dya_211

exon [dyak_GLEANR_1569:2]; CDS [Dyak\GE14894-cds]; exon [dyak_GLEANR_1569:3]; CDS [Dyak\GE14894-cds]; intron [Dyak\GE14894-in]

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCGGAGGAGGAGAAGCAGGCGGAGGCGCCTGGTAGCAATGGTGGCGACAGGTAGGTGGGATCAGTGCTCCGGAAACTCTCCAGCCAGGCCTTGGTCCAATTCCGTAAGAGAACTCATCAATCCTTCCAAATTTGCATGCCTAGTTCAAGAGTTTTTCCATTTAATCAACGTAGCAGTAGTTCGGGGTGACCACTTGAGTCCTTGCTAATCTCGTTTCCTTTTTGCCATTCACAGGCGCGATTCGATTACCGAGGAGATCACAATAACGAGCACCACAAACAGCA ************************************************.(((((((((.....(((((((((.....((((.......)))).....))))).....(((((((((((...........))).)))...)))))..))))..)))))))))...((((((((((...((((((.......))))))...))))))....))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V120 male body	M043 female body	V058 head
.....................................................................................................................................................................................................................................................................AATAACGAGCACCACAAACA...	20	0	1	1.00	1	1	0	0
...................................................................................................................................................................................................................................................GATTACCGAGGAGATCACAAT....................	21	0	1	1.00	1	0	1	0
.........................................................................................................................................................................................................................................GGCGCGATTCGATTACCG.................................	18	0	1	1.00	1	0	1	0
.....................................................................................................................................................................................................................................GACAGGCGCGATTCGATTACCGAGGA.............................	26	1	1	1.00	1	1	0	0
........................................................................................................................................................................................................................................AGGCGCGATTCGATTACCGAG...............................	21	0	1	1.00	1	1	0	0
....................................................................................................................................................................................................................................CGACAGGCGCGATTCGATTACCGAGGA.............................	27	2	1	1.00	1	1	0	0
...........................................................................................................................................................................................................................................CGCGATTCGATTACCGAGGA.............................	20	0	1	1.00	1	1	0	0
........................................GTAGCGAAAGATAGGTGGGA................................................................................................................................................................................................................................	20	3	7	0.14	1	0	1	0
...........................................................................................................................................................................AGCTGTGGTTAGGGGTGAC..............................................................................................	19	3	15	0.07	1	0	0	1
...........................................................................................................................................................................................GACTACTTGCGTCCTTGTT..............................................................................	19	3	20	0.05	1	0	1	0

GGCCTCCTCCTCTTCGTCCGCCTCCGCGGACCATCGTTACCACCGCTGTCCATCCACCCTAGTCACGAGGCCTTTGAGAGGTCGGTCCGGAACCAGGTTAAGGCATTCTCTTGAGTAGTTAGGAAGGTTTAAACGTACGGATCAAGTTCTCAAAAAGGTAAATTAGTTGCATCGTCATCAAGCCCCACTGGTGAACTCAGGAACGATTAGAGCAAAGGAAAAACGGTAAGTGTCCGCGCTAAGCTAATGGCTCCTCTAGTGTTATTGCTCGTGGTGTTTGTCGT ************************************************.(((((((((.....(((((((((.....((((.......)))).....))))).....(((((((((((...........))).)))...)))))..))))..)))))))))...((((((((((...((((((.......))))))...))))))....))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V046 embryo	V058 head	M026 head
..................................................................................................................................................................TGAATTGCATCGTCATCAA.......................................................................................................	19	2	2	0.50	1	1	0	0
................TCCACCTCCGCGGACCAA..........................................................................................................................................................................................................................................................	18	2	5	0.20	1	0	1	0
...........................................................................................................................................................................................CTGTTGAACTCAGGATTG...............................................................................	18	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droYak3	2L:3352414-3352697 -	dya_211	CCGGAGGAGGAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ACTCATC------------------AATC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAACG----------TAGCAGTAGTTCGGGGTG------AC-CAC-----------------TTGAGTCC-TT-----------------------------------------GC-------TAATCTCG---TTTCC-TT-TTTGCCATTC--ACAGGCGCGATTCGATTACCGAGGAGATCACAATAACGAGCACCACA-------------------------------AACAGCA
droEre2	scaffold_4929:3397636-3397921 -	der_1251	CCGGAGGAGGAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGGTGGCGACAGGTAGGTG---CG--------------AG----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATCCCTA------TTC---------ATA----CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGAATG------CC-CCA-----------------TTGAGTCC-TT-----------------------------------------GC-------TAATCTCG---TCT-C-CT-TTTACCA-TTTCACAGGCGCGATTCGATTACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA
droSec2	scaffold_5:1514799-1515080 -		CCGGAGGAGGAG------CTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTT-CGTAAGAGA-------------------------------------TCTCATC------------------AT-C---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTATT--CGAAG----------TAGCAGTAGTTCGGGGTG------CC-CAA-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TCTACCATTC--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA
droSim2	2l:3227569-3227850 -	dsi_10210	CCGGAGGAGGAG------CTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------TCTCATC------------------AT-C---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGGGTG------CC-CAA-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TCTACCATTC--ACAGGCGCGATTCAATCACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA
dm3	chr2L:3367670-3367953 -		CCGGAGGAGGAG------TTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCACCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ACTCATC--------C---------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGGGTG------GC-CAG-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TGTACCATTC--ACAGGCGCGATTCGATTACCGAGGAGATCACGATAACGAGCACTACA-------------------------------AATAGCA
droEug1	scf7180000409554:2728901-2729183 +		CCGGAGGAGGAG------AAGCA---G---GCGG---------------ATG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CCATGCTCCGGAAACTCTCCAGCCA------------GGCGTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTAATC------------------ATACCCAATTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCTGTAGAC-TGATTA------TC-CAC-----------------TTGAATCC-CA-----------------------------------------GC-------TTATTTT----CCT-C-CC-CTTTCCT-TT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACC-------------------------------AACAGCA
droBia1	scf7180000301468:1162448-1162732 +		CCGGAGGAGGAGG---CGAAGCA---G---GCGG---------------ACG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CACTGCTCCGGAAACTCTCCAGCCA------------GGCTCGGGTCCGATTC-CGTAAGAGA-------------------------------------ATTCATC------------------ATAC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CA---ATTTAAT--CGACG----------TAGCTGTAGTT-GGAGTG------TC-CAG-----------------TTGAGCCG-CC-----------------------------------------AA-------TAACATGT---ATT-C-CC-CTTACCAATT--GCAGGCGCGATTCGATCACCGAGGAGATCACCATAACGAGCACCACA-------------------------------AACAGTA
droTak1	scf7180000415914:750173-750460 +		C-GGAGGAGGAG------AAACC---GGATGCGG---------------AGG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCTTGGGTCCAATTC-CGTAAGCGA-------------------------------------ATTCATC------------------GTAC---ATTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAAAG----------TAGCTGTAGTT-GGAGTA------TC-CAA-----------------ATGATCCA-AT-----------------------------------------AT----TAACAATG-C----ATT-C-CC-TTTACCACTT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACCACA----------------------------AACAGCA
droEle1	scf7180000491046:2073740-2074028 -		CCGGAGGAGGAGG---AGGAGCA---G---GCGG---------------AGC---------------------------CGGTAGCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCAA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCATT------------------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAT----------TAGCTGTAGTCGGGGCTA------TC-CAG-----------------TTGACTCGAAT-----------------------------------------AT-------TAATATT----TTT-CGAA-CTTACCA-TT--GCAGGCGCGATTCGATCACCGAGGAGATCACGATCACTAGCACCACA-------------------------------AACAGTA
droRho1	scf7180000777227:217467-217746 -		CCGGTGGAGGA---------GCA---G---GCGG---------------AGC---------------------------CGATAGCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCAA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCTTC------------------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAAAG----------TAGATGTTGTT-GGAGGA------TC-CAG-----------------TTGAGTTG-GT-----------------------------------------TT-------TAAAAT-G---TAC-C-CC-CTTACCA-TT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATCACGAGCACCACA-------------------------------AACAGCA
droFic1	scf7180000453924:1348692-1348980 -		CCGAAGGAGGAG------GAGCA---G---GCGG---------------AGG---------------------------CGGCGGCTGGT---AGCAGTGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCGATGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCACC--------C---------GT-A---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGCTA----------TAGTTGTAGTT-GGAGTG---CCATC-CAG-----------------TTGAGTCC-TT-----------------------------------------GC-------TAAATACT--CT---T-TC-TCTGCCA-TT--GCAGGCGCGATTCGATCACCGAGGAGATCACGATCACGAGCACCACAACA----------------------------AATAGTA
droKik1	scf7180000302679:1472136-1472448 +		CCGGAGGAGGAA---------CT---C---ACGG---------------ATGCCAGGTCCGCTGAGAGGACA---ACGACT---GCTGGT---AGCAATGGTGGCGACAGGTAGGTGTTTGG--------------GT----CAATGCTCCGGGAACTCTCCAGCCA------------GGCCTTGGCCCAATTC-CGTAAGAGATTA----------------------------------AAACATC--------A---------GTAC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CCC--ATTTAATCTCGGTG----------TAGATGTAGTC-GGCGGA------TT-AAA-----------------CAGATCCC-AT---------------------------T-------------AC-------TAATTTCA---TTT-C-CC-ATTGCCA-TT--ACAGGCGCGATTCCATCACCGAGGAGATCACGATTACGAGCACCACA-------------------------------AACGGCA
droAna3	scaffold_12916:13359499-13359800 +		CCGGAGGAGAAGGAGGAGAAGCA---G---GCGG---------------ATGCCAAGTCC------------------------GATGAG---AGCAGTGCTGGCGACAGGTAGGTG---AA--------------AT----G-ATGCTCCGGAAACTCTCCAGCCA------------GGCCATGGTCGAATTC-CGTAAGAGG-------------------------------------ATCCATT------------------ACAGTTTTTTCAAAATTTGCATGCC----TAGTTCAAGAGTTC---TT-----------------------CCAAAATATAAC--CCACG----------TAGTCGTAGCCAAGAGCACCACCATC----------------------CCAGCCA---------------------------------------------CTAATTGGTAATA------CTT-G-AC-TTGATCT-TT--GCAGGCGCGACTCCATCACCGAGGAGATCACGATTACGACCACCACC-------------------------------ACCACCA
droBip1	scf7180000396580:142638-142937 -		CCGGAGGAGAAGG---AGCAGCA---G---GCGG---------------ACGCCAAGTCC------------------------GATGAG---AGCAGTGCTGGCGACAGGTAGGTG---GAAGAAGGTG------AA----CACTGCTCCGGAAACTCTCAAGCCA------------GGCCTTGGCGGAATTC-CGTAAGAGA-------------------------------------ATCCATT------------------ACAG---TTTCCAAATTTGCATGCC----TAGTTCAAGAGTTC---TT-----------------------CCA--ATATAAC--CCACG----------TAGTCGTAGCCCAGAGCA------CCCCAGGTCG-------------T----CCA---------------------------------------------CTAATTGTTAATG------C---C-CG-TGTGTCT-TT--GCAGGCGCGACTCCATCACTGAGGAGATCACGATTACGACCACCACC-------------------------------ACCACCA
dp5	4_group3:6200682-6201022 +		CCGCAGGAGGAG------GAGTATCCGGATCCGGATCAGAGGATCGGAGAAGACAGGCCTGAGGAGAGGGCGGCCGCGGCT---TCTTGT---AGCAACGGTGGCGACAGGTAGGTG---GG--------------ATCATACAGTGCTCAGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATACGTT---------------------T--ATTCCAAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAAAAAATCG---AATTAGTAGTTTAGA-------------------TGGGACTTGGATGTGGAATCT-AT-----------------------------------------AC-------TTATTTCGGGTCTT-C-CC-CCTACCA-TT--GCAGGCGCGATTCCATCACCGAGGAGATCGTAATTACAACAACTACA-------------------------------A------
droPer2	scaffold_1:7693886-7694226 +		CCGCAGGAGGAG------GAGTATCCGGATCCGGATCAGAGGATCGGAGAAGACAGGCCTGAGGAGAGGGCGGCCGCGGCT---TCTTGT---AGCAACGGTGGCGACAGGTAGGTG---GG--------------ATCATACAGTGCTCAGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATACGTT---------------------T--ATTCCAAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAAAAAATCTAATTAGTTG---TTTAGA-------------------TGGGACTTGGATGTGGAATCT-AT-----------------------------------------AC-------TTATTTCGGGTCTT-C-CC-CCTACCA-TT--GCAGGCGCGATTCCATCACCGAGGAGATCGTAATTACAACAACTACA-------------------------------A------
droWil2	scf2_1100000006978:221-512 -		AT-------------------------------------------------------------------------------------------------GCCGCTGACAGGTAGGTG---GAC--TGGTAG----ACT----CTAAGCTCAAGAAACTCTCCAGCCAGGCGGCTTGATG---TGTGCACCAATTTGAGTAAGAT------------------------------GGA-----ATGAATTATT---TTG---------GTAC---AATCAAATTTCGCATGCC----TAGTTCAAGAGTTTTCTTT------------TTACTGTTTTTCA--------------AA-----------------TATTTACCCTTA------GA-CAA-----------------ATGCCTCA-ATATTTGTAATCTAA--------------TTTAATTATATATTGT-------TATA-----------T-AT-TATGCAT-TT--ACAGGCGCGAATCCATCACCGAGGAGATAACCATTACAACTACAACAACT----------------------------AACAACA
droVir3	scaffold_12963:8177290-8177624 -	dvi_10888	CAGCTGGAAGCT------GAGCC---G---GATG---------------AGA---AATG---------------------TACACAAAGTATACACAATAATGGCGACAGGTAGGTC---GA--------------AA-----AGCGCA--------ACTCTGGCCT------------GGTCTAAAACAAATGG-CAAAAAAAAATAAGAGAGAAGAGAGCGTTAAGTAT----AACCCGCATTAG----TTGG-C---------TA-AT---GTACAAAATTTGCATGTCTT--TAGCGCAAGCACTT---TA--------AATTTGAATGCATG-CC---ATATAAT--ATATA----------TA---------------------------------------------CACACTCC-ATA------------GATATTGCTGCGCCTTTTGAACAAGCTGGC-------TATTCACA-GTT---T-TC-TCTCTTG-TT--TTAGGCGCGATTCGATCAGCGATGACAACACAATCAACAGCAGCACA--------------------------------------
droMoj3	scaffold_6500:789767-790129 -		CAAGTGGAAGCT------GAACA---G---GATG---------------ATA---AATA---------------------TATACAAAGT---AGCAATCAAGCTGAAAGGTAGGTA---AAC--TTTGAATCGAAAT----CAAGACTCGAGA----CTCGAGACAGA----------CACCTCGG--TAACTG-GGCAAACG-------------------TTAAGTATATTTAAACCGCTTTCTAT--TTGA-C---------TATCC---ATACGAAATTAGCATGCATTTGTAGTAGAAGCTCCT---CT----------------------------GCACCAC--CAACACACATTTACATGGTCG---TTTATA--------------------------------TAGATTCG-AT---------------------------CTCTGCTACAGACAGC----CACTAAA-T---------A-AATTGCTTTG-TT--TTAGGCGAGATTCGATTGGCGATGACATCACGAGCGCAACAACAACTACCACAG-CAACTGCAGCAACAAACAGCTTCAACGGCA
droGri2	scaffold_15252:7588012-7588340 -		CTGGAAGCTGAA---------CA---G---GATG---------------ATAATAAATC---------------------CACACATAGT---AGCAATAATGGTGACAGGTAGGTGATCAG--------------CT----CACAACTCTTGCCACAGTCCGACCA------------GCCAGA---------------AACG-------------------TTAAGTAT--TTAAGCTGCATTCATT--TT--TCGATTCACACAACTT---GTACAAAATTTGCATGCCTT-CTAGTTCAACATGTT---CTGCACTATAAAT------------------TCTAAA--CTAAAGAAAAG----AAAATATCGAT-TTATAA------T---------------AT-------GTATAT-AG--------------ACAT-A---------ATGA--------GC-------A----------------AC-TCTCTTG-TT--TTAGGCGAGATTCCATCTGTGATGAAATCACAATCACAACTACAACTACTACTGGCAAC-------------------AGCAACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CCGGAGGAGGAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ACTCATC------------------AATC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAACG----------TAGCAGTAGTTCGGGGTG------AC-CAC-----------------TTGAGTCC-TT-----------------------------------------GC-------TAATCTCG---TTTCC-TT-TTTGCCATTC--ACAGGCGCGATTCGATTACCGAGGAGATCACAATAACGAGCACCACA-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGAGCACCACA-------------------------------AACA...	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCGAGGAGATCACAAT...................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCGATTCGATTACCG................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCGATTCGATTACCGAG..............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATTCGATTACCGAGGA............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CCGGAGGAGGAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGGTGGCGACAGGTAGGTG---CG--------------AG----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATCCCTA------TTC---------ATA----CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGAATG------CC-CCA-----------------TTGAGTCC-TT-----------------------------------------GC-------TAATCTCG---TCT-C-CT-TTTACCA-TTTCACAGGCGCGATTCGATTACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................G----CAGTGCTCCGGAAACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCG---TCT-C-CT-TTTACCA-TTTCACAA.................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
....AGGAGGAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGATAACGAGCACCAC.......................................	20	1	1.00	1	0	0	0	0	1	0	0
.........GAG------AAGCA---G---GCGG---------------AGG---------------------------CG---CCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACGAGCACCACA-------------------------------AACAGC.	22	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCGAGGAGATCACGAT...................................................	21	1	1.00	1	0	0	0	0	0	1	0

droSec2

CCGGAGGAGGAG------CTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTT-CGTAAGAGA-------------------------------------TCTCATC------------------AT-C---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTATT--CGAAG----------TAGCAGTAGTTCGGGGTG------CC-CAA-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TCTACCATTC--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGGAGATCACGATAACGA..............................................	23	1	1.00	1	0	1	0	0
...................................................................................................GCTGGCGACAGGTAGGTG---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCGATTCGATCACCGAGG.............................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATCACGATAACGAGCACC.........................................	23	1	1.00	1	0	1	0	0

droSim2

CCGGAGGAGGAG------CTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------TCTCATC------------------AT-C---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGGGTG------CC-CAA-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TCTACCATTC--ACAGGCGCGATTCAATCACCGAGGAGATCACGATAACGAGCACCACA-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................CGGGGTG------CC-CAA-----------------TTGAATCC-GT-----------------------------------------G.............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................CTCCGGAAACTCTCCAGCCA------------GGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................GGT---AGCAATGCTGGCGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
CCGGAGGAGGAG------CTGCA---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

CCGGAGGAGGAG------TTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGCAATGCTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCACCGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ACTCATC--------C---------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCAGTAGTTCGGGGTG------GC-CAG-----------------TTGAATCC-GT-----------------------------------------GC-------TAACCTCG---TTT-C-CT-TGTACCATTC--ACAGGCGCGATTCGATTACCGAGGAGATCACGATAACGAGCACTACA-------------------------------AATAGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................CACCGGAAACTCTCCAGCCA------------GG...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........G------TTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCGAGGAGATCACGATAA.................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGAG------TTGCA---G---GCGG---------------AGG---------------------------CG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCACTACA-------------------------------AATAGC.	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................AGG---------------------------CG---CCTGGT---AGCAATGCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GCATGCC----TAGTTCAAGAG.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................TTGCA---G---GCGG---------------AGG---------------------------CG---CCTGGT---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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CCGGAGGAGGAG------TTGCA---G---GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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......................................................................................TGGT---AGCAATGCTGGCGACAGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGATTACCGAGGAGAT.........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......AGGAG------TTGCA---G---GCGG---------------AGG---------------------------CG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................G---------------AGG---------------------------CG---CCTGGT---AGCAATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CCGGAGGAGGAG------AAGCA---G---GCGG---------------ATG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CCATGCTCCGGAAACTCTCCAGCCA------------GGCGTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTAATC------------------ATACCCAATTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAG----------TAGCTGTAGAC-TGATTA------TC-CAC-----------------TTGAATCC-CA-----------------------------------------GC-------TTATTTT----CCT-C-CC-CTTTCCT-TT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACC-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGGAGGAGGAGG---CGAAGCA---G---GCGG---------------ACG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CACTGCTCCGGAAACTCTCCAGCCA------------GGCTCGGGTCCGATTC-CGTAAGAGA-------------------------------------ATTCATC------------------ATAC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CA---ATTTAAT--CGACG----------TAGCTGTAGTT-GGAGTG------TC-CAG-----------------TTGAGCCG-CC-----------------------------------------AA-------TAACATGT---ATT-C-CC-CTTACCAATT--GCAGGCGCGATTCGATCACCGAGGAGATCACCATAACGAGCACCACA-------------------------------AACAGTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-GGAGGAGGAG------AAACC---GGATGCGG---------------AGG---------------------------CG---GCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCTTGGGTCCAATTC-CGTAAGCGA-------------------------------------ATTCATC------------------GTAC---ATTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAAAG----------TAGCTGTAGTT-GGAGTA------TC-CAA-----------------ATGATCCA-AT-----------------------------------------AT----TAACAATG-C----ATT-C-CC-TTTACCACTT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATAACGAGCACCACCACA----------------------------AACAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGGAGGAGGAGG---AGGAGCA---G---GCGG---------------AGC---------------------------CGGTAGCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCAA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCATT------------------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAT----------TAGCTGTAGTCGGGGCTA------TC-CAG-----------------TTGACTCGAAT-----------------------------------------AT-------TAATATT----TTT-CGAA-CTTACCA-TT--GCAGGCGCGATTCGATCACCGAGGAGATCACGATCACTAGCACCACA-------------------------------AACAGTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCGGTGGAGGA---------GCA---G---GCGG---------------AGC---------------------------CGATAGCTGGT---AGCAATGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCAA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCTTC------------------ATTC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CAAAG----------TAGATGTTGTT-GGAGGA------TC-CAG-----------------TTGAGTTG-GT-----------------------------------------TT-------TAAAAT-G---TAC-C-CC-CTTACCA-TT--ACAGGCGCGATTCGATCACCGAGGAGATCACGATCACGAGCACCACA-------------------------------AACAGCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGAAGGAGGAG------GAGCA---G---GCGG---------------AGG---------------------------CGGCGGCTGGT---AGCAGTGGTGGCGACAGGTAGGTG---GG--------------AT----CAGTGCTCCGGAAACTCTCCAGCCA------------GGCGATGGTCCAATTC-CGTAAGAGA-------------------------------------ATTCACC--------C---------GT-A---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGCTA----------TAGTTGTAGTT-GGAGTG---CCATC-CAG-----------------TTGAGTCC-TT-----------------------------------------GC-------TAAATACT--CT---T-TC-TCTGCCA-TT--GCAGGCGCGATTCGATCACCGAGGAGATCACGATCACGAGCACCACAACA----------------------------AATAGTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGGAGGAGGAA---------CT---C---ACGG---------------ATGCCAGGTCCGCTGAGAGGACA---ACGACT---GCTGGT---AGCAATGGTGGCGACAGGTAGGTGTTTGG--------------GT----CAATGCTCCGGGAACTCTCCAGCCA------------GGCCTTGGCCCAATTC-CGTAAGAGATTA----------------------------------AAACATC--------A---------GTAC---CTTCCAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CCC--ATTTAATCTCGGTG----------TAGATGTAGTC-GGCGGA------TT-AAA-----------------CAGATCCC-AT---------------------------T-------------AC-------TAATTTCA---TTT-C-CC-ATTGCCA-TT--ACAGGCGCGATTCCATCACCGAGGAGATCACGATTACGAGCACCACA-------------------------------AACGGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCGGAGGAGAAGGAGGAGAAGCA---G---GCGG---------------ATGCCAAGTCC------------------------GATGAG---AGCAGTGCTGGCGACAGGTAGGTG---AA--------------AT----G-ATGCTCCGGAAACTCTCCAGCCA------------GGCCATGGTCGAATTC-CGTAAGAGG-------------------------------------ATCCATT------------------ACAGTTTTTTCAAAATTTGCATGCC----TAGTTCAAGAGTTC---TT-----------------------CCAAAATATAAC--CCACG----------TAGTCGTAGCCAAGAGCACCACCATC----------------------CCAGCCA---------------------------------------------CTAATTGGTAATA------CTT-G-AC-TTGATCT-TT--GCAGGCGCGACTCCATCACCGAGGAGATCACGATTACGACCACCACC-------------------------------ACCACCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................GATGAG---AGCAGTGCTGGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.................................G---------------ATGCCAAGTCC------------------------GATGAG---AGCAGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCGAGGAGATCACGATTAT................................................	23	1	1.00	1	0	0	0	0	1	0
......GAGAAGGAGGAGAAGCA---G---GCGG---------------ATGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...........GGAGGAGAAGCA---G---GCGG---------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0
..........AGGAGGAGAAGCA---G---GCGG---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	1	0

droBip1

CCGGAGGAGAAGG---AGCAGCA---G---GCGG---------------ACGCCAAGTCC------------------------GATGAG---AGCAGTGCTGGCGACAGGTAGGTG---GAAGAAGGTG------AA----CACTGCTCCGGAAACTCTCAAGCCA------------GGCCTTGGCGGAATTC-CGTAAGAGA-------------------------------------ATCCATT------------------ACAG---TTTCCAAATTTGCATGCC----TAGTTCAAGAGTTC---TT-----------------------CCA--ATATAAC--CCACG----------TAGTCGTAGCCCAGAGCA------CCCCAGGTCG-------------T----CCA---------------------------------------------CTAATTGTTAATG------C---C-CG-TGTGTCT-TT--GCAGGCGCGACTCCATCACTGAGGAGATCACGATTACGACCACCACC-------------------------------ACCACCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCGCAGGAGGAG------GAGTATCCGGATCCGGATCAGAGGATCGGAGAAGACAGGCCTGAGGAGAGGGCGGCCGCGGCT---TCTTGT---AGCAACGGTGGCGACAGGTAGGTG---GG--------------ATCATACAGTGCTCAGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATACGTT---------------------T--ATTCCAAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAAAAAATCG---AATTAGTAGTTTAGA-------------------TGGGACTTGGATGTGGAATCT-AT-----------------------------------------AC-------TTATTTCGGGTCTT-C-CC-CCTACCA-TT--GCAGGCGCGATTCCATCACCGAGGAGATCGTAATTACAACAACTACA-------------------------------A------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...CAGGAGGAG------GAGTATCCGGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...................................................GACAGGCCTGAGGAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................TCGGAGAAGACAGGCCTGAGGAGAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.......................TCCGGATCCGGATCAGAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CAGGAGGAG------GAGTATCCGGATCCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATCACCGAGGAGATCGT......................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GTAGTTTAGA-------------------TGGGACTTGG.....................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GATCAGAGGATCGGAGAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TCCGGATCAGAGGATCGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GT---AGCAACGGTGGCGACAGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................CAGGCCTGAGGAGAGGGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACCGAGGAGATCGTA.....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCGCAGGAGGAG------GAGTATCCGGATCCGGATCAGAGGATCGGAGAAGACAGGCCTGAGGAGAGGGCGGCCGCGGCT---TCTTGT---AGCAACGGTGGCGACAGGTAGGTG---GG--------------ATCATACAGTGCTCAGGAAACTCTCCAGCCA------------GGCCTTGGTCCAATTC-CGTAAGAGA-------------------------------------ATACGTT---------------------T--ATTCCAAAATTTGCATGCC----TAGTTCAAGAGTTT---TT-----------------------CC---ATTTAAT--CGAAAAAAATCTAATTAGTTG---TTTAGA-------------------TGGGACTTGGATGTGGAATCT-AT-----------------------------------------AC-------TTATTTCGGGTCTT-C-CC-CCTACCA-TT--GCAGGCGCGATTCCATCACCGAGGAGATCGTAATTACAACAACTACA-------------------------------A------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATCACCGAGGAGATCGTA.....................................................	22	1	2.00	2	2	0	0	0	0	0
............................................CGGAGAAGACAGGCCTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T-AT-----------------------------------------AC-------TTATTTCGGGTCT........................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................GACAGGCCTGAGGAGAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................................................GAAGACAGGCCTGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................GT---AGCAACGGTGGCGACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

AT-------------------------------------------------------------------------------------------------GCCGCTGACAGGTAGGTG---GAC--TGGTAG----ACT----CTAAGCTCAAGAAACTCTCCAGCCAGGCGGCTTGATG---TGTGCACCAATTTGAGTAAGAT------------------------------GGA-----ATGAATTATT---TTG---------GTAC---AATCAAATTTCGCATGCC----TAGTTCAAGAGTTTTCTTT------------TTACTGTTTTTCA--------------AA-----------------TATTTACCCTTA------GA-CAA-----------------ATGCCTCA-ATATTTGTAATCTAA--------------TTTAATTATATATTGT-------TATA-----------T-AT-TATGCAT-TT--ACAGGCGCGAATCCATCACCGAGGAGATAACCATTACAACTACAACAACT----------------------------AACAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCATCACCGAGGAGATAAC......................................................	23	2	0.50	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................CATGCC----TAGTTCAAGAGTTTTC........................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGGAGATAACCATTACAACT............................................	23	2	0.50	1	0	0	0	1	0
.........................................................................................................................................................................................................GAT------------------------------GGA-----ATGAATTATT---TTG---------GT...................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATAACCATTACAACTACAACAACT----------------------------.......	27	2	0.50	1	0	1	0	0	0

droVir3

CAGCTGGAAGCT------GAGCC---G---GATG---------------AGA---AATG---------------------TACACAAAGTATACACAATAATGGCGACAGGTAGGTC---GA--------------AA-----AGCGCA--------ACTCTGGCCT------------GGTCTAAAACAAATGG-CAAAAAAAAATAAGAGAGAAGAGAGCGTTAAGTAT----AACCCGCATTAG----TTGG-C---------TA-AT---GTACAAAATTTGCATGTCTT--TAGCGCAAGCACTT---TA--------AATTTGAATGCATG-CC---ATATAAT--ATATA----------TA---------------------------------------------CACACTCC-ATA------------GATATTGCTGCGCCTTTTGAACAAGCTGGC-------TATTCACA-GTT---T-TC-TCTCTTG-TT--TTAGGCGCGATTCGATCAGCGATGACAACACAATCAACAGCAGCACA--------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTCGATCAGCGATGAC...........................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACACAATCAACAGCAGCACA--------------------------------------	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACAATCAACAGCAGCACA--------------------------------------	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGGTC---GA--------------AA-----AGCGCA--------ACTCTGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAGTGGAAGCT------GAACA---G---GATG---------------ATA---AATA---------------------TATACAAAGT---AGCAATCAAGCTGAAAGGTAGGTA---AAC--TTTGAATCGAAAT----CAAGACTCGAGA----CTCGAGACAGA----------CACCTCGG--TAACTG-GGCAAACG-------------------TTAAGTATATTTAAACCGCTTTCTAT--TTGA-C---------TATCC---ATACGAAATTAGCATGCATTTGTAGTAGAAGCTCCT---CT----------------------------GCACCAC--CAACACACATTTACATGGTCG---TTTATA--------------------------------TAGATTCG-AT---------------------------CTCTGCTACAGACAGC----CACTAAA-T---------A-AATTGCTTTG-TT--TTAGGCGAGATTCGATTGGCGATGACATCACGAGCGCAACAACAACTACCACAG-CAACTGCAGCAACAAACAGCTTCAACGGCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...GTGGAAGCT------GAACA---G---GAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTCGATTGGCGATGACATCACGA....................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CG---TTTATA--------------------------------TAGATTCG-AT---------------------------CT..........................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..AGTGGAAGCT------GAACA---G---GATG---------------ATA---AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCGATGACATCACGAG...................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................AACTG-GGCAAACG-------------------TTAAGT...........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................TAAACCGCTTTCTAT--TTGA-C---------TATCC---..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................CAAACG-------------------TTAAGTATATTAC....................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	2	0	0	0	0	0

droGri2

CTGGAAGCTGAA---------CA---G---GATG---------------ATAATAAATC---------------------CACACATAGT---AGCAATAATGGTGACAGGTAGGTGATCAG--------------CT----CACAACTCTTGCCACAGTCCGACCA------------GCCAGA---------------AACG-------------------TTAAGTAT--TTAAGCTGCATTCATT--TT--TCGATTCACACAACTT---GTACAAAATTTGCATGCCTT-CTAGTTCAACATGTT---CTGCACTATAAAT------------------TCTAAA--CTAAAGAAAAG----AAAATATCGAT-TTATAA------T---------------AT-------GTATAT-AG--------------ACAT-A---------ATGA--------GC-------A----------------AC-TCTCTTG-TT--TTAGGCGAGATTCCATCTGTGATGAAATCACAATCACAACTACAACTACTACTGGCAAC-------------------AGCAACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_211

2L:3352464-3352647 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads