ID:

dya_20

 Coordinate:

3R:7811378-7811471 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.7 -44.7 -44.7

Flybase annnotation

utr5 [utr5_plus_9676]

No Repeatable elements found

Sense Strand Reads

CGACTATCTCTACCGCCGGATGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTAAATGGCGTTCGACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAGACAAGTGAACTGAAGTAACTGTACGCG

***********************************.....(((((((((..((((.(((((...((((((((((......(((((((((((.....)))))).)))))..........))))))))))...)))))))))..)))).))).)).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 M026

head

 M056

embryo

 V120

male body		 V058

head

 V052

head

 V046

embryo

 SRR1275484

Male prepupae		 SRR1275488

Male larvae
........................................................................................................................GAAGCTCGTCTCTACAGGTATCT................................................... 23 0 1 6948.00 6948 2670 1935 1401 469 216 114 142 1 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATC.................................................... 22 0 1 2748.00 2748 302 1900 449 43 26 12 10 6 0
..................................................CTACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 0 1 515.00 515 311 9 109 11 22 18 28 5 2
........................................................................................................................GAAGCTCGTCTCTACAGGTATCC................................................... 23 1 1 513.00 513 1 144 368 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 23 0 1 359.00 359 212 36 56 2 18 15 11 7 2
........................................................................................................................GAAGCTCGTCTCTACAGGTAT..................................................... 21 0 1 211.00 211 131 32 4 18 15 9 0 2 0
.........................................................................................................................AAGCTCGTCTCTACAGGTATCT................................................... 22 0 1 200.00 200 169 3 8 4 11 1 4 0 0
........................................................................................................................GGAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 121.00 121 1 0 120 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATCT................................................... 23 1 1 108.00 108 107 0 0 0 0 0 1 0 0
..................................................CTACCCTGTAGTTCCGGGCTT........................................................................................................................... 21 0 1 76.00 76 43 14 9 3 4 3 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTT......................................................................................................................... 23 0 1 72.00 72 32 10 19 2 3 4 0 2 0
...................................................TACCCTGTAGTTCCGGGCTTTT......................................................................................................................... 22 0 1 66.00 66 46 11 6 0 2 0 0 1 0
..................................................CTACCCTGTAGTTCCGGGCTTT.......................................................................................................................... 22 0 1 53.00 53 29 7 14 0 2 1 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTT.......................................................................................................................... 21 0 1 46.00 46 30 14 0 1 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTA...................................................... 20 0 1 46.00 46 18 18 0 5 4 1 0 0 0
........................................................................................................................GAAGCTCGACTCTACAGGTATCT................................................... 23 1 1 45.00 45 45 0 0 0 0 0 0 0 0
........................................................................................................................GGAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 44.00 44 0 1 43 0 0 0 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 22 0 1 38.00 38 36 0 0 0 1 1 0 0 0
........................................................................................................................GGAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 31.00 31 0 0 31 0 0 0 0 0 0
........................................................................................................................GAATCTCGTCTCTACAGGTATCT................................................... 23 1 1 31.00 31 1 1 29 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATCG................................................... 23 1 1 29.00 29 2 25 2 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCT............................................................................................................................ 20 0 1 28.00 28 4 16 6 0 0 2 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.................................................. 24 1 1 28.00 28 8 10 7 1 2 0 0 0 0
.........................................................................................................................AAGCTCGTCTCTACAGGTATC.................................................... 21 0 1 24.00 24 21 0 1 0 0 1 0 1 0
........................................................................................................................GAAGCTCGCCTCTACAGGTATCT................................................... 23 1 1 21.00 21 15 1 5 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGGATCT................................................... 23 1 1 21.00 21 1 11 2 3 3 1 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 21.00 21 0 0 21 0 0 0 0 0 0
........................................................................................................................GTAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 20.00 20 0 0 20 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGT....................................................... 19 0 1 20.00 20 5 14 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATC.................................................... 22 1 1 16.00 16 15 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGCATCT................................................... 23 1 1 16.00 16 2 2 2 1 8 0 1 0 0
..................................................CTACCCTGGAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 16.00 16 16 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGAATCT................................................... 23 1 1 15.00 15 0 9 5 1 0 0 0 0 0
........................................................................................................................GAATCTCGTCTCTACAGGTATC.................................................... 22 1 1 14.00 14 0 2 12 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGT....................................................................................................................... 24 0 1 14.00 14 3 4 7 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACATGTATCT................................................... 23 1 1 12.00 12 1 7 1 0 1 2 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTT......................................................................................................................... 21 0 1 12.00 12 11 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATCA................................................... 23 1 1 12.00 12 8 2 0 0 1 1 0 0 0
........................................................................................................................TAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 12.00 12 3 2 4 2 1 0 0 0 0
...................................................TACCCTGTGGTTCCGGGCTTTTG........................................................................................................................ 23 1 1 12.00 12 12 0 0 0 0 0 0 0 0
.........................................................................................................................AAGCTCGTCTCTACAGGTAT..................................................... 20 0 1 11.00 11 10 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGGATC.................................................... 22 1 1 11.00 11 0 7 1 1 1 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACCGGTATCT................................................... 23 1 1 10.00 10 0 0 0 0 10 0 0 0 0
........................................................................................................................GAATCTCGTCTCTACAGGTATCC................................................... 23 2 1 10.00 10 0 0 10 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTT........................................................................................................................... 20 0 1 10.00 10 7 1 0 0 0 2 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGT....................................................................................................................... 25 0 1 9.00 9 0 0 8 1 0 0 0 0 0
........................................................................................................................GAAGCTCGCCTCTACAGGTATC.................................................... 22 1 1 9.00 9 2 4 3 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATAT................................................... 23 1 1 9.00 9 5 0 3 0 0 1 0 0 0
........................................................................................................................GTAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 9.00 9 0 0 9 0 0 0 0 0 0
........................................................................................................................GACGCTCGTCTCTACAGGTATCT................................................... 23 1 1 8.00 8 0 0 8 0 0 0 0 0 0
..................................................CTACCCTGCAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 7.00 7 6 0 1 0 0 0 0 0 0
........................................................................................................................GTAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 7.00 7 0 0 7 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTATACAGGTATCT................................................... 23 1 1 7.00 7 0 0 5 1 1 0 0 0 0
........................................................................................................................GAAGCTCGACTCTACAGGTATC.................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0 0
........................................................................................................................AAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 7.00 7 3 3 0 1 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTAT..................................................... 21 1 1 6.00 6 6 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATGT................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTCCAGGTATCT................................................... 23 1 1 6.00 6 0 0 0 0 5 0 1 0 0
........................................................................................................................GAAGCTCGTCTCTAAAGGTATCT................................................... 23 1 1 6.00 6 0 1 5 0 0 0 0 0 0
.........................................................................................................................AAGCTCGTGTCTACAGGTATCT................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTTTCT................................................... 23 1 1 6.00 6 1 0 5 0 0 0 0 0 0
..........................................................................................................................AGCTCGTCTCTACAGGTATCT................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCGCGTCTCTACAGGTATCT................................................... 23 1 1 5.00 5 0 0 4 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACTGGTATCT................................................... 23 1 1 5.00 5 0 2 3 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGTTATCT................................................... 23 1 1 5.00 5 1 2 2 0 0 0 0 0 0
..................................................CTACCCTGAAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 5.00 5 5 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCCACAGGTATCT................................................... 23 1 1 5.00 5 1 0 1 2 0 0 1 0 0
........................................................................................................................GAAGCTCGTCTCTACAAGTATCT................................................... 23 1 1 5.00 5 0 2 0 1 0 0 2 0 0
........................................................................................................................GAAGCTCGTCTCTATAGGTATCT................................................... 23 1 1 5.00 5 1 1 2 0 0 1 0 0 0
..................................................CTACCCTGTAGTTCCGGGCC............................................................................................................................ 20 1 1 5.00 5 0 4 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTCTCT................................................... 23 1 1 5.00 5 0 1 0 0 2 1 1 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGC....................................................................................................................... 25 1 1 5.00 5 0 0 5 0 0 0 0 0 0
..................................................CTATCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 5.00 5 0 0 5 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCCTTTG........................................................................................................................ 24 1 1 4.00 4 4 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTAC..................................................... 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0
........................................................................................................................GAAGTTCGTCTCTACAGGTATCT................................................... 23 1 1 4.00 4 0 0 3 1 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACACGTATCT................................................... 23 1 1 4.00 4 0 2 2 0 0 0 0 0 0
........................................................................................................................AAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 4.00 4 2 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACCGGTATC.................................................... 22 1 1 4.00 4 0 1 0 0 3 0 0 0 0
........................................................................................................................GAACCTCGTCTCTACAGGTATC.................................................... 22 1 1 4.00 4 0 1 2 1 0 0 0 0 0
........................................................................................................................GAAGCTCGTCCCTACAGGTATCT................................................... 23 1 1 4.00 4 1 2 1 0 0 0 0 0 0
.......................................................................................................................AGAAGCTCGTCTCTACAGGTAT..................................................... 22 0 1 4.00 4 1 0 0 2 0 0 1 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGCATC.................................................... 22 1 1 4.00 4 1 2 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATT.................................................... 22 1 1 4.00 4 1 2 1 0 0 0 0 0 0
........................................................................................................................GACGCTCGTCTCTACAGGTATC.................................................... 22 1 1 4.00 4 0 0 4 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACGGGTATCT................................................... 23 1 1 4.00 4 1 2 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATA.................................................... 22 1 1 4.00 4 1 0 3 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGTCTTTTG........................................................................................................................ 24 1 1 4.00 4 0 0 2 0 1 0 1 0 0
........................................................................................................................GAAGCTCGACTCTACAGGTAT..................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0
........................................................................................................................GAACCTCGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 1 0 2 0 0 0 0 0 0
........................................................................................................................GACGCTCGTCTCTACAGGTATCC................................................... 23 2 1 3.00 3 0 1 2 0 0 0 0 0 0
........................................................................................................................GAAGCTTGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 0 1 0 0 1 1 0 0 0
..................................................CTACCCTGTAGTTCCGGGC............................................................................................................................. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................TTACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 3.00 3 1 0 2 0 0 0 0 0 0
........................................................................................................................CAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................GAACTCGTCTCTACAGGTATCT................................................... 22 2 1 3.00 3 0 0 3 0 0 0 0 0 0
...................................................TACCCTGTGGTTCCGGGCTTT.......................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGA....................................................................................................................... 24 1 1 3.00 3 2 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTAAAGGTATC.................................................... 22 1 1 3.00 3 0 1 2 0 0 0 0 0 0
.......................................................................................................................TGAAGCTCGTCTCTACAGGTATCT................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................TACTCTGTAGTTCCGGGCTTTTG........................................................................................................................ 23 1 1 3.00 3 0 0 3 0 0 0 0 0 0
........................................................................................................................GAAGCCCGTCTCTACAGGTATC.................................................... 22 1 1 3.00 3 0 2 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTACCT................................................... 23 1 1 3.00 3 1 0 1 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTCTC.................................................... 22 1 1 3.00 3 0 1 0 0 2 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTGCAGGTATCT................................................... 23 1 1 3.00 3 2 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAAGTATC.................................................... 22 1 1 3.00 3 0 2 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTATAGGTATC.................................................... 22 1 1 3.00 3 0 2 0 0 0 0 1 0 0
........................................................................................................................TAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 3.00 3 1 0 2 0 0 0 0 0 0
.......................................................................................................................AGAAGCTCGTCTCTACAGGTATCT................................................... 24 0 1 3.00 3 2 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.................................................. 24 0 1 3.00 3 0 0 2 1 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTGCAGGTATC.................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTTTACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGCCTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTTTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGCCTTTTG........................................................................................................................ 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0
..........................................................................................................................AGCTCGTCTCTACAGGTATC.................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................CTCGTCTCTACAGGTATCT................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CTACCCTGGAGTTCCGGGCTTTT......................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGCGCTTTTG........................................................................................................................ 24 1 1 2.00 2 0 0 0 0 1 1 0 0 0
...................................................TACCCTGTGGTTCCGGGCTTTT......................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................AAGCTCGTCTCTACAGGTATCC................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATTT................................................... 23 1 1 2.00 2 0 1 0 0 1 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCT............................................................................................................................ 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTGTCT................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTT........................................................................................................................ 23 1 1 2.00 2 0 0 0 0 0 2 0 0 0
........................................................................................................................GGATCTCGTCTCTACAGGTATCC................................................... 23 3 1 2.00 2 0 0 2 0 0 0 0 0 0
.................................................CCTACCCTGTAGTTCCGGGCTT........................................................................................................................... 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACATGTATCC................................................... 23 2 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTT........................................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGG........................................................ 18 0 1 2.00 2 0 1 0 0 1 0 0 0 0
..................................................CTACCCTGTGGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................GAGCTCGTCTCTACAGGTATCT................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGC............................................................................................................................. 18 0 1 2.00 2 1 0 0 0 0 1 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTC........................................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................AAAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTACC.................................................... 22 1 1 2.00 2 0 1 0 1 0 0 0 0 0
........................................................................................................................GAAACTCGTCTCTACAGGTATCT................................................... 23 1 1 2.00 2 0 1 0 1 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTAG........................................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCTGGCTTTTG........................................................................................................................ 24 1 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACACGTATCC................................................... 23 2 1 2.00 2 0 1 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCATCTCTACAGGTATCT................................................... 23 1 1 2.00 2 0 1 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGCTATCT................................................... 23 1 1 2.00 2 0 0 0 0 2 0 0 0 0
........................................................................................................................GAAGCTCGGCTCAACAGGTATCT................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACATGTATC.................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
.......................................................................................................................AGAAGCTCGTCTCTACAGGTATC.................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................TACCCTGTCGTTCCGGGCTTTTG........................................................................................................................ 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTT........................................................................................................................ 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTTTACAGGTATCT................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCGCGTCTCTACAGGGATCT................................................... 23 2 1 2.00 2 0 0 0 0 1 0 1 0 0
........................................................................................................................GAGGCTCGTCTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGCCTTTTG........................................................................................................................ 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
...................................................TGCCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 23 1 1 2.00 2 0 0 1 0 1 0 0 0 0
........................................................................................................................GAAGCGCGTCTCTACAGGTAT..................................................... 21 1 1 2.00 2 0 0 0 0 1 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGTTATC.................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
..........................................................................TTTAAATGGCGTTCGACGCATTGTCG.............................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTTTCTACAGGTATCT................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................................AAGCTCGTATCTACAGGTATCT................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCCACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................................................CCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGCCTCTACAGGTAT..................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTGG........................................................................................................................ 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGA....................................................................................................................... 25 1 1 2.00 2 0 0 1 0 0 1 0 0 0
...................................................TACTCTGTAGTTCCGGGCTTTTGT....................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAGGCTCGTCTCTACAGGTATCT................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................................GGCGCTCGTCTCTACAGGTATCC................................................... 23 3 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATTT................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCCCTACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................................TACCCTGTAGCTCCGGGCTTTTG........................................................................................................................ 23 1 1 2.00 2 1 0 0 0 1 0 0 0 0
...................................................TACTCTGTAGTTCCGGGCTTTT......................................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.......................................................................................................................CGAAGCTCGTCTCTACAGGTATCT................................................... 24 1 1 2.00 2 1 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTTGTCTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTTTT......................................................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACGGGTCTCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CGACCCTGTCGTTCCGGGCTTTTT........................................................................................................................ 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GCACCTCGCCTCTACAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGAATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTTA....................................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACCAGAATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................TAACCTGTAGTTCCGGGCTTT.......................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................TTAAATGGCGTTCGACGCATTGTCGGA............................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACATGTATCTT.................................................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGATATCC................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGATCGTCTCTACAGGTATT.................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATGC................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGATTT.......................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................ACCCTGTATTTCCGGGCTTTTG........................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................CAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GACGCTCGTCTCTACAGGTAGCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GGATCTCGTCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................CGAAGCTCGTCTCTACAGGT....................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................ACCCTGTAGTTCCGGGCT............................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GGAGCTCGTCTCTACAGGTTTCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................AAAGCTCGGCTCTACAGGCATCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTTTTGT....................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................AGAAGCTCGTCTCTACCGGTAT..................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACATGTAGAT................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTCTGC....................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGTAATTCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGCTATC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CGACCCTGTAGTTCCTGGCTTTTG........................................................................................................................ 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGCAT..................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTGGC........................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................AAAGCTCGTCTCTACAGGCATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................AACCTCGTCTCTACAGGTATCT................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TACTCTGTAGTTACGGGCTTTTG........................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAAGTATCTT.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATGT................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCCCGTCTCTGCAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GAAGCTCTTCTCTACACGTCTCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTG......................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GGAGCTCGTCTCTACAGGCATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TGCCCTGTAGTTCCGGGCTTTT......................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................ATAAGCTCGTCTCTACAGGTATC.................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGCGCGTTTG........................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................TCGTCTCTACAGGTATCT................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATT.................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATCTTGG................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTTT........................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GTAGTTCGTCTCTACAGGTATC.................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGTATTTCCGGGCTTTT......................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAACCTCGTCTCTACATGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGC....................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTGTG........................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CTATCCTGTAGTTCTGGGCTTTTG........................................................................................................................ 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTCCCGGGATCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCGCGGCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................AAGCTCGTGTCTACAGGTAT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGTT...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTC........................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACGGGTCTCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGG....................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CTACCCTGTAGTTCTGGGCTT........................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................AAGCTCGTCTCTACAGGTATCG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACCTGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGGCTCGACAGGTATCT................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................GCCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGTGATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGACTCTACAGGTA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................ACCCTGTACTTCCGGGCTTTTG........................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GGAGCTCGTCTCTACAGCTATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGTAGTCCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTT.......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTAGCT................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................ATACCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TAAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACCGCTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGG....................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................AACCTCGTCTCCACAGGTATCT................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGCTTATACAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTAAAGTTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTGTCTACAGGTATCT................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GAAGCTCGTCGCTACAGGTATCT................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTACAGGTATAT................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CTACCCTGAAGTTCCGGGCTTTT......................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATGTG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCGCGTCTCTAGAGGTTTCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CGACCCTGTAGTTTCGGGCTTTTG........................................................................................................................ 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGAATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CTACCCTGTAGCTCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACACGTAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGTTCGTCTCTACAGGTATC.................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GGATCTCGTCTCTACAGGTATC.................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTAAAGGTATCC................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGCAGTTCCGGGCTTTT......................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................AGCTCGTCTCTACAGGTATCTA.................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................GAAGCTCTTCTCTACAGGTATCT................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................GAACTCGTCTCTACAGGTATCC................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTTCATGTATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCT............................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................TACTCTGTAGTTCCGTGCTTTTG........................................................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................AAGCTCGTCTCTACAGGC....................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TACCCTGTACTTCCGGCCTTTTG........................................................................................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................CTACCCTGTAGGTCCGGGCTT........................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................TACCCTGTCGTTCCGGGCTTTT......................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGATCGTCTCTACAGGGTT..................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................AAGCTCGTATCTACAGGTATC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCATCTCTACAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATG.................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTACGGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTAGTCTCTACAGGGCTCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGGCTCTAAAGGTACCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGGCGCTGCAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................CTACCCTGTCGTTCCGGGCTT........................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGATCGTATCTAGAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GAAGGCCGTCGCTACAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................GAAGCTCGTCTCTAGAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................CTACTCTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACCCTGTGGTTCCGGGCTTTT......................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TAGCCTGTAGTTCCGGGCTTTTG........................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTC........................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGATAT..................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................GAAGCTCGCCTCTACCGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTATTG................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GGAGCTCGTCTTTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................CTACACTGTAGTTCCGGGCTTTTG........................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GAAGCTCGTCTGTACAGGTATCT................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................TGCCCTGTAGTTCCGGGCTTTTGC....................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGC....................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACAGGTGTC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTGTACAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GAAGCTCGTCTCTACACGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCTGATAGAGATGGCGGCCTACCCTAGAGGTTAACATTGCGAGGGCACTGGATGGGACATCAAGGCCCGAAAACAAATTTACCGCAAGCTGCGTAACAGCCTAACGACCGAGCTAATAGTCTTCGAGCAGAGATGTCCATAGAGTGTCCCATCTTTATTTGGAGTTCTGTTCACTTGACTTCATTGACATGCGC

************************************.....(((((((((..((((.(((((...((((((((((......(((((((((((.....)))))).)))))..........))))))))))...)))))))))..)))).))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3R:7811328-7811521 - dya_20 confident CG----ACTATCTCTAC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG--------ACAA-----GTGAAC--TGAAGTAACT----GTACGCG
droEre2 scaffold_4770:2845864-2846056 + der_245 confident CG----GCTATCTCGAC------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG--------CCAA-----GTGAAC--TGATGAAACT----GAAAGCG
droSec2 scaffold_6:2693156-2693351 + dse_361 confident CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTC-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATG-------AAAA-----GTGAAC--TGAAGTAACT----GAAAACG
droSim2 3r:2496105-2496299 + dsi-mir-993 Known_mirbase CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATG-------AAAA-----GTGAAC--TGAAGTAACT----GAAAACG
dm3 chr3R:2602019-2602208 + dme-mir-993 Known_mirbase CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAAT--------ATGA-----GTGAAC--TGAAGTAACT----GAA----
droEug1 scf7180000408928:14386-14578 - CG----ACTATCTCCCC--------------------------------------C--------------------TCCCTTCGGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------CGAA-----GTGAACTCTGAAGT---------------
droBia1 scf7180000302155:2068198-2068376 - CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-CGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-C-GATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACACC--------GGAA-----GTGAAC--TGA------------------
droTak1 scf7180000414682:65280-65461 + CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------A-CC-----GTGAAC--TGATGT---------------
droEle1 scf7180000491278:1385201-1385383 + CG----GCTATCGCGT-------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCT--------CAAA-----GTGATC--TAAAATA--------------
droRho1 scf7180000769958:325-509 + CG----GCTATCTCG-C------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-C-GGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCT--------GAAA-----GTGATA--TCAAA---GTGA---------
droFic1 scf7180000453835:35367-35549 + CG----GCTATCTCGTC------------------------------------------------------------------CGCCGG-A-CGGCATCTCCAATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-C-GACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACACC--------GAAA-----GTGAAC--TGAAAT---------------
droKik1 scf7180000302619:315298-315493 + CG----GCTATCTGCTA--------------------------------------CACCGGAT-----CGGCACACGGACACGCGCACGGACCGGGATCCTCAATAGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-C-GA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTAT--------GAAA-----GTGAA------------------------
droAna3 scaffold_13340:5446701-5446891 - dan_322 confident CG----GCTATCTCCTC------------------------------------------------------------------CGCAGG-A-CACGATCTTCAATTGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATTT-------CGAA-----GTGAA-----AAATGATTGA-----TACG
droBip1 scf7180000396708:3367320-3367485 + CG----GCTATCTCCTA------------------------------------------------------------------CGCCGG-A-CAGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C-------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------TCAA-----GTGA-----GAAATAATTGA-----TGTG
dp5 2:19773757-19773963 - dps-mir-993 Known_mirbase CG----GTTATCAACTA--------------------------------------C--------AATGCAGAATACAGCCCTGTGCGTG-A-TCGGATCTTTGATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCT--------GAAA-----GTGAA-----AAATG---GA-----CGTG
droPer2 scaffold_3:2522161-2522367 - dpe_345 confident CG----GTTATCAACTA--------------------------------------C--------AAAGCAGAATACAGCCCTGTGCGTG-A-TCGGATCTTTGATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCT--------GAAA-----GTGAA-----AAATG---GA-----CGCG
droWil2 scf2_1100000004902:11961146-11961367 + dwi_28 confident AAAAAAGGTATC----CAGTAAGTTGATAATTTTCATTTGTTTTTATTCAAGTTACACCGAAACAAAAAAGA-----------------------------------AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATG------------CCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACAATGACGACATAAAA-----GTGAAT--TAAAA---GTGATTGT-----
droVir3 scaffold_13047:6141830-6141966 - dvi-mir-993 Known_mirbase ------------------------------------------------------------------------------------------------------AACAGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-C-AA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA--------AAAA-----GCGAAT--T--------------------
droMoj3 scaffold_6540:16546174-16546300 - dmo_35 confident ------------------------------------------------------------------------------------------------------AACAGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-C-GA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA--------A-------------------------------------
droGri2 scaffold_14906:11483308-11483452 - dgr_16 confident ------------------------------------------------------------------------------------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-C-AA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACGAAT-------AAAAATCAAGTGCAA--ACAAATAAC------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CG----ACTATCTCTAC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG--------ACAA-----GTGAAC--TGAAGTAACT----GTACGCGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................2316948.0069481935267014011421142164690010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2212748.0027481900302449101226430060
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241515.005159311109281822112050
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231513.00513144136800000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231359.00359362125611151822070
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211211.002113213140915180020
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221200.0020031698411140000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21176.00761443903430000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23172.007210321904320020
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22166.00661146600200010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22153.00537291401200000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21146.00461430000110000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20146.00461818001450000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22138.0038036001100000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................23129.0029252200000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20128.0028164602000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24128.0028108700210000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21124.0024021101000010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19120.0020145000100000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24114.001443700000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................21112.0012011100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23112.001228001100000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20111.0011010000100000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20110.001017002000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2519.00900800010000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2116.00606000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................2015.00540100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2515.00500500000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2114.00440000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2214.00401010020000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2214.00421100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2214.00401300000000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1913.00303000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2413.00302100000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2413.00302001000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2413.00300200010000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2012.00202000000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1912.00202000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2212.00200200000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2312.00200002000000
.........................................................................................................................CCTACCCTGTAGTTCCGGGCTT.................................................................................................................................................2212.00201100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1812.00210000100000
...........................................................................................................................TACCCTGTAGTTCCGGGC...................................................................................................................................................1812.00201001000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTC.................................................................................................................................................2112.00200200000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.......................................................................2312.00220000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2412.00201000100000
..................................................................................................................................................TTT-AAATGGCGTT-C-GACGCATTGTCG.................................................................................................................2612.00202000000000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2112.00202000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2512.00200101000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTTA.............................................................................................................................................2511.00100000100000
...................................................................................................................................................TT-AAATGGCGTT-C-GACGCATTGTCGGA...............................................................................................................2711.00101000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATGC......................................................................2311.00101000000000
............................................................................................................................ACCCTGTAGTTCCGGGCT..................................................................................................................................................1811.00101000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTGGC..............................................................................................................................................2311.00101000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2311.00100000100000
........................................................................................................................................................................................................TCGTCTCTACAGGTATCT......................................................................1811.00101000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTGG...................................................................2611.00101000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2211.00101000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGC..........................................................................1911.00100100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGTT............................................................................................................................................2611.00101000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTC..............................................................................................................................................2311.00100100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG......................................................................2211.00101000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2011.00101000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2411.00110000000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCTA.....................................................................2211.00100000010000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1911.00110000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGC..........................................................................1811.00101000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.......................................................................2211.00100001000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATTG......................................................................2311.00101000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2411.00100100000000
droEre2
CG----GCTATCTCGAC------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG--------CCAA-----GTGAAC--TGATGAAACT----GAAAGCGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................2319851.0098514532606180215260717110
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................221949.009494241261452451350
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221474.00474286478441250
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231366.00366297617712270
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241337.00337255910725310
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211272.0027213317287420
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231184.001844152002260
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23149.00491501010230
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22143.004337110220
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23137.003722450240
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20135.0035140201720
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22135.003532000120
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24126.002612011480
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21123.002319000130
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19121.002160001140
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................22119.001901201330
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22118.001814000130
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21116.001611020120
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21115.001511010210
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................21115.001514000010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................23114.00142010470
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2019.0097010010
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2316.0063003000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................2015.0055000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2415.0052000210
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2415.0053010100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2414.0040030010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2414.0043001000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2114.0044000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1814.0042000110
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1913.0032000100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2113.0031000110
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT........................................................................2413.0031000020
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTC..............................................................................................................................................2313.0031000020
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2212.0021000100
..................................................................................................................................................TTT-AAATGGCGTT-C-GACGC-TTGTCGG................................................................................................................2612.0021000100
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1912.0022000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2412.0021000010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2212.0020000020
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1912.0022000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2211.0010100000
.....................................................................................................................................................................CGC-TTGTCGGATTGCTGGC.......................................................................................................1911.0010000010
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG......................................................................2211.0010001000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2211.0011000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2411.0011000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAA......................................................................2311.0010000010
..................................................................................................................................................TTT-AAATGGCGTT-C-GACGC-TTGTCGGATT.............................................................................................................2911.0010000100
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2511.0011000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAAA.......................................................................2211.0010000100
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.........................................................................2111.0010010000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2311.0011000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTA................................................................................................................................................2211.0011000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTTCT.......................................................................2211.0010000010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAA............................................................................................................................................2611.0011000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATC.......................................................................1811.0011000000
droSec2
CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTC-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATG-------AAAA-----GTGAAC--TGAAGTAACT----GAAAACGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................2313781.0037812143762347529
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................221491.00491321812168
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241435.004352032817430
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231319.00319173179930
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211214.0021413457122
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221162.0016211413728
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22151.00512313510
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20150.00502910110
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23139.003919596
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24130.003021306
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21124.002415702
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19123.002313604
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22122.002221010
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21121.002115312
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21119.001916102
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20116.00169412
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22116.001615100
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................2018.0087100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................2318.0084112
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2417.0070061
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1817.0077000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2116.0065001
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2216.0061500
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2516.0061131
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................2315.0054001
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2014.0044000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.........................................................................2114.0040301
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2313.0032100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2113.0031200
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2013.0033000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG........................................................................2112.0022000
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGT..........................................................................2212.0021100
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2312.0022000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2112.0022000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2512.0020020
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2312.0020020
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2512.0020110
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2012.0022000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1912.0021010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2412.0022000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................2311.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCAA.....................................................................2411.0010100
........................................................................................................................................................................................................TCGTCTCTACAGGTATCT......................................................................1811.0011000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT..........................................................................2011.0010100
.......................................................................................................................................................................CATTGTCGGATTGCTGGC.......................................................................................................1811.0010010
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2011.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTT.........................................................................2011.0011000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTA...............................................................................................................................................2311.0010100
.............................................................................................................................CCCTGTAGTTCCGGGCTT.................................................................................................................................................1811.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAA......................................................................2311.0010001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGTAT.........................................................................2021.0022000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1911.0011000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2311.0010001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT....................................................................2511.0010100
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT........................................................................2411.0010100
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2211.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2211.0010100
..................................................................................................CTCCAATTGTAACGCTCCCGTGACC.....................................................................................................................................................................2511.0010010
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1911.0011000
.................................................................................................................................................................................................CAGAAGCTCGTCTCTACAGGTA.........................................................................2211.0010100
.............................................................................................................................CCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2011.0011000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTG................................................................................................................................................2211.0010010
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2411.0011000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTA.................................................................................................................................................2111.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT....................................................................2511.0011000
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1911.0011000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTAT........................................................................1911.0011000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2111.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGC..........................................................................1911.0010100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2411.0011000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2411.0010100
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2411.0011000
.........................................................................................................................CCTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2511.0010010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTA................................................................................................................................................2211.0011000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2211.0010001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2411.0011000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTTA...................................................................2611.0011000
droSim2
CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATG-------AAAA-----GTGAAC--TGAAGTAACT----GAAAACGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23111421.00114215395210216593450192446830645135004001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................22110888.001088874582299728371232401890901002
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2411076.001076010047102600010100000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231553.005533481129110000000100000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231543.005431407814074665009220900000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................201397.003976626411328500110000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241374.003743845886945901232901500003
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211342.0034215991217446001170401000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................181245.0024520330421400010000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221244.0024414345121122700100111000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................211227.00227132721410700010000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................231206.00206965234801100120100100
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................221163.00163745814411200000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................231142.0014275392800000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................211134.001347136882900000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................201126.0012677294101500000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................191121.0012160214123300000000000
...........................................................................................................................TACCCTGTAGTTCCGGGC...................................................................................................................................................18156.0056201025100000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20149.00492861311000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................19146.0046550003600000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................19134.0034321002800000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................22134.0034911150200000600000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24133.0033198510000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24125.0025183200100000000001
..........................................................................................................................CTACCCTGTAGTTCCGGG....................................................................................................................................................18122.0022001021900000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................25121.0021451000000010100000
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................20120.0020145100000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTC.....................................................................23113.0013000001300000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22111.001120160100100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................2319.00931220000100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2519.00911700000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................2118.00841020100000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGG..........................................................................1917.00752000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2116.00651000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGC..........................................................................1916.00624000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2315.00541000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2415.00514000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2215.00540010000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2415.00532000000000000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATC.......................................................................1814.00440000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2114.00401020100000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2414.00421100000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2513.00310200000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1913.00300001200000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2413.00311010000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2513.00301200000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCC..................................................................................................................................................1913.00330000000000000000
...................................................................................................................................................................GGCGCATTGTCGGATTGC...........................................................................................................1813.00310200000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTA...............................................................................................................................................2313.00321000000000000000
......................................................................................................................................................................GCATTGTCGGATTGCTGGCTCC....................................................................................................2212.00200200000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCG..................................................................................................................................................1912.00211000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCT..................................................................................................................................................1812.00200001100000000000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATC.......................................................................1912.00220000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTC................................................................................................................................................2112.00220000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2012.00200110000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG........................................................................2112.00202000000000000000
...............................................................................................................................CTGTAGTTCCGGGCTTTTG..............................................................................................................................................1912.00200010000010000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCG..................................................................................................................................................2012.00211000000000000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1912.00210100000000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.......................................................................2312.00202000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTC................................................................................................................................................2212.00220000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCAC...................................................................2611.00100000100000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTC.................................................................................................................................................2111.00110000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2411.00110000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCA....................................................................2511.00100000100000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGA..........................................................................1911.00110000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTC...............................................................................................................................................2211.00101000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2211.00101000000000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.........................................................................2111.00100000100000000000
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGG...........................................................................2111.00110000000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2011.00100000100000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT..........................................................................2011.00101000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAA............................................................................................................................................2611.00100010000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGT...........................................................................1811.00110000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2311.00100100000000000000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2211.00101000000000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAG............................................................................1811.00100000100000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTAA..............................................................................................................................................2311.00110000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTC...............................................................................................................................................2311.00110000000000000000
dm3
CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAAT--------ATGA-----GTGAAC--TGAAGTAACT----GAA----SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23138041.0038041000061310056516422406006800001000191763067912010000101034000102000035929422400000000000000000002091851117511650014612064928083498651283173166246928852340163753304012683336661631154715268224414828411446393493637735600000000000230000000700000000000000011321358010193167277217679129362211531000002052001200000100000000000000000034191867817117000132002211700182264700129812701351003215716500221019701002860002220005050000230638924046238347396151120020452814837851213517830900042620002647466131306634634426001240
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2214041.004041000011610023140100200000000002247512300000000001010000000001131000000000000000000020022607160012511413885378303265683964642520901121102561211061151901806727026833340000000000000000000000000000000000008390058007158255267013212000002600000000000000000000000000000000030001050000100051202138300034170150006918000202800000500200001000000004458468601444190201006206592000031160100001900036936511664135000110
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................2112649.002649000064000011100000200000000021284310000000000000001000000063403400000000000000000010012907600041153751411323122211712201110150377522010019302062802533731000000000000000000002000000000000000951600600067501342113019680000021300000000000000000000000000000000010010100020000320102110008110400012700000140000080000100010000000261324660014304000024015290000043000002200036126365211921100000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2311174.00117400000100010000000000001000002020200000000000001000000000002000000000000000000000002301860001312318992510126205010021163603127605070811711312000000000020000000002000000000000000516706910182102023833914000008400000000000000000000000000001000100000000000100122509000002960800037500052104001102711000000000010004812711884010000130212000006000000000001741921020300
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2411070.0010700000000001010000000000100000413614100000000000200000000000101000000000000000000000130141000002330514736011042300000017350511110102020213400000000000010000000100000000000000044580407015161584134621320000026000000000000000000000000000021000000000000000002444010000019605000314800061850000011001000000000000041037058740100009061100000950000001000413541988000120
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221485.00485000010000000000000000000000000147000000000000000000000000403000000000000000000000100500001040013071114900010001111050130401070010000000000000010000000000000000000000010110120012100200140200000002700000000000000000000000000000000000000000000000210410000990600011200000600000200013000100000001117152814510000003096000005100000030001186011105000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221404.00404000010000000000000000000000000450000000000001000000000000000000000000000000000002000000020571551029001225400000108130150810304121123800000000000000000000000000000000000015400540036040110121000008000000000000000000000000000000000001101000000000001100001120300000000010230000000000000000000000101000110000001303200000600000010001121000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCATC....................................................................251277.00277000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021166000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................231242.0024200000000000000000000000000000113100000000000000000000000000000000000000000000000000000000010024180000350001000100007063030212031240000000000000000000000000000000000002228017204311075600000020000000000000000000000000000000000000000000000010000000032010000120001011000001000000000000000010030030000000801200000600000000001010200000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................201185.0018500000000000000000000000000014152122000000000000000000000523000000000000000000000110000001021023140010120002000000000011000100032130000000000000000000000000000000000004803310315440820000060000000000000000000000000000000000000000000610000000000014000000000000020000000000000000000000412300010000001023000000000000000081650002000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................191179.0017900000000000000000000000000007300000000000000000000000000003000000000000000000000000000000010001021100121000000000002000000000011810000000000000000000000000000000000000320210203083012800000400000000000000000000000000000000000000000000000000010000130000010000000200000100000000000000001025002001000050420000030000000000122220232000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................231172.00172000022000002100000000000000000000000000000000000000000000000000000000000000000001000000070030262150001106000040210008001010201010210000000000000000000000000000000000002707007201020400000018000000000000000000000000000000000000000000020000003000001000000010000000000000000000000000000012020010000000104200000500000010001241112000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................211108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023035010000418000000102010803000010103012000000000000000000000000000000000000460800110102020000001000000000000000000000000000000000000000000000000002100001100000000000003000000000000000000000000010000010000000100000000000000000200000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................241102.0010200001000010000000000000000000000000000000000000000000000000000000000000000000000000000000021001203001112100000200010000000010013011000000000000000000000000000000000000110000310003050000006000000000000000000000000000000001000000000031000100310001000000000000000000000000000000000000012010120000000100000000700000020001031210000100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231101.0010100001000011000000000000000000000000000000000000000000000000000000000000000000000200000001300301102001180000000100001041000013020200000000000000000000000000000000000003400000103030400000013000000000000000000000000000000000000000000001000000100000000000000000002000001000000000000000000111010000000201200000000000020000120100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................23184.008400000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000010000000000000000060000000000101000000000000000000000000000000000000042020003010140270000002000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000200000000000202100000000000000000010002000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................24177.0077000000000000000000000000000000000000000000000000000000001822210000000000000000000000000000000000000300001000000100000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000100000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22158.0058000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001300000000000000000002000010001001000000000000000000000000000000000000260710200004040000000000000000000000000000000000000000000000000000000000000003002000000000006000001000000000000000010010000010000000100000400000000000000100000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24147.0047000011000000000000000000000000000000000000000000000000001010000000000000000000000000000000010002300000000000000000000000000001000000000000000000000000000000000000000240100010002020000000000000000000000000000000000000000000100000000000000000002000000001000104000001000000000000000002000031000000001300000200000000000000200000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................22141.0041000011000000000000000000000000000000000000000000000000000000000000000000000000002000000000050010200014600000101000100001000001010000000000000000000000000000000000000100000000001030000002000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000010000000000000000000000000000000000100010000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100000200030000000000000001001000000000000000000000000000000000000000000000760200100100060000003000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000010000000000000000000000000000000000001000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000011000000000000000100000000000000110000000000000000000000000000000000000480100010001000000001000000000000000000000000000000000000000000000000000000001002000001000102000000000000000000000000000010000000200000000000000000001100100100000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................22137.0037000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000010000500000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000002320210000000100200000100000000000520013000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................18137.0037000000000000000040000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000010900000000000000000000000000000000000000000011101050110000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000100000000000000000110001000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................23129.0029000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000400000100000000000000000302000000001014000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000001100000002000000200000200000000000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTC....................................................................25126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000000000220000010000000000002000000000000000000000000000000000000000000000000000100002101000000000000000000000000000000000020010000000000000000000000000000000010200000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................24119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110201300100000100000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000020100000000000000000100000000000100000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................22119.0019000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200006000000000000000000000100001000000000000000000000000000000000000200100010100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000001000000000000000000000000000000000000120200000003010000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000100000100000000001100000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................24117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000092000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................25115.0015000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000003000000000000000000000000000000000000000000000000000000100000000000000001000000000010000000000000000000001000000000000000000200000000000200001000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................24114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000003000000000000000020000000000000000000000000000000000000000000001100000000000000000000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101020000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000300000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2419.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000010000001000000000000000000001000000000000000000000000000000000000000000000100000000000000010000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000001000000000000000000000000000000000000000000000000000000010000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCACAGG................................................................2918.008000000000000000000000000000000000000000000000000000000003410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000100000000000000000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000110100000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT....................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000010000000000000000000000000300000000000
droEug1
CG----ACTATCTCCCC--------------------------------------C--------------------TCCCTTCGGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------CGAA-----GTGAACTCTGAAGT---------------SizeHit CountTotal NormTotal
No Reads
droBia1
CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-CGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-C-GATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACACC--------GGAA-----GTGAAC--TGA------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CG----GCTATCTCGCC------------------------------------------------------------------CGCCGG-A-TGGGATCTCCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------A-CC-----GTGAAC--TGATGT---------------SizeHit CountTotal NormTotal
No Reads
droEle1
CG----GCTATCGCGT-------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCT--------CAAA-----GTGATC--TAAAATA--------------SizeHit CountTotal NormTotal
No Reads
droRho1
CG----GCTATCTCG-C------------------------------------------------------------------CGCCGG-A-TGGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-C-GGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCT--------GAAA-----GTGATA--TCAAA---GTGA---------SizeHit CountTotal NormTotal
No Reads
droFic1
CG----GCTATCTCGTC------------------------------------------------------------------CGCCGG-A-CGGCATCTCCAATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-C-GACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACACC--------GAAA-----GTGAAC--TGAAAT---------------SizeHit CountTotal NormTotal
No Reads
droKik1
CG----GCTATCTGCTA--------------------------------------CACCGGAT-----CGGCACACGGACACGCGCACGGACCGGGATCCTCAATAGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-C-GA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTAT--------GAAA-----GTGAA------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CG----GCTATCTCCTC------------------------------------------------------------------CGCAGG-A-CACGATCTTCAATTGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATTT-------CGAA-----GTGAA-----AAATGATTGA-----TACGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................2317558.0075584651436242044721771
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2212046.0020461359133259127366
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................2111367.0013679929139147179
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241380.0038028890402221
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221372.00372278804379
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231314.00314265612589
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................201142.00142941062417
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231140.0014031350101
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21189.008970301123
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21181.0081533010105
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24179.007934201834
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21166.00666300102
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22150.00503710831
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20148.00484800000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23146.00462950552
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19141.00412310269
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20139.003917207211
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22136.00362500542
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22134.00343400000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23125.00251710025
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20123.00231600520
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................21114.00141400000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................22113.0013900112
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24113.0013520231
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................22110.0010300232
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................2319.009210015
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2018.008800000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG........................................................................2117.007000133
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2516.006000240
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1916.006300003
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2016.006510000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2115.005500000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1815.005400001
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2114.004400000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2414.004300001
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTAT........................................................................1914.004400000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2113.003100002
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT....................................................................2513.003300000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2313.003300000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2513.003300000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2413.003200010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2113.003010020
......................................................................................................................................................................................................GCTCGTCTCTACAGGTAT........................................................................1813.003300000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2413.003200001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2413.003300000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTA.................................................................................................................................................2113.003100101
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGT..........................................................................1812.002200000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG......................................................................2212.002200000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2012.002200000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2212.002200000
...............................................................................................................................CTGTAGTTCCGGGCTTTTG..............................................................................................................................................1912.002200000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTG................................................................................................................................................2212.002200000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2212.002100010
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2312.002200000
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1912.002200000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2312.002100001
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1912.002200000
.......................................................................................................................................................TATTGCGTT-C-GATGCATTGTCG.................................................................................................................2211.001000010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.......................................................................2211.001100000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1911.001100000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2311.001000100
........................................................................................................................................................................................................TCGTCTCTACAGGTATCT......................................................................1811.001100000
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTA.........................................................................2311.001000010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGGC.........................................................................2011.001000100
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2211.001010000
.............................................................................................................................CCCTGTAGTTCCGGGCTTT................................................................................................................................................1911.001100000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTG................................................................................................................................................2111.001000001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTA...............................................................................................................................................2211.001000100
droBip1
CG----GCTATCTCCTA------------------------------------------------------------------CGCCGG-A-CAGGATCTTCAATTGTAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C-------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATT--------TCAA-----GTGA-----GAAATAATTGA-----TGTGSizeHit CountTotal NormTotal
No Reads
dp5
CG----GTTATCAACTA--------------------------------------C--------AATGCAGAATACAGCCCTGTGCGTG-A-TCGGATCTTTGATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCT--------GAAA-----GTGAA-----AAATG---GA-----CGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23110270.0010270118701713136043143645080032
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2212063.00206312811272683621151850130
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231831.008314706111123621058
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241775.007750661133252990134
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231522.0052212342175020000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211510.00510143331831533004
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221509.005090433198141817000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................211304.00304927515085001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................211146.00146413810012000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221132.00132282732507024
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................221130.00130212021021002
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20183.008386702013002
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23181.008126333042004
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22176.007607010010004
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20170.007006601030000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21160.006005701002000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20154.005414700014001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24146.004613331152000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................21136.003603501000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20124.002402400000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19124.002401821012000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23114.00140920030000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................19112.00121901010000
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................20111.001101100000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24111.00111510021001
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................25111.00110620000003
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2119.0090900000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2418.0081600000001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2317.0070310000030
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1916.0060600000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2116.0060015000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2216.0060042000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1815.0050410000000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2015.0050410000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2015.0050500000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2414.0040400000000
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1914.0040400000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................2314.0040021001000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2413.0030201000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2213.0030012000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2113.0030300000000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2113.0030300000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2213.0030100002000
...............................................................................................................................CTGTAGTTCCGGGCTTTTG..............................................................................................................................................1913.0030200000001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2413.0030300000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTT.........................................................................2013.0030300000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.......................................................................2313.0030300000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2412.0020100100000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTC................................................................................................................................................2212.0020011000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAG............................................................................1712.0020000000002
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2312.0020200000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2312.0020110000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2412.0020100100000
..........................................................................................................................CTACCCTGTAGTTCCGGG....................................................................................................................................................1812.0021001000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT....................................................................2512.0020010001000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2412.0020101000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2212.0020200000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAC......................................................................2312.0020011000000
................................................................................................................................TGTAGTTCCGGGCTTTTG..............................................................................................................................................1811.0010100000000
........................................................................................................................................................................................................TCGTCTCTACAGGTATCT......................................................................1811.0010100000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTG................................................................................................................................................2111.0010100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................2011.0011000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGTTT-..........................................................................................................................................2611.0010000000001
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTA...............................................................................................................................................2311.0010100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGA...................................................................................................................................................1911.0010100000000
............................................................................................................................ACCCTGTAGTTCCGGGCT..................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGA..........................................................................1911.0010000010000
.........................................................................................................................CCTACCCTGTAGTTCCGGGCTT.................................................................................................................................................2211.0010100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2511.0010001000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGTT............................................................................................................................................2511.0010001000000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTAT........................................................................1811.0010100000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTC...............................................................................................................................................2211.0010001000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG.....................................................................2311.0010100000000
.........................................................................................................................CCTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2511.0010100000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2311.0010100000000
..............................................................................................................................CCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2011.0010100000000
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTATCT......................................................................2611.0010000001000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................CGTCTCTACAGGTATCT......................................................................1711.0010000000001
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATC.......................................................................1811.0010100000000
..........................................................................................................................CTACCCTGTAGTTCCGGGTA..................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1911.0010100000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG....................................................................2511.0010100000000
droPer2
CG----GTTATCAACTA--------------------------------------C--------AAAGCAGAATACAGCCCTGTGCGTG-A-TCGGATCTTTGATTGCAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCT--------GAAA-----GTGAA-----AAATG---GA-----CGCGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................2313263.003263560115275239398839
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................221682.0068228318154171101
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211185.001851800133556
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231159.001592478127218
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241146.00146882515315
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221108.00108065910195
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21143.0043101304142
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20136.00361690281
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................23123.00231901120
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23123.00236110141
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22116.00160121111
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22115.0015572100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23113.0013091300
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24112.0012230232
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21112.0012150330
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20111.0011030035
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21110.00100100000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22110.0010090010
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1918.008440000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................2018.008240011
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................1918.008510011
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2117.007070000
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................2017.007700000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................2316.006600000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2416.006500100
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2015.005050000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2214.004010012
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1814.004310000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2213.003000201
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2513.003210000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1912.002020000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2112.002020000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1912.002020000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2412.002020000
..........................................................................................................................CTACCCTGTAGTTCCGGG....................................................................................................................................................1812.002200000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2512.002100010
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2011.001010000
...........................................................................................................................TACCCTGTAGTTCCGGGC...................................................................................................................................................1811.001010000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG........................................................................2111.001000010
..................................................................................................................................................TTT-ATATTGCGCT-C-GATGTATTTTCG.................................................................................................................2611.001000001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTC.........................................................................2011.001000010
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTA.........................................................................1811.001010000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2311.001000100
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATC.......................................................................1911.001010000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2511.001000100
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2211.001010000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2411.001000100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.......................................................................2211.001010000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2111.001010000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2311.001010000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2111.001000001
droWil2
AAAAAAGGTATC----CAGTAAGTTGATAATTTTCATTTGTTTTTATTCAAGTTACACCGAAACAAAAAAGA-----------------------------------AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATG------------CCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACAATGACGACATAAAA-----GTGAAT--TAAAA---GTGATTGT-----SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23113100.00131005337304251817992404
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2216121.00612154743675459167
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231705.0070524738564819
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211313.003138714919751
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221286.00286316443778
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241271.00271231822559
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231222.002222133024
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221143.001437663103
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21192.00925734100
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21183.00834238201
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22175.0075567030
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22161.00612237002
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24153.005322142411
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................23148.0048471000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20142.0042319200
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19132.0032244103
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23131.00311311052
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24130.0030197121
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20122.0022184000
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20121.0021173001
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21115.0015014001
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................21113.0013012001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................24112.0012111000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................21111.001119010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23111.001144012
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................20110.001028000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................18110.001028000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2219.00902034
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1918.00815002
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2518.00842020
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2417.00761000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1916.00660000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2116.00606000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2015.00505000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2515.00532000
..................................................................................................................................................TTTTAAAGTGCATTTCCGATG------------.............................................................................................................2114.00400004
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................2014.00440000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2214.00440000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2313.00312000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2013.00302001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGC..........................................................................1913.00330000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2413.00321000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2312.00202000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2312.00211000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2212.00210001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2112.00220000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2112.00202000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTC...............................................................................................................................................2212.00211000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2012.00211000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTC................................................................................................................................................2211.00110000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGAA............................................................................................................................................2511.00110000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2411.00100100
................................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGA..........................................................................2211.00101000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2511.00110000
...........................................................................................................................TACCCTGTAGTTCCGGGCTC.................................................................................................................................................2011.00110000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG.....................................................................2311.00101000
..............................................................................................................................CCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2011.00101000
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1911.00101000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1911.00101000
...............................................................................................................................CTGTAGTTCCGGGCTTTTG..............................................................................................................................................1911.00101000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGG..........................................................................1911.00110000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTC................................................................................................................................................2111.00110000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG........................................................................2111.00110000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2311.00110000
..........................................................................................................................CTACCCTGTAGTTCCGGGCG..................................................................................................................................................2011.00110000
..............................................................................................................................................................................................TATCAGAAGCTCGTCTCTACAGGTAT........................................................................2611.00100001
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2411.00110000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2411.00100010
..........................................................................................................................CTACCCTGTAGTTCCGGG....................................................................................................................................................1811.00110000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2411.00100010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2411.00110000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTTC........................................................................2111.00101000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.......................................................................2311.00110000
...............................................................................................................................CTGTAGTTCCGGGCTTTT...............................................................................................................................................1811.00110000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.........................................................................2111.00100010
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG....................................................................2511.00101000
........................................................................................................................................................................................................TCGTCTCTACAGGTATCT......................................................................1811.00101000
droVir3
------------------------------------------------------------------------------------------------------AACAGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-C-AA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA--------AAAA-----GCGAAT--T--------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23110605.001060590611202251388010001000092433522050836829304358280002025250200121002400001133151316178470183823113110023729191067176561629363751
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2213852.003852101412034091060000000000106484083582405613300000000200000000011000021225163263837138480001100360133500200
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2311147.001147151733110000000000010660531227753012913900010001000001200000000000000001001039100000009021101001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211681.006814621181000000000005534263140260418500000110200000000000000000000000000013433000000022000000010
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241618.0061838205700000000006941205128330437500000100100000000000000000001010000485100300007000100011
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221265.0026582511210000000000108123840168000000001000001000000000000011000001022000000040000000001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231203.002033478085000000000000000001300000000000000001000000000000000000000100000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................231188.001885267810000000000695432056000000000000000000000000000000101014001000000029000001000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................221177.001771087100200000001075141250151400100000000000000000000000000000000010000000002000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221176.00176111320000000000092352008600000000000000000000000000000000000015100000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................211156.0015681281000000000009135320102000000000000000000000000000001000013022000000011000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................221143.00143985900000000000674251075000000000000000000000000000101040205010000010013000200000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................211123.0012314244310000000000741130023000000000000000000000000000000200010033000000011000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24189.0089742020000000000861526081000000000000000000000000000000000000102200000005000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20174.00741313260000000000030203001000000000000000000000000000000000000105300000004000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20149.004967180000000000000102202000000000000000000000000000000000001003000000007000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19148.0048613101000000000010012001400000000000000000000000000000000000002100000006000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................23146.00460020000000000031487509600000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................23137.0037121800000000000001001000100000000000000000000000000000000000101000000002000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................20135.003542150000000000000010000000000000000000000000000000000000001100000000002000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21127.002700250000000000000020000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................21126.002610180000000000011200000000000000000000000000000000000000000000000000003000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23123.002310100000000000031001100300000000000000000000000000000000000001100000001000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24119.00190310000000000012000103200000000000000000000000000000000000101100000003000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................24113.00135350000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................25112.00122011000000000010020000000000000000000000000000000010000000100000000021000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20112.00120080000000000020100000000000000000000000000000000000000000001000000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................20111.00110080000000000000000000000000000000000000000000000000000000100000000002000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................18110.00105040000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2119.0090180000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2119.0090080000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2319.0090020000000000011120000100000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2218.0080230000000000020010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2218.0080020000000000000021000100000000000000000000000000001000000001000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2418.0080010000000000000021201100000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2415.0051000000000000000000000100000000000000000000000000000010000000000000002000000000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCC..................................................................................................................................................2014.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................2414.0040010000000000000002000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2113.0031010000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGC...................................................................................................................................................1813.0030200000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2213.0030102000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2513.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1913.0030110000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2213.0030010000000000001000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2013.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT....................................................................2513.0030020000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTAT........................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2512.0021000000000000000000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CTGTAGTTCCGGGCTTTTG..............................................................................................................................................1912.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATC.......................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CCTGTAGTTCCGGGCTTTT...............................................................................................................................................1912.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCA..................................................................................................................................................2012.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGTAGTTCCGGGCTTTTG..............................................................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2312.0020000000000000001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCG..................................................................................................................................................2012.0021000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2112.0021001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGC..........................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCC..................................................................................................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTC..............................................................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGG....................................................................................................................................................1812.0020000000000000010000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTGT..............................................................................................................................................2311.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTA..............................................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTCC.............................................................................................................................................2411.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG.............................................................................................................................................2411.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGA..........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTG................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAAA-..........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................CCCTGTAGTTCCGGGCTTT................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT..........................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------AACAGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-C-GA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA--------A-------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................23111045.0011045452729421730743271373
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................2211737.00173758633545914154
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC......................................................................231921.0092100019182
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................211869.008696043405113158
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................241555.00555431211716664
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................231507.00507415179144210
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................221276.00276249354105
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................221114.0011410501161
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................21196.00968202291
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21188.00886908542
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23179.00797000072
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22176.00767400020
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................20172.007235065521
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................22171.00716003341
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................24150.0050222121310
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................21139.00393601020
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................20134.00343400000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................19132.003215022013
...........................................................................................................................TACCCTGTAGTTCCGGGCTT.................................................................................................................................................20124.00242400000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................25120.0020630155
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC.....................................................................24120.00201100162
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................23117.00171001015
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................24115.0015900024
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................21115.00151500000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................21110.0010900010
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2219.009410004
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC......................................................................2218.008000080
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.......................................................................2217.007100024
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG......................................................................2316.006100050
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1816.006401010
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2415.005400001
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.......................................................................2215.005101030
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................2015.005301100
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA........................................................................2115.005000203
............................................................................................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................................................2015.005500000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC........................................................................2114.004000130
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2414.004400000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2114.004400000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2414.004202000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2514.004000040
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT....................................................................2513.003100110
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAC......................................................................2313.003000030
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2313.003200010
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1913.003300000
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1913.003100020
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATTC......................................................................2312.002000020
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATC.......................................................................1812.002200000
...........................................................................................................................TACCCTGTAGTTCCGGGC...................................................................................................................................................1812.002200000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2412.002200000
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1912.002200000
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTGG...............................................................................................................................................2312.002200000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTT..............................................................................................................................................2312.002200000
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTG...............................................................................................................................................2212.002100010
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2012.002100010
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC.............................................................................................................................................2412.002000020
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA.....................................................................2412.002200000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT.....................................................................2311.001100000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATC.......................................................................1911.001100000
.................................................................................................................................................................................................CAGAAGCTCGTCTCTACAGGTA.........................................................................2211.001000001
..............................................................................................................................................................TA-C-GA-----------ATGCCATTGTCAATTATCA.............................................................................................2411.001000010
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG.....................................................................2311.001100000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATGCG.....................................................................2411.001100000
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGT..........................................................................1811.001100000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTGC....................................................................2511.001100000
...........................................................................................................................TACCCTGTAGTTCCGGGCT..................................................................................................................................................1911.001100000
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCC......................................................................2011.001000010
..............................................................................................................................CCTGTAGTTCCGGGCTTTT...............................................................................................................................................1911.001100000
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2211.001100000
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.......................................................................2011.001100000
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.......................................................................2211.001100000
droGri2
------------------------------------------------------------------------------------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-C-AA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACGAAT-------AAAAATCAAGTGCAA--ACAAATAAC------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT......................................................................231605.0060556540
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.......................................................................22169.0069627
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................24159.0059572
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................23158.0058553
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT......................................................................22146.0046460
..........................................................................................................................CTACCCTGTAGTTCCGGGCTT.................................................................................................................................................21121.0021201
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT........................................................................21120.0020182
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................22116.0016160
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................22113.0013130
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................23112.0012111
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.........................................................................2018.00880
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT.....................................................................2418.00871
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................................................2215.00550
..........................................................................................................................CTACCCTGTAGTTCCGGGCT..................................................................................................................................................2014.00431
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.......................................................................2114.00440
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGT..........................................................................1913.00330
..........................................................................................................................CTACCCTGTAGTTCCGGGC...................................................................................................................................................1913.00330
...........................................................................................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................................................2112.00220
...........................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2412.00211
.....................................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT......................................................................2112.00220
............................................................................................................................ACCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2112.00220
......................................................................................................................................................................................................GCTCGTCTCTACAGGTATCT......................................................................2011.00110
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA.............................................................................................................................................2511.00110
.............................................................................................................................CCCTGTAGTTCCGGGCTTTT...............................................................................................................................................2011.00110
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT........................................................................2011.00110
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTC..............................................................................................................................................2111.00110
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT........................................................................2211.00101
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGG...........................................................................1811.00110
............................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2311.00110
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA......................................................................2311.00101
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.........................................................................1911.00110
.............................................................................................................................CCCTGTAGTTCCGGGCTTTTG..............................................................................................................................................2111.00110
..................................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT......................................................................2411.00110
.......................................................................................................................................................................................................CTCGTCTCTACAGGTATCT......................................................................1911.00110
................................................................................................................................TGTAGTTCCGGGCTTTTG..............................................................................................................................................1811.00110
..........................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT.............................................................................................................................................2511.00101
....................................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG......................................................................2211.00110
............................................................................................................................ACCCTGTAGTTCCGGGCTT.................................................................................................................................................1911.00110
...................................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG.....................................................................2411.00110

Generated: 10/20/2015 at 07:39 PM