ID:

dya_1495

 Coordinate:

X:21636359-21636509 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -3.9 -3.7

Flybase annnotation

exon [dyak_GLEANR_19244:3]; CDS [Dyak\GE17948-cds]; intron [Dyak\GE17948-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGTTCGTATTTGGAGATGATGAGCAGGTCTTAAAAAGAAGCTTAAAGCAAGCGGGAAAGCTCTGGCCCAAGCCACATACATTTAAAAGTGAATAGTTTCATAGTAAATTGTTGTTGTAAGTTGTTTTTAGTTGCCTGTCAAATTAAACATATCACATTTAAAATCCGACCTGCGGGGCGTTCCTTTGCAAATCACCGAAGAACCGGGACACGCATGATAGCAAGGGCGCCGGTACTGCCCGGCAACGCCG
************************************************************************************************..............((((...((((((((.(((((((........))))))).)))....))))).....)))).******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 V058
head
 M056
embryo
...................................................................................................................................................ACATATCACATTTAAAATCCGACC................................................................................ 24 0 1 4.00 4 4 0 0 0
................................................................................................TTTCATAGTAAATTGTTGTTGTAAG.................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
...................................................................................................................................................ACATATCACATTTAAAATCCGAC................................................................................. 23 0 1 2.00 2 2 0 0 0
.......................................................................................................................................................................................................................TGATAGCAAGGGCGCCGGTACTGC............ 24 0 1 1.00 1 1 0 0 0
.........................AGGTCTTAAAAAGAAGCTTAAAGC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................................................TCACATTTAAAATCCGACCTGCGGGGC........................................................................ 27 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................TTTGCAAATCACCGAAGAACCGGGACA........................................ 27 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................TAGCAAGGGCGCCGGTACTGCCCGG........ 25 0 1 1.00 1 0 0 0 1
......................................................................................................................................................................................CCTTTGCAAATCACCGAAGAACCGG............................................ 25 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................TCACCGAAGAACCGGGACACGCATGA................................. 26 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................TTGCAAATCACCGAAGAACCGGGACA........................................ 26 0 1 1.00 1 0 1 0 0
..................................................AGCGGGAAAGCTCTGGCCCAAGCCACA.............................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
................................................................................................TTTCATAGTAAATTGTTGTTGTAAGT................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
........................................................................................................................................................TCACATTTAAAATCCGACCTGCGGGG......................................................................... 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................TGTTTTTAGTTGCCTGTCAAATTAAAA...................................................................................................... 27 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................GCATGATAGCAAGGGCGCCGG.................. 21 0 1 1.00 1 1 0 0 0
....................................................CGGGAAAGCTCTGGCCCAAGCCAC............................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................................................TCACATTTAAAATCCGACCTGCGT........................................................................... 24 1 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................TGCAAATCACCGAAGAACCGGGACA........................................ 25 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................ACGCATGATAGCAAGGGCGCCG................... 22 0 1 1.00 1 1 0 0 0
.....................................................GGGAAAGCGCTGGCCAAAGC.................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0
........................................................................................................................................................TCACATTTAAAATCCGACCTGCGCGGC........................................................................ 27 1 1 1.00 1 1 0 0 0
................................................................................................TTTCATAGTAAATTGTTGTTGTA.................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................TCCTTTGCAAATCACCGAAGAACCGG............................................ 26 0 1 1.00 1 1 0 0 0
...........................................TAAGGCAATCGGGAAAGCTCA........................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0
...........................................TAAGGCAAGCGGGGAAGCTCA........................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0
...........................................TAAGGCAAGTGGGGAAGCTC............................................................................................................................................................................................ 20 3 6 0.50 3 0 0 3 0
...........................................TAAGGCACGTGGGAAAGCTC............................................................................................................................................................................................ 20 3 5 0.20 1 0 0 1 0
...........................................TAAGGCAAGCGGGGAAGCTG............................................................................................................................................................................................ 20 3 10 0.10 1 0 0 1 0
..............................................................................................................GGTGTTGTAAGTTGTTTAT.......................................................................................................................... 19 2 10 0.10 1 0 0 1 0
...................................................................................................................................................................ATCCGAGCTCCGGCGCGT...................................................................... 18 3 20 0.05 1 0 0 1 0
...................................................................................................................................................................ATCAGACCTGGGGGGAGT...................................................................... 18 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

CTCAAGCATAAACCTCTACTACTCGTCCAGAATTTTTCTTCGAATTTCGTTCGCCCTTTCGAGACCGGGTTCGGTGTATGTAAATTTTCACTTATCAAAGTATCATTTAACAACAACATTCAACAAAAATCAACGGACAGTTTAATTTGTATAGTGTAAATTTTAGGCTGGACGCCCCGCAAGGAAACGTTTAGTGGCTTCTTGGCCCTGTGCGTACTATCGTTCCCGCGGCCATGACGGGCCGTTGCGGC
********************************************************************************..............((((...((((((((.(((((((........))))))).)))....))))).....)))).************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V046
embryo
 V120
male body		 V058
head
...............................................................................GTAAATTTTCACTTATCAAAGTATCAT................................................................................................................................................. 27 0 1 17.00 17 16 0 1 0 0 0
.........AAACCTCTACTACTCGTCCAGAATTT........................................................................................................................................................................................................................ 26 0 1 15.00 15 15 0 0 0 0 0
..............................................................................................................................................................................................................CCTGTGCGTACTATCGTTCCCGCGGC................... 26 0 1 12.00 12 0 12 0 0 0 0
........................................................................................................................................................................TGGACGCCCCGCAAGGAAACGTTTAGT........................................................ 27 0 1 10.00 10 1 9 0 0 0 0
..................................................................................................................................CAACGGACAGTTTAATTTGTATAGTGT.............................................................................................. 27 0 1 10.00 10 10 0 0 0 0 0
.................................................................................................................................................................................................................GTGCGTACTATCGTTCCCGCGGCCAT................ 26 0 1 9.00 9 8 1 0 0 0 0
...................................................CGCCCTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 26 0 1 8.00 8 8 0 0 0 0 0
............................................TTTCGTTCGCCCTTTCGAGACCGGGT..................................................................................................................................................................................... 26 0 1 8.00 8 7 0 1 0 0 0
.........AAACCTCTACTACTCGTCCAGAATT......................................................................................................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0
.........................................................................................................................................................................GGACGCCCCGCAAGGAAACGTTTAGT........................................................ 26 0 1 4.00 4 4 0 0 0 0 0
.......................................................................................................................TCAACAAAAATCAACGGACAGTTTAAT......................................................................................................... 27 0 1 4.00 4 3 0 1 0 0 0
........................................................................................................................................ACAGTTTAATTTGTATAGTGTAAATT......................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0
......................................................................................................................................GGACAGTTTAATTTGTATAGTGTAAATT......................................................................................... 28 0 1 3.00 3 2 0 1 0 0 0
.................................................................................AAATTTTCACTTATCAAAGTATCAT................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
...........ACCTCTACTACTCGTCCAGAATTT........................................................................................................................................................................................................................ 24 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................................................CCTGTGCGTCCTATCGTTCCCGCGGC................... 26 1 1 3.00 3 0 3 0 0 0 0
....................................................................................................................................ACGGACAGTTTAATTTGTATAGTGT.............................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
.............................................TTCGTTCGCCCTTTCGAGACCGGGT..................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................................................CCTGTGCGTACTCTCGTTCCCGCGGC................... 26 1 1 3.00 3 0 3 0 0 0 0
.................................................................CGGGTTCGGTGTATGTAAATTTTCACT............................................................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0
...............................................................................................................................................................................CCCGCAAGGAAACGTTTAGTGGCTTC.................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.......ATAAACCTCTACTACTCGTCCAGAATT......................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.............................................TTCGTTCGCCCTTTCGAGACCGGGTT.................................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0
..............................................TCGTTCGCCCTTTCGAGACCGGGTT.................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
..........AACCTCTACTACTCGTCCAGAATTT........................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
...........................................................................GTATGTAAATTTTCACTTATCAAAGT...................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
CTCAAGCATAAACCTCTACTACTCGT................................................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.....GCATAAACCTCTACTACTCGTCCAGAAT.......................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
..................................TTTCTTCGAATTTCGTTCGCCCT.................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................TAGGCTGGACGCCCCGCAAGGAAACGTT............................................................ 28 0 1 2.00 2 0 2 0 0 0 0
...............................................CGTTCGCCCTTTCGAGACCGGGTTCGGT................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................GCTGGACGCCCCGCAAGGAAACGTTT........................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................CATTTAACAACAACATTCAACAAAAAT......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................GGCTTCTTGGCCCTGTGCGTACTATCG............................. 27 0 1 1.00 1 1 0 0 0 0 0
.........AAACCTCTACTACTCGTGCAGAATTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................CCGCAAGGAAACGTTTAGTGGCTTCT................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GTAAATTTTCACTTATCAAAGTA..................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.............................................CTCGTTCGCCCTTTCGAGACCGGGTT.................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
.....................................................CCCTTTCGAGCCCGGGTTCGGTGTAT............................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0
......................................................CCTTTCGAGACCGGGTTCGGTGTAT............................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................CCCGCAAGGAAACGTTTAGTGGCTTCTT................................................ 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................CCGCAAGGAAACGTTTAGTGGCTTCTT................................................ 27 0 1 1.00 1 0 0 1 0 0 0
.............................................................................ATGTAAATTTTCACTTATCAAAGTAT.................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................CGCCCTTTCGAGACCGGGTTCGGT................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
...............CTACTACTCGTCCAGAATTTTTCGT................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................CAAAGGACAGTTTAATTTGTATAGTGT.............................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TAGGCTGGACGCCCTGCAAGGAAACGTT............................................................ 28 1 1 1.00 1 0 1 0 0 0 0
..........................................................TCGAGACCGGGTTCGGTGTATGT.......................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
......................................................................TCGGTGTATGTAAATTTTCACTTATCAA......................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................TAGGCTGGACGCCCGGCAAGGAAACGTT............................................................ 28 1 1 1.00 1 0 1 0 0 0 0
...........................................................CGAGACCGGGTTCGGTGTATGTAA........................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................TTCTTGGCCCTGTGCGTACTATCGT............................ 25 0 1 1.00 1 1 0 0 0 0 0
..................CTACTCGTCCAGAATTTTTCTTCGAAT.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
............CCTCTACTACTCGTCCAGAATTTTT...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........AAACCTCTACTACTCGTCCAGAATTTT....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................CGGACAGTTTAATTTGTATAGTGTAAAT.......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................TCGTTCGCCCTTTCGATACCGGGTT.................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TAGGCTGGACGCCCCGCAAGAAAACGTTT........................................................... 29 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................ATAGTGTAAATTTTAGGCTGGACGCCC.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................GCCCTTTCGAGACCGGGTTCGGTGTA............................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................CGCAAGGAAACGTTTAGTGGCTTCTT................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................CAACGGACAGTTTAATTTGTATATTTT.............................................................................................. 27 2 1 1.00 1 0 0 1 0 0 0
...........................................................................GTATGTAAATTTTCACTTA............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................GTGGCTTCTTGGCCCTGTGCGTACT................................. 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................CCCGCAAGGAAACGTTTAGTGGCTT................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................ACGCCCCGCAAGGAAACGTTTAGT........................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................ATGTAAATTTTCACTTATCAAAGT...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................GTGCGTACTATCGTTCCCGAGGCCAT................ 26 1 1 1.00 1 0 1 0 0 0 0
....................................................GCCCTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GTAAATTTTCACTTATCAAAGTATCATT................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TTAACAACAACATTCAACGAAAATCAA...................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................CGCCCCGCAAGGAAACGTTTAGT........................................................ 23 0 1 1.00 1 1 0 0 0 0 0
............................................GTTCGTTCGCCCTTTCGAGACCGGGTT.................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................AGGCTGGACGCCCCGCAAGGAAACGTTT........................................................... 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................GGTGTATGTAAATTTTCACTTATCAA......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
................................................GTTCGCCCTTTCGAGACCGGGTTCGGT................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.................................................TTCGCCCTTTCGAGACCGGGTT.................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TAGGATGGACGCCCCGCAAGGAAACGTT............................................................ 28 1 1 1.00 1 0 1 0 0 0 0
...................................................CGCCCTTTCGAGACCGGGTTCGGTTT.............................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0
.........AAACCTCTACTACTCGTACAGAATTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGCCCTTTCGAGACCGGGTTCGGTG............................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CAAAGTATCATTTAACAACAACAT.................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................CTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0
...........ACCTCTACTACTCGTACAGAATTT........................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................GCCTTCTTGGCCCTGTGCGTACTATC.............................. 26 1 1 1.00 1 0 0 0 0 1 0
..........................................................................TGTATGTAAATTTTCACTTATCAAAGT...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................ATTTAACAACAACATTCAACAAAAAT......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................................TCGCCCTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TAGGCTGGACGCCCAGCAAGGAAACGTT............................................................ 28 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................AAGGAAACGTTTAGTGGCTTCTTGGCCC........................................... 28 0 1 1.00 1 1 0 0 0 0 0
............CCTCTACTACTCGTCCAGAATTTTTCT.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................ACGGACAGTTTAATTAGTATAGTG............................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................CGGGTTCGGTGTATGTAAATTTTCA................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................CGGACAGTTTAATTTGTATAGTGT.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................GTTCGGTGTATGTAAATTTTCACTTAT............................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
................................................GTTCGCCCTTTCGAGACCGGGTTCGGTG............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................AGGCTGGACGCCCCGCAAGGAAACGT............................................................. 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................ACGGACAGTTTAATTTGTATAGTGTAAA........................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GGCTGGACGCCCCGCAAGGAAACGT............................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................CCAGAATTTTTCTTCGAATTTCGT......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
..................................................................GGGTTCGGTGTATGTAAATTTTCACT............................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
.................................................TTCGCCCTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TCAACAAAAATCAACGGATAGTTTAAT......................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
......................................................CCTTTCGAGACCGGGTTCGGTGT.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
................................................................CCGGGTTCGGTGTATGTAAATTTTCACT............................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................AGGCGGGACGCCCCGCAAGGAAACGTTT........................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.....................................................CCCTTTCGAGACCGGGTTCGGT................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
......................................................................CCGGTGTATGTAAATTTTCATTTA............................................................................................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0
...........................................ATTTCCTTCGCCCTTTCGGGACCGGGT..................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................GCTGGACGCCCCGCAAGGAAACGT............................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.......................................TCGAATTTCGTTCGCCCTTTCGAGA........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................TGGTATCGTGTAAGTTTTAGG.................................................................................... 21 3 14 0.07 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 X:21636309-21636559 + dya_1495 GAGTTCGTATTTGGAGATGATGAGCAGGTCTTAAAAAGAAGCTTAAAGCAAGCGGGAAAGCTCTGGCCCAAGCCACATACATTTAAAAGTGAATAGTTTCATAGTAAATTGTTGTT-GTAAGTTGTTTTTAGTTGCCTGTCAAATTAAACATATCACATTTAAA-ATCCGACCTGCGGGGCGTTCCTTTGCAAATCACCGAAGAACCGGGACACGCATGATAGCAAGGGCGCCGGTACTGCCCGGCAACGCCG
droSec2 scaffold_39:228958-229047 + AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTGCGGGGCGTTCTCCTTCAAATCACCGGACGACCGGGACACGGATAATAGCAAGGTCGTCTGTACTGTCCGCCAACGCCT
droSim2 x:20731134-20731224 + AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTGCGGGGCGTTCTCCTGCAAATCACCGGACGACCGGGACACGGATAATAGCAAGGTCGTCTGTACTGTCCGCCAACGCCT
droTak1 scf7180000414706:4295-4381 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTCGGGGGGCGTTCTTTTGCAAATAACCGGACGAGCGGGACAAGGGTAGTAGCAAGGTCGCCGGCTCGCTTCACCCACGCCT
droEle1 scf7180000491087:588296-588372 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGCGTTCTTTTGCAGGCCACCGGACGGGCGGGGCACGGGTGGTAGCAAGGTCGCCGGTTCTCAGCACCCACGGCC
droRho1 scf7180000777207:1822-2025 - AAATTCGTATCCA---ATTACTCACTGT------------TTCTGGGGCGAGCGTGGCAGTTCTGGT------------------------------TGAGCAGTTGACAGTTGTTGGCCAGCAGCTTGCAGCT---CTGCAAATTGCGCGT-TCGCACGCAGATCTCCTTCTCGGGGGGCGTTCGCCTGCAAATCACCGGGCGGGCGGGGCAGGGGTGGTAGCAAGGTCGCCGGTGAGCACCGCCCACTGCG
droFic1 scf7180000453495:52387-52469 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------CC----GCGGCGGCGTCTTCCTGCAGACCACCGGGCGGGATGGACAGGGGTGGTAGCACGGTCGCCGGAGAGCGCTGCCCACCCCG
droAna3 scaffold_12929:1094343-1094429 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTCGGGGGGAGTCCTCCGACAAGCGACAGGACGGGCGGGACAGGGATAGAAGCAGGGGCGGCGCTTCGAGGCGCCCACACCC
droBip1 scf7180000396380:19159-19245 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTCGGGCGGCGTTCTTCGGCAGATGACAGGACGTGCTGGGCAGGGATAGAAGCAGGGCCGGCGATTCGAGGCACCCACTCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GAGTTCGTATTTGGAGATGATGAGCAGGTCTTAAAAAGAAGCTTAAAGCAAGCGGGAAAGCTCTGGCCCAAGCCACATACATTTAAAAGTGAATAGTTTCATAGTAAATTGTTGTT-GTAAGTTGTTTTTAGTTGCCTGTCAAATTAAACATATCACATTTAAA-ATCCGACCTGCGGGGCGTTCCTTTGCAAATCACCGAAGAACCGGGACACGCATGATAGCAAGGGCGCCGGTACTGCCCGGCAACGCCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................ACATATCACATTTAAA-ATCCGACC................................................................................2414.00404000000000
................................................................................................TTTCATAGTAAATTGTTGTT-GTAAG...................................................................................................................................2512.00202000000000
....................................................................................................................................................ACATATCACATTTAAA-ATCCGAC.................................................................................2312.00202000000000
.........................................................................................................................................................................................................................TGATAGCAAGGGCGCCGGTACTGC............2411.00101000000000
.........................AGGTCTTAAAAAGAAGCTTAAAGC............................................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................TCACATTTAAA-ATCCGACCTGCGGGGC........................................................................2711.00101000000000
..........................................................................................................................................................................................TTTGCAAATCACCGAAGAACCGGGACA........................................2711.00101000000000
............................................................................................................................................................................................................................TAGCAAGGGCGCCGGTACTGCCCGG........2511.00100100000000
........................................................................................................................................................................................CCTTTGCAAATCACCGAAGAACCGG............................................2511.00101000000000
..................................................................................................................................................................................................TCACCGAAGAACCGGGACACGCATGA.................................2611.00101000000000
...........................................................................................................................................................................................TTGCAAATCACCGAAGAACCGGGACA........................................2611.00100000010000
..................................................AGCGGGAAAGCTCTGGCCCAAGCCACA................................................................................................................................................................................2711.00101000000000
................................................................................................TTTCATAGTAAATTGTTGTT-GTAAGT..................................................................................................................................2611.00101000000000
.........................................................................................................................................................TCACATTTAAA-ATCCGACCTGCGGGG.........................................................................2611.00101000000000
...........................................................................................................................TGTTTTTAGTTGCCTGTCAAATTAAAA.......................................................................................................2711.00101000000000
......................................................................................................................................................................................................................GCATGATAGCAAGGGCGCCGG..................2111.00101000000000
....................................................CGGGAAAGCTCTGGCCCAAGCCAC.................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................TCACATTTAAA-ATCCGACCTGCGT...........................................................................2411.00100000010000
............................................................................................................................................................................................TGCAAATCACCGAAGAACCGGGACA........................................2511.00101000000000
....................................................................................................................................................................................................................ACGCATGATAGCAAGGGCGCCG...................2211.00101000000000
................................................................................................TTTCATAGTAAATTGTTGTT-GTA.....................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................TCCTTTGCAAATCACCGAAGAACCGG............................................2611.00101000000000
droSec2
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTGCGGGGCGTTCTCCTTCAAATCACCGGACGACCGGGACACGGATAATAGCAAGGTCGTCTGTACTGTCCGCCAACGCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................CAAATCACCGGACGACCGGGA..........................................2111.0010010
droSim2
AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCGCCCTGCGGGGCGTTCTCCTGCAAATCACCGGACGACCGGGACACGGATAATAGCAAGGTCGTCTGTACTGTCCGCCAACGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................ATAGCAAGGTCGTCTGTACTG.............2111.00100000000100000000
................................................................................................................................................................................................................................AAGGTCGTCTGTACTGTCCGC........2111.00100000000001000000
...................................................................................................................................................................................................CACCGGACGACCGGGACACGG.....................................2111.00100000000001000000
droTak1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTCGGGGGGCGTTCTTTTGCAAATAACCGGACGAGCGGGACAAGGGTAGTAGCAAGGTCGCCGGCTCGCTTCACCCACGCCTSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGCGTTCTTTTGCAGGCCACCGGACGGGCGGGGCACGGGTGGTAGCAAGGTCGCCGGTTCTCAGCACCCACGGCCSizeHit CountTotal NormTotal
No Reads
droRho1
AAATTCGTATCCA---ATTACTCACTGT------------TTCTGGGGCGAGCGTGGCAGTTCTGGT------------------------------TGAGCAGTTGACAGTTGTTGGCCAGCAGCTTGCAGCT---CTGCAAATTGCGCGT-TCGCACGCAGATCTCCTTCTCGGGGGGCGTTCGCCTGCAAATCACCGGGCGGGCGGGGCAGGGGTGGTAGCAAGGTCGCCGGTGAGCACCGCCCACTGCGSizeHit CountTotal NormTotal
No Reads
droFic1
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------CC----GCGGCGGCGTCTTCCTGCAGACCACCGGGCGGGATGGACAGGGGTGGTAGCACGGTCGCCGGAGAGCGCTGCCCACCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTCGGGGGGAGTCCTCCGACAAGCGACAGGACGGGCGGGACAGGGATAGAAGCAGGGGCGGCGCTTCGAGGCGCCCACACCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTCGGGCGGCGTTCTTCGGCAGATGACAGGACGTGCTGGGCAGGGATAGAAGCAGGGCCGGCGATTCGAGGCACCCACTCCCSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 12:58 AM