ID:

dya_210

 Coordinate:

2L:3347451-3347749 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dyak\GE14894-cds]; exon [dyak_GLEANR_1569:9]; CDS [Dyak\GE14894-cds]; exon [dyak_GLEANR_1569:8]; intron [Dyak\GE14894-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGAGGCCGAGGAGAGGTAAGCATTGCGACTCTAGTCCCAGTAACCAATTAACTACAATGCAACAACCACAACAACAAGAACAACAAAAACAAAAACAAAAACAGCAAATACAGCAGCAAAGCAAAGCAATTTCTTTCTAATATTGTAATGAACATATAAAAAAAAAATCAGAGTTAGAATTCGAAAATAACTGCCAATGCCAATTGCCATTGCTTCTTCTAACCACACCAAAACGCACGCATGCTCACAATAAACATCAAACAACTCGTTAAGAATCAAAAGCAACATCCAGCTACAATCAACATACATCTCAGGCATGAATCAGCAATCCGCCACATCCACGTCGACCACCTCCATCACGACA
**************************************************((.(((((.((((((........)))................(((...........................................))).....((((((((.(((..(((.((((.(((((((.(((.......................))).)))))))...)))).....)))...)))...))))...)))).......................)))))))).))................................(((........)))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 V052
head
 V120
male body		 V058
head
 V046
embryo
............................................................................................................................................................................TAATATTGTAATGACCACAT............................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
...GACCTGCATTCCACCTGCCAAGGGAA.................................................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GAATCAGCAATCCGCCACATCCA....................... 23 0 1 1.00 1 1 0 0 0 0 0
...GACCTGCATTCAACCTGCCAAGGGAA.................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
..........................GAAAGGGACGGAGGCCGAGGA................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0
.....................................................AGCATTGCGACTCGAGTCACT..................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0
.....................CATGGGAAAGGGACGGGGGC...................................................................................................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
.......................AGGGTAAGGGACGGAGGGCC.................................................................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0
.....................CATGGGAAAGGGACGGGGGCA..................................................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.33 2 2 0 0 0 0 0
......................ATGGGAAAGGGACGGGGGC...................................................................................................................................................................................................................................................................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................................................TAATATTGTAAGGAAAATATAG............................................................................................................................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 1
..................................................................................................................................................................................................................AGAATTCGAAGACAACTTCC......................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0

Anti-sense strand reads

GCTCTGGACGTAAGGTGGACGGTTCCCTTTCCCTGCCTCCGGCTCCTCTCCATTCGTAACGCTGAGATCAGGGTCATTGGTTAATTGATGTTACGTTGTTGGTGTTGTTGTTCTTGTTGTTTTTGTTTTTGTTTTTGTCGTTTATGTCGTCGTTTCGTTTCGTTAAAGAAAGATTATAACATTACTTGTATATTTTTTTTTTAGTCTCAATCTTAAGCTTTTATTGACGGTTACGGTTAACGGTAACGAAGAAGATTGGTGTGGTTTTGCGTGCGTACGAGTGTTATTTGTAGTTTGTTGAGCAATTCTTAGTTTTCGTTGTAGGTCGATGTTAGTTGTATGTAGAGTCCGTACTTAGTCGTTAGGCGGTGTAGGTGCAGCTGGTGGAGGTAGTGCTGT
**************************************************((.(((((.((((((........)))................(((...........................................))).....((((((((.(((..(((.((((.(((((((.(((.......................))).)))))))...)))).....)))...)))...))))...)))).......................)))))))).))................................(((........)))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V058
head
 V052
head
 M026
head
 V120
male body		 M043
female body
...................................................................................................................................................................................................................................................................................................................................................................TCGTCGTTACGCGGTGTAG......................... 19 2 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GTAGGTCGATGTTAGTGGTGTCT........................................................ 23 3 2 0.50 1 1 0 0 0 0
............................................................................TTGTTCCATTGATGTTACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 10 0.30 3 3 0 0 0 0
..............................................................................................................................................................................................................................................................ATTGGTGGGGTTTTGGGTG.............................................................................................................................. 19 2 7 0.29 2 0 0 0 1 1
...............................................................................GTTACCTGATGTTACGTT.............................................................................................................................................................................................................................................................................................................. 18 2 7 0.29 2 0 0 2 0 0
............................................................................TTGGTAAATTGGTGTGACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 8 0.25 2 1 1 0 0 0
.....................................................TCGGAACGCTGGTATCAGGG...................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0
...........................................................................ATTGGTTGATTGGTGTGACGTT.............................................................................................................................................................................................................................................................................................................. 22 3 5 0.20 1 1 0 0 0 0
............................................................................TTGGTCCATTGGTGTTACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0
................................................................................................................................................................................................................................................TGGTAATGAAGGAGATTGGT........................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
....................................................................................................................................TTTTGTGGTTTAGGTCGTCGCT..................................................................................................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0
............................................................................TTGGTAGATTGATGTGACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 7 0.14 1 1 0 0 0 0
............................................................................TTGGTATATTGGTGTTACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 7 0.14 1 1 0 0 0 0
............................................................................TTGGTTAATTGTTGTGACGGT.............................................................................................................................................................................................................................................................................................................. 21 3 15 0.13 2 0 2 0 0 0
............................................................................TTGGTCTATTGTTGTTACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0
...........................................................................GTTGGTTTATTGTTGTTACGTT.............................................................................................................................................................................................................................................................................................................. 22 3 12 0.08 1 1 0 0 0 0
.................................................................GATCAGGGTCTTGGGTT............................................................................................................................................................................................................................................................................................................................. 17 2 13 0.08 1 1 0 0 0 0
....................................................................................................................................................................................................................TTCAGCTTTGATTGACGG......................................................................................................................................................................... 18 2 13 0.08 1 0 1 0 0 0
................................................................................................................................................................................................................................................................TGGCGTGGTCTTGCGGGCG............................................................................................................................ 19 3 15 0.07 1 0 0 0 1 0
............................................................................TTGGTCGATTGTTGTTACGTT.............................................................................................................................................................................................................................................................................................................. 21 3 16 0.06 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................ATGTGGGTTTGCGAGCGTA.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
.............................................................................TGGTTTATTGGTGTTACGGT.............................................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2L:3347401-3347799 - dya_210 CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGAGGCCGAGGAGAGGTAAGCATTGCGACTCTAGTCC-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAAAAACAAAAACAAAAACAGCAA----ATACAGCAGCAA--AGCAAAG-------------------CAATTTCT---------------TTCTAA-------------TATTGTAATGAACAT--ATA-----------A--------AAAAAAAATCAGAGTTAG----AATTCGAAAATA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATC----------------------A----AACAACTCGTTAAG--A---A----------TCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACAT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACA
droEre2 scaffold_4929:3392741-3393100 - CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGCGGCCGCGGAGAGGTAAGCATTGCGACTCTAGCCA-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAA-------------TATTGTAATGAACAT--ATC-----------A-----------AGAAATCAGAGTTCG----AATTCGT---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCCCAC--------A---------------------------------A----AAAACATC----------------------A----AACAACTCGTTAAG--A---A----------ACAAAAGCCACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACAT-------------------------------------------------------------------------------------------CCACGTCG------------------ACCACA
droSec2 scaffold_5:1509805-1510175 - CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCG-------------CAGCAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTTATGAACAT--ATG-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACA
droSim2 2l:3222549-3222919 - dsi_9681 CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCG-------------TAGCAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTAATGAACAT--ATA-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACA
dm3 chr2L:3362669-3363048 - CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGACGGCCGAGGAGAGGTAAGCATTGCGACTCTAGACG-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAAATA------------CAGCAA----ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTAATGAACAT--ATC-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAATCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACA
droEug1 scf7180000409554:2733804-2734176 + CGAAACGTGCATTCCGCCTGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATTGCGAACTAAATCA-------------CTATAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATC------TCTAATATTGTAATGAAAAT--ACT-------------------------CGATCAGAACTCA----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C---------------------------------A---CTA---------------------------------AACAACATGTTAAG--A---A----------CCAAAAGCAACA--ACCAGCTACA---ACCAACATAAATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACATCGACCACCACG---ACCAACACCACA
droBia1 scf7180000301468:1167591-1167977 + CGAGACCTGCATTCCACCTGCGAAGGGAAAGGGTCGCAGGCCCCGGAGAGGTAAGCATCGCGACGTGAGTCA-------------CTCTGACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAG------------------AAA----ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TTTTGTAATGAAACT--ACT-----------A-----------CCCAATCAGAACAAT----AATTCGA---TA-------ACCGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAT-C--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATCC---------------------A----AACAACATGTTAAG--A---A----------CC------AACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCTC----------------------------------------------------------------------GACC---------ACCTCAACCACATCGACCAA---CACCACTGCCACCACA
droTak1 scf7180000415914:756978-757323 + CGAGACCTGCATTCCGCCGGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATCGCGACTCAAGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAG-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATC------------TCTGTAATGAAAGT--ACT-------------------------CAATCCGAAATCAATCAAATTCGA---T---------------------------------------------------------------AACCACAC----A----AAA-------------------------------------------------------------------------------------------------------------------------------------CCACGCACGCATGTCCAC--------A---------------------------------ACATCTAAACATC----------------------C----AAGAACATGTTAAG--A---A----------CCCAAAGCCACAAAAACAGCTACAGCAACCAACATAAATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCTC----------------------------------------------------------------------GA------------------CCACATCG---------------ACCACTA-A
droEle1 scf7180000491046:2068182-2068575 - CGAGACCTGCATTCCACCGGCCAAGGGAAAGGGACGCAGACCGAGGAGAGGTAAGCATCGCAACCCAGGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TCTTGTAATGGAATT--AAT-----------A-----------CTAAATCAGAGTTCGA---AATTCGA---TA-------ACTGTCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTCCTAACCACAATC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATC----------------------A----AACAACATGTAAAA--A---AACCAA-AAAACGAAAAGCATCA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------TCACCG----------------------------------------------------------------CCACC---------------GCCACCCCCATATCGAC------A---TCCACCGCAATG
droRho1 scf7180000777227:212287-212651 - CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGTCGCAGACCGAGGAGAGGTAAGCATCGCAACTTAGGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TCTTGTAATGGAATT--ACT-------------------------CAATCAGAATTCA----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCATAC----AAA--AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATC---------------------------AACAACATGTTAAA--A---A----------CCAAAAGCCACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAACAATCCG---------CCACCT-------------------------------------------------------------------------------------------CAACATCGAC------------CACCACAACA
droFic1 scf7180000453924:1343655-1344045 - CGAGACCTGCATTCCGCCGGCGAAGGGAAAGGGCCGCCGGCCGAGGAGAGGTAAGCATCGCGATCTGTGCCA-------------CTGTAACCGATTAACTACAACGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAGCAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATA------CTGAATACTGTAATGAAATT--ACC-------------------------CGATCAGAATCCAA-ATAATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C---------------------------------A---CTAAACATG----------------------A----AACCACCTGTTAAG--A---A----------CCCAAAGCCACA--ACCAGCTACA---AAGAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCATCG----------------------------------------------------------------CCATC---------------GCCACCTCGACCTCGACCTC---G---ACCACCGCCACT
droKik1 scf7180000302679:1477381-1477770 + CGAGACTTGCATTCCGCCGGCCAAGGGCAAGGGACGCAGGCCGAGGCGAGGTAAGCAGTTTGATTTAATTAA-------------C-----------AACTACAATGCAACAAC---CACAACAACAAGAACAACAA------------------CAA----ATACAGCAACAA-TAGCAAAG-------------------CAATTTTC---------------CTCTCAACTTTAAACTTTAAACTGTAATGAAATT--AA-------------------TTCAATTCAATCAGAATCCG----AATTCGA---TA-----ACACTGCCAAA--AGCCAA-T-------------------TGCCAATTGCTTCTTCTAACCTAACAC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------C---------------------------------ACAACTAAACATCAACAT-----------------C----AACATCATGTTAACAACAACAACCACAACAACCAAAAGCCACA--ACCAGCTACAACAACCAACATACATCA---CAGGCATGAAT---CAGCAATCGG---------T-------------------------------------------------------------------------------------------------------------------------AACAACA
droAna3 scaffold_12916:13365118-13365546 + TGAGACGTGCATTCCGCCCGCCAAGGGCAAGGGACGTCGTCCGAGGAGAGGTAAGCACTTAGTTCTAGGGAA-------------CATTA----ACTGACAAGAATGCAACAAC---CACAACAACAAGAACAACAATCA------------CAACAAAATACTACAGCAACAA--TGCAAAG-------------------CAATTATT---------------CCGTAA-------------CTTTATAATGAAAATTTTCCAAATATTTAATATTAA------ATTCGATCTG----------AATGCGA---T------------CCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCGCACA---C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACAAC--------A---------------------------------T---CTGAACATCAACAAC---AATCGATA--CCA-TT----GAATATGTTACCAAA---A----------ACAAAAGCCACA--ACCAGCTACA---ACCAACATACATCA---CAGGCATGAATATCCCTCCATCTGGGACATCAACTGCATC----------------------------------------------------------------------CGACACAG------------CAACTGCGACAAC---C---ACCACCACTACG
droBip1 scf7180000396580:135132-135578 - CGAAACGTGCATTCCGCCCGCCAAGGGCAAGGGACGGCGTCCGCGGAGGGGTAAGCATTTAGTTTTAGGCCA-------------CAACAACCAACTGACAACAGTGCAACAAC---CACAACAACAAGAACAACAATCA------------CAACCA-ATACTACAGCAACAA--TGCAAAG-------------------CAATTCTT---------------CCGTAA-------------TTTTGTAATGAAATT--TCC--ATATTCGATACTAA------ATTTGATCTGAATGCG----AATTCGA---TT---CAACACTGCCAAT---GCCAA-TTGCCA------------ATTGCC-ATTGCTTCTTCTAACCACAC----------AA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------A---------------------------------T-----CAACATCAACAACATCAGTCGATA--CCA-TT----GAATATGCTAAC--A---A----------CC--AAGCCACA--ACCTGCTACA---ACCAACATACATCA---CAGGCATGAAT---CCTCCTTCTGCGACATCAAC---AT---------------------------------------------------------C----CTCATCGGCGAAAACAGCCACTG------C------CACGAC---C---ACCACCACTGCA
dp5 4_group3:6205562-6206003 + dps_1585 CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAA-------------TAACAAACAATTA---ACAATGCAACAAC---CACAACAACAACAAGAACA----------------------------ACAGCAACAA--TGCAAAG-------------------CATAATCT---------------T--TAA-------------TTCTATACAA----------AAATATGGAATAGTAT-AGTCTATTCCATATG----------TATTCTA---TATATTTACACTGCCAAT---GCCAA-TTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAAC---------------AACTGCT------ACAACAAAACCTCC---------AACGAAAACCCA-ATTC--CAATAT-----------------------GCAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATCAA---------CAACAAC----------------------------------------------------------------------GAAAACAGCAACAG------C---------------A---GCAGGGACGACA
droPer2 scaffold_1:7698765-7699206 + CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAA-------------TAACAAACAATTA---ACAATGCAACAAC---CACAACAACAAGAACAAGAA-------------------------CAACAGCAACAA--TGCAAAG-------------------CATAATCT---------------T--GAA-------------TTCTATACAA----------AAATATGGAATAGTAT-AGTCTATTCCATATG----------TATTCTA---TATATTTACACTGCCAAT---GCCAA-TTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAAC---------------AACTGCT------ACAACAAAACCTCC---------AACGAAAACCCA-ATTC--CAATAT-----------------------GCAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATCAA---------CAACAAC----------------------------------------------------------------------GA---------------------AAACAGCAAC---A---GCAGGGACGACA
droWil2 scf2_1100000004945:820585-821075 - dwi_3569 TGAGACTTGTATACCACCGGCCAAGGGTAAAGGACGCCGACCCAGACGTGGTAAGAATTTTTTGTTTATTTCTAACACAAAGTCTAACAAGCAAACAAAACAAAATGCAACAACAACCACAACAACAACATCAACAA---GAAAACCAACAACAACAA----GTACAATCACA---AGAACAA-------------------CAACT------------------------------------------------------------------------------------------------------------------------------TGC-CAAAA-T-------------------TGCCAATTGCTTCTTCTAATCAAAC----C----AAATTAAATACATATGTACATACATACATCTACACGCAAAATCATATTCTAAATCTGAACCATAAACAATTGAAAATTACTTAGAAAAACAAACTATATAAACTACCTACTACCCAATCCACATATATACATCAATACATACACACATGCACACACAAACACACACAC---------------ACCCGCA------ACAAT--------------------CTA-------------------------A--A---A-------CCAACAAAAGCTACA--ACAAGCTACC---AACAACATATA------CAGGCTTAAAT---CAACAAC-AT------CAACAACAAC--------------------------------------------T-------------------------GC---------------------AATCAGATAC---C---ACTGCGACCACA
droVir3 scaffold_12963:8170724-8171076 - dvi_10883 CGAGACCTGCATACCGCCGGCCAAGGGCAAGGGCAGGCGTCCCAGACGTGGTAAGCATTTAGACATTAGCTT-------------TA-------------------GCAACAGC---AACAACAACAACAACAACAA-------------------------TAGCAACAACAAACAGCAATG-------------------CAAT--------------------------------------------AATGTACAT--GAT-----------AAACAAATGCTATTTAATACGAATACA----AATAC--------------ACTTGCAAT---GCCAA-A------------ATGCAATTGCA-ATTGCTTTTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAAA-------CCACAAGAAC---------------AACAGCAACTAGAA----CA-----------------------------ATTC--GC--ATGC---------------------CCAGCTG--CAA--ACTAGCTACA---ACAACCACAC---A---CAGGCCCCAAA---CAGCGACAAT---------TGATTG----------------------------------------------------------------CGGCA---------------GCAACACC---------------A---ACAACAACGACA
droMoj3 scaffold_6680:13465376-13465716 + CCA------------------------------------------------------------------------------------CTGCCTCATGAGCTACATTGCAACAGC---AACAGCAACAACATCAGCAA-------------------------CAGCAGCAACAC--C-AACAG-------------------CAACAACTATGGCAGTAATACTGCGCTCAAC-----------AATCATCATC-----------------------------------------------------------------------ATCATCAAC---AACAG-C-------------------AGCA-AAACTATCATCCCAACACAC----C----CAC---------------------------------------------------------------------------------------------------------------------------------------ACACACGC----CAAC--------A---ACACAAGCTTCAGCTGGAGCCACA------T---CAA----------------------------------------------------------------------------------AACAAC---AACAACAAAAACAACAACACGTGAGCAA---CACCAATACA---------CCA--ACGAAAGCATCGCGAGAGGCAACGCCCACGCGTGAGCAACAGCAGCAGCAGCAGCATGCCACGCCCACCA----GC-GAG------------CAACCACAACAGA---C---ACCAACACGACA
droGri2 scaffold_15252:7583191-7583532 - CGAAACTTGTATACCGCCCGCCAAGGGCAAGGGACGACGGCCAAGACGTGGTAAGCATTCATTCAACAGACA-------------CTAACA-----------TTAAGCAGTAAC---AACAGCAACGAAAA----------------------------------------------GCAATGCAAACAAAACATAACAATGCA-------------------------------------------------------------------------------------AAATCAATATGCG----AATACAA---AT-----ACATTGTCAAT---GCCAAAATGCCAA-----AATGCCATTGCT-ATTGCTTCTTCTAATCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAACTAG--------A---------------------------------G----CAAGCTAC----------------------A----AACTAGCTGTTAAT--T---A----------TAAAAAGA-AC------A---ACAAC-ATCAACA-----CG---CAGGCTTCAAA---C----ATCAG---------CAACAAT--------------------------------------------T---------GGT----TACTTCA---------------G------CAACAATAGTAAC---A---GCAACAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGAGGCCGAGGAGAGGTAAGCATTGCGACTCTAGTCC-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAAAAACAAAAACAAAAACAGCAA----ATACAGCAGCAA--AGCAAAG-------------------CAATTTCT---------------TTCTAA-------------TATTGTAATGAACAT--ATA-----------A--------AAAAAAAATCAGAGTTAG----AATTCGAAAATA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATC----------------------A----AACAACTCGTTAAG--A---A----------TCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACAT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...GACCTGCATTCCACCTGCCAAGGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT---CAGCAATCCG---------CCACAT-------------------------------------------------------------------------------------------CCA.............................2311.00101000000000
..........................GAAAGGGACGGAGGCCGAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGCGGCCGCGGAGAGGTAAGCATTGCGACTCTAGCCA-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAA-------------TATTGTAATGAACAT--ATC-----------A-----------AGAAATCAGAGTTCG----AATTCGT---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCCCAC--------A---------------------------------A----AAAACATC----------------------A----AACAACTCGTTAAG--A---A----------ACAAAAGCCACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACAT-------------------------------------------------------------------------------------------CCACGTCG------------------ACCACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........ATTCCACCTGCCAAGGGAAAGGGACGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
CGAGACCTGCATTCCACCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droSec2
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCG-------------CAGCAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTTATGAACAT--ATG-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................AGGGAAAGGGTCGGCGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
............................AAGGGTCGGCGGCCGAGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.....CGTGCATTCCACCTGCCAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..........ATTCCACCTGCCAAGGGAAAGGGTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
droSim2
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCG-------------TAGCAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTAATGAACAT--ATA-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...GACGTGCATTCCACCTGCCAAGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
...........TTCCACCTGCCAAGGGAAAGGGTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...................................GGCGGCCGAGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
dm3
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGACGGCCGAGGAGAGGTAAGCATTGCGACTCTAGACG-------------CAGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAAATA------------CAGCAA----ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------TTCTAATA-----------TTTTGTAATGAACAT--ATC-------------------------AAATCAGAGTTCG----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAATCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A---------------------------------A----TAAACATG----------------------A----AACCACTCGTTACG--A---A----------CCAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCATCACGACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................GCATTGCGACTCTAGACG-------------CAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGCATTCCACCTGCCAAGGGAAAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTCGACGGCCGAGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................CAAGAACAACAAATA------------CAGCAA----ATACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGACGTGCATTCCACCTGCCAAGGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------A----AACCACTCGTTACG--A---A----------CCA...........................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATTCCACCTGCCAAGGGAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CACCTGCCAAGGGAAAGGGTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCCAAGGGAAAGGGTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCCAGCTACA---ATCAACA............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGGGTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGGGTCGACGGCCGAGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...GACGTGCATTCCACCTGCCAAGGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................TAAGCATTGCGACTCTAGACG-------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCC.........1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------------------------------------------------------------------------------------------CCACGTCGACCAC---C---TCCA........2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACGTC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CACCTGCCAAGGGAAAGGGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................ACAAATA------------CAGCAA----ATACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGGGTCGACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCT---CAGGCATGAAT---CAGCA...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................GGGAAAGGGTCGACGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AC---CACAACAACAAGAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CGAAACGTGCATTCCGCCTGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATTGCGAACTAAATCA-------------CTATAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATC------TCTAATATTGTAATGAAAAT--ACT-------------------------CGATCAGAACTCA----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC----A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C---------------------------------A---CTA---------------------------------AACAACATGTTAAG--A---A----------CCAAAAGCAACA--ACCAGCTACA---ACCAACATAAATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCT-------------------------------------------------------------------------------------------CCACATCGACCACCACG---ACCAACACCACASizeHit CountTotal NormTotal
No Reads
droBia1
CGAGACCTGCATTCCACCTGCGAAGGGAAAGGGTCGCAGGCCCCGGAGAGGTAAGCATCGCGACGTGAGTCA-------------CTCTGACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAG------------------AAA----ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TTTTGTAATGAAACT--ACT-----------A-----------CCCAATCAGAACAAT----AATTCGA---TA-------ACCGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAT-C--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATCC---------------------A----AACAACATGTTAAG--A---A----------CC------AACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCTC----------------------------------------------------------------------GACC---------ACCTCAACCACATCGACCAA---CACCACTGCCACCACASizeHit CountTotal NormTotal
No Reads
droTak1
CGAGACCTGCATTCCGCCGGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATCGCGACTCAAGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAG-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATC------------TCTGTAATGAAAGT--ACT-------------------------CAATCCGAAATCAATCAAATTCGA---T---------------------------------------------------------------AACCACAC----A----AAA-------------------------------------------------------------------------------------------------------------------------------------CCACGCACGCATGTCCAC--------A---------------------------------ACATCTAAACATC----------------------C----AAGAACATGTTAAG--A---A----------CCCAAAGCCACAAAAACAGCTACAGCAACCAACATAAATCT---CAGGCATGAAT---CAGCAATCCG---------CCACCTC----------------------------------------------------------------------GA------------------CCACATCG---------------ACCACTA-ASizeHit CountTotal NormTotal
No Reads
droEle1
CGAGACCTGCATTCCACCGGCCAAGGGAAAGGGACGCAGACCGAGGAGAGGTAAGCATCGCAACCCAGGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TCTTGTAATGGAATT--AAT-----------A-----------CTAAATCAGAGTTCGA---AATTCGA---TA-------ACTGTCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTCCTAACCACAATC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATC----------------------A----AACAACATGTAAAA--A---AACCAA-AAAACGAAAAGCATCA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------TCACCG----------------------------------------------------------------CCACC---------------GCCACCCCCATATCGAC------A---TCCACCGCAATGSizeHit CountTotal NormTotal
No Reads
droRho1
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGTCGCAGACCGAGGAGAGGTAAGCATCGCAACTTAGGCCA-------------CTGTAACCAATTAACTACAATGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAACAA--AGCAAAG-------------------CAATTTCT---------------CTCTAA-------------TCTTGTAATGGAATT--ACT-------------------------CAATCAGAATTCA----AATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCATAC----AAA--AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A---------------------------------A---CTAAACATC---------------------------AACAACATGTTAAA--A---A----------CCAAAAGCCACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAACAATCCG---------CCACCT-------------------------------------------------------------------------------------------CAACATCGAC------------CACCACAACASizeHit CountTotal NormTotal
No Reads
droFic1
CGAGACCTGCATTCCGCCGGCGAAGGGAAAGGGCCGCCGGCCGAGGAGAGGTAAGCATCGCGATCTGTGCCA-------------CTGTAACCGATTAACTACAACGCAACAAC---CACAACAACAAGAACAACAA-------------------------ATACAGCAGCAA--AGCAAAG-------------------CAATTTCT---------------CTCTAATA------CTGAATACTGTAATGAAATT--ACC-------------------------CGATCAGAATCCAA-ATAATTCGA---TA-------ACTGCCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C---------------------------------A---CTAAACATG----------------------A----AACCACCTGTTAAG--A---A----------CCCAAAGCCACA--ACCAGCTACA---AAGAACATACATCT---CAGGCATGAAT---CAGCAATCCG---------CCATCG----------------------------------------------------------------CCATC---------------GCCACCTCGACCTCGACCTC---G---ACCACCGCCACTSizeHit CountTotal NormTotal
No Reads
droKik1
CGAGACTTGCATTCCGCCGGCCAAGGGCAAGGGACGCAGGCCGAGGCGAGGTAAGCAGTTTGATTTAATTAA-------------C-----------AACTACAATGCAACAAC---CACAACAACAAGAACAACAA------------------CAA----ATACAGCAACAA-TAGCAAAG-------------------CAATTTTC---------------CTCTCAACTTTAAACTTTAAACTGTAATGAAATT--AA-------------------TTCAATTCAATCAGAATCCG----AATTCGA---TA-----ACACTGCCAAA--AGCCAA-T-------------------TGCCAATTGCTTCTTCTAACCTAACAC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------C---------------------------------ACAACTAAACATCAACAT-----------------C----AACATCATGTTAACAACAACAACCACAACAACCAAAAGCCACA--ACCAGCTACAACAACCAACATACATCA---CAGGCATGAAT---CAGCAATCGG---------T-------------------------------------------------------------------------------------------------------------------------AACAACASizeHit CountTotal NormTotal
No Reads
droAna3
TGAGACGTGCATTCCGCCCGCCAAGGGCAAGGGACGTCGTCCGAGGAGAGGTAAGCACTTAGTTCTAGGGAA-------------CATTA----ACTGACAAGAATGCAACAAC---CACAACAACAAGAACAACAATCA------------CAACAAAATACTACAGCAACAA--TGCAAAG-------------------CAATTATT---------------CCGTAA-------------CTTTATAATGAAAATTTTCCAAATATTTAATATTAA------ATTCGATCTG----------AATGCGA---T------------CCAAT---GCCAA-T-------------------TGCC-ATTGCTTCTTCTAACCGCACA---C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACAAC--------A---------------------------------T---CTGAACATCAACAAC---AATCGATA--CCA-TT----GAATATGTTACCAAA---A----------ACAAAAGCCACA--ACCAGCTACA---ACCAACATACATCA---CAGGCATGAATATCCCTCCATCTGGGACATCAACTGCATC----------------------------------------------------------------------CGACACAG------------CAACTGCGACAAC---C---ACCACCACTACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................CTG----------AATGCGA---T------------CCAAT---GCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAACAAC---AATCGATA--CC...................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACATCAACTGCATC----------------------------------------------------------------------CG..................................................2011.001100000
..................CGCCAAGGGCAAGGGACGTCGTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
CGAAACGTGCATTCCGCCCGCCAAGGGCAAGGGACGGCGTCCGCGGAGGGGTAAGCATTTAGTTTTAGGCCA-------------CAACAACCAACTGACAACAGTGCAACAAC---CACAACAACAAGAACAACAATCA------------CAACCA-ATACTACAGCAACAA--TGCAAAG-------------------CAATTCTT---------------CCGTAA-------------TTTTGTAATGAAATT--TCC--ATATTCGATACTAA------ATTTGATCTGAATGCG----AATTCGA---TT---CAACACTGCCAAT---GCCAA-TTGCCA------------ATTGCC-ATTGCTTCTTCTAACCACAC----------AA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------A---------------------------------T-----CAACATCAACAACATCAGTCGATA--CCA-TT----GAATATGCTAAC--A---A----------CC--AAGCCACA--ACCTGCTACA---ACCAACATACATCA---CAGGCATGAAT---CCTCCTTCTGCGACATCAAC---AT---------------------------------------------------------C----CTCATCGGCGAAAACAGCCACTG------C------CACGAC---C---ACCACCACTGCASizeHit CountTotal NormTotal
No Reads
dp5
CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAA-------------TAACAAACAATTA---ACAATGCAACAAC---CACAACAACAACAAGAACA----------------------------ACAGCAACAA--TGCAAAG-------------------CATAATCT---------------T--TAA-------------TTCTATACAA----------AAATATGGAATAGTAT-AGTCTATTCCATATG----------TATTCTA---TATATTTACACTGCCAAT---GCCAA-TTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAAC---------------AACTGCT------ACAACAAAACCTCC---------AACGAAAACCCA-ATTC--CAATAT-----------------------GCAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATCAA---------CAACAAC----------------------------------------------------------------------GAAAACAGCAACAG------C---------------A---GCAGGGACGACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....ACGTGTATACCGCCTGCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................CAACAAC---CACAACAACAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610010000000
................................................................................................................................................................................................................................................................................................................................................................GCCATTGCCATTGCC-ATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
........................................................................................................................AACAACAACAAGAACA----------------------------ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAA-------------TAACAAACAATTA---ACAATGCAACAAC---CACAACAACAAGAACAAGAA-------------------------CAACAGCAACAA--TGCAAAG-------------------CATAATCT---------------T--GAA-------------TTCTATACAA----------AAATATGGAATAGTAT-AGTCTATTCCATATG----------TATTCTA---TATATTTACACTGCCAAT---GCCAA-TTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAAC---------------AACTGCT------ACAACAAAACCTCC---------AACGAAAACCCA-ATTC--CAATAT-----------------------GCAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATCAA---------CAACAAC----------------------------------------------------------------------GA---------------------AAACAGCAAC---A---GCAGGGACGACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGAGACTTGTATACCACCGGCCAAGGGTAAAGGACGCCGACCCAGACGTGGTAAGAATTTTTTGTTTATTTCTAACACAAAGTCTAACAAGCAAACAAAACAAAATGCAACAACAACCACAACAACAACATCAACAA---GAAAACCAACAACAACAA----GTACAATCACA---AGAACAA-------------------CAACT------------------------------------------------------------------------------------------------------------------------------TGC-CAAAA-T-------------------TGCCAATTGCTTCTTCTAATCAAAC----C----AAATTAAATACATATGTACATACATACATCTACACGCAAAATCATATTCTAAATCTGAACCATAAACAATTGAAAATTACTTAGAAAAACAAACTATATAAACTACCTACTACCCAATCCACATATATACATCAATACATACACACATGCACACACAAACACACACAC---------------ACCCGCA------ACAAT--------------------CTA-------------------------A--A---A-------CCAACAAAAGCTACA--ACAAGCTACC---AACAACATATA------CAGGCTTAAAT---CAACAAC-AT------CAACAACAAC--------------------------------------------T-------------------------GC---------------------AATCAGATAC---C---ACTGCGACCACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........ATACCACCGGCCAAGGGTAAAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..........................GTAAAGGACGCCGACCCAGACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................CAACAACATCAACAA---GAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100010
droVir3
CGAGACCTGCATACCGCCGGCCAAGGGCAAGGGCAGGCGTCCCAGACGTGGTAAGCATTTAGACATTAGCTT-------------TA-------------------GCAACAGC---AACAACAACAACAACAACAA-------------------------TAGCAACAACAAACAGCAATG-------------------CAAT--------------------------------------------AATGTACAT--GAT-----------AAACAAATGCTATTTAATACGAATACA----AATAC--------------ACTTGCAAT---GCCAA-A------------ATGCAATTGCA-ATTGCTTTTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAAA-------CCACAAGAAC---------------AACAGCAACTAGAA----CA-----------------------------ATTC--GC--ATGC---------------------CCAGCTG--CAA--ACTAGCTACA---ACAACCACAC---A---CAGGCCCCAAA---CAGCGACAAT---------TGATTG----------------------------------------------------------------CGGCA---------------GCAACACC---------------A---ACAACAACGACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................TTAGACATTAGCTT-------------TA-------------------GCAACAGC---AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................A-------------------GCAACAGC---AACAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CAACAGC---AACAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................ACAACAACAACAA-------------------------TAGCAACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
CCA------------------------------------------------------------------------------------CTGCCTCATGAGCTACATTGCAACAGC---AACAGCAACAACATCAGCAA-------------------------CAGCAGCAACAC--C-AACAG-------------------CAACAACTATGGCAGTAATACTGCGCTCAAC-----------AATCATCATC-----------------------------------------------------------------------ATCATCAAC---AACAG-C-------------------AGCA-AAACTATCATCCCAACACAC----C----CAC---------------------------------------------------------------------------------------------------------------------------------------ACACACGC----CAAC--------A---ACACAAGCTTCAGCTGGAGCCACA------T---CAA----------------------------------------------------------------------------------AACAAC---AACAACAAAAACAACAACACGTGAGCAA---CACCAATACA---------CCA--ACGAAAGCATCGCGAGAGGCAACGCCCACGCGTGAGCAACAGCAGCAGCAGCAGCATGCCACGCCCACCA----GC-GAG------------CAACCACAACAGA---C---ACCAACACGACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGCATCGCGAGAGGC........................................................................................................1911.001000100
......................................................................................................CATTGCAACAGC---AACAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000010
..............................................................................................................................................................................................................................................................................................................................................................................................ACACAC----C----CAC---------------------------------------------------------------------------------------------------------------------------------------ACACACGC----C..................................................................................................................................................................................................................................................................................................................................1940.251000010
droGri2
CGAAACTTGTATACCGCCCGCCAAGGGCAAGGGACGACGGCCAAGACGTGGTAAGCATTCATTCAACAGACA-------------CTAACA-----------TTAAGCAGTAAC---AACAGCAACGAAAA----------------------------------------------GCAATGCAAACAAAACATAACAATGCA-------------------------------------------------------------------------------------AAATCAATATGCG----AATACAA---AT-----ACATTGTCAAT---GCCAAAATGCCAA-----AATGCCATTGCT-ATTGCTTCTTCTAATCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAACTAG--------A---------------------------------G----CAAGCTAC----------------------A----AACTAGCTGTTAAT--T---A----------TAAAAAGA-AC------A---ACAAC-ATCAACA-----CG---CAGGCTTCAAA---C----ATCAG---------CAACAAT--------------------------------------------T---------GGT----TACTTCA---------------G------CAACAATAGTAAC---A---GCAACAACAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTAG--------A---------------------------------G----CAAGCTAC----------------------A----AACTAGCT.....................................................................................................................................................................................................................................2611.00110

Generated: 05/17/2015 at 10:04 PM