ID:

dya_1468

 Coordinate:

X:18160013-18160163 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.82 -9.52 -9.32

Flybase annnotation

exon [dyak_GLEANR_16953:7]; CDS [Dyak\GE15438-cds]; intron [Dyak\GE15438-in]

Repeatable elements

NameClassFamilyStrand
(TTTTG)nSimple_repeatSimple_repeat+
mature
  1. 2L:3618935-3618956 +
  2. X:815832-815853 +
  3. X:5638428-5638449 -
  4. X:7873712-7873733 -
  5. X:15993882-15993903 +
  6. dya_1468  X:18160064-18160085 -
  7. 3R:22556823-22556844 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGTACATCCGAACACCTGTACACCTGTACACTCATACACCTGTACACACGCCTGTGTTGTTGTGTTCCCTTTTTGGCTGCCATCTTCAAAATTCGTCCATAAATCAACTAAAATCGTAAACAAAACAAAACAAAAAAAACAAAAAAAAAAAAAACAAAATAAAAACAAACGCAATCGAACAATTGAACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
**************************************************.....(((((...(((((....(((((.(((..........................................................................................))).))))).....))))).....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V046
embryo
 V058
head
 GSM1528802
follicle cells		 V052
head
 V120
male body		 M056
embryo
 M043
female body
............................................................................................................................................................................................................AAAGGAATACGGTGTCGCCTCAAAT...................... 25 0 1 12.00 12 0 0 12 0 0 0 0
............................................................................................................................AACAAAACAAAAAAAACAAACAAAAAAAAACAAAAA........................................................................................... 36 3 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................AAACAAAACAAAAAAAACAAAAAAAAAAAAAAAAA............................................................................................. 35 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................ACAAAAAAAACAAAAAAAAAAAAAACAAAAAAAAAA..................................................................................... 36 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................AAAACAAAACAAAAAAAAAAAAAAAAACAAAAACAA............................................................................................. 36 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................AAAAAAAAAAAAAAAAAAAACAAAATATAAACAAA................................................................................. 35 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAGAAACAAAAAAAAAAC.................................................................................... 35 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................AAAAAAAACAAAACAAAAAAAACAAAAACAAAACAA................................................................................................. 36 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................AACAAAACAAACAAAAAAAAGAAAAAAAAAATAAAA...................................................................................... 36 3 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AAAAAAAAACAAAAGAAACAAAAAAAAAAACAACAA............................................................................................. 36 3 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGTCGCC............................ 25 0 1 1.00 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................GAATAGTCTAAAGGAATACGGT.................................. 22 2 1 1.00 1 0 0 0 0 0 1 0
...............................................................................................................................ACAAAAAAAAAAACAAAAAAAAAAAAAACAAAATAA........................................................................................ 36 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................AACAAGACAAAACAAAAAAAAAAAAAAAAAAAAAAA................................................................................................ 36 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAACCAAAACAAAAACA................................................................................... 36 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................ATCAACAGTCTAAAGGAATACGGTGTC............................... 27 0 1 1.00 1 0 0 0 0 1 0 0
................................................................................................................................AAAAAAAAAAAAGAAAAAAAAAAAAAACAAAATAAA....................................................................................... 36 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................AAAAAAACAAAAAAAAATAAAACAAAATAAAAAAAA.................................................................................. 36 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................AAAAAAACAAAACAAACAAAAACAAAAAAAAAACA................................................................................... 35 3 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGTCGCCTC.......................... 27 0 1 1.00 1 0 0 0 0 1 0 0
......................................................................................................................AAACAAAACAAAAAAAAAAAAACAGAAAGAAAAAAA................................................................................................. 36 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................AACAAAAACAAAAAAAAAAAAAACAAAACACAAACA................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................AACAAAACAACAAAAACAAAAAAACAAAAAACAAAA........................................................................................... 36 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AAAACAAAAAACAAAAAACAAAAAAAAAAAAAACAA............................................................................................. 36 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................AAAAAAACAACACATAAAAAACAAAAAAAAAAAAAA................................................................................................ 36 3 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAAACAAAAAAAAAACA................................................................................... 36 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................AACACAAAAAAAAAAACAAAAAAAAAAAAAACAAAA........................................................................................... 36 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................ACAACAAAACAAAAAAAAAAAAAAAAAAAAAAACAA............................................................................................. 36 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AAAACAAAAAAAAAAAAACAAAAAAAACAAAAACAA............................................................................................. 36 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................GAAAAAAAAACAAAACCAAAAAAACAAAAAAAAAAA................................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAAAAACAAAACAAA....................................................................................... 36 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGTCTAAAGGAATACGGTGTCGCCTCA......................... 29 0 1 1.00 1 0 0 0 0 1 0 0
......................................................................................................................AAACAAAACAAAACAAAACAAACAAAAACAAAAAAA................................................................................................. 36 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................AAACAAAAAAAACAAAAAAAAAAAAAACAAAAAAAA....................................................................................... 36 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................AAAAAACAAAAAAAAAAACAACAAAAAAAAAACAAA................................................................................. 36 2 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACACAATAAAAACAA.................................................................................. 36 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................AAAAAAAAAAAAAAAAAAACAAAATAATAACACAC................................................................................ 35 3 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................AAACAAAACAAAACAAAAAAAAAAAAAAAACAATAA................................................................................................. 36 3 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................AAAAAAAACAAAAAAAACAAAAACAAAAAAAACACA............................................................................................ 36 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAACAAAAAACACAAAAAAAAAATAA........................................................................................ 36 3 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACGAGATAAAAACA................................................................................... 36 3 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................GAAACAAAACAAAAAAAACAAAAAAAAACAAAAAAA............................................................................................. 36 3 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................CCAAAAAAAACAAAACAAACAAAAAAAAAAAAAACA.............................................................................................. 36 3 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................ACAAAACCAAAAAAACAAAAAAAACAAAAACAAAAA.......................................................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAACAAAAACAAAAAAAACACA................................................................................... 36 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAAAAAAAAAAAAAAAAACAAATTAA........................................................................................ 36 2 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAACAAACAAAAAAAAAACAAAAAAA........................................................................................ 36 2 3 0.33 1 0 0 0 1 0 0 0
............................................................................................................................AAGAAAACAAGAAAAAAAAAAAAAAAAAAAACAAAA........................................................................................... 36 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................AACAAAAAAAACAAAAAACAAAAAAACAAACAAAAA...................................................................................... 36 3 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................................AAAAAACAAAAAAAAAAAAAACAAACAAAAAACAAA................................................................................. 36 2 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................AAACAAAAGAAAACAAAAAAACAAAAAAAAAAAAAA................................................................................................. 36 3 3 0.33 1 0 0 0 1 0 0 0
.....................................................................................................................................AAAACAAAAAAAAAACAAAAAACAAAATAAAAACAA.................................................................................. 36 3 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................AAAAAAAAAAAAACACAAAAAAAAAAAAGAAAATAA........................................................................................ 36 3 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................AAACAAAAAAAAACAAACAAAACAAAAAACAAAAAA................................................................................................. 36 3 3 0.33 1 0 0 0 1 0 0 0
..........................................................................................................................AACACAAAAAAAAAAAAACAAAAAAAAAAAAAATAA............................................................................................. 36 3 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................AAAGCAAAAAAAACAGAAAAAAAAAAAACAAAAAAA........................................................................................ 36 3 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................AAAAAAACAAAACAAAAAAAACAAACAAACAAAAA................................................................................................. 35 3 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAACAAAAACAA.................................................................................. 36 2 9 0.22 2 1 1 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAACAAAACAAAATCAAAACAA.................................................................................. 36 3 5 0.20 1 0 1 0 0 0 0 0
.........................................................................................................................AAAAACAAAACACAAAAAAAAAAAAAAAAAAAAACA.............................................................................................. 36 3 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................................AAAAAAAAAAAAAAAAAAACAAAACACAAACAAAC................................................................................ 35 3 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................................TAAAAAAACAAAAAAAAAAAAAAAAAAATAAACACA................................................................................... 36 3 5 0.20 1 1 0 0 0 0 0 0
...............................................................................................................................AAAAAAAAAAAAACAAAAAAAAAAAAAACACAAGAA........................................................................................ 36 3 5 0.20 1 0 0 0 1 0 0 0
.....................................................................................................................................AAAAAAACAAAAAAAAAAAAAACACAAAACAAACAA.................................................................................. 36 3 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................AAGAGAACAAAAAAAACAAAAAAAAAAAAAAAAAAA........................................................................................... 36 3 6 0.17 1 0 0 0 1 0 0 0
..................................ATACACCTGTTCCCACGCCG..................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1
................................................................................................................................AAACAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAA....................................................................................... 36 2 20 0.15 3 3 0 0 0 0 0 0
......................................................................................................................AAACAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAA................................................................................................. 36 2 20 0.15 3 3 0 0 0 0 0 0
............................................................................................................................AAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAAAA........................................................................................... 36 2 20 0.15 3 1 2 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAAACAAAAAAAAAAAA................................................................................... 36 2 20 0.15 3 3 0 0 0 0 0 0
................................................................................................................................AAACAAAAAAAACAAAAAAAAA..................................................................................................... 22 0 7 0.14 1 0 0 0 0 0 1 0
....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAACAAAAACA................................................................................... 36 2 7 0.14 1 1 0 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAATAAAATAAAATAAAAACAA.................................................................................. 36 3 7 0.14 1 0 1 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAACAAAAAAAAAAAAAAAAAAACAA........................................................................................ 36 2 8 0.13 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAAACAAAAAAAAAAAAAGAAAATAAAAACA................................................................................... 36 3 8 0.13 1 0 1 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAAAAAAAACAAAAAAAACAAAACAA........................................................................................ 36 3 8 0.13 1 0 1 0 0 0 0 0
....................................................................................................................................AAAAAAAAAAAAAAAGAAAAAAACAAAACAAAAACA................................................................................... 36 3 8 0.13 1 0 1 0 0 0 0 0
..................................................................................................................................ACAAAAAAAAGAAAAAAAAAAAAAACAAAAAAAAAA..................................................................................... 36 2 8 0.13 1 0 1 0 0 0 0 0
................................................................................................................................AAAAAAAAAAAACAAAAAAAAAAACAACAAAATTAA....................................................................................... 36 3 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................AACAAAAAAAAAAAAACAAAAAAAAAACCAACAAAA........................................................................................... 36 3 9 0.11 1 0 0 0 1 0 0 0
...............................................................................................................................AAAAAAAAAAAAACAAAAAAACAAAAAACAAAAGAA........................................................................................ 36 3 9 0.11 1 0 1 0 0 0 0 0
.......................................................................................................................AAAAAAACACAACAAAAAAAAAAAAAAAAAAAAAAA................................................................................................ 36 3 20 0.10 2 2 0 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAATAAAAAAACAAAACAAAAACAA.................................................................................. 36 3 10 0.10 1 0 1 0 0 0 0 0
................................................................................................................................AAACAAAAAAAACAAAAAAAAAAAAAAAAAAACAAA....................................................................................... 36 2 10 0.10 1 1 0 0 0 0 0 0
.......................................................................................................................AAAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAA................................................................................................ 36 2 20 0.10 2 1 1 0 0 0 0 0
........................................................................................................................ACAAAAAAAAACAAAACAAACAAAAAAAAAAAAAAA............................................................................................... 36 3 11 0.09 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAAAAAAAAAAAAAAGAACAAAACAAAAACA................................................................................... 36 3 11 0.09 1 0 1 0 0 0 0 0
...........................................................................................................................................AAAAAAAAAAAAAAAACAAAAAAAAAACAAACACAA............................................................................ 36 3 12 0.08 1 0 0 0 1 0 0 0
................................................................................................................................AAAAAAAAAAAACAAAAAAAACAAAAACAAAACAAA....................................................................................... 36 3 13 0.08 1 0 1 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAACAAAAACA................................................................................... 35 2 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................CCAAAAAAAACAAACAAAAAAAAAACAAAAAAAAAA..................................................................................... 36 3 14 0.07 1 1 0 0 0 0 0 0
............................................................................................................................AATAAAACAAAAAAAAAAAAAAAAAAAAAAACAACA........................................................................................... 36 3 14 0.07 1 1 0 0 0 0 0 0
.....................................................................................................................................AAAAAAACAAAAAAAAAAAAAACAAAACAAAAAAAA.................................................................................. 36 2 14 0.07 1 0 0 0 1 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAAA................................................................................................ 23 0 16 0.06 1 0 0 0 0 0 0 1
....................................................................................................................................AAAAAAAAAAAAAAAACAAAAAACAAAACAAAAACA................................................................................... 36 3 18 0.06 1 0 1 0 0 0 0 0
................................................................................................................................AAACAAAAAAAACAAAAAAAAGAAAAAAAAAAAAAA....................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAA................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................AAAAAAAAAAAAAAAAAAAAACAAATTAAAAAAAAA................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................AAAAAAAAAAAAAAAAAAAAACAAAACAACAACAAA................................................................................. 36 3 20 0.05 1 0 0 0 1 0 0 0
................................................................................................................................AAAAAAAAATAACAAAAAAAAAAAAAAAAAAATAAA....................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................AAAAAACAAAAAAAAAAAA.................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................AACAAAAACAAAAAAAAAAAAAACAAAACAAAAAAA................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................AAAAAAAACAAAACGAAAAAAAAAAAAAAAAAAAAA................................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................AAAAAAAAAAAAACACAAAAAAAAAAAACAAAAAAA........................................................................................ 36 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAACAAAAAC.................................................................................... 35 2 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................AAAAAAAAAAAAACAAAAAAAACAAAAAAAAAAAAA................................................................................................. 36 2 20 0.05 1 0 0 0 1 0 0 0
................................................................................................................................AAACAAAACAAACAAAAAAAAAAAAAAAAAAAAAAA....................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................AAACAAAAAAAACAAAAAAAAAAAAAAACAAAAAAA....................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAAAAAAAATAAAAAAA................................................................................... 36 2 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................AAAACAACAAAACAAAAAAAAAAAAAAAAAAAAAAA................................................................................................ 36 3 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................AAAACAAAAAAAACAAAAAAAAAAAAAAAAAAAAAA........................................................................................ 36 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................AAAACAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................. 36 2 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAA.................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................AAAAAAAAAAAAACAAAAAAAACAAAAACAAAAAAA................................................................................................. 36 3 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAAAAAAAAAGACAAAATAAAAAAAA.................................................................................. 36 3 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................AAAAAACAAAAAAAAAAAAAAAAAAAAATAAACAAA................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAAAAAAAAAAAAACACAAAAACA................................................................................... 36 3 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................AAAAAAAAACAAAACAAAAAAAAGAAAAAAAAAAAA.................................................................................................. 36 3 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................ACAAAAAAAACAAAAAAAAAAAAAAAAAAACAAAAA..................................................................................... 36 2 20 0.05 1 0 0 0 1 0 0 0
......................................................................................................................AAAAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAA................................................................................................. 36 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................AAACAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA............................................................................................ 36 2 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................AAAAAAAACAAAAAACAAAAAAACAAAAAAAAAAAA................................................................................... 36 3 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................AAAAAAAAAACAAAAAATAAAAAAACAAAAAAAAAA..................................................................................... 36 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

GGCATGTAGGCTTGTGGACATGTGGACATGTGAGTATGTGGACATGTGTGCGGACACAACAACACAAGGGAAAAACCGACGGTAGAAGTTTTAAGCAGGTATTTAGTTGATTTTAGCATTTGTTTTGTTTTGTTTTTTTTGTTTTTTTTTTTTTTGTTTTATTTTTGTTTGCGTTAGCTTGTTAACTTGTTTTTAGTTGTCAGATTTCCTTATGCCACAGCGGAGTTTATCTATGTGGATGACGGTTTTCA
**************************************************.....(((((...(((((....(((((.(((..........................................................................................))).))))).....))))).....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V058
head
 V052
head
.........................................................................................................................................................TTGTTTTATCTTGGTTTGC............................................................................... 19 2 20 15.80 316 306 7 3
.....................................................................................................................................................................................................................................TCTATGGGGATGACGGT..... 17 1 2 2.00 4 0 4 0
.................................................................................................................................................................................................................................TGTCTCTATGGGGATGACGGT..... 21 3 1 1.00 1 0 0 1
.........................................................................................................................................................TTGTTTTATCTTGGTTTGCA.............................................................................. 20 3 20 0.90 18 18 0 0
.......................................................................................................TAGTTTATTTTAGCAATTGTT............................................................................................................................... 21 2 2 0.50 1 1 0 0
....................................................................................................................................................TTTGGTTGTTTTATCTTTGTTTGC............................................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................................................................TTTGTTTGTTTTATCTTGGTTTGC............................................................................... 24 3 5 0.40 2 0 1 1
....................................................................................................................................................................................................................................CTCTATGGGGATGACGGT..... 18 2 3 0.33 1 0 1 0
.................................................................................................................................................................................................TAGTTGTCAGAGTTCGTTA....................................... 19 2 3 0.33 1 0 1 0
................................................................CAACGGCAAAACCGATGGTAGA..................................................................................................................................................................... 22 3 4 0.25 1 1 0 0
................................................................................................................................................................................................................................CTTTTTCTATGTGGGTGACGGT..... 22 3 4 0.25 1 0 1 0
.....................................................................................................................................................................................................................................TCTATGGGGATGGCGGT..... 17 2 13 0.23 3 0 3 0
.........................................................................................................................................................TTGTTTTATCTTGGTTTGCAT............................................................................. 21 3 20 0.15 3 3 0 0
.....................................................................................................................................................TTGTTTGTTTTATCTTGGTTTGC............................................................................... 23 3 8 0.13 1 0 1 0
.....................................................................................................................................................................................................................................TCTAAGGGGATGACGGT..... 17 2 16 0.13 2 0 2 0
........................................................................................................................................................GTTGTTTTATCTTTGTTTGC............................................................................... 20 2 9 0.11 1 1 0 0
.................................................................................................................................................TTTTTTTTTTGTTTTATTTTT..................................................................................... 21 0 9 0.11 1 1 0 0
.....................................................................................................................................................................................................................................TCTATTGGGATGACGGT..... 17 2 13 0.08 1 0 1 0
......................................................................................................................................................TGGTTGTTTTATCTTTGTTTGC............................................................................... 22 3 13 0.08 1 1 0 0
......................................................................................................................................................TGGTTGTTTTATTTTGGTTTGC............................................................................... 22 3 14 0.07 1 1 0 0
......................................................................................................................................................TGTTTGTTTTATCTTGGTTTGC............................................................................... 22 3 17 0.06 1 0 1 0
.....................................................................................................................................................................................................................................TCTATGGGGGTGACGGT..... 17 2 20 0.05 1 0 1 0
.....................................................................................................................................................TTTGTTGTTTTATCTTGGTTTG................................................................................ 22 3 20 0.05 1 0 1 0
.........................................................................................................................................................TTGTTTTATCTTTGTTTGCAG............................................................................. 21 3 20 0.05 1 1 0 0
........................................................................................................................................................TTTGTTTTATCTTGGTTTGC............................................................................... 20 2 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 X:18159963-18160213 - dya_1468 CCGT-A-CATCCGAACACCTGTACACCTGTA-CACTC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATCAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAAACAAAACAAAAAAAACAAAAAAAAAAAAAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TTG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droEre2 scaffold_4690:5549207-5549429 + CCGT-A-CATCCGAACACTTGTACACCTGTA-CACCC-----------------------------------ATACACCTG--TAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATCAAATAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAAA--------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AA---------------------------CAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droSec2 scaffold_15:332565-332771 - CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGTCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGCCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA----------------------------AA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AA---------------------------CAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droSim2 x:9114386-9114601 - dsi_9104 CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGCCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA---------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
dm3 chrX:9568908-9569123 - TCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA---------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droEug1 scf7180000409032:352685-352900 + CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------AAAAA--------------------------AAA-------CAA-ACAATATA--------------AACGCAAT-----CG----------------------------------------------------------AACAA----CCAAA----AA--------TC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droBia1 scf7180000301760:5559331-5559565 - CCGA-A-CACCCGAACAC--------CTGTA-CACCC-----------------------------------ATACACCTGTACAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTC-C---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AC---------------CAATCAACTAAAATCG--------------------------------------------------------------------------------------------AAAA------------------------------------------AAACAAAAA-CAAAACCTAAAAACTATA--AAACA-AACGCAAT-----CG----------------------------------------------------------AACCA----CCA----AAA---------AC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droTak1 scf7180000415872:203511-203752 - CCGT-A-CATCCGAACAC--------CTGTA-CACCC----------------GAATACCT-GAACACCCATATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---CTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT-------------------CAACTAAAATCG--------------------------------------------------------------------------------------------TAAA----AAATAAACCAAA--------------------------AAA-------C-----AAAATA-----T--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----CAAAAAAAA---------AAC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droEle1 scf7180000491013:397538-397773 - CCGA-A---------CAC--------CTGTA-CACCC-----------------------------------ATACACCTG----T--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCCCTTTTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCGAA-----------------TAAAA-----------------------------------------------------------------------------------CAAAA--------------------------AAA-------C-----AAAATA-----A--AAACAAAACGCATTGAAAACG----------------------------------------------------------AACTA----CCAAAAAAA--ACCAACAAAC--AAAACATCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droRho1 scf7180000780080:516403-516631 + CCGA-A---------CAC--------CTGTA-CACCC-----------------------------------ATACACCTG----T--------------CTGTACACACGCCTGT------GTTGTTA----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCAAA-----------------TCAAA-----------------------------------------------------------------------------------CC-----------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCATTGAAAACG----------------------------------------------------------AACAA----CCAAA----AAACCACCAAACAAAACACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droFic1 scf7180000454073:2500465-2500692 - CCGT-A-CATCCGAACACCTGTACACCTGAA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCGAAA-----TTTCGTCC----AT-------------------CAACTAAA----------------------------------------------------------------------------------------------------------------------------------------------AAA-------C-----AAAATA-----CAAAAATAAAACGCATTGCAAACG----------------------------------------------------------AATTA----CGAAA----AATCAACCATACAAAAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACATACTGCCAAAAGT
droKik1 scf7180000302592:712514-712798 + CACG-A-CACACACTCAACCAA----CCATATCTCCC-----------------------------------AAA--------AA----------------CACACACACGCCTGG------CC---TG----------------TGCTCCC----TTTTGGCTGCCATCTTCA-AA-----TATTGTCCACACATCTCATTTCTGGCCATCAAT---CTAAAAACGAAAACAAAAATCACAAA--TCAA------AACGCAAAAACCAAACAATTAAATAATT-------------------------------------------------------AAAAAAACAAAACAAAAAAAA---------------------------------------A-AACAA---------AAAACAATC-------AAAATAATTA---------------------------------AACAA----AT----------------------GAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGT
droAna3 scaffold_13248:1375403-1375670 - dan_1515 AAAA-A-AATCAAAAAAAAAACACACCTGAA-AACAC-------------------------TATTTTTTACACA--------CAC--------------CTGTACACATGCCTGT------GTTGTTG----------------T--TA------CTTTGGTTGCCAAA-----------------------------------------AAATCAACTCAA------------AAACATAAAAAT----------CCACAAACACTAAACAATTATCCAAAA-------------------------------------------------------AAAAACATAAAAAACAAACAA---------------------------------------A-AACGC---------GAACAAATC-------AAAACATAAAAACATAA---------------------ATTCGAAATA-----------------------AAAAAAAACAACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACCTACTGCCAAAAGT
droBip1 scf7180000396571:231195-231444 + AAAAAA---------CAC--------CTGAA-AAACA------------------------CTACTA-----CTA--------CAC--------------CTGTACACATGCCTGT------GTTGTTG----------------T--TA------CTTTGGTTGCCAAATTA--------------TCC----A--------------------------------------------------------------------------------------AAACAAAACACACACAAAACAAACACAACAAACATTCAA------------------------CAAAAAAAAAACAACTAA----A--------------------------------A-AACGC---------GAACAAATCAACAATTAAAATATCAAAACATAA---------------------ATTCGAAATAAAAAAT----------------------GAACAACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACCTACTGCCAAAAGT
dp5 XL_group3a:794091-794322 - CTGC-AACCTGCCAACAC--------TTGAC-AACA-------------------------CTACTCGCC--ACATGCCTG----C--------------TCGTTCATTCGTTCGTTCGTTCGTTGTTG----------------T--T--C---TTTTTGGCTGCCATCTTCA-AAAACTCTCTCGTAC----ATCGCA----------------------------------------------TCCAACAACAAAA-------CTAAAT--CT----------------------------------------TCGTAAA-----------CAAA---------------------------------------------------------------AACGT---------A----------------------------------------------------------AAC--------AAAAAAA--ACCA--AAACAAAA---ACCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTTCTGCCAAAAGT
droPer2 scaffold_15:2103152-2103379 + CTGC-AACCTGCCAACAC--------TTGAC-AACA-------------------------CTACTCGCC--ACTTGCC----TGC--------------TCGTTCATTCGTTCGT----TCGTTGTTG----------------T--T--C---TTTTTGGCTGCCATCTTCA-AAAACTCTCTCGTAC----ATCGCA----------------------------------------------TCCAACAACAAAA-------CTAAAT--CT----------------------------------------TCGTAAA-----------CAAA---------------------------------------------------------------AACGT---------G----------------------------------------------------------AACA--------AAAAAA--ACCA--AAACAAAA---ACCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTTCTGCCAAAAGT
droWil2 scf2_1100000004909:3429715-3429918 + ACAC-C-----AACACAC--------ACACA-CACAC-----------------------------------TCA--------CAC--------------TTATTCACATTTTA--------AT--TTA----------------TGTTTTT---CATTGGAAAATCATCATCA-AC-----CAAAATCC----AT---------------CAAT-----------------------------------A---------------CAAA-----A----------------------------------------TCACACA-----------CAAA---------------------------AA----------------------------------AATAAACTGAAAAAA----AAAC---AAAAAAAATATATA--------------------------------------------------------------AATATATACACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACGTTCTGCCAAAAGT
droVir3 scaffold_10324:95797-95992 + ACAT-A-CATTTGTACACACATACATATGTA-CATACATACATATGTACATACATATATAT-GTACATAC--ATA--------CAT--------------ATGTACATAC--------------------------------------------------------------------ATACATATGTAC----AT---A----------------------------------------------TATACATACATAT-------GTAAATATTTACATATAT-----------------AAATATAT---GT--G--TACA-----------CACGTTAATACAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AA---AACAACAAAAAAAAACAACATGTGAACATACATA---------------------
droMoj3 scaffold_6473:16092164-16092274 - GA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTTTCT-GA-----TTCAGTCT----TT---------------TGATTGGTAAAAAGAA----------------------------------------------------------------------------------------------------CCGCCAACAAAA--------------------------AAAAAAAAAAAAA-AAAAAAAA--------------AATGT--------------------------------------------------------------------GAAAA----GTGGTTAGAA---------AC--AAGGGAACAGTTGA----------------------------------------------
droGri2 scaffold_14853:5680957-5681184 - GTAT-G-TAT--GTATGTATGTATGTATGTA-CACAC-----------------------------------ATA--------CGTATAGTATAACTCTATTGTATATGGAATTGT------CTTGTTGCAATTGACAAGGCAACTGTTCAG---TTTTTGGCACAG--TTTAA-CG-----GAACATAC----AT------------------------------------------------------------------------------------------------------------------------TTGCAAAAAAAACATCAACAAA----------------------------AA-------A-----AAAAAA-----G--AAACA-AAA---------------------------AAAATACAAAAATATATATATAATCACCACAGGGAGAGACGCAA--------------------------------------------------------------------------AGTAAACAGTAAACAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CCGT-A-CATCCGAACACCTGTACACCTGTA-CACTC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATCAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAAACAAAACAAAAAAAACAAAAAAAAAAAAAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TTG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAATACGGTGTCGCCTCAAAT......................25112.0012000000000012
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGTCGCC............................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGTCTAAAGGAATACGGTGTC...............................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGTCGCCTC..........................2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCTAAAGGAATACGGTGTCGCCTCA.........................2911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................AAACAAAAAAAACAAAAAAAAA...........................................................................................................................................................................................................2270.14100100000000
.........................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAAAAAAAAAAAAA-------...............................................................................................................................................................................................23160.06101000000000
.........................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAAAAAAAAAAAA.......................................................................................................................................................................................................22200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................AAAAAACAAAAAAAAAAAA........................................................................................................................................................................................................19200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAAAAAAAAAAA........................................................................................................................................................................................................21200.05101000000000
droEre2
CCGT-A-CATCCGAACACTTGTACACCTGTA-CACCC-----------------------------------ATACACCTG--TAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATCAAATAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAAA--------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AA---------------------------CAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGTCGCCTCAAATAG....................1911.0010000010
droSec2
CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGTCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGCCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA----------------------------AA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AA---------------------------CAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCTAAAGGAATACGGTGTC...............................2411.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATACGGTGTCGCC............................2011.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGGAATACGGTGTCGCCT...........................2211.0010010
droSim2
CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGCCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA---------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCTAAAGGAAT.......................................1611.00100000010000000000
.............................................................................................................CGCCTGT------GTTGTTG----------------TGTTCCC---...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................T------GTTGTTG----------------TGTTCCC---TTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
dm3
TCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----ATTCGTCC----AT---------------AAATGAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------CAAA---------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATCAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAAAGGAATACGGTGTCGCCTC..........................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATACGGTGTCGCCTCAAATAGA...................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATACGGTGTCGCCTCA.........................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCTAAAGGAATACGGTGTCGC.............................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAATACGGTGTCGCCTCAAAT......................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATACGGTGTCGCCTC..........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAAAGGAATACGGTGTCGCCT...........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATACGGTGTCGCCTCAAA.......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATACGGTGTCGCCTCAAA.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGTCGCCTCAAATAG....................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................A-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAA............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACGGTGTCGCCTCAA........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGATACACCTACTGCCAAAAG.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATACGGTGTCGCCTCAAATA.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TA-----A--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----A-----------................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AT-----CG----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATC.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACAGTCTAAAGGAATA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGTCGCCTCAAATAGAT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATACGGTGTCGCCTC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACGGTGTCGCCTCAAATAGATA.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................CATCTTCA-AA-----ATTCGTCC----AT---------------A..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGGAATACGGTGTCGC.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------AACAA----TCG----A-----------ACAAAAATCAACAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAAAGGAATACGGT..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAGGAATACGGTGTCGCCTCA.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTG----------------TGTTCCC---TTTTTGGCTGCCATCT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAAAGGAATACGGTGTCGCCTCA.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AACA-AACGCAAT-----CG----------------------------------------------------------AACAA----TCG----............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGT................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATACGGTGTCGCCTCAAATAGAT..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCTAAAGGAATACGGTGT................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GTTGTTG----------------TGTTCCC---TTTTTGGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTGTCGCCTCAAATAGA...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.CGT-A-CATCCGAACAC--------CTGTA-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGTGTCGCCTCAAA.......................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTGTCGCCTCAAATAG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAGGAATACGGTGTCGCCT...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTAAAGGAATACGGTGTCGCCTCA.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGTCGCCTCAAATAGA...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTGTCGCCTCAAAT......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCTAAAGGAATACGGTGT................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEug1
CCGT-A-CATCCGAACAC--------CTGTA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCG--------------------------------------------------------------------------------------------TAAA-----------AAAAA--------------------------AAA-------CAA-ACAATATA--------------AACGCAAT-----CG----------------------------------------------------------AACAA----CCAAA----AA--------TC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
CCGA-A-CACCCGAACAC--------CTGTA-CACCC-----------------------------------ATACACCTGTACAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTC-C---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AC---------------CAATCAACTAAAATCG--------------------------------------------------------------------------------------------AAAA------------------------------------------AAACAAAAA-CAAAACCTAAAAACTATA--AAACA-AACGCAAT-----CG----------------------------------------------------------AACCA----CCA----AAA---------AC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droTak1
CCGT-A-CATCCGAACAC--------CTGTA-CACCC----------------GAATACCT-GAACACCCATATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---CTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT-------------------CAACTAAAATCG--------------------------------------------------------------------------------------------TAAA----AAATAAACCAAA--------------------------AAA-------C-----AAAATA-----T--AAACA-AACGCAAT-----CG----------------------------------------------------------AACAA----CAAAAAAAA---------AAC--AAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
CCGA-A---------CAC--------CTGTA-CACCC-----------------------------------ATACACCTG----T--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCCCTTTTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCGAA-----------------TAAAA-----------------------------------------------------------------------------------CAAAA--------------------------AAA-------C-----AAAATA-----A--AAACAAAACGCATTGAAAACG----------------------------------------------------------AACTA----CCAAAAAAA--ACCAACAAAC--AAAACATCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droRho1
CCGA-A---------CAC--------CTGTA-CACCC-----------------------------------ATACACCTG----T--------------CTGTACACACGCCTGT------GTTGTTA----------------TGTTCCC---TTTTTGGCTGCCATCTTCA-AA-----TTTCGTCC----AT---------------CAATCAACTAAAATCAAA-----------------TCAAA-----------------------------------------------------------------------------------CC-----------------------------AAA-------C-----AAAATA-----A--AAACA-AACGCATTGAAAACG----------------------------------------------------------AACAA----CCAAA----AAACCACCAAACAAAACACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
CCGT-A-CATCCGAACACCTGTACACCTGAA-CACCC-----------------------------------ATA--------CAC--------------CTGTACACACGCCTGT------GTTGTTG----------------TGTTCCC---TTTTTGGCTGCCATCTTCGAAA-----TTTCGTCC----AT-------------------CAACTAAA----------------------------------------------------------------------------------------------------------------------------------------------AAA-------C-----AAAATA-----CAAAAATAAAACGCATTGCAAACG----------------------------------------------------------AATTA----CGAAA----AATCAACCATACAAAAAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACATACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droKik1
CACG-A-CACACACTCAACCAA----CCATATCTCCC-----------------------------------AAA--------AA----------------CACACACACGCCTGG------CC---TG----------------TGCTCCC----TTTTGGCTGCCATCTTCA-AA-----TATTGTCCACACATCTCATTTCTGGCCATCAAT---CTAAAAACGAAAACAAAAATCACAAA--TCAA------AACGCAAAAACCAAACAATTAAATAATT-------------------------------------------------------AAAAAAACAAAACAAAAAAAA---------------------------------------A-AACAA---------AAAACAATC-------AAAATAATTA---------------------------------AACAA----AT----------------------GAACAACAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
droAna3
AAAA-A-AATCAAAAAAAAAACACACCTGAA-AACAC-------------------------TATTTTTTACACA--------CAC--------------CTGTACACATGCCTGT------GTTGTTG----------------T--TA------CTTTGGTTGCCAAA-----------------------------------------AAATCAACTCAA------------AAACATAAAAAT----------CCACAAACACTAAACAATTATCCAAAA-------------------------------------------------------AAAAACATAAAAAACAAACAA---------------------------------------A-AACGC---------GAACAAATC-------AAAACATAAAAACATAA---------------------ATTCGAAATA-----------------------AAAAAAAACAACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGGAATACGGTGTTGCC............................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCAAATAGATACACCTACTGCC......2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTCAAATAGATACACCTAC..........2411.001010000
.AAA-A-AATCAAAAAAAAAACACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201010000
droBip1
AAAAAA---------CAC--------CTGAA-AAACA------------------------CTACTA-----CTA--------CAC--------------CTGTACACATGCCTGT------GTTGTTG----------------T--TA------CTTTGGTTGCCAAATTA--------------TCC----A--------------------------------------------------------------------------------------AAACAAAACACACACAAAACAAACACAACAAACATTCAA------------------------CAAAAAAAAAACAACTAA----A--------------------------------A-AACGC---------GAACAAATCAACAATTAAAATATCAAAACATAA---------------------ATTCGAAATAAAAAAT----------------------GAACAACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACCTACTGCCAAAAGTSizeHit CountTotal NormTotal
No Reads
dp5
CTGC-AACCTGCCAACAC--------TTGAC-AACA-------------------------CTACTCGCC--ACATGCCTG----C--------------TCGTTCATTCGTTCGTTCGTTCGTTGTTG----------------T--T--C---TTTTTGGCTGCCATCTTCA-AAAACTCTCTCGTAC----ATCGCA----------------------------------------------TCCAACAACAAAA-------CTAAAT--CT----------------------------------------TCGTAAA-----------CAAA---------------------------------------------------------------AACGT---------A----------------------------------------------------------AAC--------AAAAAAA--ACCA--AAACAAAA---ACCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTTCTGCCAAAAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTCAAATAGATACACCTTCT.........2511.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAATACGGTGTCGCC............................2011.0010100000000
...................................A-------------------------CTACTCGCC--ACATGCCTG----C--------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CTGC-AACCTGCCAACAC--------TTGAC-AACA-------------------------CTACTCGCC--ACTTGCC----TGC--------------TCGTTCATTCGTTCGT----TCGTTGTTG----------------T--T--C---TTTTTGGCTGCCATCTTCA-AAAACTCTCTCGTAC----ATCGCA----------------------------------------------TCCAACAACAAAA-------CTAAAT--CT----------------------------------------TCGTAAA-----------CAAA---------------------------------------------------------------AACGT---------G----------------------------------------------------------AACA--------AAAAAA--ACCA--AAACAAAA---ACCAGTCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTTCTGCCAAAAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ACAC-C-----AACACAC--------ACACA-CACAC-----------------------------------TCA--------CAC--------------TTATTCACATTTTA--------AT--TTA----------------TGTTTTT---CATTGGAAAATCATCATCA-AC-----CAAAATCC----AT---------------CAAT-----------------------------------A---------------CAAA-----A----------------------------------------TCACACA-----------CAAA---------------------------AA----------------------------------AATAAACTGAAAAAA----AAAC---AAAAAAAATATATA--------------------------------------------------------------AATATATACACAGTCTAAAGGAATACGGTGTTGCCTCAAATAGATACACGTTCTGCCAAAAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAAAGGAATACGGTGTTG..............................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAAAGGAATACGGTGTTGCCTCAA........................2711.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATACACGTTCTGCCAAAA..2211.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAAA----AAAC---AAAAAG.....................................................................................................................................19200.05100010
droVir3
ACAT-A-CATTTGTACACACATACATATGTA-CATACATACATATGTACATACATATATAT-GTACATAC--ATA--------CAT--------------ATGTACATAC--------------------------------------------------------------------ATACATATGTAC----AT---A----------------------------------------------TATACATACATAT-------GTAAATATTTACATATAT-----------------AAATATAT---GT--G--TACA-----------CACGTTAATACAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AA---AACAACAAAAAAAAACAACATGTGAACATACATA---------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTTTCT-GA-----TTCAGTCT----TT---------------TGATTGGTAAAAAGAA----------------------------------------------------------------------------------------------------CCGCCAACAAAA--------------------------AAAAAAAAAAAAA-AAAAAAAA--------------AATGT--------------------------------------------------------------------GAAAA----GTGGTTAGAA---------AC--AAGGGAACAGTTGA----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTAT-G-TAT--GTATGTATGTATGTATGTA-CACAC-----------------------------------ATA--------CGTATAGTATAACTCTATTGTATATGGAATTGT------CTTGTTGCAATTGACAAGGCAACTGTTCAG---TTTTTGGCACAG--TTTAA-CG-----GAACATAC----AT------------------------------------------------------------------------------------------------------------------------TTGCAAAAAAAACATCAACAAA----------------------------AA-------A-----AAAAAA-----G--AAACA-AAA---------------------------AAAATACAAAAATATATATATAATCACCACAGGGAGAGACGCAA--------------------------------------------------------------------------AGTAAACAGTAAACAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGGGAGAGACGCAA--------------------------------------------------------------------------AGTA.............2211.00110
..............................................................................................................................................................TTGGCACAG--TTTAA-CG-----GAA.............................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 12:58 AM