000000
.........................................................................................................................................TGATTTGTGGCAAAGTGA........................................................................................................................................1811.0010100000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAC.......................................................................................................................................2111.0010010000000
droPer2
AGATAA-GAA-AA----AAGTTGTTATATCCCGGATAACTGGGTATC-CAG---------GA--ATCCA-----------------------------------GAC-----------TGTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATTTGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAA-TCCCAC-A--CCTACA-CTCTC------AGATAAT--GAT------------CA------TGTGAA-------CGAAA-AC-AASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2111375.001375217869821524510
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................2211294.00129424829331372674
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................201497.0049721721727432
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................211339.003390821331285
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................221250.0025001261736179
......................................................................................................................................GTGTGATTTGTGGCAAAGTGT........................................................................................................................................211150.0015007056132
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................191146.00146051514121
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221134.00134029639564
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................211131.001310121114562
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................21198.00980892160
......................................................................................................................................GTGTGATTTGTGGCAAAGTT.........................................................................................................................................20296.50193460918156
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................20183.008304092743
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................20167.00670621130
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................20160.006013349121
.......................................................................................................................................TGTGATTTGTGGCAAAGTGT........................................................................................................................................20119.00190202510
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................23116.0016222109
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGA........................................................................................................................................22116.0016011266
.......................................................................................................................................TGTGATTTGTGGCAAAGTG.........................................................................................................................................19115.0015040137
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................23115.00150021210
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19115.0015020562
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22112.0012071220
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATA......................................................................................................................................22111.0011011423
......................................................................................................................................GTGTGATTTGTGGCAAAG...........................................................................................................................................18111.0011011315
........................................................................................................GAC-----------TGTGGACATTTTGGGT.............................................................................................................................................................19110.0010000109
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................2319.009051210
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................2218.008070100
......................................................................................................................................GTGTGATTTGTGGCAAAGTC.........................................................................................................................................2017.007000106
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................1817.007070000
......................................................................................................................................GTGTGATTTGTGGCAAAGTTT........................................................................................................................................2146.50260002222
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAA.......................................................................................................................................2216.006000015
......................................................................................................................................GTGTGATTTGTGGCAAAGTGTC.......................................................................................................................................2216.006000006
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................2316.006000015
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................1915.005030110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................2315.005041000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................1914.004040000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................2214.004020002
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................2014.004040000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATATGC...................................................................................................................................2614.004000004
......................................................................................................................................GTGTGATTTGTGGCAAAGTGTA.......................................................................................................................................2213.003000003
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................1813.003030000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATATG....................................................................................................................................2513.003000003
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................1913.003011100
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATTC.....................................................................................................................................2413.003000003
......................................................................................................................................GTGTGATTTGTGGCAAAGTCT........................................................................................................................................2112.002000002
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATCG.....................................................................................................................................2412.002000002
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATC......................................................................................................................................2312.002000002
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--A.............................................................................................2212.002010010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................2112.002020000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................2312.002110000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATATG....................................................................................................................................2412.002000002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--G.............................................................................................2412.002200000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2212.002020000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATCC.....................................................................................................................................2412.002000002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2112.002010010
......................................................................................................................................GTGTGATTTGTGGCAAAGTA.........................................................................................................................................2031.334010021
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................2111.001000100
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAAA....................................................................................................................................2511.001000001
.............................................................................................................................................................................CCCTTGTTGCAAACCTCA....................................................................................................1811.001000010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................2111.001000010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACAT.................................................................................................2211.001001000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATATGCA..................................................................................................................................2711.001000001
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2211.001010000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATAT.....................................................................................................................................2411.001000001
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................2011.001010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................2411.001010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCG....................................................................................................1911.001010000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATAT.....................................................................................................................................2311.001010000
........................................................................................................................................GTGATTTGTGGCAAAGTGAT.......................................................................................................................................2011.001010000
.....................................................................................................................................TGTGTGATTTGTGGCAAAGTGATT......................................................................................................................................2411.001000100
.......................................................................................................................................TGTGATTTGTGGCAAAGTGG........................................................................................................................................2011.001000010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2211.001010000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2311.001000010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2111.001000010
.........................................................................................................................................................................CATCCCCTTGTTGCAAACCT......................................................................................................2011.001000010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2211.001001000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2311.001001000
..........................................................................................................................................GATTTGTGGCAAAGTGAT.......................................................................................................................................1811.001000100
droWil2
AAAGAT-TCT-A---AA---------------------------------TAT-----------C----T--------TAAGTA-CATTTGTTTAGTTAAAACGAAT-----------TGTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACTTGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGTC-TCC------AAATACATCAGT-----CGATA----TCCAG------AA--T-C-------AG---T-------TTGCA-AT-TTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................2215587.005587493400441646403
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................2113774.003774196215023712693
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAT.......................................................................................................................................221890.0089022913355301172
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211325.0032523001148
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221297.00297286149798
......................................................................................................................................GTGTGATTTGTAGCAAAGTGA........................................................................................................................................211283.0028335573211643
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201176.0017601590107
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201109.0010996921019
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT................................................................................................23191.009195701312
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATA......................................................................................................................................23187.00875362224
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATT......................................................................................................................................23170.00703286195
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19167.0067067000
......................................................................................................................................GTGTGATTTGTAGCAAAGTG.........................................................................................................................................20166.006621061929
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATA......................................................................................................................................22158.00581271362
.......................................................................................................................................TGTGATTTGTAGCAAAGTGAT.......................................................................................................................................21153.00533263129
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC................................................................................................23145.00451526040
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18132.0032031010
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATC......................................................................................................................................23131.0031178303
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19129.002915689
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20126.0026025001
......................................................................................................................................GTGTGATTTGTAGCAAAGT..........................................................................................................................................19124.0024431340
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA................................................................................................23123.0023115070
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18119.0019018001
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19116.0016013021
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22114.0014011021
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAC.......................................................................................................................................22113.0013101101
.......................................................................................................................................TGTGATTTGTAGCAAAGTGA........................................................................................................................................20111.001114222
......................................................................................................CGAAT-----------TGTGGGCATTTCGGGC.............................................................................................................................................................21111.001141042
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21110.001004132
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCTT...............................................................................................2419.00908001
........................................................................................................AAT-----------TGTGGGCATTTCGGGC.............................................................................................................................................................1919.00930033
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2319.00908010
........................................................................................................................................GTGATTTGTAGCAAAGTGAT.......................................................................................................................................2018.00843010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCAA...............................................................................................2418.00805030
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................2217.00706100
......................................................................................................................................GTGTGATTTGTAGCAAAG...........................................................................................................................................1817.00770000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG................................................................................................2317.00704003
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT................................................................................................2216.00603012
......................................................................................................................................GTGTGATTTGTAGCAAAGTGAA.......................................................................................................................................2216.00620130
......................................................................................................................................GTGTGATTTGTAGCAAAGTGG........................................................................................................................................2116.00660000
.........................................................................................................AT-----------TGTGGGCATTTCGGGC.............................................................................................................................................................1816.00620022
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCCA...............................................................................................2415.00503020
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................1915.00505000
.......................................................................................................GAAT-----------TGTGGGCATTTCGGGC.............................................................................................................................................................2015.00530002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................2114.00403010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCCT...............................................................................................2414.00413000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCA....................................................................................................1813.00303000
.....................................................................................................ACGAAT-----------TGTGGGCATTTCGGGC.............................................................................................................................................................2213.00310002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2113.00300021
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATT......................................................................................................................................2213.00302001
.......................................................................................................................................TGTGATTTGTAGCAAAGTG.........................................................................................................................................1913.00302001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT................................................................................................2313.00303000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC................................................................................................2213.00312000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................2113.00300012
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................2312.00200011
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA................................................................................................2212.00202000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2012.00220000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2212.00202000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCTT...............................................................................................2212.00202000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCCC...............................................................................................2412.00211000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGT........................................................................................................................................2112.00201001
.......................................................................................................................................TGTGATTTGTAGCAAAGTGATG......................................................................................................................................2211.00101000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATCC.....................................................................................................................................2411.00110000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAA.....................................................................................................................................2411.00100010
......................................................................................................................................GTGTGATTTGTAGCAAAGTGACC......................................................................................................................................2311.00110000
.........................................................................................................................................TGATTTGTAGCAAAGTGA........................................................................................................................................1811.00101000
........................................................................................................................................GTGATTTGTAGCAAAGTGATA......................................................................................................................................2111.00101000
.......................................................................................................................................TGTGATTTGTAGCAAAGT..........................................................................................................................................1811.00101000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCA................................................................................................2011.00101000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGT.................................................................................................1911.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTG.....................................................................................................1811.00110000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAAA....................................................................................................................................2511.00100010
................................................................................................................................................................................TTGTTGCAAACCTCACGCT................................................................................................1911.00101000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCA................................................................................................2111.00101000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2111.00101000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGCT................................................................................................2411.00101000
.........................................................................................................................................................GATATGTACTTGAT--AATCCCCTTGTTGCA...........................................................................................................2911.00101000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATATG....................................................................................................................................2511.00100010
................................................................................................................................................................................TTGTTGCAAACCTCACGT.................................................................................................1811.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCTA...............................................................................................2411.00101000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGTAA...............................................................................................2111.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCCG...............................................................................................2411.00100001
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCTC...............................................................................................2411.00101000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATG......................................................................................................................................2311.00100010
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCCT...............................................................................................2211.00110000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGACT......................................................................................................................................2311.00100010
.........................................................................................................................................................................AATCCCCTTGTTGCAAACCTCACGC.................................................................................................2511.00101000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGT.................................................................................................2011.00101000
........................................................................................................................................GTGATTTGTAGCAAAGTGA........................................................................................................................................1911.00100010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCCC...............................................................................................2311.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACAA.................................................................................................2211.00101000
......................................................................................................................................GTGTGATTTGTAGCAAAGTGATAG.....................................................................................................................................2411.00100100
.........................................................................................................................................................................................................................AATACATCAGT-----CGATA----TCCAG------......................................2111.00100010
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCCA...............................................................................................2211.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCTTT..............................................................................................2511.00101000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCCCCC.............................................................................................2611.00100001
.....................................................................................................................................CGTGTGATTTGTAGCAAAG...........................................................................................................................................1911.00110000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCGT...............................................................................................2411.00110000
droVir3
GAGCGT-GAT-TTA-----T----------------------GCAC---AGA-----TCA---TGTCCA-----------------------------------GAGTGTGTAATATATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC-TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGGC-GC-----ATTTAACCAGCAA-T--A---------------TAA---AGATT-CA------TG---TG-------T-----A-AASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................22113847.0013847461616835131583353221758115714824926515327507062124104112173152109117541197543706438561183937933127714152026184320939544912534368117158765832033314914925329646213170121169
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................21111493.0011493298849133928442435127619195471868726719958811301021921261081701171741738616810465115851169915364004001213023234121135120257731365101126801591361089513410181323281211217
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221881.008810211618461131253110619641792251077510181929101491382415141115832002000110000001000001082200521552653756335
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201845.0084518403510430100528210515601333119310291669591278481100000001000001002116516041820361264753581118
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................221778.0077805706222244211610024551213412121513202925161015241064103000013001011100000171350019181099414023282927746610
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................211693.00693006396010000002031020000330123300011000100000000000000000000000022900001003101002
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................231532.00532451478461000001014721923596451161011454165382701011102212121100384320151945410521104453610
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201441.00441003964000000000110101000401022510210300040000000000000000000011100310002001000101
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................211386.0038601332615201281010013415204027877991441010000107000000000010000000032746037543121122134734411
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATG......................................................................................................................................221325.0032500372524030015621040050454296510245321453200000000002000000011291700111211421100016972730
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATC......................................................................................................................................231324.0032451519367500000010002001402212221911718030000290000112001110000000032901000027191420272000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................231241.00241323244000000001000000021100020002504000110001110014222231000210000010022211019142404110
....................................................................................................................TATCTGCGCATTTTGGGC.............................................................................................................................................................181213.00213962500000000000000100000011012203001201220000000000000000000010000305302651328700000
...................................................................................................................ATATCTGCGCATTTTGGGC.............................................................................................................................................................191182.0018243062000000001000001010025332120100111321000000000000000000014102052525146917840042
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................231152.0015200911020001011011100100322272203030122220001221010113001000007036031714113131111021
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................231134.0013420702100010000100100000003330200101001510000001010110010001305000020139716111740042
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................201134.001340128111300010002102005013001128260600000100000000001000000000132900000340402000010
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................211127.00127008104300300010221101015021135450000120200000000000000000001390116211001000904911
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................231122.00122104716000000011100000130114100000020023100110000000010020000122004101000103036025
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19186.008601193000100005021000032021210241523001030000000000000112000031000020031201002111
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................24184.0084002122000000000001010002000002300100010101010000000110001000110001000204405402000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................19178.007800655000000010001000000000000000111100010000000000000000000000000010000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--T.............................................................................................24175.0075000200000000000000000000000000110100000002220310100302010020000000001297431500100
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................18173.007300534000000000020010002000010010000000000000000000000000000000000000013023000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................20170.007000604000000000000000100000100000000101001000000000000000000000000000001000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................22162.006200256010000000010000200001001400100200100000000000000000000021100000020030104021
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................22161.006100249000000000000000000000000000000001200000000000000000000000002102000000005735
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................20150.005000100110100001000100000000000132200001002000000000000000000008400013100000020014
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................24145.00450072000000000000000000000000000000000100010001010011000000100000021055030503311
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18142.004200331000000000000100100001110010000000010000000000000000000000000010000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19140.004000380000000000000000010010000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................23137.003700244000000000010000000000001010000000020000000000000000000001000000100000001010
......................................................................................................................................GTGTGATTTGTGGCAAAG...........................................................................................................................................18136.00360010001000000000000000001010001001000000000000100000010000001000001057412700000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21135.003500141010000002101000000000001000000001010010000000000000000000000110000000004212
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................21133.003311202000000000001000000010000001000000001000000000001000010000000010001000000100
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19129.002900241000000000010000100000000000110000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................20128.002800121000000003000000000000010000013000111000000000000000000000000010000000002100
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATA......................................................................................................................................22126.00260000000000000200000000001001000000000000000000000000000000000000134300000021161
..................................................................................................................TATATCTGCGCATTTTGGGC.............................................................................................................................................................20124.00241330100000000000000000000000000000010000000000000000000000000000110007022200000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................23121.00210060000000001000000010201021001200101000000010000000010000000000000000000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--A.............................................................................................22119.00190020000000000000000031102001100020010100000000000000000000000000001001000000101
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................19119.00190220000000000000010001120000010200000001000000000000000000021100000020000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21119.001900120101000001000000001000001000000000010000000000000000000000000000010000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................22115.00150381000000000000000010100001000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--C.............................................................................................24115.00150015000000000000000000000000001000001000000000000000000000000000000000120400000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21115.00150053000000000011000010010000010000000000000000000000000000010000000000010000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATC......................................................................................................................................22115.00150021032000000000000000000000110102000000000000000000000000000200000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................18114.00140251010000000000000000000000000000000000000000000000000100000000000000031000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAA.......................................................................................................................................22114.00140001002000000000000000000000010000000000000000000000000000000000000021000010033
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATGAGC-..................................................................................................................................26113.00130000002000022000000000000102000000000100000000000000000000000000000002000000010
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................21111.00110041000000000010010000000102001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--T.............................................................................................22111.00110020000000000000000000000311000001001100000000000000000000000000000010000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATG......................................................................................................................................23110.00100010002000000000000000000001000000000000000000000000000000000100000011021000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATGA.....................................................................................................................................2319.0090000000000000000000000000101000000000000000000000000000000000200010000001012000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGT........................................................................................................................................2118.0080000031000000010000000000000000000000000000000000000000000000300000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2318.0080021000000000000000000000000000000100020000000000000000000000000100100000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--..............................................................................................2118.0080031000000000000000000001000001000000000000000000000000010000000000100000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--T.............................................................................................2217.0070200000000010000000001000000000000100000000010000100000000000000000000000000000
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACGC.................................................................................................2416.0060050000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACAA.................................................................................................2216.0060050000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2216.0060060000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAAA..................................................................................................2115.0050030000000000000000000000000010100000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................2215.0051120000000000000000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAAA......................................................................................................................................2324.5090000000000000000000000000130000000000000000000000100000000000100000002000010000
................................................................................................................................................................................TTGTTGCAAACCTCACGCT--..............................................................................................1914.0040020000000000001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................2214.0040011000000000000000000000000000000000000000000000000000000000000000020000000000
........................................................................................................................................GTGATTTGTGGCAAAGTGAT.......................................................................................................................................2014.0040030000000000000000000000001000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAT--..............................................................................................2314.0040002000000000000000000000000000000001000000000000000000000000000000100000000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATGT.....................................................................................................................................2314.0040000000000000000000000010011000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCAC...................................................................................................1814.0040030000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................2114.0040010000000000000000000000000100000000100000000000000000000000000000000000100000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATTC.....................................................................................................................................2414.0040000000000000000000000000001100000000000000000000000000000000000000000020000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATCC.....................................................................................................................................2414.0041000000000000000000010000000010000000000000000000000000000000001000000000000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTG.........................................................................................................................................1923.5070000010000000000000000010000100100000002000000000000000000001000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGG........................................................................................................................................2123.5070010000000000000000000000000000000000000000000000000000000000000000000123000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACTT.................................................................................................2213.0030110000000000000000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGA..........................................................................................................................................1913.0030020000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTT.........................................................................................................................................2013.0030010000000000000000100000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACCT.................................................................................................2213.0030020000000000000000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACC..................................................................................................2013.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--G.............................................................................................2413.0030001000000000000000000000000000000000000000000000000000000000000000010000100000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATGAG....................................................................................................................................2513.0030000000000000000000000010000000000000010000000000000000000000000010000000000000
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCT--..............................................................................................2013.0030021000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--T.............................................................................................2413.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTA--..............................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000010000000002000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--AA............................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000003000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2113.0030020000000000000000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGT.................................................................................................2313.0030000100000000000000000000000000000000010000000000000000000000000000000000000010
.................................................................................................................ATATATCTGCGCATTTTGGGC.............................................................................................................................................................2113.0032000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................2213.0030001000000000000000000000000000000000000000000000000000000000100100000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2012.0020000000000000001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................C--AAAGGTGGC-GC-----ATTTAAC......................................................................1912.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCA....................................................................................................2012.0020010000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACA..................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCA....................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATGA.....................................................................................................................................2412.0020000000000000000000000000000000000001000000000000000000000000000000001000000000
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACC..................................................................................................2212.0020010000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--G.............................................................................................2412.0020000001000000000000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTC.........................................................................................................................................2012.0020000000000000000000100000000000000000000000000000000000000001000000000000000000
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATTT.....................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000002000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATGAAA-..................................................................................................................................2512.0020000000000000000000000000010000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCT--T.............................................................................................2112.0020010000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATCT.....................................................................................................................................2312.0020000000000000000000000000000100000000000000000000000000000000100000000000000000
......................................................................................................................................................................TTCCATCCCCTTGTTGCAAACCTCACGC.................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAA...................................................................................................1912.0020010000100000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAA--..............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000101
..........................................................................................................................................................................ATCCCCTTGTTGCAAACCTCACG..................................................................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
GGATAA-AGA-CT-----AT----------------------TCGG---AG----------------------TGTTATATCTATC-------------AT--GTGT----------ATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TATGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGAC-GC-----ATAGCAGCAACAA-T--T---------------GAA---AGATA-TT------CG---A-------TTAAA-CT-TASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................22166929.006692997412292282415646921
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................21111192.00111925386179205255513928
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................2311685.00168521095514542
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................2111204.0012048562333400
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................201849.0084932218105035
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--..............................................................................................231793.00793200017720
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATG......................................................................................................................................221597.005978373449697204
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................221561.0056117313163231413
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................231559.005591060004530
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................221544.00544190143103270
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................201496.00496458113330
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................211384.003848117419550100
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................191315.00315351002790
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................201315.00315540002610
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................221305.003054821123188105
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGA.................................................................................................221246.00246682001751
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................201219.0021944533611363
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................181212.00212300001820
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................231171.00171420001290
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................241169.00169291211360
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................211113.001132013811952
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................23178.0078124104021
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................19163.006314211450
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................18153.005334000190
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCAC...................................................................................................21150.005014210330
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................19147.004725000220
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................22137.003723100130
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACC..................................................................................................21133.00333000300
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................23132.00324300205
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATC......................................................................................................................................23131.00318003416
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--T.............................................................................................24131.00310100300
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--A.............................................................................................24129.00295200220
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--A.............................................................................................24124.00242000220
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................20124.0024512709
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACA..................................................................................................21122.00229110110
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAC.......................................................................................................................................22121.00210100191
.........................................................................................................GT----------ATTTGCGCATTTTGGTC.............................................................................................................................................................19119.00192600101
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGCT--..............................................................................................24118.00181000170
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--C.............................................................................................24116.00163100120
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCA....................................................................................................20116.00161100050
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................21116.00161310011
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGT.................................................................................................23115.00152000130
.......................................................................................................................................TGTGATTTGTGGCAAAGTG.........................................................................................................................................19114.0014015305
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................19114.00141300010
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCC--..............................................................................................22114.00143000110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGG.................................................................................................22114.00141000130
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................22112.0012800040
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATC......................................................................................................................................22112.0012400008
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--T.............................................................................................22111.0011500060
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................22111.0011502103
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................21111.0011302060
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--..............................................................................................21111.00111000100
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAA...................................................................................................20110.0010700030
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGAC--..............................................................................................2319.009000090
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATGT.....................................................................................................................................2319.009012312
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTC--..............................................................................................2319.009201141
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--A.............................................................................................2418.008200060
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATGAGC-..................................................................................................................................2618.008200006
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCT--..............................................................................................2018.008000080
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCC--C.............................................................................................2418.008000080
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATA......................................................................................................................................2217.007110032
...............................................................................................................................................................................CTTGTTGCAAACCTCACGCC--..............................................................................................2017.007000070
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2117.007700000
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................1917.007310111
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGCA--..............................................................................................2416.006300030
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCG--..............................................................................................2316.006100050
................................................................................................................................................................................TTGTTGCAAACCTCACGCC--..............................................................................................1916.006100050
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCC--T.............................................................................................2216.006100140
........................................................................................................TGT----------ATTTGCGCATTTTGGTC.............................................................................................................................................................2016.006120030
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGCT--..............................................................................................2116.006100050
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGA.................................................................................................2315.005200030
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAA.......................................................................................................................................2215.005210011
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAC.......................................................................................................................................2115.005001040
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATTT.....................................................................................................................................2414.004210010
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAT...................................................................................................2014.004000040
............................................................................................................................................................................CCCCTTGTTGCAAACCTC.....................................................................................................1814.004000040
droGri2
GTTTCT-TCT-TTTAAA---------------------------------GCATA--TTAAATTC----CGAGT-------------------------GTGGTATT-----------TCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--TTGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGGC-GC-----ATCTAAGCAACAA-T--A---------------TTA---ATATA-CA------AG---TT-------TCCACTA-TTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACG..................................................................................................211720.0072069921
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGC.................................................................................................221697.006976907
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACG..................................................................................................20163.0063621
............................................................................................................................................................................CCCCTTGTTGCAAACCTCAC...................................................................................................20157.0057552
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGC.................................................................................................21154.0054540
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--..............................................................................................23151.0051510
......................................................................................................................................GTGTGATTTGTGGCAAAGTGAT.......................................................................................................................................22138.00381622
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGT.................................................................................................22128.0028199
......................................................................................................................................GTGTGATTTGTGGCAAAGTGA........................................................................................................................................21112.0012210
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--T.............................................................................................2419.00990
............................................................................................................................................................................CCCCTTGTTGCAAACCTCA....................................................................................................1919.00981
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATT......................................................................................................................................2316.00633
................................................................................................................................................................................TTGTTGCAAACCTCACGC.................................................................................................1816.00660
..............................................................................................................................................................................CCTTGTTGCAAACCTCACGC.................................................................................................2016.00660
.......................................................................................................................................TGTGATTTGTGGCAAAGTGAT.......................................................................................................................................2115.00541
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGTT--..............................................................................................2314.00440
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACG..................................................................................................2214.00440
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATG......................................................................................................................................2213.00312
...............................................................................................................................................................................CTTGTTGCAAACCTCACG..................................................................................................1813.00330
.............................................................................................................................................................................CCCTTGTTGCAAACCTCAC...................................................................................................1913.00330
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCT--..............................................................................................2213.00330
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGC.................................................................................................2313.00330
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--..............................................................................................2312.00220
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--TT............................................................................................2512.00220
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACT..................................................................................................2112.00220
...............................................................................................................................................................................CTTGTTGCAAACCTCACGC.................................................................................................1912.00220
..............................................................................................................................................................................CCTTGTTGCAAACCTCACG..................................................................................................1912.00220
........................................................................................................ATT-----------TCTGTGCATTTTGGGC.............................................................................................................................................................1911.00110
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCG--A.............................................................................................2311.00110
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGCA--..............................................................................................2211.00110
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGT.................................................................................................2111.00110
.......................................................................................................................................TGTGATTTGTGGCAAAGTGA........................................................................................................................................2011.00101
...........................................................................................................................................................................TCCCCTTGTTGCAAACCTCACGT.................................................................................................2311.00110
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACGA.................................................................................................2111.00110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCA--TG............................................................................................2511.00110
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATTT.....................................................................................................................................2411.00101
......................................................................................................................................GTGTGATTTGTGGCAAAGTGATA......................................................................................................................................2311.00110
.......................................................................................................................................TGTGATTTGTGGCAAAGTGATT......................................................................................................................................2211.00110
......................................................................................................................................GTGTGATTTGTGGCAAAGT..........................................................................................................................................1911.00110
......................................................................................................................................GTGTGATTTGTGGCAAAGTG.........................................................................................................................................2011.00101
.............................................................................................................................................................................CCCTTGTTGCAAACCTCACT..................................................................................................2011.00110
............................................................................................................................................................................CCCCTTGTTGCAAACCTCACGCT--TG............................................................................................2511.00110
.........................................................................................................TT-----------TCTGTGCATTTTGGGC.............................................................................................................................................................1820.50110

Generated: 10/20/2015 at 11:22 PM