ID:

dya_16

 Coordinate:

2L:10160079-10160142 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.7 -34.4 -34.3

Flybase annnotation

utr3 [utr3_minus_1364]

No Repeatable elements found

Sense Strand Reads

AGTAAGTGAAATAGTTGAGTTCAAGGAAAAGTGTTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAATAAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACATTAATTAGTTATTTATTGAAGAGCATTAT

***********************************((((((.((.(((((.((((((((...((((((((((..(((((.......))))))))))))))).)))))))).))))).))))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V046

embryo

 M056

embryo

 V058

head

 M043

female body

 V052

head

 M026

head
..................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 0 1 20896.00 20896 15169 5637 40 34 14 2
...........................................................................................ACCTTTTGATTTACTACTTTAG................................................... 22 0 1 822.00 822 25 796 0 1 0 0
..................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................... 23 0 1 416.00 416 220 192 2 1 1 0
..................................................TGAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 283.00 283 8 275 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGT............................................................................................ 22 0 1 173.00 173 35 138 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................... 25 0 1 116.00 116 19 96 0 1 0 0
...........................................................................................ACCTTTTGATTTACTACTTTAGT.................................................. 23 1 1 102.00 102 14 88 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGTG.......................................................................................... 24 1 1 99.00 99 99 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTG.......................................................................................... 24 1 1 98.00 98 85 13 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTTG.......................................................................................... 24 1 1 97.00 97 96 0 1 0 0 0
..................................................TAAGTAGTATACATTAAAGGGTTG.......................................................................................... 24 1 1 76.00 76 49 27 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................... 24 1 1 75.00 75 65 8 1 0 1 0
..................................................TAAGTAGTATCCATTAACGGGTTG.......................................................................................... 24 1 1 62.00 62 62 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 47.00 47 27 20 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 45.00 45 0 45 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGG.............................................................................................. 20 0 1 44.00 44 3 41 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................... 25 1 1 44.00 44 4 40 0 0 0 0
..................................................TAAGTAGTATCTATTAAAGGGTTG.......................................................................................... 24 1 1 43.00 43 39 4 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGC............................................................................................ 22 1 1 40.00 40 0 40 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGGTTG.......................................................................................... 24 1 1 39.00 39 37 0 0 2 0 0
...........................................................................................ACATTTTGATTTACTACTTTAG................................................... 22 1 1 39.00 39 0 39 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGATG.......................................................................................... 24 1 1 36.00 36 29 6 0 1 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 1 1 35.00 35 13 21 1 0 0 0
..................................................TAATTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 34.00 34 0 34 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTG.......................................................................................... 24 1 1 33.00 33 25 8 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTG.......................................................................................... 24 1 1 31.00 31 15 15 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTTG.......................................................................................... 24 1 1 30.00 30 15 15 0 0 0 0
..................................................TAAGTAGCATCCATTAAAGGGTTG.......................................................................................... 24 1 1 29.00 29 15 14 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 29.00 29 22 6 1 0 0 0
..................................................CAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 28.00 28 16 12 0 0 0 0
...........................................................................................ACCTTTTGATTTACTACTTTAGC.................................................. 23 1 1 28.00 28 0 28 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGG............................................................................................. 21 0 1 28.00 28 6 22 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGTTG.......................................................................................... 24 1 1 27.00 27 26 1 0 0 0 0
...........................................................................................AGCTTTTGATTTACTACTTTAG................................................... 22 1 1 27.00 27 0 27 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 25.00 25 4 21 0 0 0 0
..................................................TAGGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 24.00 24 20 3 1 0 0 0
..................................................TAAGTAGTATCCATTAGAGGGTTG.......................................................................................... 24 1 1 23.00 23 20 3 0 0 0 0
..................................................TAAGTAGTGTCCATTAAAGGGTTG.......................................................................................... 24 1 1 22.00 22 17 3 0 2 0 0
..................................................TAAGTAGTATCCATTACAGGGTTG.......................................................................................... 24 1 1 22.00 22 22 0 0 0 0 0
..................................................TAAGCAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 21.00 21 14 7 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 21.00 21 15 6 0 0 0 0
..................................................TAAGTAGTATCCGTTAAAGGGTTG.......................................................................................... 24 1 1 21.00 21 20 1 0 0 0 0
..................................................AAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 21.00 21 6 15 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTG.......................................................................................... 24 1 1 21.00 21 10 11 0 0 0 0
...........................................................................................ACCTTTTGATTTACTACTTTAGA.................................................. 23 1 1 20.00 20 0 20 0 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGTTG.......................................................................................... 24 1 1 20.00 20 16 4 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGGGTTG.......................................................................................... 24 1 1 20.00 20 4 16 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGGTG.......................................................................................... 24 2 1 20.00 20 20 0 0 0 0 0
...................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................... 23 0 1 20.00 20 13 4 0 3 0 0
..................................................TAAGTAGTATCCATTAAGGGGTTG.......................................................................................... 24 1 1 20.00 20 19 1 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................... 24 0 1 20.00 20 7 13 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTTG.......................................................................................... 24 1 1 18.00 18 15 2 1 0 0 0
...........................................................................................ACCTTTTGATTTACTACTTTA.................................................... 21 0 1 17.00 17 0 16 0 1 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................... 25 1 1 17.00 17 7 10 0 0 0 0
.................................................................................................................GAATCTCCAGTCAAAGTCAAC.............................. 21 0 1 17.00 17 1 16 0 0 0 0
..................................................GAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 17.00 17 3 14 0 0 0 0
..................................................TAAGTAGTATCCATTGAAGGGTTG.......................................................................................... 24 1 1 17.00 17 17 0 0 0 0 0
..................................................TAAGTGGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 16.00 16 11 5 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................... 24 1 1 16.00 16 14 2 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 25 1 1 16.00 16 12 4 0 0 0 0
..................................................TAAGTAGTATCCATCAAAGGGTTG.......................................................................................... 24 1 1 15.00 15 15 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................... 23 1 1 15.00 15 0 15 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTTG.......................................................................................... 24 1 1 15.00 15 14 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................... 24 1 1 15.00 15 9 5 1 0 0 0
..................................................TAAGTAGAATCCATTAAAGGGTTG.......................................................................................... 24 1 1 15.00 15 1 14 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTT........................................................................................... 23 1 1 14.00 14 0 14 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGTTG.......................................................................................... 24 1 1 14.00 14 8 6 0 0 0 0
...........................................................................................ACCTTTTGATTTACTACTTTAC................................................... 22 1 1 13.00 13 0 13 0 0 0 0
..................................................TCAGTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 12.00 12 12 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTCG.......................................................................................... 24 1 1 12.00 12 11 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTG........................................................................................... 23 2 1 11.00 11 0 11 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAG................................................... 22 2 1 11.00 11 0 11 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGTTG.......................................................................................... 24 1 1 11.00 11 8 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGATTG.......................................................................................... 24 1 1 11.00 11 10 1 0 0 0 0
...........................................................................................ACCGTTTGATTTACTACTTTAG................................................... 22 1 1 10.00 10 0 10 0 0 0 0
......................................................TAGTATCCATTAAAGGGTTG.......................................................................................... 20 0 1 10.00 10 0 10 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGT............................................................................................ 22 1 1 9.00 9 0 9 0 0 0 0
..................................................TAAGTAGTATCCACTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGTT.......................................................................................... 24 2 1 9.00 9 9 0 0 0 0 0
..................................................TAAGTAGTATCCTTTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 8 0 1 0 0 0
...........................................................................................TCCTTTTGATTTACTACTTTAG................................................... 22 1 1 9.00 9 0 9 0 0 0 0
..................................................TAAGTAGTTTCCATTAAAGGGTTG.......................................................................................... 24 1 1 9.00 9 7 2 0 0 0 0
..................................................TAAGTAGTAACCTTTAAAGGGTCG.......................................................................................... 24 3 1 8.00 8 8 0 0 0 0 0
...........................................................................................ACCCTTTGATTTACTACTTTAG................................................... 22 1 1 8.00 8 0 8 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGGGTTG.......................................................................................... 24 1 1 7.00 7 6 1 0 0 0 0
..................................................TAAGTAGGATACATTAAAGGGTTG.......................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0
..................................................TAAGTAGTATCCATTCACGGGTTG.......................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAAGGGTTG.......................................................................................... 24 1 1 7.00 7 6 1 0 0 0 0
..................................................TAAGTAGTATCCATTAATGGGTTG.......................................................................................... 24 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAGTAGTAACCATTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 4 2 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGGTG.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGCTG.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCGATTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 4 2 0 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGGTG.......................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTTGT......................................................................................... 25 1 1 6.00 6 0 6 0 0 0 0
..................................................TAAGTAATATCCATTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCG.......................................................................................... 24 3 1 6.00 6 0 6 0 0 0 0
..................................................TAAGTTGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 6.00 6 3 3 0 0 0 0
...........................................................................................AGCTTTTGATTTACTACTTTAGT.................................................. 23 2 1 5.00 5 0 5 0 0 0 0
...........................................................................................ACCTTTTGATTTACTACTT...................................................... 19 0 1 5.00 5 0 5 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGT........................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGTTT.......................................................................................... 24 2 1 5.00 5 4 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTGG.......................................................................................... 24 1 1 5.00 5 2 2 0 0 0 1
..................................................TAAGTAGTCTCCATTAACGGGTTG.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTAG.......................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
...........................................................................................ACCTTTTGATTCACTACTTTAG................................................... 22 1 1 4.00 4 0 4 0 0 0 0
...........................................................................................ACCTTTTGATTTCCTACTTTAG................................................... 22 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAGTAGTATCCATAAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................ACCATTTGATTTACTACTTTAG................................................... 22 1 1 4.00 4 0 4 0 0 0 0
...........................................................................................ACTTTTTGATTTACTACTTTAG................................................... 22 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAGTAGTCTCCATTCAAGGGTTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................ATCTTTTGATTTACTACTTTAG................................................... 22 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGCTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
.............................................................................................CTTTTGATTTACTACTTTAG................................................... 20 0 1 4.00 4 1 3 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGGTG.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTAGCCATTAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 1 2 1 0 0 0
..............................................................................................TTTTGATTTACTACTTTAG................................................... 19 0 1 4.00 4 0 4 0 0 0 0
..................................................TAAGTAGTATCCATGAAAGGGTTG.......................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGTTT.......................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTACAGGGTT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAGC.................................................. 23 3 1 3.00 3 0 3 0 0 0 0
...........................................................................................ACCTTGTGATTTACTACTTTAG................................................... 22 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTCTCCATTTAAGGGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCT........................................................................................... 23 1 1 3.00 3 1 2 0 0 0 0
..................................................TAAGTAGTATCCAGTAAAGGGTTG.......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
....................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................... 22 0 1 3.00 3 1 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAG............................................................................................... 19 0 1 3.00 3 0 2 1 0 0 0
..................................................TAAGTAGTATACATTAAAGGGGTT.......................................................................................... 24 3 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAAGGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.......................................................AGTATCCATTAAAGGGTTG.......................................................................................... 19 0 1 3.00 3 1 2 0 0 0 0
..................................................TAAGTAGGATCCGTTAAAGGGTTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTC.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAAGGGTC........................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGATG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGATA.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTT............................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTTG............................................................................................ 22 3 1 3.00 3 0 3 0 0 0 0
...........................................................................................ACATTTTGATTTACTACTTTAGT.................................................. 23 2 1 3.00 3 0 3 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAAGGGGTG.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAATTAGTATCCATTAAAGGGT............................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTTG......................................................................................... 25 2 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTT.......................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TGAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTCGTATCCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTACTATCCATTAAACGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCAGTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTCACGGGCTG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGATG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATCGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGTT........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................ACGTTTTGATTTACTACTTTAG................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGC............................................................................................ 22 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGGTT........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TACGTAGTATCCATTAAAGGGGTT.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAATAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 0 1 1 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGGTCG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTACAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................AGCTTTTGATTTACTACTTTA.................................................... 21 1 1 2.00 2 0 2 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGGGTTGC......................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0
..................................................TACGTAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGTTG........................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATTTATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGTTTG.......................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAACCGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGGT........................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTCTCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAAGG.............................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGGT............................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGGGTT........................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................................GAATCTCCAGTCAAAGTCAACA............................. 22 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAACGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCCTTTGATTTACTACTTTAGT.................................................. 23 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAATTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATGATCCATTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGTTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTTTTAATTTACTACTTTAG................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTTT.......................................................................................... 25 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGGATCCATTGAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCAATAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGCTCCTTTAAAGGGTTG.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTTGTATCCATTAAAGGGGTT.......................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGGTTGT......................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0
..................................................TTAGTAGTATCCCTTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATGCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCGTTTGATTTACTACTTTAGT.................................................. 23 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCCTTTTGATTTACTACTTTAGT.................................................. 23 2 1 2.00 2 0 2 0 0 0 0
..................................................TAACTAGTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTCTTGATTTACTACTTTAG................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAGGTAGTATCCATTAAAGGGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTT........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTGAAGGGGTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGCGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTGACGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAAGGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGTT........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TACGTAGTATCCATTCAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGCTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTGTTGATTTACTACTTTAG................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................ACCTTTTGATTTACTACTTTGG................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGTGTT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCCTTAAAGGGTTG.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGTTT.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGTT........................................................................................ 26 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGGTTC.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGGATCCATTAAAGGGTT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTATTATCCATTCAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGTGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTG........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGATG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGATG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGGGTT........................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTACTATCCATTAAAGGGTTG.......................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
...................................................TAGTAGTATCCATTAAAGGGTTG.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TGCTTTTGATTTACTACTTTAG................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATCCATTATAGGGTTG.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATACATTTAAGGGTTG.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
....................................................AGTAGTATCCATTAAAGG.............................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0
...........................................................................................AGCTTTTGATTTACTACTTTAGC.................................................. 23 2 2 1.50 3 0 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGCTGC......................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTACCCATTAAAGGGTTG.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................ACCGTTTGATGTACTACTTTAGT.................................................. 23 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTTT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.....................................................GAAGTATCCATTAAAGGGTTG.......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTCTACATTAAAGGGATG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATCCATTAAAGTGATG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGTATCCATTTAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GTATCTCCAGTCAAAGTCAAC.............................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATTCATTAAAGTGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATCCATTAAAGGTTG........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTATTATCCAGTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCCTTAAATGGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAACGTTC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACGGATTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................CAAGGAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGAGTTT.......................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGAATCCATTAAATTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGTTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGCTTC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATACATTAAAGTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGCATCCATTATAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGACTCCACTAAAGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................AAAGGAGTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACGTTAAAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTC........................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTTGTATCCATTAAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTGG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTAA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TCAGTAGTATCCATTAAATGGCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAACGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TCAGAAGTATCCATTAAAGGGTTC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTGT.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAGCGTTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACCTCTTGATTTACTTCTTTAG................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGAAGTATCCTTTAACGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCAGTAAAGTGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAAGGATTC.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TTAGTACTATCCATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTACAGGTATG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAAGGGCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGGTT.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTTTACATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTCGTATCCATTAAAGGTCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATACATTAAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTATCCATTAAAGGGGTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTTGTATACATTAAAGGGGTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATGAAAGGCTCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTTTCCATTAAAGGGCTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTAACGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAATGGCTG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGGCG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGTGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAAGGGATG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................TAGGTAGTATCCATTTAAGGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................CTAAGTAGTATCCATTAAAGTGTTT.......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTACCCATTAAAGGGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTGTGGT...................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
...................................................AAGTAGTATCCATTAAAGCGTTG.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGGATACATTAAAAGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAAGGGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
.................................................TGAAGTAGTATCCATTAAAGGGT............................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TTAGTAGTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTTTTCATTAAAGGGGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAAGGTTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGTGTCCATTAATGGGTTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCAATTAAAGTATTG.......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAATGGTTG.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

TCATTCACTTTATCAACTCAAGTTCCTTTTCACAAACTACCTTCGAAGGAATTCATCATAGGTAATTTCCCAACACCAGTGTTATTCTAGTTGGAAAACTAAATGATGAAATCCTTAGAGGTCAGTTTCAGTTGTAATTAATCAATAAATAACTTCTCGTAATA

************************************((((((.((.(((((.((((((((...((((((((((..(((((.......))))))))))))))).)))))))).))))).))))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 V120

male body
.............................TGACAAACTACCGTCGAAGGAAG................................................................................................................ 23 3 1 1.00 1 1 0
.......................................................................................................TGATGAAATCCTTAGAGCC.......................................... 19 2 2 0.50 1 0 1
.......................................................................................................TGATGAAAGCCTTAGAGC........................................... 18 2 7 0.14 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2L:10160029-10160192 - dya_16 confident AGTAAGTGAA---------------ATAGTTGAGTTCAAGGAAAAGTGT----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAAC---ATTAA-------TTA---GTTA---------------------------------------------TTT-------A------------TTGAAGAGCAT--------------------------TAT
droEre2 scaffold_4929:11718878-11719031 + der_23 confident AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAGTTG----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACA---ATAA-------TTA---GTTC---------------------------------------------TAT-------A------------T------------------------------------TAA
droSec2 scaffold_3:14556-14739 - dse_5 confident AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAAATTG---T----T--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAAC---ATTAA-------ATA---GTGA---------------------------------------------TAT-------A------------TGTCAGAGTATTGTCGGAATAAATATAAT--------AAT
droSim2 2l:13334259-13334442 - dsi-mir-968 Known_mirbase AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAAATTG---T----T--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAAC---ATTAA-------ATA---GTGA---------------------------------------------TAT-------A------------TGTCAGAGTATTGTCGGAATAAATATAAT--------AAT
dm3 chr2L:13747710-13747874 - dme-mir-968 Known_mirbase AGTAAGTGAA---------------ACCAATGAGTTCAAAGAAAAATTG----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACA--TAA-------GTA---GTGA---------------------------------------------TA--------A------------TGCAAGAGTAT--------------------------TGT
droEug1 scf7180000409452:319699-319871 - AGTTCTCGAA---------------GTTAACGAGATCGAGTAATGCT-------TCATAAATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAAC---ATTATTATATACAAA------------------------------------------------TTAATT--------T------------TACAAAAATCA--------------------------TAT
droBia1 scf7180000302408:2583395-2583555 + AGTCAGTGAATCGTGTCCCACATCCAAAATTAAGTGCAA-------------------ATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTC---ATTTT-------AAA---GT-------------------------------------------------------------------------AATAGAA------------------C--------AAT
droTak1 scf7180000414072:20159-20324 + AGTGAGTCAA---------------GTAATCCAGTTCGCATAATAGTTTGAGT-CCAAATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTAC---ATTTA-------TTA---GTA---------------------------------------------------------------------A--------------------ATTGGAAA--------ATT
droEle1 scf7180000491338:1357109-1357272 - AGTTAGTGAA---------------GTGATTGAGTGCAAAGAATAGTTTA----CCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGT---GTTTA-------A-AATA------------------------------------------------------------------------CAATAAAAGAT--------------------------TAT
droRho1 scf7180000780107:332456-332627 + ATTGAGTGCA---------------GTGATCGAGTCCAAGGAATAGTTACAGT-GAATAAATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCC---GTTTA-------A-AGTA--GA---------------------------------------------TT--------A------------------------------ATAACTAAAAT--------TCT
droFic1 scf7180000448796:148-314 + AGTACGTGAA---------------GAAAACAAGTCAAATTAAGAACTTTACT-CAACAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAAC---ACTAT---------AA---------------------------------------------------TA--------A------------AAGAAAAGTGT--------------------------TAT
droKik1 scf7180000302236:231966-232155 + TGTGAGTGAC---------------ATAGTGAAGTCCAAGTGCTAATCTT--------CGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGC---TTTCATA--------------------------------------------------TAGAATCACTATCTTGAATT-------------C---------CTGACCTA----AAATAAGGACATACATAT
droAna3 scaffold_12943:1815468-1815667 - dan_28 confident GGAAA----A---------------GAGGTTGAAT-------------------CCTAAATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAA---AA-------TAA---GTTTCAAGCATTTCAAGCCAAAGTTTTCATAAATATCTGTGCAA---------------ACTAAATCATGTGTTTAAGTAGG------------------C--------AAT
droBip1 scf7180000396728:1424207-1424337 + TG------------------------------------------------------------ATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAAGTTGA-------A-AATA------------------------------------------------TCT--------T------------CCAAACAATAT--------------------------TAT
dp5 4_group1:1722746-1722919 + dps-mir-968 Known_mirbase ACTCAGTAAA---------------GTGATCGAGTTTGAATAGTGATTTAGTT-CTACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGA---ACTG--------------------------------------------------TGCGATTAGAGTTATCAATA-------------G------------------------------------GCA
droPer2 scaffold_5:3483574-3483746 - dpe_27 confident AGTCAGTAAA---------------GTGATCGAGTTTGAATAGTGATTTAGTT-CCACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGA---ACTG--------------------------------------------------TGCGATTAGAGTTATCAATA-------------G------------------------------------GCA
droWil2 scf2_1100000004585:545313-545442 + dwi_11 confident A-------------------------------------------------------------------GATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA---TAT----AGAAAGTA------------------------------------------------TTG--------A---------------AAAAGTGT-----------------------TCATTT
droVir3 scaffold_12723:5044001-5044117 - dvi-mir-968 Known_mirbase ------------------------------------------------------------------------CCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAA---TCGA------TA---AGAC---------------------------------------------AA--------A------------CTAAAAAATTT--------------------------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AGTAAGTGAA---------------ATAGTTGAGTTCAAGGAAAAGTGT----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAAC---ATTAA-------TTA---GTTA---------------------------------------------TTT-------A------------TTGAAGAGCAT--------------------------TATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................24120896.0020896234563715169144000000
..........................................................................................................................ACCTTTTGATTTACTACTTTAG..........................................................................................................................................................221822.0082201796250000000
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................231416.00416011922201200000
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................221173.0017300138350000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................251116.001160196190000000
..........................................................................................................................ACCTTTTGATTTACTACTTTAGT.........................................................................................................................................................231102.001020088140000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................24175.0075008651100000
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................20144.0044004130000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................................................................................................................................25144.0044004040000000
...........................................................................TAAGTAGTATCCATTAAAGGGC.........................................................................................................................................................................................................22140.0040004000000000
..........................................................................................................................ACCTTTTGATTTACTACTTTAGC.........................................................................................................................................................23128.0028002800000000
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................21128.0028002260000000
..........................................................................................................................ACCTTTTGATTTACTACTTTAGA.........................................................................................................................................................23120.0020002000000000
............................................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................23120.0020034130000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................24120.0020001370000000
..........................................................................................................................ACCTTTTGATTTACTACTTTA...........................................................................................................................................................21117.0017011600000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................................................................................................................................25117.0017001070000000
................................................................................................................................................GAATCTCCAGTCAAAGTCAAC---..................................................................................................................................21117.0017001610000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................24116.0016002140000000
...........................................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................23115.0015001500000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................24115.001500590100000
..........................................................................................................................ACCTTTTGATTTACTACTTTAC..........................................................................................................................................................22113.0013001300000000
...............................................................................TAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................20110.0010001000000000
..........................................................................................................................ACCTTTTGATTTACTACTT.............................................................................................................................................................1915.00500500000000
............................................................................................................................CTTTTGATTTACTACTTTAG..........................................................................................................................................................2014.00400310000000
.............................................................................................................................TTTTGATTTACTACTTTAG..........................................................................................................................................................1914.00400400000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2513.00300030000000
.............................................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2213.00300210000000
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................1913.00300200100000
................................................................................AGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1913.00300210000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................2413.00300300000000
...........................................................................TAAGTAGTATCCATTAAAGTTG.........................................................................................................................................................................................................2213.00300300000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTTG......................................................................................................................................................................................................2513.00300300000000
................................................................................................................................................GAATCTCCAGTCAAAGTCAAC---A.................................................................................................................................2212.00200200000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTT.....................................................................................................................................................................................................2612.00200200000000
...........................................................................TAAGTAGTATCCATTAAAGGGTG........................................................................................................................................................................................................2312.00200110000000
.............................................................................AGTAGTATCCATTAAAGG...........................................................................................................................................................................................................1812.00200200000000
...........................................................................TAAGTAGTATCCATTAAAGGGTAA.......................................................................................................................................................................................................2411.00100010000000
...........................................................................TAAGTAGTATCCATTAAAGGGTGT.......................................................................................................................................................................................................2411.00100010000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTGGT...................................................................................................................................................................................................2811.00100100000000
droEre2
AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAGTTG----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACA---ATAA-------TTA---GTTC---------------------------------------------TAT-------A------------T------------------------------------TAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2419069.0090698974480768620180
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................241393.00393620385000
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................231210.0021015260166120
..........................................................................................................................ACCGTTTAATGTACTACTTTAA..........................................................................................................................................................22198.00981049039000
............................................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................23185.008581004000
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................22150.0050419026100
..........................................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................24123.002313019000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................25122.00229508000
.............................................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................22120.002070013000
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................24118.001821015000
..........................................................................................................................ACCGTTTAATGTACTACTTTA...........................................................................................................................................................21116.001631201000
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................21114.00141508000
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................20110.00100703000
...........................................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................2419.0090009000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................................................................................................................................2519.0090504000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................................................................................................................................2516.0061104000
...........................................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................................................................................................................................2413.0030003000
................................................................................AGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1913.0030003000
..........................................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2513.0031002000
...........................................................................TAAGTAGTATCCATTAAGA............................................................................................................................................................................................................1932.3370403000
............................................................................AAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................2312.0022000000
..........................................................................................................................ACCGTTTAATGTACTACTTT............................................................................................................................................................2012.0020200000
..........................................................................................................................ACCGTTTAATGTACTACTTTAAA.........................................................................................................................................................2312.0020101000
...........................................................................................................................CCGTTTAATGTACTACTTTAA..........................................................................................................................................................2112.0020200000
...............................................................................TAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2012.0022000000
...........................................................................TAAGTAGTATCCATTAAA.............................................................................................................................................................................................................1812.0020002000
...........................................................................TAAGTAGTATCCATTAAAGGGTTTG......................................................................................................................................................................................................2512.0021100000
...........................................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................2312.0020200000
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................1912.0021100000
............................................................................AAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................2311.0011000000
droSec2
AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAAATTG---T----T--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAAC---ATTAA-------ATA---GTGA---------------------------------------------TAT-------A------------TGTCAGAGTATTGTCGGAATAAATATAAT--------AATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................241129769.001297691346129123506
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................2312934.00293432291415
..........................................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................241683.00683106793
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................221430.00430014263
...........................................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................251409.00409104062
...........................................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................................................................................................................................251351.00351003510
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................201138.00138001380
............................................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................231125.001251101131
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................211116.00116001160
..........................................................................................................................ACCGTTTGATGTACTACTTTAG..........................................................................................................................................................221108.00108101070
...........................................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................................................................................................................................25198.009800980
.............................................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................22185.008500850
...........................................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................24173.007310711
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................24145.004510440
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................24142.004200420
...............................................................................TAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................20135.003510340
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................19131.003100310
...........................................................................TAAGTAGTATCCATTAAAGGGTTTG......................................................................................................................................................................................................25130.003000300
..........................................................................TTAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................23118.001800180
..........................................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................25118.001800180
..........................................................................................................................ACCGTTTGATGTACTACTTTA...........................................................................................................................................................21111.001110100
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTA.....................................................................................................................................................................................................26110.00100190
..............................................................................GTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2119.0091080
.............................................................................AGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................2118.0080080
...........................................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................2317.0070070
...........................................................................................................................CCGTTTGATGTACTACTTTAGG.........................................................................................................................................................2217.0070070
...........................................................................TAAGTAGTATCCATTAAA.............................................................................................................................................................................................................1817.0070070
...................................................................................................TTCTCAACATG-----CAAATCA................................................................................................................................................................................1815.0050050
.................................................................................GTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1814.0040040
...........................................................................TAAGTAGTATCCATTAAAGGGTTGG......................................................................................................................................................................................................2514.0040040
..........................................................................................................................ACCGTTTGATGTACTACTTTAGT.........................................................................................................................................................2313.0030030
...........................................................................TAAGTAGTATCCATTAAAGGGTTGAA.....................................................................................................................................................................................................2613.0030030
.............................................................................AGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................2313.0030030
..........................................................................................................................ACCGTTTGATGTACTACTTAG...........................................................................................................................................................2112.0020020
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTT.....................................................................................................................................................................................................2612.0020020
..........................................................................TTAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................2512.0020020
..........................................................................................................................ACCGTTTGATGTACTACTTTAGC.........................................................................................................................................................2312.0020020
........................................................................................................................CAACCGTTTGATGTACTACTTT............................................................................................................................................................2212.0020020
................................................................................AGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1912.0020020
.............................................................................AGTAGTATCCATTAAAGGGTTGTT.....................................................................................................................................................................................................2412.0020020
.............................................................................AGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................2012.0021010
............................................................................AAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................2212.0020020
...........................................................................TAAGTAGTATCCATTAAAGGGTTGACT....................................................................................................................................................................................................2711.0010010
...............................................................................TAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................2011.0010010
...........................................................................TAAGTAGTATCCATTAAAGGGTTGAC.....................................................................................................................................................................................................2611.0010010
.......................................AGAAAAAATTG---T----T--CATGGAAGCT...................................................................................................................................................................................................................................2311.0010010
...........................................................................TAAGTAGTATCCATTAAAGGGTTTGC.....................................................................................................................................................................................................2611.0010010
droSim2
AGTAAGTGAA---------------ATAATTGAGTTCAAAGAAAAAATTG---T----T--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAAC---ATTAA-------ATA---GTGA---------------------------------------------TAT-------A------------TGTCAGAGTATTGTCGGAATAAATATAAT--------AATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................24148314.00483142819224941610220233521222503900000
..........................................................................................................................ACCGTTTGATGTACTACTTTAG..........................................................................................................................................................2211621.0016211213092000000030700000
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................231600.0060000332050096054500000
...........................................................................................................................CCGTTTGATGTACTACTTTAGG.........................................................................................................................................................221172.001720016700000000500000
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................241161.001610051000000015500000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................251119.0011900661000011703400000
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................221113.001130046102007605100000
..........................................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................24186.0086001000000108400000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................................................................................................................................25174.007400510000221303300000
........................................................................................................................CAACCGTTTGATGTACTACTTT............................................................................................................................................................22174.0074007300000000100000
..........................................................................................................................ACCGTTTGATGTACTACTTTA...........................................................................................................................................................21157.00571046000000001000000
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................20154.00540022007003401800000
............................................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................23148.00480014900000002500000
..........................................................................................................................ACCGTTTGATGTACTACTTTAGA.........................................................................................................................................................23143.00430031000000001200000
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................19131.00310011001200030500000
...........................................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................24130.00300013000001001600000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................................................................................................................................25125.0025006000000001900000
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................21123.002300500700210800000
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................24120.0020004000000001600000
.............................................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................22120.0020001310000000600000
...........................................................................................................................CCGTTTGATGTACTACTTTAG..........................................................................................................................................................21119.0019001600000000300000
.........................................................................................................................AACCGTTTGATGTACTACTTTAG..........................................................................................................................................................23119.0019001600000000300000
..........................................................................................................................ACCGTTTGATGTACTACTTTAGC.........................................................................................................................................................23118.0018001700000000100000
...........................................................................TAAGTAGTATCCATTAAA.............................................................................................................................................................................................................18117.0017002001300100100000
........................................................................................................................CAACCGTTTGATGTACTACTTTAG..........................................................................................................................................................24111.0011001100000000000000
...........................................................................................................................CCGTTTGATGTACTACTTTAGT.........................................................................................................................................................2219.00900700000000200000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGG......................................................................................................................................................................................................2517.00700600000000100000
...........................................................................................................................CCGTTTGATGTACTACTTTAGA.........................................................................................................................................................2217.00700700000000000000
...............................................................................TAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2017.00700500000000200000
..........................................................................TTAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................2316.00600200000000400000
..........................................................................................................................ACCGTTTGATGTACTACTTTAT..........................................................................................................................................................2216.00600100000000500000
................................................................................AGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1915.00500200000000300000
...........................................................................................................................CCGTTTGATGTACTACTTTAGGT........................................................................................................................................................2315.00500300000000200000
..........................................................................................................................ACCGTTTGATGTACTACTTTAA..........................................................................................................................................................2214.00400200000200000000
...........................................................................TAAGTAGTATCCATTAAAGGGG.........................................................................................................................................................................................................2214.00400300000000100000
..........................................................................................................................ACCGTTTGATGTACTACTTT............................................................................................................................................................2014.00400300000000100000
..........................................................................................................................ACCGTTTGATGTACTACTTTAC..........................................................................................................................................................2214.00400400000000000000
.................................................................................GTATCCATTAAAGGGTTG.......................................................................................................................................................................................................1814.00400300000000100000
...........................................................................................................................CCGTTTGATGTACTACTT.............................................................................................................................................................1813.00300300000000000000
.............................................................................................................................GTTTGATGTACTACTTTAG..........................................................................................................................................................1913.00300300000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTA.....................................................................................................................................................................................................2613.00300000000000300000
...........................................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................................................................................................................................2413.00300000000000300000
...........................................................................................................................CCGTTTGATGTACTACTTTAGC.........................................................................................................................................................2213.00300300000000000000
.....................................................................................................................AATCAACCGTTTGATGTACTACT..............................................................................................................................................................2312.00200200000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGGCT.......................................................................................................................................................................................................2412.00200000000000200000
..........................................................................................................................ACCGTTTGATGTACTACTTTAGG.........................................................................................................................................................2312.00200200000000000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................2512.00200100000000100000
...........................................................................................................................CCGTTTGATGTACTACTTTAGGC........................................................................................................................................................2312.00200200000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTG........................................................................................................................................................................................................2312.00200100000000100000
dm3
AGTAAGTGAA---------------ACCAATGAGTTCAAAGAAAAATTG----T----T--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACA--TAA-------GTA---GTGA---------------------------------------------TA--------A------------TGCAAGAGTAT--------------------------TGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................TAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................241209122.0020912200000001522800000000000000061000000012120031002051100011120001000000000000000000000000055363523350002040052054210000060000247105027013010025030100000001000554644408833632416041411977320000000000029080081607010100003050002000002610000023003100100138213031505208030003200001664679564040301212656920001441105124121047153426483021401021274011011220159292471401088526443925009011714110325101013457314416123141882930021000
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................2314655.0046550000000000000000000000000010000210000000101030000000000000000000000000000000000003114000000000000000000000000005000000000000000000000000000191892392410000001010000000000010100020001002000000000000020000000000000000001010300001112600100000217102110010010531000001500001000031510723000000037000103351179359910310000102000211200000422000160121970000200
..........................................................................................................................ACCTTTTGATGTACTACTTTAA..........................................................................................................................................................2212239.002239000010122225000000000000000000000000100000000000000000000030000000000000000000000011744069476790020100010005110300000000016880054000000000000000000000000500260000000000000000000000010000000000000000000000000000000000000000000000000000000400100100001890000000000000000200000000000000000000000000000000565000000000000000000000000100000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGT......................................................................................................................................................................................................2511719.00171900000000100000000000000000000000001000000000000000000000000000000000000000000000012241000000000100000000000000003500000000000000000000000000784280100000000000000000000010000000000000000000000000000014000000000000000001000000010760040000201116100000000400000010000100000400201500000001000000010190100501000000000000000000000600000104440000000
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................2211047.001047000000001000000000000000000000000060000000001000100000000000000000000000000000000001000000000000000000000000000200000000000000000000000000012343012000010000000000000000100000000020000000000000000000000000000000000000001000001033008000069510000000015000000100000000006001640000000000000000098667000000000000000010110001300000206730001010
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................241676.0067600000000010000000000000000000000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000003329100000010000000000000000000000000000000000020000000000000000000000000100000000001002000000020175000000000910000010000000000100273000000000000000007322700100000000000000000000300000002210000000
.............................................................................AGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................221541.0054100000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000002000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533100000000020000001000000000000021000000000000000001842100100000000000000000000000000000010000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................241472.00472000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000010000000000000000000000000000000000000005439410000000000000000000000000000000200000000
..........................................................................................................................ACCTTTTGATGTACTACTTTA...........................................................................................................................................................211436.00436000000004300000000000000000000000020000000000000000000000010000000000000000000000251150143400000000200010030000020003511080000000000000000000000002030100000000000000000000000000000000000000000000000000000000000000000000000000000010020000000530000000000000000000000000000000000000000000000000131100000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGA......................................................................................................................................................................................................251372.003720000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000027003000000000000000000000000000000000000000000000000000000000000000000000001000001011000000029130000000108000000000000000011006600000011000000000926700200000001000000000000600000000020000000
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................201307.00307000000000000000000000000000000000061000000000000000000000000000000000000000000000000610000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000001000000000000000000000422510000000000000000000000100000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................211292.00292000000000100000000000000000000000057000000000000000000000000000000000000000000000020420000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000010100040000770000000002000000000000000000000100000000000000000719200000000000000000000000000000000010000000
............................................................................AAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................231266.00266000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001160000000000000000000000100000010000000000000000000000000000000000000000000000000000000000006400000000010000001000000000000031000000000000000004419400000000000000000000000000000000100000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................241198.0019800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000171200000000000000000000000000000010000000000000000014011900000000000000000000000000000000100000000
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................191162.0016200000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000370000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGC......................................................................................................................................................................................................251151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021108100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000169001000000000000010000000000000100100000000000000019800000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAA.............................................................................................................................................................................................................181127.0012700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000001000000000000000000012300000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTA.......................................................................................................................................................................................................24197.0097000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230000000002100000000000000001000000000000000000000145500000000000000000000000100010000000000000
...............................................................................TAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................20151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124000000000000000000000000000000000000000000000000042800000000000000000000000000000000000000000
..........................................................................................................................ACCTTTTGATGTACTACTTTAAA.........................................................................................................................................................23147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000003230400000000010000010000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CCTTTTGATGTACTACTTTAA..........................................................................................................................................................21130.00300000001001000000000000000000000000000000000000000000000000000000000000000000000002031300000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................AACCTTTTGATGTACTACTTTAA..........................................................................................................................................................23125.00250000000001000000000000000000000000000000000000000000000000000000000000000000000003041000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTT.....................................................................................................................................................................................................26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000010000000000000100000000000000000031200000000000000000000000100000000000000000
..............................................................................GTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000011900000000000000000000000000000000000000000
..........................................................................TTAAGTAGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
.............................................................................AGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
................................................................................AGTATCCATTAAAGGGTTG.......................................................................................................................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000031000000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTTGTA.....................................................................................................................................................................................................26115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020400100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000
.................................................................................GTATCCATTAAAGGGTTG.......................................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000
...........................................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.........................................................................................................................AACCTTTTGATGTACTACTTTA...........................................................................................................................................................22110.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................ACCTTTTGATGTACTACTTTAAC.........................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002800000000000000000000000000000000000000000
............................................................................................................................CTTTTGATGTACTACTTTAA..........................................................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000050200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droEug1
AGTTCTCGAA---------------GTTAACGAGATCGAGTAATGCT-------TCATAAATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAAC---ATTATTATATACAAA------------------------------------------------TTAATT--------T------------TACAAAAATCA--------------------------TATSizeHit CountTotal NormTotal
No Reads
droBia1
AGTCAGTGAATCGTGTCCCACATCCAAAATTAAGTGCAA-------------------ATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTC---ATTTT-------AAA---GT-------------------------------------------------------------------------AATAGAA------------------C--------AATSizeHit CountTotal NormTotal
No Reads
droTak1
AGTGAGTCAA---------------GTAATCCAGTTCGCATAATAGTTTGAGT-CCAAATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTAC---ATTTA-------TTA---GTA---------------------------------------------------------------------A--------------------ATTGGAAA--------ATTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTTAGTGAA---------------GTGATTGAGTGCAAAGAATAGTTTA----CCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGT---GTTTA-------A-AATA------------------------------------------------------------------------CAATAAAAGAT--------------------------TATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTGAGTGCA---------------GTGATCGAGTCCAAGGAATAGTTACAGT-GAATAAATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCC---GTTTA-------A-AGTA--GA---------------------------------------------TT--------A------------------------------ATAACTAAAAT--------TCTSizeHit CountTotal NormTotal
No Reads
droFic1
AGTACGTGAA---------------GAAAACAAGTCAAATTAAGAACTTTACT-CAACAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGTATACTACTTTAAGAAACTCTAGTTATACAGAAC---ACTAT---------AA---------------------------------------------------TA--------A------------AAGAAAAGTGT--------------------------TATSizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAGTGAC---------------ATAGTGAAGTCCAAGTGCTAATCTT--------CGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGC---TTTCATA--------------------------------------------------TAGAATCACTATCTTGAATT-------------C---------CTGACCTA----AAATAAGGACATACATATSizeHit CountTotal NormTotal
No Reads
droAna3
GGAAA----A---------------GAGGTTGAAT-------------------CCTAAATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAA---AA-------TAA---GTTTCAAGCATTTCAAGCCAAAGTTTTCATAAATATCTGTGCAA---------------ACTAAATCATGTGTTTAAGTAGG------------------C--------AATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................TAAGTAGTATCCATTAAAGGGTCG.......................................................................................................................................................................................................2412167.00216734691629111441
...........................................................................TAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................201243.00243023310000
...........................................................................TAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................231201.00201015942000
..........................................................................................................................ACCGTTTGATGTACTACTTTAG..........................................................................................................................................................22161.00610538000
...........................................................................TAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................22150.00500409001
...........................................................................TAAGTAGTATCCATTAAAG............................................................................................................................................................................................................19149.00490409000
...........................................................................TAAGTAGTATCCATTAAAGGGTCT.......................................................................................................................................................................................................24134.00340133000
..........................................................................TTAAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................24127.00270261000
...........................................................................TAAGTAGTATCCATTAAAGGGTCC.......................................................................................................................................................................................................24124.00240519000
...........................................................................TAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................21121.00210201000
...........................................................................................................................CCGTTTGATGTACTACTTTAGG.........................................................................................................................................................2219.009063000
...........................................................................TAAGTAGTATCCATTAAAGGGTTT.......................................................................................................................................................................................................2419.009007002
...........................................................................TAAGTAGTATCCATTAAAGGGTT........................................................................................................................................................................................................2318.008116000
...........................................................................TAAGTAGTATCCATTAAAGGGTCGC......................................................................................................................................................................................................2517.007043000
...........................................................................TAAGTAGTATCCATTAAAGGGTCGT......................................................................................................................................................................................................2516.006042000
.............................................................................AGTAGTATCCATTAAAGGGTCG.......................................................................................................................................................................................................2216.006024000
..........................................................................TTAAGTAGTATCCATTAAAGGGT.........................................................................................................................................................................................................2316.006051000
..........................................................................TTAAGTAGTATCCATTAAAGG...........................................................................................................................................................................................................2115.005050000
..........................................................................................................................ACCGTTTGATGTACTACTTTA...........................................................................................................................................................2114.004040000
...........................................................................TAAGTAGTATCCATTAAA.............................................................................................................................................................................................................1814.004013000
............................................................................AAGTAGTATCCATTAAAGGGTCG.......................................................................................................................................................................................................2314.004022000
...........................................................................TAAGTAGTATCCATTAAAGGGC.........................................................................................................................................................................................................2213.003030000
..........................................................................................................................ACCGTTTGATGTACTACC..............................................................................................................................................................1812.002020000
...........................................................................TAAGTAGTATCCATTAAAGGGTCA.......................................................................................................................................................................................................2412.002002000
...........................................................................TAAGTAGTATCCATTAAAC............................................................................................................................................................................................................1912.002020000
............................................................................AAGTAGTATCCATTAAAGGGTC........................................................................................................................................................................................................2212.002020000
............................................................................AAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................2012.002020000
...........................................................................TAAGTAGTATCCATTAAAGC...........................................................................................................................................................................................................2012.002020000
..........................................................................TTAAGTAGTATCCATTAAAGGG..........................................................................................................................................................................................................2212.002020000
..........................................................................................................................ACCGTTTGATGTACTACTTTAC..........................................................................................................................................................2211.001010000
..........................................................................................................................ACCGTTTGATGTACTACTTTAGT.........................................................................................................................................................2311.001010000
..........................................................................TTAAGTAGTATCCATTAAAGGGTCT.......................................................................................................................................................................................................2511.001010000
...........................................................................TAAGTAGTATCCATTAAAGGGTG........................................................................................................................................................................................................2311.001001000
...........................................................................TAAGTAGTATCCATTAAAGTCG.........................................................................................................................................................................................................2211.001010000
...........................................................................TAAGTAGTATCCATTAAAGGGTTC.......................................................................................................................................................................................................2411.001001000
...........................................................................................................................CCGTTTGATGTACTACTTTAGT.........................................................................................................................................................2211.001010000
............................................................................................................................CGTTTGATGTACTACTTTAG..........................................................................................................................................................2011.001010000
...............................................................................TAGTATCCATTAAAGGGTCG.......................................................................................................................................................................................................2011.001001000
droBip1
TG------------------------------------------------------------ATGGCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAAGTTGA-------A-AATA------------------------------------------------TCT--------T------------CCAAACAATAT--------------------------TATSizeHit CountTotal NormTotal
No Reads
dp5
ACTCAGTAAA---------------GTGATCGAGTTTGAATAGTGATTTAGTT-CTACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGA---ACTG--------------------------------------------------TGCGATTAGAGTTATCAATA-------------G------------------------------------GCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................TAAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................24136575.0036575111696668028717812000
..........................................................................TTAAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................2412621.0026210422020055900000
...........................................................................TAAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................2311361.0013610261054127820000
............................................................................AAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................231814.008140126136055011000
............................................................................AAGTAGTATCCATTAAGAGGTCGT......................................................................................................................................................................................................241504.00504011214027900000
...........................................................................TAAGTAGTATCCATTAAGAGGTCC.......................................................................................................................................................................................................241372.003720331005900000
...........................................................................TAAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................221316.003160924616000000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGT......................................................................................................................................................................................................251244.0024401213609600000
...........................................................................TAAGTAGTATCCATTAAGAGG..........................................................................................................................................................................................................211191.0019101212805100000
..........................................................................TTAAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................231177.001770213104400000
...........................................................................TAAGTAGTATCCATTAAGAG...........................................................................................................................................................................................................201161.00161007408700000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCC.......................................................................................................................................................................................................251150.001500113511300000
...........................................................................TAAGTAGTATCCATTAAGAGGTCT.......................................................................................................................................................................................................241102.00102002307900000
...........................................................................TAAGTAGTATCCATTAAGA............................................................................................................................................................................................................19196.0096015404100000
..........................................................................................................................ACCTTTTGATGTACTACTTTAAA.........................................................................................................................................................23183.008306680900000
............................................................................AAGTAGTATCCATTAAGAGGTCGC......................................................................................................................................................................................................24179.007905670700000
...........................................................................TAAGTAGTATCCATTAAGAGGC.........................................................................................................................................................................................................22177.007700770000000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGC......................................................................................................................................................................................................25163.006300560700000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................25155.0055061003900000
..........................................................................................................................ACCTTTTGATGTACTACTTTAA..........................................................................................................................................................22153.0053063501200000
..........................................................................TTAAGTAGTATCCATTAAGAGG..........................................................................................................................................................................................................22153.0053033801200000
...........................................................................TAAGTAGTATCCATTAAGAGGTCA.......................................................................................................................................................................................................24143.004300603700000
.............................................................................AGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................22131.003105302300000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCT.......................................................................................................................................................................................................25128.002803170800000
..........................................................................................................................ACCTTTTGATGTACTACTTTA...........................................................................................................................................................21128.002801210600000
..........................................................................TTAAGTAGTATCCATTAAGAGGC.........................................................................................................................................................................................................23127.002700270000000
...........................................................................TAAGTAGTATCCATTAAGAGGTCCC......................................................................................................................................................................................................25127.002700220500000
...............................................................................TAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................20122.002201201900000
............................................................................AAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................21120.0020001001000000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGA......................................................................................................................................................................................................25118.001800120600000
............................................................................AAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................22117.001701130300000
...........................................................................................................................CCTTTTGATGTACTACTTTAAA.........................................................................................................................................................22115.00150180600000
.........................................................................................................................GACCTTTTGATGTACTACTTTA...........................................................................................................................................................22114.00140190400000
............................................................................AAGTAGTATCCATTAAGAGGTCGTT.....................................................................................................................................................................................................25113.00130190300000
................................................................................AGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................19113.001301101100000
..........................................................................TTAAGTAGTATCCATTAAGAGGTT........................................................................................................................................................................................................24113.001300301000000
..........................................................................TTAAGTAGTATCCATTAAGA............................................................................................................................................................................................................20113.00130080500000
...........................................................................................................................CCTTTTGATGTACTACTTTAAAA........................................................................................................................................................23111.001100100100000
..............................................................................GTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................21110.001000001000000
..........................................................................TTAAGTAGTATCCATTAAGAG...........................................................................................................................................................................................................2119.0090060300000
...........................................................................TAAGTAGTATCCATTAAGAGGTT........................................................................................................................................................................................................2319.0090070200000
..........................................................................................................................ACCTTTTGATGTACTACTTTAAAA........................................................................................................................................................2418.0080080000000
.........................................................................CTTAAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................2518.0080070100000
...........................................................................TAAGTAGTATCCATTAAGAGGTA........................................................................................................................................................................................................2317.0070010600000
............................................................................AAGTAGTATCCATTAAGAGGTCC.......................................................................................................................................................................................................2317.0070060100000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGTT.....................................................................................................................................................................................................2617.0070050200000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCA.......................................................................................................................................................................................................2516.0060010500000
............................................................................AAGTAGTATCCATTAAGAGGTCGTC.....................................................................................................................................................................................................2515.0050040100000
...........................................................................TAAGTAGTATCCATTAAGAGGTAC.......................................................................................................................................................................................................2415.0050010400000
...........................................................................TAAGTAGTATCCATTAAGAC...........................................................................................................................................................................................................2015.0050050000000
.........................................................................CTTAAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................2415.0050030200000
...........................................................................TAAGTAGTATCCATTAAGAGGTCCA......................................................................................................................................................................................................2514.0040000400000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGCT.....................................................................................................................................................................................................2614.0040030100000
.............................................................................AGTAGTATCCATTAAGAGGTCGT......................................................................................................................................................................................................2314.0040400000000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGG......................................................................................................................................................................................................2514.0040130000000
............................................................................AAGTAGTATCCATTAAGA............................................................................................................................................................................................................1814.0040000400000
............................................................................AAGTAGTATCCATTAAGAGGTCCC......................................................................................................................................................................................................2414.0040040000000
droPer2
AGTCAGTAAA---------------GTGATCGAGTTTGAATAGTGATTTAGTT-CCACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGA---ACTG--------------------------------------------------TGCGATTAGAGTTATCAATA-------------G------------------------------------GCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................TAAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................2414936.00493612458458601671
..........................................................................TTAAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................241232.00232129196060
...........................................................................TAAGTAGTATCCATTAAGAGGTC........................................................................................................................................................................................................23146.004611228140
..........................................................................TTAAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................25122.00220019021
...........................................................................TAAGTAGTATCCATTAAGAGGTCGC......................................................................................................................................................................................................25118.00181214010
............................................................................AAGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................23118.00180315000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGT......................................................................................................................................................................................................25116.00165110000
..........................................................................TTAAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................23116.0016608020
...........................................................................................................................CCTTTTGATGTACTACTTTAAA.........................................................................................................................................................22111.00111001000
...........................................................................TAAGTAGTATCCATTAAGAGGTCT.......................................................................................................................................................................................................2418.008006020
...........................................................................TAAGTAGTATCCATTAAGAGG..........................................................................................................................................................................................................2117.007205000
...........................................................................TAAGTAGTATCCATTAAGAGGTCC.......................................................................................................................................................................................................2417.007006010
..........................................................................................................................ACCTTTTGATGTACTACTTTAA..........................................................................................................................................................2216.006105000
...........................................................................TAAGTAGTATCCATTAAGAGGTCA.......................................................................................................................................................................................................2416.006006000
...........................................................................................................................CCTTTTGATGTACTACTTTAAAA........................................................................................................................................................2315.005401000
...............................................................................TAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................2015.005013010
...........................................................................TAAGTAGTATCCATTAAGAG...........................................................................................................................................................................................................2014.004004000
...........................................................................TAAGTAGTATCCATTAAGAGGT.........................................................................................................................................................................................................2214.004202000
..........................................................................................................................ACCTTTTGATGTACTACT..............................................................................................................................................................1813.003300000
.............................................................................AGTAGTATCCATTAAGAGGTCG.......................................................................................................................................................................................................2212.002011000
..........................................................................................................................ACCTTTTGATGTACTACTTTA...........................................................................................................................................................2112.002002000
............................................................................AAGTAGTATCCATTAAGAGGTCGT......................................................................................................................................................................................................2412.002101000
...........................................................................TAAGTAGTATCCATTAAGAGGTCGA......................................................................................................................................................................................................2512.002101000
.............................................................................................................................TTTTGATGTACTACTTTA...........................................................................................................................................................1812.002200000
..........................................................................................................................ACCTTTTGATGTACTACTTTAAA.........................................................................................................................................................2312.002200000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCGC......................................................................................................................................................................................................2612.002200000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCC.......................................................................................................................................................................................................2512.002001010
..........................................................................TTAAGTAGTATCCATTAAGAGGTT........................................................................................................................................................................................................2411.001001000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCA.......................................................................................................................................................................................................2511.001010000
..........................................................................TTAAGTAGTATCCATTAAGA............................................................................................................................................................................................................2011.001001000
..........................................................................TTAAGTAGTATCCATTAAGAGGTA........................................................................................................................................................................................................2411.001100000
..........................................................................TTAAGTAGTATCCATTAAGAGG..........................................................................................................................................................................................................2211.001001000
..........................................................................TTAAGTAGTATCCATTAAGAGT..........................................................................................................................................................................................................2211.001000001
...........................................................................TAAGTAGTATCCATTAAGAGGTA........................................................................................................................................................................................................2311.001001000
............................................................................AAGTAGTATCCATTAAGAGG..........................................................................................................................................................................................................2011.001001000
.................................................................................GTATCCATTAAGAGGTCG.......................................................................................................................................................................................................1811.001001000
..........................................................................TTAAGTAGTATCCATTAAGAGGTCT.......................................................................................................................................................................................................2511.001001000
...........................................................................TAAGTAGTATCCATTAAGAGGTAA.......................................................................................................................................................................................................2411.001001000
droWil2
A-------------------------------------------------------------------GATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA---TAT----AGAAAGTA------------------------------------------------TTG--------A---------------AAAAGTGT-----------------------TCATTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................TAAGTAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................241104798.001047980156010455191
............................................................................AAGTAGTAACCTTTAAAGGGTCGT......................................................................................................................................................................................................241516.005160605100
............................................................................AAGTAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................231370.0037001703530
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGT......................................................................................................................................................................................................251355.003550203521
..........................................................................................................................ATCCTTTAAGTTACTACTTGCA..........................................................................................................................................................221330.003300803220
...........................................................................TAAGTAGTAACCTTTAAAGGGTCT.......................................................................................................................................................................................................241251.002510002510
...........................................................................TAAGTAGTAACCTTTAAAGGGTC........................................................................................................................................................................................................231162.001620001620
..........................................................................TTAAGTAGTAACCTTTAAAGGGTC........................................................................................................................................................................................................241103.001030001030
...........................................................................TAAGTAGTAACCTTTAAAGGGTCA.......................................................................................................................................................................................................241102.001020001011
.............................................................................AGTAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................22196.0096000960
...........................................................................TAAGTAGTAACCTTTAAAGGGTCC.......................................................................................................................................................................................................24179.0079000790
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGA......................................................................................................................................................................................................25159.0059000590
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGC......................................................................................................................................................................................................25141.0041000410
...........................................................................TAAGTAGTAACCTTTAAAGGTCG........................................................................................................................................................................................................23130.0030000300
.........................................................................................................................GATCCTTTAAGTTACTACTTGC...........................................................................................................................................................22128.0028020260
............................................................................AAGTAGTAACCTTTAAAGGGTCGTT.....................................................................................................................................................................................................25126.0026010250
...........................................................................TAAGTAGTAACCTTTAAAGGGT.........................................................................................................................................................................................................22118.0018010170
............................................................................AAGTAGTAACCTTTAAAGGGTCGC......................................................................................................................................................................................................24118.0018000180
...................................................................................................TTTGTCCAATTCTTTTAAAGTCG................................................................................................................................................................................23113.0013010120
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGTT.....................................................................................................................................................................................................26111.0011000110
..........................................................................................................................ATCCTTTAAGTTACTACTTGC...........................................................................................................................................................21110.0010000100
..........................................................................TTAAGTAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................25110.0010000100
...............................................................................TAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................20110.0010000100
...........................................................................TAAGTAGTAACCTTTAAAGG...........................................................................................................................................................................................................2017.00701060
..........................................................................................................................ATCCTTTAAGTTACTACTTGT...........................................................................................................................................................2117.00700070
...........................................................................TAAGTAGTAACCTTTAAAGGG..........................................................................................................................................................................................................2116.00600060
............................................................................AAGTAGTAACCTTTAAAGGGT.........................................................................................................................................................................................................2116.00600060
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGTA.....................................................................................................................................................................................................2616.00600060
.............................................................................AGTAGTAACCTTTAAAGGGTCGTT.....................................................................................................................................................................................................2415.00501040
.............................................................................AGTAGTAACCTTTAAAGGG..........................................................................................................................................................................................................1915.00500050
...........................................................................TAAGTAGTAACCTTTAAAGGGTTCG......................................................................................................................................................................................................2515.00500050
...........................................................................TAAGTAGTAACCTTTAAAGTCG.........................................................................................................................................................................................................2214.00400040
..........................................................................TTAAGTAGTAACCTTTAAAGGGT.........................................................................................................................................................................................................2314.00400040
...........................................................................TAAGTAGTAACCTTTAAAG............................................................................................................................................................................................................1914.00400040
..........................................................................................................................ATCCTTTAAGTTACTACTTGCT..........................................................................................................................................................2214.00400040
..............................................................................GTAGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................2114.00400040
.........................................................................................................................GATCCTTTAAGTTACTACTTGT...........................................................................................................................................................2213.00300030
...........................................................................................................................TCCTTTAAGTTACTACTTGCAG.........................................................................................................................................................2213.00301020
..........................................................................TTAAGTAGTAACCTTTAAAGGGTCT.......................................................................................................................................................................................................2513.00300030
............................................................................AAGTAGTAACCTTTAAAGGGTCGTA.....................................................................................................................................................................................................2512.00200020
................................................................................................................................................GAATGTGTTTCTGAAATCAACAAA---A..............................................................................................................................2512.00200020
................................................................................AGTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................1912.00200020
............................................................................AAGTAGTAACCTTTAAAGGGTCGCC.....................................................................................................................................................................................................2512.00200020
..........................................................................................................................ATCCTTTAAGTTACTACTTGCAA.........................................................................................................................................................2312.00200020
..........................................................................................................................ATCCTTTAAGTTACTACTTGCAT.........................................................................................................................................................2312.00200020
...........................................................................TAAGTAGTAACCTTTAAAGGGTCCA......................................................................................................................................................................................................2512.00200020
.............................................................................................................................CTTTAAGTTACTACTTGC...........................................................................................................................................................1811.00100010
...........................................................................TAAGTAGTAACCTTTAAAGGGTCGTTA....................................................................................................................................................................................................2711.00100010
............................................................................AAGTAGTAACCTTTAAAGGGTC........................................................................................................................................................................................................2211.00100010
..........................................................................................................................ATCCTTTAAGTTACTACTTG............................................................................................................................................................2011.00100010
..........................................................................................................................ATCCTTTAAGTTACTACTTGCC..........................................................................................................................................................2211.00100010
.........................................................................................................................GATCCTTTAAGTTACTACTTGCA..........................................................................................................................................................2311.00100010
................................................................................................................................................GAATGTGTTTCTGAAATCAACA....................................................................................................................................2211.00100010
...........................................................................TAAGTAGTAACCTTTAAAGGGTG........................................................................................................................................................................................................2311.00100010
...........................................................................TAAGTAGTAACCTTTAAAGGGTT........................................................................................................................................................................................................2311.00100010
............................................................................AAGTAGTAACCTTTAAAGGGTCTC......................................................................................................................................................................................................2411.00100010
...............................................................................TAGTAACCTTTAAAGGGTC........................................................................................................................................................................................................1911.00101000
.........................................................................................................................GATCCTTTAAGTTACTACTTG............................................................................................................................................................2111.00100010
...........................................................................TAAGTAGTAACCTTTAAAGGGTTT.......................................................................................................................................................................................................2411.00100010
.............................................................................AGTAGTAACCTTTAAAGGGTC........................................................................................................................................................................................................2111.00100010
............................................................................AAGTAGTAACCTTTAAAGGGTCT.......................................................................................................................................................................................................2311.00100010
.................................................................................GTAACCTTTAAAGGGTCG.......................................................................................................................................................................................................1811.00100010
............................................................................AAGTAGTAACCTTTAAAGG...........................................................................................................................................................................................................1911.00100010
droVir3
------------------------------------------------------------------------CCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAA---TCGA------TA---AGAC---------------------------------------------AA--------A------------CTAAAAAATTT--------------------------AAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................TAAGTAGTAACCATTAAGAGGTTG.......................................................................................................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
..........................................................................................................................ACCTTTTAATGTACTACTTATG..........................................................................................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
...........................................................................TAAGTAGTAACCATTAAGAGGTTT.......................................................................................................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTT........................................................................................................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
...........................................................................TAAGTAGTAACCATTAAGAGGT.........................................................................................................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
...........................................................................TAAGTAGTAACCATTAAGAGGTTGT......................................................................................................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
...........................................................................TAAGTAGTAACCATTAAGAGG..........................................................................................................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
...........................................................................TAAGTAGTAACCATTAAGAGGTTC.......................................................................................................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
.........................................................................CTTAAGTAGTAACCATTAAGAGGT.........................................................................................................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
............................................................................AAGTAGTAACCATTAAGAGGTTG.......................................................................................................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTA.......................................................................................................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
..........................................................................................................................ACCTTTTAATGTACTACTTA............................................................................................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGA......................................................................................................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGC......................................................................................................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGTT.....................................................................................................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGTC.....................................................................................................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
..........................................................................TTAAGTAGTAACCATTAAGAGGTTG.......................................................................................................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
.............................................................................AGTAGTAACCATTAAGAGGTTG.......................................................................................................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
..........................................................................TTAAGTAGTAACCATTAAGAGGTT........................................................................................................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
...........................................................................TAAGTAGTAACCATTAAGA............................................................................................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
..........................................................................................................................ACCTTTTAATGTACTACTTAT...........................................................................................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
..........................................................................................................................ACCTTTTAATGTACTACTTATT..........................................................................................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
...........................................................................TAAGTAGTAACCATTAAGAG...........................................................................................................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGTTT....................................................................................................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTC........................................................................................................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGTA.....................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
..........................................................................................................................ACCTTTTAATGTACTACTTATC..........................................................................................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................TTAAGTAGTAACCATTAAGAGGT.........................................................................................................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGC.........................................................................................................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CTTTTAATGTACTACTTATGACA.......................................................................................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
...................................................................................................TTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATG..........................................................................................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTCT.......................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
...........................................................................................................................CCTTTTAATGTACTACTTATG..........................................................................................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
.........................................................................CTTAAGTAGTAACCATTAAGAGG..........................................................................................................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
.................................................................................GTAACCATTAAGAGGTTG.......................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
.........................................................................................................................CACCTTTTAATGTACTACTTATG..........................................................................................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTTGTCC....................................................................................................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................AGTAACCATTAAGAGGTTG.......................................................................................................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................................CTTTTAATGTACTACTTATG..........................................................................................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................ACCTTTTAATGTACTACT..............................................................................................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
...........................................................................TAAGTAGTAACCATTAAGAGGTCC.......................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010

Generated: 10/20/2015 at 10:13 PM