ID:

dya_170

 Coordinate:

2L:3769306-3769373 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.7 -18.4

Flybase annnotation

intron [Dyak\GE18256-in]; utr5 [utr5_plus_556]; CDS [Dyak\GE18256-cds]; CDS [Dyak\GE18256-cds]

No Repeatable elements found

Sense Strand Reads

CAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCATTCTCTCACATCACTTCCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCT

**************************************************..(((((((...((((...(((((.((((((...))))..))..)))))...))))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M026

head

 M043

female body

 V058

head

 V052

head

 M056

embryo

 V046

embryo

 V120

male body		 SRR1275484

Male prepupae		 SRR1275488

Male larvae
................................................................................................TCTCACATCACTTCCCTCACAG.................................................. 22 0 1 781.00 781 352 300 37 26 27 36 3 0 0
..................................................GTTGGGGGACATTGATCTCGGAGA.............................................................................................. 24 0 1 402.00 402 331 3 15 8 26 11 8 0 0
................................................................................................TCTCACATCACTTCCCTCACA................................................... 21 0 1 109.00 109 38 48 6 11 5 0 1 0 0
..................................................GTTGGGGGACATTGATCTCGGAG............................................................................................... 23 0 1 107.00 107 26 4 38 24 3 0 10 1 1
.................................................................................................CTCACATCACTTCCCTCACAGT................................................. 22 0 1 36.00 36 2 9 12 8 2 2 1 0 0
..................................................GTTGGGGGACATTGATCTCGGAGG.............................................................................................. 24 1 1 35.00 35 35 0 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGA................................................................................................ 22 0 1 29.00 29 8 4 8 3 0 1 5 0 0
................................................................................................TCTCACATCACTTCCCTCAC.................................................... 20 0 1 22.00 22 8 8 3 3 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACAG.................................................. 21 0 1 19.00 19 1 18 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGAA............................................................................................. 25 1 1 16.00 16 14 0 0 1 0 1 0 0 0
..................................................GGTGGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 12.00 12 0 0 0 0 12 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGC.............................................................................................. 24 1 1 11.00 11 9 0 1 0 1 0 0 0 0
................................................................................................TCTCACATGACTTCCCTCACAG.................................................. 22 1 1 9.00 9 0 9 0 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACA................................................... 20 0 1 8.00 8 1 7 0 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAC.................................................. 22 1 1 8.00 8 7 1 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGACG............................................................................................ 26 0 1 7.00 7 6 0 1 0 0 0 0 0 0
..................................................................................................TCACATCACTTCCCTCACAGT................................................. 21 0 1 6.00 6 0 2 2 2 0 0 0 0 0
................................................................................................TCTCACATAACTTCCCTCACAG.................................................. 22 1 1 6.00 6 0 6 0 0 0 0 0 0 0
..................................................GTTGGGGGCCATTGATCTCGGAGA.............................................................................................. 24 1 1 5.00 5 5 0 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGG................................................................................................. 21 0 1 5.00 5 0 3 0 2 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCCCAG.................................................. 22 1 1 5.00 5 3 0 2 0 0 0 0 0 0
..................................................................................................TCACATCACTTCCCTCACAG.................................................. 20 0 1 5.00 5 0 4 0 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAGT................................................. 23 0 1 4.00 4 1 1 0 1 0 1 0 0 0
................................................................................................TCTCACATCACTTCCCTCACCG.................................................. 22 1 1 4.00 4 1 0 2 1 0 0 0 0 0
................................................................................................TCTCACATGACTTCCCTCACA................................................... 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGCG............................................................................................... 23 1 1 4.00 4 0 0 3 0 0 0 1 0 0
.................................................................................................CTCACATCACTTCCCTCACAGA................................................. 22 1 1 4.00 4 0 4 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGAC............................................................................................. 25 0 1 3.00 3 2 0 0 0 0 1 0 0 0
................................................................................................TCTCACATTACTTCCCTCACAG.................................................. 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCA..................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0
................................................................................................TCCCACATCACTTCCCTCACAG.................................................. 22 1 1 3.00 3 0 1 0 0 2 0 0 0 0
................................................................................................GCTCACATCACTTCCCTCACAG.................................................. 22 1 1 3.00 3 1 1 0 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAAA.............................................................................................. 24 1 1 3.00 3 1 1 0 1 0 0 0 0 0
...................................................................................................CACATCACTTCCCTCACAG.................................................. 19 0 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................ATCACATCACTTCCCTCACAGT................................................. 22 1 1 2.00 2 0 1 0 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAGA................................................. 23 1 1 2.00 2 0 1 1 0 0 0 0 0 0
..................................................GTCGGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGTG............................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................TGTTACATCACTTCCCTCACAG.................................................. 22 2 1 2.00 2 0 0 0 0 2 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGG................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................TCACATCACTTCCCTCACA................................................... 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0
....................................................................................................ACATCACTTCCCTCACAG.................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGCGA.............................................................................................. 24 1 1 2.00 2 0 0 1 1 0 0 0 0 0
...................................................................................................CACATCACTTCCCTCACAGT................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTC................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCTGAG............................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCCCACAG.................................................. 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0
...................................................TTGGGGGACATTGATCTCGGAGA.............................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAC............................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0 0 0 0
.................................................................................................CTCACATCACTTCCCCCACAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGGCATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................GGGGACATTGATCTCGGAGA.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTAACTGT................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCTCACATCACTCCCCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGGGGTCATTGATCTCGGAGG.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TCTCACATGACTTCCCTCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTGAGGGACATCGATCTCGGAG............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TTGGGGGACATTGATCTCGGAGG.............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACC................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................CACATCACTTCCCTCACA................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................CGTTGGGGGACATTGATCTCGGAG............................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGGG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCG.................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TATCGCATCACTTCCCTCACAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGCCATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGTGACATTGATATCGGT................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................TTTGGGGGACATTGATCTCGGAC............................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................TCTCACATCAGTTCCCTCACAC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCCCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................GTTGGGGACATTGATCTCGGAGA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGAAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCACTCACAGT................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAT............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................CTGACATCACTGCCCTCACAGT................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACGTTGATCTCGGAGC.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCCCAC............................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCTCACATCACTACCCTCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACCGG................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................CCTCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTAGGGGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................ACTCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................CTCTCACATCACTTCCCTCACAG.................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................CACATCACCTCCCTCACAGT................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTGGGGGGACGTTGATCTCGT................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................CCTCACATCACTTCCCTCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................ATCTCACATCACTTCCCTCACAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GGTTGGGGACATTGATCTCGGAGA.............................................................................................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................CCCACATCACTTCCCTCCCAGT................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGTGGGGGACATTGATCTCGGA................................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................TCCCACATCACTTCCCTCAC.................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCT.................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACAGG................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TCTCACATAACTTCCCTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................AATTCTCACATCACTTCCCTCACAG.................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................TCTTACGTCACTTCCCTCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................GTTGGGTGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGAGGACATTGATCTCGCAGA.............................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGT.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TGTCACATCACTTCCCTCACAC.................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................TCTCACATGACTGCCCTCACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................TTTCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GATGGGGGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCGCGGTGC.............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................GTCTCACAGCACTTCCCTCACAG.................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTGGTGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTAGGGGACATTGATCCCGGAGA.............................................................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACCGT................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTTGGGGTACATTGCTCTCGG................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGTGGGGGACATTGATCTC................................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCAGA................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................CTCACATCCCTTCCCTCACAGT................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................CTCGCATCACTTCCCTTGCAGT................................................. 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................TCGCAGGTCACTTCCCTCACAG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TGTCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................CTCACGTCACTTCCCTCACAGT................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTGGGGGACATTGCTCTCGG................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCCCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTCTGGGGATATTGATCTCGGAG............................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGAAAG........................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GGTGGGGGACATTGATCT.................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTGGGGAACATTGATCTCGGA................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................TCTCACCTCTCTTCCCTCACAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCTCACATCACTTACCTCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACGG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TTGGGGGACATTGATCTCGGA................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACATT................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................GTCTCACATCACTTCCCTCACA................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTGGGGGATATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................TCTTACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGGGAACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TATCACATCACTTCCCTCTCAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGTTCTCGGAGA.............................................................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTCGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTTGGGGGGCATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................GGGACATTGATCTCGGAG............................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTCGGGGGACCTTGATCTCGGATA.............................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................CCTAACATCTCTTCCCTCACAG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATGGATCACGGAG............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGTGGGGGACATTGATCTCGGGGT.............................................................................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................GCTCACATCACTTCCCTCACAGA................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................TCTAACATCAACTCCCTCACAG.................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACAAT................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................GTTGGGGGACATTAATCTCTGATA.............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTGGGTG............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................AGTCTCACATCACTTCCCTCACAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTGGGGGAAATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGACA.............................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GGTGGGGGACATTGATCCCAGAG............................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATGTCGGCT............................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGCCATTGGTCTCGGCG............................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0
..................................................GTTGGGGGTCATTGATCTCGGTT............................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................................GTTGGCGGTTTAACTGATCCT........................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGGGGGGATTGATCTCGGAGA.............................................................................................. 24 3 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................................................................TCACATCACTCCCCCCACAC.................................................. 20 3 14 0.07 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTCGACGAGGCTGTTCGCCGGAGGGTCCTGTTGGTCACCGACCTGTTCTCCAACCCCCTGTAACTAGAGCCTCTGCCGCCAAATTGACTAGGTAAGAGAGTGTAGTGAAGGGAGTGTCACGCGCTACAAACATGGTCTGCGGGTCGTTGTAAGTCGCCGGGCTGACGA

**************************************************..(((((((...((((...(((((.((((((...))))..))..)))))...))))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043

female body
..........................................................................................................GAAGGGAGTAGCACGGGCTA.......................................... 20 3 5 0.20 1 1
...........................................................................................................AAGGGAGTAGCACGGGCTA.......................................... 19 3 10 0.10 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2L:3769256-3769423 + dya_170 confident CAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCT
droEre2 scaffold_4929:3813995-3814162 + der_51 confident CAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCAATC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCT
droSec2 scaffold_5:1870650-1870817 + dse_75 confident CAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCT
droSim2 2l:3620502-3620669 + dsi_282 confident CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCT
dm3 chr2L:3767571-3767738 + dme-mir-1004 Known_mirbase CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCT
droEug1 scf7180000409554:2307456-2307628 - CAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGAT------CGCTGATC-----------------------CGA-TTT----ACTGATCTATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCT
droBia1 scf7180000302261:2154075-2154246 + CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGACTGA---------TC-C--------------------ATT-CCTT----ACTGATCCACTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCT
droTak1 scf7180000415709:76383-76555 - CAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGACTGA---------TC-C---------------------CGATCTT---TACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCT
droEle1 scf7180000490728:519610-519783 + CAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGT--TTC----------------------------------------------------------ATTGATCTTGGAGACCTTTTCG-----------------------------ACTATCCT----AGTGATCCATTC---------TCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCT
droRho1 scf7180000777886:5814-5981 - CAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTTGGAGAC------G-----------------------------GCTGGCTT----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCT
droFic1 scf7180000453924:1748568-1748740 + CAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGAATCG---------CT-C--------------------ATTCGCTC----ACTGATCCATTC---------TCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCT
droKik1 scf7180000302401:685550-685721 + CAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAG--GAC----------------------------------------------------------ACTGATCTTAGAGAAAGG---------CAACA-------------------GCAAATTA----TATG--TAATTC---------TCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCT
droAna3 scaffold_12916:5837580-5837774 + dan_549 CAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGAT--AACACGTTCTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCG----ATTCGA-ACGATCTCTCATAT------AAC--------------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCT
droBip1 scf7180000396568:1004340-1004498 - CAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGAT--CGA------------------------------AT----------CTCTCGTATAATTCAA-ACGATCTCTCATAT------AAC--------------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCT
dp5 4_group3:4962003-4962181 - dps-mir-2559 Known_mirbase AATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAAAAA------AAAAA--------CC------------ATTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCT
droPer2 scaffold_1:6454647-6454823 - dpe_108 confident AATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAAAAA---------TA-A------CC------------ATTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCT
droWil2 scf2_1100000004521:9298728-9298904 - AATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGG--TAC----------------------------------------------------------AACAACAACAAAAAT------------------------------------ACGAATAT----AATGGTAAACTCTCTCTCTCATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCT
droVir3 scaffold_12963:14941225-14941399 - AATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGG--CAC----------------------------------------------------------ATTGATCTTCAAGAAACT---------CA-CA-------------------GCCAGCTC----ATTTACTCACTCTCTC-----TCTCTT---CTCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCT
droMoj3 scaffold_6500:17898416-17898581 - AATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-AA-------------------------------------------------------------------TTGATCACTCCTAT------CTCTGTCT-----------------------CTCTTTCTCTTTC----TGACTC---------TCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCT
droGri2 scaffold_15126:4437332-4437532 + AACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCAC----------------------------------------------------------ATTGATCTTGAAGAAACT---------TG-CAGAAAACTCTCTAATACTCT-CACTCCATTTCTC----TAACTCTCCCTCTC-TCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG..................................................221781.007813523002736263730000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................241402.004023313261181580000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA...................................................211109.0010938485011610000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................231107.00107264302438101010
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT.................................................22136.0036292281210000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGG................................................................................................................................................24135.0035350000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGA..................................................................................................................................................22129.002984013850000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC....................................................20122.002288003300000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG..................................................21119.0019118000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------.........................................................................................................................................25116.0016140011000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGC................................................................................................................................................24111.001190100100000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACA...................................................2018.00817000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC..................................................2218.00871000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------...........................................................................................................2617.00760000100000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT.................................................2116.00602002200000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGG...................................................................................................................................................2115.00503002000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAG..................................................2015.00504001000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT.................................................2314.00411011000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA.................................................2214.00404000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------.........................................................................................................................................2513.00320010000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCA.....................................................1913.00330000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACAG..................................................1913.00303000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA.................................................2312.00201000100000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGG..................................................................................................................................................2212.00220000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACA...................................................1912.00201001000000
.................................................................................................................................................................................................................ACATCACTT--CCCTCACAG..................................................1812.00202000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT.................................................2012.00202000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTC.....................................................................................................................................................1912.00220000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2312.00202000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAC.................................................................................................................................................2312.00210100000000
.......................................................GGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2011.00110000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGG................................................................................................................................................2311.00110000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC...................................................2111.00110000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACA...................................................1811.00101000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCG....................................................................................................................................................2011.00100000100000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAT.................................................................................................................................................2311.00100000100000
...................................................................................................................................................................................................C---------TCTCACATCACTT--CCCTCACAG..................................................2311.00101000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCT......................................................................................................................................................1811.00100001000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG.................................................2211.00110000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGT................................................................................................................................................2411.00110000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGA..................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA..................................................2211.00110000000000
........................................................GG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................1811.00110000000000
droEre2
CAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCAATC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG..................................................221791.0079123146663584050
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................241297.00297531314412210
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................231205.0020560172531270
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA...................................................211124.001244141313620
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT.................................................221101.001013510111710
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGG...................................................................................................................................................21133.0033002013180
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGA..................................................................................................................................................22126.002610106180
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG..................................................21120.002014100140
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC....................................................2019.0092000070
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT.................................................2117.0071010140
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA.................................................2217.0072000050
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAG..................................................2017.0073011020
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT.................................................2316.0060000060
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------...........................................................................................................2615.0050000050
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAA.................................................................................................................................................2315.0050010130
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCA.....................................................1913.0030000030
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGC................................................................................................................................................2413.0030010020
................................................................................................................................................................................................................CACATCACTT--CCCTCACAG..................................................1913.0031000020
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAT.................................................................................................................................................2313.0030000030
...................................................................................................................................................................................................C---------TCTCACATCACTT--CCCTCACAG..................................................2312.0020100010
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------.........................................................................................................................................2512.0020000020
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTC.....................................................................................................................................................1912.0020000020
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------.........................................................................................................................................2512.0020000110
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGT................................................................................................................................................2412.0020010010
.................................................................................................................................................................................................................ACATCACTT--CCCTCACAG..................................................1812.0021000010
................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT.................................................2012.0020000020
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCG....................................................................................................................................................2012.0020000200
.................................................................................................................................................................................................ATC---------TCTCACATCACTT--CCCTCACAG..................................................2511.0011000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAT------.........................................................................................................................................2511.0010000010
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGC.................................................2311.0010000010
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGT..................................................................................................................................................2211.0010000010
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC..................................................2211.0010100000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................2211.0010000010
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACA...................................................2011.0011000000
.....................................................TGGGG--GAC----------------------------------------------------------ATTGATCTCGG...................................................................................................................................................1911.0011000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGT...................................................................................................................................................2111.0011000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2311.0011000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCAC....................................................1811.0011000000
...............................................................................................................................................................................GTTTA----ACTGATCCAATC---------TCTC......................................................................2111.0010000010
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG...................................................2111.0011000000
.....................................................................................................................................................................................................................................TGCGCGGTGCTTGTACCA................................1811.0011000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCAC....................................................1911.0010000010
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGAGA.................................................................................................................................................2311.0010000010
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGG..................................................................................................................................................2211.0010000010
.............................................................................................................................................................................CGGTTTA----ACTGATCCAATC---------T.........................................................................2011.0010000010
...............................................................................................................................................................................................................................................................GCAACATTCTGCGGCCGGA.....1911.0010000100
droSec2
CAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAG.................................................................................................................................................231124.001244103674
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG..................................................221119.001193521666
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGA................................................................................................................................................24155.0055212527
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA...................................................21127.002780118
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT.................................................22123.0023001211
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT.................................................21119.001910216
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGA..................................................................................................................................................2218.0081025
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT.................................................2314.0040004
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAC------G-----------------------------...........................................................................................................2614.0040031
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTG...................................................................................................................................................2114.0040004
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG..................................................2113.0033000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC....................................................2013.0031002
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCT....................................................................................................................................................2012.0020002
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAA------.........................................................................................................................................2512.0020002
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA.................................................2212.0021001
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA.................................................2112.0021100
.........................................................G--GAC----------------------------------------------------------ATTGATCTCTGAGAC------G-----------------------------GC.........................................................................................................2211.0010100
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGA................................................................................................................................................2311.0010100
................................................................................................................................................................................................................CACATCACTT--CCCTCACAG..................................................1911.0010001
......................................................................................................................................AC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------T.........................................................................2411.0010001
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAG.................................................................................................................................................2211.0011000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCA.....................................................1911.0011000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAT------T-----------------------------...........................................................................................................2611.0010001
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC.................................................2211.0010001
.................................................................................................................................................................................................................ACATCACTT--CCCTCACAGT.................................................1911.0010001
.......................................................................................................................................C------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCT.......................................................................2511.0011000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAG..................................................2011.0011000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACA...................................................2011.0010001
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGC................................................................................................................................................2411.0010001
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCTGAGAC------.........................................................................................................................................2511.0010001
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTC.....................................................................................................................................................1911.0010001
droSim2
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG..................................................2211695.0016959942093480473002202601000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................241737.0073744455213002003101603000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA...................................................211180.0018097210156200200100000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................231151.00151107184101010000306100
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGA..................................................................................................................................................221134.001349222812300000005001
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGG................................................................................................................................................24191.00914693600000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC....................................................20168.00689000154400000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCA.....................................................19140.0040500082700000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTC......................................................18140.0040000073300000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG..................................................21129.00291000021700000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT.................................................22128.0028610051300000300000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------.........................................................................................................................................25125.0025212100000000100000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC..................................................22120.0020190100000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA.................................................22116.0016141100000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGG..................................................................................................................................................22111.0011101000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------...........................................................................................................26110.001030401200000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCT......................................................................................................................................................18110.001000003700000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAA.................................................................................................................................................2319.00962000000000001000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTC.....................................................................................................................................................1919.00940000500000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGC................................................................................................................................................2419.00951300000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------.........................................................................................................................................2518.00843000100000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCAC....................................................1918.00800002600000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGG...................................................................................................................................................2118.00830010300010000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACA...................................................2017.00700010600000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAC.................................................................................................................................................2316.00651000000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCA.....................................................1816.00600000600000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT.................................................2316.00620002200000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT.................................................2115.00510001200000000001
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCG....................................................................................................................................................2015.00500001400000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC.................................................2214.00440000000000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAG..................................................2014.00400002200000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA.................................................2313.00330000000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG.................................................2213.00330000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAT------.........................................................................................................................................2512.00220000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGT................................................................................................................................................2412.00220000000000000000
.................................................................................................................................................................................................................ACATCACTT--CCCTCACAG..................................................1811.00100000100000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCAC....................................................1811.00100000100000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAAT................................................................................................................................................2411.00110000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGC..................................................................................................................................................2211.00110000000000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................2211.00101000000000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2311.00110000000000000000
.............................................................................................................................................................................CGGTTTA----ACTGATCCATTC---------TCTC......................................................................2311.00100000100000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACAG..................................................1911.00100000100000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------A-----------------------------...........................................................................................................2611.00110000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA................................................2411.00110000000000000000
........................................................GG--GAC----------------------------------------------------------ATTGATCTCGGAGG................................................................................................................................................1911.00110000000000000000
.......................................................................................................................................C------G-----------------------------GCGGTTTA----ACTGATCCAT.....................................................................................2011.00100000100000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACA...................................................1911.00100000100000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCCAG...................................................2130.33110000000000000000
dm3
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------GCGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG..................................................2214429.004429000032200022530000400000123000010653200000000002000101000000031000000000000000000001098001120005620182103936017674249358161500102631421302321241119011524013691589800000000000000000000000000000000000090200012800114341671740108700000388100900005070000000000000000001010138301700010000114013200308124014000012100000000000720002000000000013924235902100100003001000000000000200009230333000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT.................................................2211042.001042000011000000002000000003000000000000000000000000000000000000000000000000000000002001000001021105247200531172000000021003013002013309448000000000000000000001000000000000000192901200450110110460000009150100000702000000000000000000000000000010000000011021920002330400000110000000000010000000000100100483853950200010000302300000300000030003229841986201000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA...................................................211916.0091600003000000100000100000150000102190000000000000000000000000010000000000000000000001800000000442404293610521362001000110000032205035803932736000000000000000000000000000000000000847021004510021122045200000145204000020100000000000000000000001000002000000000101500000240000000200000000000010100000000000007561300100000002000000000000000000001500000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAG.................................................................................................................................................231822.008220000000000000000000000000001300000000000000000000000000000000000000000000000000010000000001301152000011200000000100000020101200000711000000000000000000001000000000000000130021221022126382120000018150140000401800000200000000000200000000000000000004404500002340600001230000000000012000000000000000202016240458548000000400990000020001000700016030335200000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................241550.0055000000000000000000000000000005000000000000000000000000000001000000000000000000000000000000000005010000900000000000000000003000005800000000000000000000100000000000000091024001419016690000000034609000000600000000000000000100000000000100021004402000202010200000900000100101211001000000000003816101972515000100280390000021000003600023331114000110
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGA..................................................................................................................................................221175.0017500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000002000001100000000000000000000000000000000000030010002060300000000630100000501500000000000000000000000010000000000001000000007103000007000000000002000000000000000136271413501000020090000010000000000001510102100000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA.................................................221136.00136000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000111131000306000100000000305001010201160000000000000000000000000000000000000101607003102050212000005000000000100000000000000000000000000000000000000000100000200000001000000000000000000000000000031320000000000000000000000000000000800020000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGG...................................................................................................................................................211105.001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000010100000000000000000001000000010000000000000000004000205030200000004060000201300000000000000000000000000000000000002000200002001001011000000000000000000000000000042250253030000201000000000001050000712002000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAT------C-----------------------------...........................................................................................................26179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC....................................................20177.00770000000000000000000000020000000000000000000000000000000000000000000000000000000030000000000201512000018000000000000001010000106022000000000000000000000000000000000000120100310201020000008000000000000000000000000000000000000000000000001000100001201000001000000000000000000000000000001000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT.................................................21167.006700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000120000000000000010000000030110000000000000000000000000000000000001102001000000300000050020000000000000000000000000000000000000000000000000000003000000000000000000002000000000000000232300000000001021000001000000000001000000200000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG..................................................21147.0047000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000220030100009000000000000001000000001012000000000000000000000000000000000000340300000200020000001000000000100000000000000000000000000100000000000000000000201000000000000000000000000000000000000120000000000000000000000000000000100000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT.................................................23126.0026000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000200000110000001000000503000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000011020000000000000000000100000000000200020000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA.................................................23124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000001000000000120000000000000000000000000000000000000120100010000020000007000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCA.....................................................19121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000111000000000000000001000000131000000000000000000000000000000000000020000200001010000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA..................................................22121.0021000011000000000000000001000000000000000000000000000000000000000000000000000000001000000000050100000004000100000000102000000000000000000000000000000000000000000000000010000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAT..................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000007113000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC.................................................22118.0018000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000002000000101000000000000000000000000000000000000000020100000000060000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC...................................................21118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000003023000000000000000000000000000000000000110100000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAA.................................................................................................................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000100100000100000000000101000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000040000000201000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------...........................................................................................................26116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100100310000000000005100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000100000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------T-----------------------------C..........................................................................................................27115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC..................................................22113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000006000000000000000000000002000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACA...................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000010000000010000000000000000000000000000000000000000000000110100001000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTC......................................................18113.0013000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACAG..................................................19113.0013000000000000000000000001000000000000000000000000000000000000000000000000000000010000000010000010000000000000000000000000000000010000000000000000000000000000000000000100100000101000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA.................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000030000000001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100001000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGC................................................................................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000001000000000000000000000000000000000210000000100000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------.........................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000021000000001000000000000000000300001000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCG....................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000002100000000000
...............................................................................................................................................................................................................TCACATCACTT--CCCTCACAG..................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000000000000003000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................C------G-----------------------------GCGGTTTA----ACTGATCCATTC---------..........................................................................2218.008000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT.................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000110000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACCT..................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------.........................................................................................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000012000000000000000000001000000000001000000000000000001000000000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAC------G-----------------------------ATC........................................................................................................2917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG...................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGG................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ACATCACTT--CCCTCACAGT.................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000100000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAC.................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000010000000000000000
..............................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGTG................................................2313.003000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................T-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAA------A-----------------------------...........................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCTCGGAGAT------.........................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000100000000000
..................................................GT-TGGGG--GAC----------------------------------------------------------ATTGATCT......................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
......................................................GGGG--GAC----------------------------------------------------------ATTGATCTCGGAGA................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGAT------CGCTGATC-----------------------CGA-TTT----ACTGATCTATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGACTGA---------TC-C--------------------ATT-CCTT----ACTGATCCACTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCTSizeHit CountTotal NormTotal
No Reads
droTak1
CAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGACTGA---------TC-C---------------------CGATCTT---TACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
CAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGT--TTC----------------------------------------------------------ATTGATCTTGGAGACCTTTTCG-----------------------------ACTATCCT----AGTGATCCATTC---------TCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTSizeHit CountTotal NormTotal
No Reads
droRho1
CAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGG--GAC----------------------------------------------------------ATTGATCTTGGAGAC------G-----------------------------GCTGGCTT----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
CAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGG--GAC----------------------------------------------------------ACTGATCTCGGAGAATCG---------CT-C--------------------ATTCGCTC----ACTGATCCATTC---------TCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
CAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAG--GAC----------------------------------------------------------ACTGATCTTAGAGAAAGG---------CAACA-------------------GCAAATTA----TATG--TAATTC---------TCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCTSizeHit CountTotal NormTotal
No Reads
droAna3
CAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGAT--AACACGTTCTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCG----ATTCGA-ACGATCTCTCATAT------AAC--------------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................................................GCTGTCG----ATTCGA-ACGATC.......................................................................................................................................................1916.006000114
................................................................CGTTCTAACCAACTGATATGAAACTACG...........................................................................................................................................................................................2813.003300000
...............................................................................................GTTTTTATCGCTGTCG----ATTCGA-.............................................................................................................................................................2213.003000003
.....................................................................................................ATCGCTGTCG----ATTCGA-ACGATC.......................................................................................................................................................2213.003000003
................................................................CGTTCTAACCAACTGATATGAAACT..............................................................................................................................................................................................2512.002000002
.....................................................................................AACTACGAATGTTTTTATCGCT............................................................................................................................................................................2212.002200000
........................................................................................TACGAATGTTTTTATCGCTGT..........................................................................................................................................................................2111.001100000
.............................................................................TGATATGAAACTACGAATGT......................................................................................................................................................................................2011.001000010
...........................................................................................GAATGTTTTTATCGCTGTCG----ATTC................................................................................................................................................................2411.001100000
.....................................................................................AACTACGAATGTTTTTATCGC.............................................................................................................................................................................2111.001000001
........................................................................................................GCTGTCG----ATTCGA-ACGATCT......................................................................................................................................................2011.001000010
...................................................................................................TTATCGCTGTCG----ATTCGA-ACGATC.......................................................................................................................................................2411.001000010
......................................................................AACCAACTGATATGAAACTACGAATGT......................................................................................................................................................................................2711.001010000
................................................................CGTTCTAACCAACTGATAT....................................................................................................................................................................................................1911.001100000
..........................................................................AACTGATATGAAACTACGAATGT......................................................................................................................................................................................2311.001100000
..............................................................................................TGTTTTTATCGCTGTCG----ATTCGA-ACG..........................................................................................................................................................2611.001100000
.................................................................GTTCTAACCAACTGATATGAAACTACG...........................................................................................................................................................................................2711.001100000
...............................................................................................GTTTTTATCGCTGTCG----ATTC................................................................................................................................................................2011.001100000
...............................................................................................GTTTTTATCGCTGTCG----ATTCG...............................................................................................................................................................2111.001100000
.................................................................................ATGAAACTACGAATGTTTTTATCGC.............................................................................................................................................................................2511.001100000
..........................................................................AACTGATATGAAACTACGAAT........................................................................................................................................................................................2111.001000001
...................................................................TCTAACCAACTGATATGAAACT..............................................................................................................................................................................................2211.001100000
.......................................................GAT--AACACGTTCTAACCAACTGATAT....................................................................................................................................................................................................2611.001100000
.........................................................................................ACGAATGTTTTTATCGCTGTCG----AT..................................................................................................................................................................2411.001100000
...............................................................................................GTTTTTATCGCTGTCG----ATTCGA-ACGATC.......................................................................................................................................................2811.001100000
...................................................................................GAAACTACGAATGTTTTTATCGC.............................................................................................................................................................................2311.001100000
..............................................................................GATATGAAACTACGAATGTTTT...................................................................................................................................................................................2211.001000001
....................................................................................................TATCGCTGTCG----ATTCGA-ACGATC.......................................................................................................................................................2311.001100000
droBip1
CAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGAT--CGA------------------------------AT----------CTCTCGTATAATTCAA-ACGATCTCTCATAT------AAC--------------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTSizeHit CountTotal NormTotal
No Reads
dp5
AATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAAAAA------AAAAA--------CC------------ATTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG..................................................221185.0018508422622141000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT.................................................231104.001040163432364000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACA...................................................21156.0056038016020000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC.................................................23121.002100615000000
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGA................................................................................................................................................25118.001802111020011
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA.................................................2317.0070303010000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAG..................................................2116.0060600000000
...................................................................................................................................................................................................................ATCATTTTCCCCTCACAG..................................................1813.0030003000000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT.................................................2213.0030101010000
.................................................................................................................................................................................................................ACATCATTTTCCCCTCACAGT.................................................2113.0030001020000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACA...................................................2013.0030300000000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAC..................................................2213.0030003000000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGTC................................................2412.0020011000000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAA..................................................2212.0020001010000
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGA..................................................................................................................................................2312.0020010000001
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCAC....................................................2012.0020002000000
..............................................................................................................................................................................................................CTCACATCATTTTCCCCTCACAGT.................................................2411.0010001000000
.................................................................................................................................................................................................................ACATCATTTTCCCCTCACAG..................................................2011.0010010000000
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAA...............................................................................................................................................2611.0010010000000
................................................................................................................................................................................................................CACATCATTTTCCCCTCAC....................................................1911.0010100000000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACACCC................................................2411.0010001000000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGTT................................................2311.0010001000000
.............................................................AT----------------------------------------------------------ACTGATTTTAGAGAAAAA------AAA...................................................................................................................................2311.0010001000000
..................................................................................................................................................................................................................CATCATTTTCCCCTCACAG..................................................1911.0010001000000
.................................................................................................................................................................................................................ACATCATTTTCCCCTCACA...................................................1911.0010001000000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGA.................................................2211.0010100000000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAT..................................................2211.0010100000000
.......................................................................................................................................AAAA------AAAAA--------CC------------ATTAACGT----GAGGCTTC.......................................................................................2711.0010001000000
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTT.....................................................................................................................................................2011.0010000000001
droPer2
AATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAAAAA---------TA-A------CC------------ATTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT.................................................23150.005015018251
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG..................................................22140.00400203890
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACA...................................................21114.0014040460
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGA................................................................................................................................................25111.0011200126
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAG..................................................2114.004030100
................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT.................................................2214.004010300
..................................................GTGTGTGG--GAT----------------------------------------------------------ACTGATTTTAGAGAA...............................................................................................................................................2611.001000010
...............................................................................................................................................................................................................................................CTGTACCAGGCTCCGACCAGCATT................2411.001010000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA.................................................2311.001010000
...............................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC.................................................2311.001000010
..................................................................................................................................................................................................................CATCATTTTCCCCTCACAG..................................................1911.001010000
................................................................................................................................................................................................................CACATCATTTTCCCCTCACA...................................................2011.001000010
droWil2
AATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGG--TAC----------------------------------------------------------AACAACAACAAAAAT------------------------------------ACGAATAT----AATGGTAAACTCTCTCTCTCATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................................................................................................GTGCGCGTTCACTTTATCAGAGTCCAT........................2711.00100010
droVir3
AATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGG--CAC----------------------------------------------------------ATTGATCTTCAAGAAACT---------CA-CA-------------------GCCAGCTC----ATTTACTCACTCTCTC-----TCTCTT---CTCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................................................................................................................................TACCAGAGCCCAGGCAACAT.................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................CAGTGGCTGGACAAAAGGC-A.................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000001000000000000000000
droMoj3
AATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-AA-------------------------------------------------------------------TTGATCACTCCTAT------CTCTGTCT-----------------------CTCTTTCTCTTTC----TGACTC---------TCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
AACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCAC----------------------------------------------------------ATTGATCTTGAAGAAACT---------TG-CAGAAAACTCTCTAATACTCT-CACTCCATTTCTC----TAACTCTCCCTCTC-TCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:25 PM