ID:

dya_145

 Coordinate:

2R:230081-230165 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.3 -33.0 -32.9 -32.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 3L:23657791-23657813 -
  2. dya_145  2R:230081-230103 +
  3. v2_chrUn_4206:125537-125559 -
  4. v2_chrUn_534:89862-89884 +
  5. v2_chrUn_554:78667-78689 -
star

Sense Strand Reads

AGCCAGCGGGAGCCCCAAGCCGTGGGAAGCCGGACACGTGGACGAAGGCGGAGACTAGGAAGAAGGCACGCCTATCGCGGAGACCCGACGCTGTTATAGTCGAAGCGAAGGGAAAACCTACAGCGAGGTCTTCGCTTTGGTCACCAGGCGAAGCGACGGACAACTGCAGGAGTTAGAGAGGAACG
***********************************....((.....((((((((((.......(((....(((.((((...(((..(((...)))...)))...)))).)))....))).......))))))))))))*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 V120
male body		 M056
embryo
 V052
head
............................................................................................................................................................CGGACAACTGCAGGAGTTAGAGA...... 23 0 1 3.00 3 3 0 0 0 0
..................................................GAGACTAGGAAGAAGGCACGCCT................................................................................................................ 23 0 5 2.00 10 8 0 0 2 0
..............................................................................................................................................................GACAACTGCAGGAGTTAGCGA...... 21 1 1 1.00 1 0 0 0 0 1
...................................................................................................TCGAAGCGAAGGGAAAACCTACAG.............................................................. 24 0 1 1.00 1 0 0 1 0 0
..................................................GAGACTAGGAAGAAGGCACGCCTAT.............................................................................................................. 25 0 2 1.00 2 0 0 2 0 0
........................................................................................................GCGAAGGGAAAACCTACAGCGAGGTC....................................................... 26 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................GCGACGGACAACTGCAGGAGTTAGA........ 25 0 1 1.00 1 1 0 0 0 0
..................................................GAGACTAGGAAGAAGGCACGCC................................................................................................................. 22 0 5 0.80 4 1 0 0 3 0
........................................................................TATCGCGGAGACCCGACGCTGTTATAA...................................................................................... 27 1 5 0.80 4 0 4 0 0 0
..................................................GAGACTAGGAAGAAGGCACGCCTA............................................................................................................... 24 0 5 0.80 4 3 0 1 0 0
..................................................GAGACTAGGAAGAAGGCACGC.................................................................................................................. 21 0 5 0.60 3 3 0 0 0 0
....................................................GACTAGGAAGAAGGCACGCCTAT.............................................................................................................. 23 0 2 0.50 1 0 1 0 0 0
....................................................GACTAGGGAGAAGGCACGCCTAT.............................................................................................................. 23 1 2 0.50 1 0 1 0 0 0
..................................................GAGACTAGGAAGAAGGCACGCCTATC............................................................................................................. 26 0 2 0.50 1 0 0 1 0 0
..................................................GAGACTAGGAAGAAGGCACGCCTATCG............................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
...................................................AGACTAGGAAGAAGGCACGCCTAT.............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................ACAACTGCAGGAGTTTGAGAGGAA.. 24 1 2 0.50 1 1 0 0 0 0
............................................................................................................................................................CGGACAACTGCAGGAGTTTGAGT...... 23 2 2 0.50 1 1 0 0 0 0
........................................................................TATCGAGGAGACCCGACGCTGTTATAA...................................................................................... 27 2 5 0.40 2 0 2 0 0 0
.....................................................ACTAGGAAGAAGGCACGCCTATCGC........................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................TTTGGTCATCAGGCGAAGCGACGGA......................... 25 1 9 0.33 3 0 3 0 0 0
...............................................................................GAGACCCGACGCTGTTATAGTCGAAG................................................................................ 26 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................TTGGTCACCAGGCGAAGCGACGGACAAC..................... 28 0 9 0.22 2 0 2 0 0 0
.....GCGGGAGTCCCAAGCCGTGGGAAGC........................................................................................................................................................... 25 1 5 0.20 1 0 0 0 1 0
..................................................TAGACTAGGAAGAAGGCACGCCTA............................................................................................................... 24 1 5 0.20 1 1 0 0 0 0
........................................................................TATCGCGGAGACCAGACGCTGTTATAA...................................................................................... 27 2 5 0.20 1 0 1 0 0 0
......................TGGGAAGCCGGACACGTGGACGAAGG......................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0
..................................................GAGACTATGAAGAAGGCACGCCT................................................................................................................ 23 1 5 0.20 1 1 0 0 0 0
..........................................................................TCGCGGAGACCCGACGCTGTTATA....................................................................................... 24 0 5 0.20 1 1 0 0 0 0
...................................................................ACGCCTATCGCGGAGACCCGACGC.............................................................................................. 24 0 6 0.17 1 1 0 0 0 0
...............................................................................GAGACCCGACGCTGTTATAGCCGAAG................................................................................ 26 1 6 0.17 1 1 0 0 0 0
............TCCCAAGCCGTGGGAAGCCGGACACG................................................................................................................................................... 26 1 7 0.14 1 0 0 1 0 0
......................TCGGAAGCCGGACACGTGGACGAAGG......................................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0
..................................................................................................................................................GGCGAAGCGACGGACAACTGCAGG............... 24 0 8 0.13 1 1 0 0 0 0
.......................................................................................................................................................AGCGACGGACAACTGCAGGAGTT........... 23 0 8 0.13 1 1 0 0 0 0
....................................CGTGGACGAAGGCGGAGACA................................................................................................................................. 20 1 8 0.13 1 1 0 0 0 0
..................................................................................................................................................GGCGAAGCGACGGACAACTGCAGGA.............. 25 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................ACCAGGCGAAGCGACGGAC........................ 19 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................................TTTGGTCATCAGGCGACGCGACGGA......................... 25 2 9 0.11 1 0 1 0 0 0
..................................................GAGACAAGTAAGAAGGCTCGCCT................................................................................................................ 23 3 9 0.11 1 0 0 0 1 0
..............................................................................................................................................ACCAGGCGAAGCGACGGACAACTGC.................. 25 0 9 0.11 1 0 0 0 1 0
.............................................................................................................................................CACCAGGCGAAGCGACGGACAACTG................... 25 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................................TTTGGTCATCAGGGGAAGCGACGGA......................... 25 2 9 0.11 1 0 1 0 0 0
........................................................................................................................................TTGGTCACCAGGCGAAGCGACGGAC........................ 25 0 9 0.11 1 1 0 0 0 0
............................................................................................................................................TCACCAGGCGAAGCGACGGACAACTGCA................. 28 0 9 0.11 1 1 0 0 0 0
.........................................................................................................................................TGGTCACCAGGCGAAGCGACGGAC........................ 24 0 9 0.11 1 0 0 1 0 0
.........................................................................................................................................TGGTCACCAGGCGAAGCGACGGACT....................... 25 1 9 0.11 1 0 0 0 1 0
..............................................................................................................................................ACCAGGCGAAGCGACGGACAAC..................... 22 0 9 0.11 1 0 0 1 0 0
.......................................................................................................................................TTTGGTCATAAGGCGAAGCGACGGA......................... 25 2 9 0.11 1 0 1 0 0 0
............................................................................................................................................TCACCAGGCGAAGCGACGGACAAC..................... 24 0 9 0.11 1 1 0 0 0 0
..............................................................................................................................................ACCAGGCGAAGCGACGGACAACT.................... 23 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................................TTTGGTCACCAGGCGAAGCGACGG.......................... 24 0 10 0.10 1 0 1 0 0 0
.......................................................................................................................................TTTGGTCACCAGGCGACGCGACGG.......................... 24 1 10 0.10 1 0 1 0 0 0
.......................................................................................................................................TTTGGTCACCAGGGGAAGCGACGG.......................... 24 1 10 0.10 1 0 1 0 0 0
........................................................................................................................................TTGGTCACCAGGCGAAGCGA............................. 20 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................TTGGTCACCAGGCGAAGCGACG........................... 22 0 10 0.10 1 1 0 0 0 0

Anti-sense strand reads

TCGGTCGCCCTCGGGGTTCGGCACCCTTCGGCCTGTGCACCTGCTTCCGCCTCTGATCCTTCTTCCGTGCGGATAGCGCCTCTGGGCTGCGACAATATCAGCTTCGCTTCCCTTTTGGATGTCGCTCCAGAAGCGAAACCAGTGGTCCGCTTCGCTGCCTGTTGACGTCCTCAATCTCTCCTTGC
***********************************************....((.....((((((((((.......(((....(((.((((...(((..(((...)))...)))...)))).)))....))).......))))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V046
embryo
 M026
head
 V052
head
..................................GTGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 26 0 8 19.50 156 149 0 1 1 0 4 1
.......................................................................................TGCGACAATATCAGCTTCGCTTCCCT........................................................................ 26 0 4 13.75 55 19 36 0 0 0 0 0
...........CGGGGTTCGGCACCCTTCGGCCTGT..................................................................................................................................................... 25 0 2 8.50 17 0 16 1 0 0 0 0
............................................................................................................................................AGTGGTCCGCTTCGCTGCCTGTTGAC................... 26 0 9 8.11 73 1 72 0 0 0 0 0
......................................................................................CTGCGACAATATCAGCTTCGCTTCCCT........................................................................ 27 0 4 6.50 26 13 12 1 0 0 0 0
...........CGGGGTTCGGCACCCTTCGGCCT....................................................................................................................................................... 23 0 2 5.00 10 0 9 1 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGACGT................. 25 0 9 4.67 42 11 30 1 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTTGAC................... 25 0 9 4.33 39 37 0 0 2 0 0 0
.................................TGTGCACCTGCTTCCGCCTCTGATCCTT............................................................................................................................ 28 0 8 3.50 28 0 28 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTTGACGT................. 27 0 9 3.44 31 0 31 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCCTGTTG..................... 26 0 9 3.33 30 0 30 0 0 0 0 0
..............................................................................................................................................TGGTCCGCTTCGCTGCCTGTTGAC................... 24 0 9 3.11 28 27 0 1 0 0 0 0
....................................GCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 24 0 8 3.00 24 22 0 2 0 0 0 0
.CGGTCGCCCTCGGGGTTCGGCACCCTT............................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................AGCGACAATATCAGCTTCGCTTCCCT........................................................................ 26 1 4 2.50 10 0 10 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGAC................... 23 0 9 2.44 22 21 0 1 0 0 0 0
...................................................................................GGGCTGCGACAATATCAGCTTCGCTT............................................................................ 26 0 4 2.25 9 1 7 0 1 0 0 0
...................................TGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 25 0 8 2.13 17 13 0 1 1 2 0 0
.......................................................................................TGCGACAATCTCAGCTTCGCTTCCCT........................................................................ 26 1 4 1.50 6 0 6 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCGCTGATCCT............................................................................................................................. 26 1 8 1.50 12 12 0 0 0 0 0 0
................................CTGTGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 28 0 6 1.50 9 9 0 0 0 0 0 0
......................................................................................ATGCGACAATATCAGCTTCGCTTCCCTT....................................................................... 28 1 4 1.50 6 0 6 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 25 0 8 1.50 12 12 0 0 0 0 0 0
......................................................................................CTGCGACAATATCAGCTTCGCTTCCCTT....................................................................... 28 0 4 1.25 5 1 0 4 0 0 0 0
........................................................................................GCGACAATATCAGCTTCGCTTCCCT........................................................................ 25 0 4 1.25 5 3 0 0 0 2 0 0
.................................TGTGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 27 0 8 1.25 10 10 0 0 0 0 0 0
.......................................CCTGCTTCCGCCTCTGATCCTTCTT......................................................................................................................... 25 0 8 1.25 10 8 0 2 0 0 0 0
........................................................................................................................GTCGCTCCAGAAGCGAAACCAGTGGT....................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.....CGCCCTCGGGGTTCGGCACCCTT............................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
........CCTCGGGGTTCGGCACCCTTCGGCCT....................................................................................................................................................... 26 0 2 1.00 2 1 0 1 0 0 0 0
................................................................................................................................................GTCCGCTTCGCTGCCTGTTGACGT................. 24 0 9 1.00 9 9 0 0 0 0 0 0
..GGTCGCCCTCGGGGTTCTGCACCCTT............................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................GTCCGCTTCGCTGCCTGTTGAC................... 22 0 9 0.89 8 8 0 0 0 0 0 0
......................................................................GGATAGCGCCTCTGGGCTGCGACAAT......................................................................................... 26 0 5 0.80 4 0 4 0 0 0 0 0
....................................GCACCTGCTTCCGCCTCT................................................................................................................................... 18 0 10 0.70 7 1 6 0 0 0 0 0
......................................ACCTGCTTCCGTCTCTGATCCT............................................................................................................................. 22 1 8 0.63 5 0 5 0 0 0 0 0
...................................................................................GGGCTGCGCCAATATCAGCTTCGCTT............................................................................ 26 1 5 0.60 3 0 3 0 0 0 0 0
........................................................................................GCGACAATATCAGCTTCGCTTCCCTT....................................................................... 26 0 4 0.50 2 2 0 0 0 0 0 0
...........CGGGGTTCGGCGCCCTTTGGCCTGT..................................................................................................................................................... 25 2 2 0.50 1 0 1 0 0 0 0 0
...........CGGGGGTCGGCACCCTTCGGCCT....................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0
..........TCGGGGTTCGGCACCCTCCGGCCTGT..................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................TGCGACCATATCAGCTTCGCTTCCCT........................................................................ 26 1 4 0.50 2 0 2 0 0 0 0 0
...GTCGCCCTCGGGGTTGGGCACCCT.............................................................................................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................TGCGACAATATCCGCTTCGCTTCCCT........................................................................ 26 1 4 0.50 2 0 2 0 0 0 0 0
.......................................................................................TGCGACAATATCAGCTTCGCTTCCCTT....................................................................... 27 0 4 0.50 2 2 0 0 0 0 0 0
...................................................................................................................................AGCGATACCAGTAGTCCG.................................... 18 2 2 0.50 1 0 0 0 1 0 0 0
......................................................................................CTGCGACAATATCAGCTTAGCTTCCCT........................................................................ 27 1 4 0.50 2 2 0 0 0 0 0 0
.CGGTCGCCCTCGGGGTTGGGCACCCT.............................................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0
...........CGGGGTTCGGCCCCCTTCGGCCT....................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................................GGGCTGCGACAATATCAGCTTCGCT............................................................................. 25 0 4 0.50 2 1 0 0 1 0 0 0
.....................................................................................................................................CGAAACCAGTGGTCCGCTTCGCTGCCT......................... 27 0 9 0.44 4 2 0 1 0 0 0 1
............................................................................................................................................TGTGGTCCGCTTCGCTGCCTGTTGAC................... 26 1 9 0.44 4 0 4 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCACTGATCCT............................................................................................................................. 26 1 8 0.38 3 3 0 0 0 0 0 0
......................................ACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 22 0 8 0.38 3 3 0 0 0 0 0 0
........................................................TCCTTCTTCCGTGCGGATAGCGCCTCT...................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
...........CGGGGTTGGGCACCCTTCGGCCTGT..................................................................................................................................................... 25 1 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................................................CAGTGGTCCGCTTCGCTGCCTGTTGAC................... 27 0 9 0.33 3 3 0 0 0 0 0 0
...........CGGGGTTGGGCGCCCTTCGGCCTGT..................................................................................................................................................... 25 2 3 0.33 1 0 1 0 0 0 0 0
.........................................................CCTTCTTCCGTGCGGATAGCGCCTCT...................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................CCTTCTTCCGTGCGGATAGCGCCTC....................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTTGA.................... 24 0 9 0.33 3 3 0 0 0 0 0 0
.................................TGTGCACCTGCTTCGGCCTCTGATCCTT............................................................................................................................ 28 1 8 0.25 2 0 2 0 0 0 0 0
.................................TGTGCACCTGCTTCCGCCGCTGATCCT............................................................................................................................. 27 1 8 0.25 2 2 0 0 0 0 0 0
..................................................................................AGGGCTGCGACAATATCAGCTTCGCTT............................................................................ 27 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................................ATGCGACAATCTCAGCTTCGCTTCCCTT....................................................................... 28 2 4 0.25 1 0 1 0 0 0 0 0
........................................................................................GCGACAATATCAGCTTCGCTTCCCTTT...................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................................................................CCGCTTCGCTGCCTGTTGACGTCCT.............. 25 0 8 0.25 2 2 0 0 0 0 0 0
.................................................................................CTGGGCTGCGACAATATCAGCTTCGCTT............................................................................ 28 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................TGCAACAATATCAGCTTCGCTTCCCT........................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCTCAGATCCT............................................................................................................................. 26 1 8 0.25 2 2 0 0 0 0 0 0
.......................................................................................TGCGACAATATCTGCTTCGCTTCCCT........................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................TGCGACAATATCAGATTCGCTTCCCT........................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
................TTCGGCACCCTTCGGCCTGTGCACC................................................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................CGACAATATCAGCTTCGCTTCCCTT....................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCTCCGATCCT............................................................................................................................. 26 1 8 0.25 2 2 0 0 0 0 0 0
.......................................................................................TGCGACAATATCAGCTTGGCTTCCCT........................................................................ 26 1 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................CGACAATATCAGCTTCGCTTCCCTTT...................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................TGCGAAAATCTCAGCTTCGCTTCCCT........................................................................ 26 2 4 0.25 1 0 1 0 0 0 0 0
.................TCGGCACCCTTCGGCCTGTGCACCT............................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................TGCGACAATATCGGCTTCGCTTCCCT........................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................TGCGAAAATATCAGCTTCGCTTCCCT........................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
......................................................................................CTGGGACAATATCAGCTTCGCTTCCCT........................................................................ 27 1 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................ACAATATCAGCTTCGCTTCCCTTT...................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................TGCGACAATATCAGCTTCGCTTCCC......................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................CTGCGACAATCTCAGCTTCGCTTCCCT........................................................................ 27 1 4 0.25 1 0 1 0 0 0 0 0
......................................................................................CTGCGAAAATATCAGCTTCGCTTCCCT........................................................................ 27 1 4 0.25 1 0 1 0 0 0 0 0
...................................................................................GGGCTGCGACAATATCAGCTTCGC.............................................................................. 24 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................GCGACAATATCAGCTTCGCTTCCGT........................................................................ 25 1 4 0.25 1 0 0 1 0 0 0 0
......................................................................................CTGCGACAATATCGGCTTCGCTTCCCT........................................................................ 27 1 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................AGCGACAATATCAGCTTCGCTTCCTT........................................................................ 26 2 4 0.25 1 1 0 0 0 0 0 0
..................................................................................TGGGCTGCGACAATATCAGCTTCGCTT............................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................ATGCGACAATATCAGCTACGCTTCCCTT....................................................................... 28 2 4 0.25 1 0 1 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCCCTGATCCT............................................................................................................................. 26 1 8 0.25 2 2 0 0 0 0 0 0
........CCTCAGGGTTCGGCACCCTTCGGCCT....................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0
...................................................................................GGGCTGCGAAAATATCAGCTTCGCTT............................................................................ 26 1 4 0.25 1 0 1 0 0 0 0 0
......................................................................................CTGCGACCATATCAGCTTCGCTTCCCT........................................................................ 27 1 4 0.25 1 0 1 0 0 0 0 0
.....................................CACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 23 0 8 0.25 2 1 0 1 0 0 0 0
....................................................................................GGCTGCGACAATATCAGCCTCGCTT............................................................................ 25 1 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCCTGTTGAC................... 28 0 9 0.22 2 2 0 0 0 0 0 0
.................................................................................................................................................TCCGCTTCGCTGCCTGTTGACGT................. 23 0 9 0.22 2 2 0 0 0 0 0 0
..............................................................................................................................................TGGTCCGCTTCGCTGCCTGTTGA.................... 23 0 9 0.22 2 2 0 0 0 0 0 0
..............................................................................................................................................TGGTCCGCTTCGCTGCCTG........................ 19 0 9 0.22 2 2 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGACTGTTGAC................... 25 1 9 0.22 2 2 0 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCCTGTT...................... 25 0 9 0.22 2 2 0 0 0 0 0 0
.................................................................................................................................................TCCGCTTCGCTGCCTGTTGAC................... 21 0 9 0.22 2 1 1 0 0 0 0 0
............................................................................................................................................AGTGGTCCGCTTCGCTGCGTGTTGAC................... 26 1 9 0.22 2 0 2 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCCTGT....................... 24 0 9 0.22 2 2 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTTGACG.................. 26 0 9 0.22 2 2 0 0 0 0 0 0
.............................................................................................................................................GTAGTCCGCTTCGCTGCCTGTTGAC................... 25 1 9 0.22 2 2 0 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGGCTGTTGAC................... 23 1 9 0.22 2 2 0 0 0 0 0 0
......GCCCTCAGGGTTCGGCACCCTTCGGC......................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................AGCGCCTCTGGGCTGCGACAATAT....................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
...............................CCTGTGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 29 0 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................GGATGTCGCTCCAGAATCGAAACCA............................................ 25 1 6 0.17 1 1 0 0 0 0 0 0
...............................CCTGTGCACCTGCTTCCGCCTCTGA................................................................................................................................. 25 0 6 0.17 1 1 0 0 0 0 0 0
...............................CCTGCGCACCTGCTTCCGCCTCTGTT................................................................................................................................ 26 2 6 0.17 1 1 0 0 0 0 0 0
..............................................CCGCCTCTGATCCTTCTTCCGT..................................................................................................................... 22 0 6 0.17 1 0 0 1 0 0 0 0
..........................................GCTTCCGCCTCAGATCCTTCTTCCGT..................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0
........................................CTGCTTCCGCCTCTGATCCTTCTTCCGT..................................................................................................................... 28 0 6 0.17 1 1 0 0 0 0 0 0
................................CTGTGCACCTGCTTCCGCCTCAGATCCT............................................................................................................................. 28 1 6 0.17 1 1 0 0 0 0 0 0
................................CTGTGCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 27 0 6 0.17 1 1 0 0 0 0 0 0
...............................CCTGTGCACCTGCTTCCGCCTCT................................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0 0
..........................................GCTTCCGCCTCTGATCCGTCTTCCGT..................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0
............................................TTCCGCCTCTGATCCATCTTCCGT..................................................................................................................... 24 1 6 0.17 1 1 0 0 0 0 0 0
................................CTGTGCACCTGCTTCCGCCGCTGATCCT............................................................................................................................. 28 1 6 0.17 1 1 0 0 0 0 0 0
...............................CCTGTGCACCTGCTTCCGCCTCTGAT................................................................................................................................ 26 0 6 0.17 1 1 0 0 0 0 0 0
...............................................................................................TATCAGCTTCGCTTCCCT........................................................................ 18 0 7 0.14 1 1 0 0 0 0 0 0
................................................................................................ATCAGCTTCGCTTCCCTT....................................................................... 18 0 7 0.14 1 1 0 0 0 0 0 0
.......................................CCTGCTTCCGCCTCTGATCCT............................................................................................................................. 21 0 8 0.13 1 1 0 0 0 0 0 0
...................................TGCACCTGCTTCCGCCTCAGATCCT............................................................................................................................. 25 1 8 0.13 1 0 0 1 0 0 0 0
.....................................CACCTGCTTCCGCCTCTGGTCCTTCTT......................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0 0 0
...................................................................................................................................................CGCTTCGCTGCCTGTTGACGTCCT.............. 24 0 8 0.13 1 1 0 0 0 0 0 0
....................................GCACCCGCTTCCGCCTCTGATCCTTCT.......................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0 0 0
......................................ACCTGCTTCCGCCTCTGATCCTTCT.......................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0 0
..................................ATGCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 25 1 8 0.13 1 1 0 0 0 0 0 0
....................................GCACCTGCTTCCGCCTCAGATCCTTCTT......................................................................................................................... 28 1 8 0.13 1 1 0 0 0 0 0 0
.................................CGTGCACCTGCTTCCGCCTCTGATCCT............................................................................................................................. 27 1 8 0.13 1 0 0 1 0 0 0 0
.................................TGTGCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0
........................................CTGCTTCCGCCTCTGATCCT............................................................................................................................. 20 0 8 0.13 1 1 0 0 0 0 0 0
..................................GTGCGCCTGCTTCCGCCTCTGATCCT............................................................................................................................. 26 1 8 0.13 1 1 0 0 0 0 0 0
...................................TGCACCTGCTTCCGCCGCTGATCCT............................................................................................................................. 25 1 8 0.13 1 1 0 0 0 0 0 0
.................................TGTGCACCTGCTTCCGCCTCGGATCCTT............................................................................................................................ 28 1 8 0.13 1 0 1 0 0 0 0 0
...................................TGCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 24 0 8 0.13 1 1 0 0 0 0 0 0
.....................................CACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 22 0 8 0.13 1 1 0 0 0 0 0 0
....................................GCACCTGCTTCCGCCTCTGATCC.............................................................................................................................. 23 0 8 0.13 1 1 0 0 0 0 0 0
......................................ACCTGCTTCCGCCTCTGATCCTTCA.......................................................................................................................... 25 1 8 0.13 1 1 0 0 0 0 0 0
.......................................CCTGCTTCCGCCTCTGATCCTTCT.......................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0
....................................GCACCTGCTTCCGCCGCTGATCCT............................................................................................................................. 24 1 8 0.13 1 1 0 0 0 0 0 0
...............................CCTGTGCACCTGCTTCCGCCT..................................................................................................................................... 21 0 8 0.13 1 0 0 1 0 0 0 0
....................................GCACCTGCTTCCGCCTCTGATCCTTCT.......................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0 0 0
...................................TGCACCTGCTTCCGCCTCTGATCCTC............................................................................................................................ 26 1 8 0.13 1 1 0 0 0 0 0 0
....................................GCGCCTGCTTCCGCCTCTGATCCT............................................................................................................................. 24 1 8 0.13 1 1 0 0 0 0 0 0
..........................................GCTTCCGCCTCAGATCCTTCTT......................................................................................................................... 22 1 8 0.13 1 1 0 0 0 0 0 0
....................................GCACCTGCTTCCGCCTCTGATCCTT............................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0 0
..................................GTGCACCTGCTTCCGCCTCTGAT................................................................................................................................ 23 0 8 0.13 1 1 0 0 0 0 0 0
.................................TGTGGACCTGCTTCCGCCTCTGATCCTT............................................................................................................................ 28 1 8 0.13 1 0 1 0 0 0 0 0
..................................GTGCACCTGCTTCGGCCCCTGATCCT............................................................................................................................. 26 2 8 0.13 1 1 0 0 0 0 0 0
..................................................................................................................................................CCCCTTCGCTGCCTGTTGACGT................. 22 1 9 0.11 1 0 0 1 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGATGCCTGTTGACGT................. 25 1 9 0.11 1 0 1 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGTCTGTTGAC................... 25 1 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTGCGCTTCGCTGCCTGTTGAC................... 25 1 9 0.11 1 1 0 0 0 0 0 0
..............................................................................................................................................TGTTCCGCTTCGCTGCCTGTTGAC................... 24 1 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGATCCGCTTCGCTGCCTGTTGACGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGAA................... 23 1 9 0.11 1 1 0 0 0 0 0 0
................................................................................................................................................CTCCGCTTCGCTGACTGTTGAC................... 22 2 9 0.11 1 1 0 0 0 0 0 0
........................................................................................................................................AACCAGTGGTCCGCTTCGCTGCCTGT....................... 26 0 9 0.11 1 1 0 0 0 0 0 0
..............................................................................................................................................TGGTCCGCTTCGTTGCCTGTTGACG.................. 25 1 9 0.11 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGACT.................. 24 1 9 0.11 1 1 0 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCCTTT....................... 24 1 9 0.11 1 0 0 1 0 0 0 0
...............................................................................................................................................GGTCCGATTCGCTGCCTGTTGACGT................. 25 1 9 0.11 1 0 1 0 0 0 0 0
............................................................................................................................................AGTGGTCCGCTTCGCTGCATGTTGAC................... 26 1 9 0.11 1 0 1 0 0 0 0 0
..................................................................................................................................................CCGCTTCGCTGCCTGTTGAC................... 20 0 9 0.11 1 0 0 1 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCATCGCTCCCTGTTG..................... 26 2 9 0.11 1 0 1 0 0 0 0 0
............................................................................................................................................AGGGGTCCGCTTCGCTGCCTGTTGAC................... 26 1 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGACG.................. 24 0 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGGCTGTTGAC................... 25 1 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTAGTCCGCTTCGCTGCCTGTTGACC.................. 26 2 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGGTGCCTGTTGACGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
......................................................................................................................................GAAACCAGTGGTCCGCTTCGCTGCCT......................... 26 0 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................................AGTGGTCAGCTTCGCTGCCTGTTGAC................... 26 1 9 0.11 1 0 1 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTTGAAGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
..............................................................................................................................................TGGTCCGCTTCGCTGCCTGTTGACG.................. 25 0 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCAGCTTCGCTGCCTGTTGACGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGGCCGCTTCGCTGCCTGTTGAC................... 23 1 9 0.11 1 0 0 0 0 1 0 0
...............................................................................................................................................GGTCAGCTTCGCTGCCTGTTGAAGT................. 25 2 9 0.11 1 0 1 0 0 0 0 0
..............................................................................................................................................CGGTCCGCTTCGCTGCCTGTTGAC................... 24 1 9 0.11 1 0 0 1 0 0 0 0
.............................................................................................................................................GTGGGCCGCTTCGCTGCCTGTTGAC................... 25 1 9 0.11 1 1 0 0 0 0 0 0
.........................................................................................................................................ACCAGTGGTCCGCTTCGCTGCCTGT....................... 25 0 9 0.11 1 0 0 1 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCCTGTCGAC................... 25 1 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................................AGTGGTCCGCTTCGCTGACTGTTGAC................... 26 1 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGAAGT................. 25 1 9 0.11 1 0 1 0 0 0 0 0
.............................................................................................................................................GTGGTCCTCTTCGCTGCCTGTTGACGT................. 27 1 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGCTGCGTGTTGACGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
.........................................................................................................................................ACCAGTGGTCCGCTTCGCTGCCTG........................ 24 0 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................................AGTGGTACGCTTCGCTGCCTGTAGAC................... 26 2 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGGTGCCTCTTGACGT................. 25 2 9 0.11 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCTGTTGGC................... 23 1 9 0.11 1 0 0 1 0 0 0 0
.....................................................................................................................................CGAAACCAGTGGTCCGCTTCGCTGCCTG........................ 28 0 9 0.11 1 1 0 0 0 0 0 0
..........................................................................................................................................CCAGTGGTCCGCTTCGCTGCATGTTG..................... 26 1 9 0.11 1 0 1 0 0 0 0 0
.........................................................................................................................................ACCAGTGGTCCGCTTCGCTTCCTGTTGA.................... 28 1 9 0.11 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGGTGCCTGTTGACGT................. 25 1 9 0.11 1 0 1 0 0 0 0 0
...........................................................................................................................................CAGTGGTCCGCTGCGCTGCCT......................... 21 1 9 0.11 1 1 0 0 0 0 0 0
................................................................................................................................................GTCCGCTTCGCTGCCTGTTGACGTC................ 25 0 9 0.11 1 1 0 0 0 0 0 0
.............................................................................................................................................GTGGTCCGCTTCGTTGCCTGTTGACGT................. 27 1 9 0.11 1 0 1 0 0 0 0 0
..............................................................................................................................CCAGAAACGAAACCAGTAGTCCGCTT................................. 26 2 10 0.10 1 0 1 0 0 0 0 0
.....................................................................................................................................CGAAACCAGTGGTCCGCTTCGCTGC........................... 25 0 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................................................................CGAAACCAGTGGTCCGCTTCGCTGCC.......................... 26 0 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................................................................CGAAACCAGTGGTCCGCATCGCTGCC.......................... 26 1 10 0.10 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCGGTTGACGT................. 25 1 10 0.10 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTAGCTGCCTGTTGACGT................. 25 1 10 0.10 1 0 1 0 0 0 0 0
......................................ACCTGCTTCCGTCTATGATCCT............................................................................................................................. 22 2 10 0.10 1 0 1 0 0 0 0 0
...............................................................................................................................................GGTCCGCTTCGCTGCCAGTTGACGT................. 25 1 10 0.10 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:230031-230215 + dya_145 AGCCAGCGGGAGCCCC--AAGCCG----------------------------TGG------GAAGCCGGACACG--------------------------TGGACGAAGGCGGAGACT------------------AGGAAGAAGGCACGCCTAT-CGCGGAGACCCGACGCTGTTATAGTCGAAGCGAAGGG-AAAACCTAC---AGCGAGGTCTTCGCTTTGGTCACCAGGCGAAGCGACGGACAACTGCAGGAGTTAGAGAGGAACG
droEre2 scaffold_4851:41206-41391 - AGCAAGCTGGAATCCA--GAGCCA----------------------------TGG------CAAGCCTGACACA--------------------------CGGACGAAGGTGGAGGCG------------------AGGAAAAAAACACACTTGT-CGCGGAGACCCGACGCAGTGATAGTGGAAGCGAACGGCAAGACCTAC---AGCGAGGTCTTGGCTTTGGTCACGAGGCGAAGCGACGGTCAACTGCAGGAGCTGGGAAAGAGCG
droSec2 scaffold_46:222412-222538 - AGCCAGCTGGAATCAA--GAGCAG----------------------------TGT------TGATCCAGACACG--------------------------TGGACGAAGGCGAAGACG------------------AGGAAGAAGGCACGCCTGT-CGCGCAGACCCTACGCAACGATAGTCGAAGCGAAGGGAAAGACCTAC---AGCGA-----------------------------------------------------------
droSim2 node_122314:616-748 + AC-------------------------------------------------------------------------------------------------------------------T------------------AGGAAGAAGGCACGCCTAG-CGCGGAGACCCGACGCTGTCATAGTCGAAGCGAAGGGAAAAACCTAC---AGCGAGGTCTTGGCTTTGGTCACCAGGCGAAGCGACGGACAACTGCAGGAGTTGGGGAGGAACG
dm3 chr3LHet:1270155-1270296 + AGCCAGCTGGAATCCC--TAGCCG----------------------------AGG------TAGGCCAGA---------------------------------------------------------------------------------------GCGGAGACCCTATCCA--GATAGTCGAAGCGAAGGTTAAGACGTAC---AGCGAGGTCTTGGCTTTGGTCACCCAGCGAAGCGACGGACAACTGCGGCAACTGGGAAAGAACG
droEug1 scf7180000409094:14992-15194 - GGACAGCGGGAGTAGG--GGGCCA----------------------------GAG------GATGGCCGCAC-AGAC-----------------------CGCA---GCGTCAGGACCAGGATGGAAACAGCTTCACGGAGGAAGCCAAGGACGT-CCACCCGACCCGACGCGCTAGTCGTGGAAGGCAAGGGAATGAAGTAC---AGCGAGGTGCTTGCCTTGGTCACCAGACGGCGGGACGGCCAGCTGAAGGAATTCATTCAAAATG
droBia1 scf7180000301361:17396-17606 - ACAGGAACC-----CC--CAAAAGGGTCTTACGAAGTCGTGATTCCGATCCCTT-------GATTCCGGTTGCCTGG-----------------------TGGG---AGGTAGTCAAGAAG---------------AAACTGAGGGCCTAG-CGTCACGCAAGACTCGATGGGGTCAATGTTCAGGCAAGCGGGAAATCATAC---AGCAAGGTGCTAGCAATGGTGACTCGAAGTGACGACAAACATTTGTTGGACCTGGGGAGTTGTG
droTak1 scf7180000413342:4030-4221 - AGCCCGATGGGAACCC------------------------TATCCCGAGCCGAAG------CCGCCCAGACGCG--------------------------TGGCAGAAAGCCGAGCCT------------------AGGAAGAGAGCCCGCAAAA-ATAGGCGACCGGAAGCAGTGGTCATCGAGGCCAACGGGAAATCCTAC---AGTGAGGTCCTGGCGATGGTCACCCGGCGAAGCGACGGCAAGCTACAGGATCTTAGCGAGAGCG
droEle1 scf7180000491238:1161079-1161262 + GC-CAGCAGCGGAACC--GAGCCC----------------------------CAA------CAAATCCCCCGAG--------------------------TGGAATAGGGCCGAGCAA------------------AGAAAAGAAGCCCGCAATA-CACGGCGGCCCGATGCCGTAGTTGTCGAGGCGAAAGGAAAAACCT-C---AGCGAAGTCTTGGCAATGGTCACCAGGCGCAGCGATGGTCAGCTGCAAGATCTGAGCAAGAGCG
droKik1 scf7180000301936:12372-12558 + AGCCCGGAAGCCT-GT--GAGCCA----------------------------GGA------GAACCCCGAAAC-GAA-----------------------TGGG---AGGTCGTGGCGAGGAAGACCAGAA------------CAGCG----CGCCGCACTCGGCCAGACGCTGTCATTGTCCACGCGAGCGGCAAGTCCTAC---AGCGAGGTGCTCGCAATGGTGACGAGGAGAGACGACAAGCAGCTGTCGGACCTGGGACGCTGTG
droAna3 scaffold_13417:5881168-5881334 - AGCCAACGC-------------CG----------------------------CT------G-AAGCAGGA-CCG---CGA-----------------------TGGGAATCGGCGAAG------------------TGGAAGAAGTCCAGGACGT-CCACTCGCCCTGACGCGTTGATAGTGGAAGCCAAGGGGCTTAAATAT---AGCGAGGTCCTGGCGATGGTCACCAGACGGCAGGACGGGCAGCTAAACGAATTTGT------CG
droBip1 scf7180000391524:6320-6487 - AGACCGCAGGGCC-----------------------------------------------------AGGA-CCA---GGA-----------------------TGGGAAACAGCATCA------------------CGGAGGAAGCCAAGGACGT-CCACCCGACCTGACGCGCTAGTCGTGGAAGCCAAGGGAATGAAGTAC---AGCGAGGTGCTTGCCTTGGTCACCAGACGGCAGGACGGCCAGCTGAAGGAATTCAGCCAAAATG
dp5 Unknown_group_298:3401-3590 - GCCATGAGGCAGCCCAA-GAGCCC----------------------------CGG------AATCCCGGACAGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------AGGCCGAGAGCA-GCACGCCGCGCTCACCCAGACGCGGTCATAGTTCAGGCCTCCGGGAAGTCGTAC---AGCGAGGTTCTGGCAATGGTCACCAGACGAGACGACAACCAGCTTTCGGACCTGGGAAGCTGCG
droPer2 scaffold_1384:397-569 + AGCCAGCCGC------------------------------------------------------------------------------------------TGGT---GGATCCGGACGAAGAAGACGAGGGCAGCCAAGAAGCCGGCTAGGAAAC-CTCACCGCCCGGACGCCGTGGTCGTCGAGGCGAAAGGAAAAACCTAC---AGCGAGGGGCTTGCCCTGGGTACCCGGAGAGAAGACGGTCAGCTTCAGCACCTGAGTACGAGCG
droWil2 scf2_1100000002597:6466-6678 + CAACAGCAGTATCACCAGGACCAG----------------------------TAGTAGCTG-AAACAACACACG---CAACGAACATCGCTGGAGGGAAATAGCACAAGGTAAAAAGC------------------AAGCCGAGACCCATTAAAA-AGAAGAGGCCAGACGTCATCATGGTGAAGTGTAAAGACCCAGCCAATTACGCGATGGTACTGAAGTCAGTCCACA------CAGACGCCGGAATCCAGCAGTTCAAGGAGAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AGCCAGCGGGAGCCCC--AAGCCG----------------------------TGG------GAAGCCGGACACG--------------------------TGGACGAAGGCGGAGACT------------------AGGAAGAAGGCACGCCTAT-CGCGGAGACCCGACGCTGTTATAGTCGAAGCGAAGGG-AAAACCTAC---AGCGAGGTCTTCGCTTTGGTCACCAGGCGAAGCGACGGACAACTGCAGGAGTTAGAGAGGAACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................CGGACAACTGCAGGAGTTAGAGA......2313.00303000000000
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCCT.....................................................................................................................2352.001008200000000
....................................................................................................................................................................................TCGAAGCGAAGGG-AAAACCTAC---AG..............................................................2411.00100000010000
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCCTAT-..................................................................................................................2521.00200000020000
.........................................................................................................................................................................................GCGAAGGG-AAAACCTAC---AGCGAGGTC.......................................................2611.00101000000000
.............................................................................................................................................................................................................................................GCGACGGACAACTGCAGGAGTTAGA........2511.00101000000000
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCC......................................................................................................................2250.80401300000000
........................................................................................................................................................TAT-CGCGGAGACCCGACGCTGTTATAA..........................................................................................2750.80400000000004
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCCTA....................................................................................................................2450.80403000010000
................................................................................................................GAGACT------------------AGGAAGAAGGCACGC.......................................................................................................................2150.60303000000000
..................................................................................................................GACT------------------AGGAAGAAGGCACGCCTAT-..................................................................................................................2320.50100000000001
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCCTAT-C.................................................................................................................2620.50100000010000
................................................................................................................GAGACT------------------AGGAAGAAGGCACGCCTAT-CG................................................................................................................2720.50101000000000
.................................................................................................................AGACT------------------AGGAAGAAGGCACGCCTAT-..................................................................................................................2420.50101000000000
...................................................................................................................ACT------------------AGGAAGAAGGCACGCCTAT-CGC...............................................................................................................2530.33101000000000
................................................................................................................................................................GAGACCCGACGCTGTTATAGTCGAAG....................................................................................2640.25101000000000
.............................................................................................................................................................................................................................TTGGTCACCAGGCGAAGCGACGGACAAC.....................2890.22200000000002
....................................................TGG------GAAGCCGGACACG--------------------------TGGACGAAGG................................................................................................................................................................2650.20101000000000
..........................................................................................................................................................T-CGCGGAGACCCGACGCTGTTATA...........................................................................................2450.20101000000000
...................................................................................................................................................ACGCCTAT-CGCGGAGACCCGACGC..................................................................................................2460.17101000000000
.......................................................................................................................................................................................................................................GGCGAAGCGACGGACAACTGCAGG...............2480.13101000000000
............................................................................................................................................................................................................................................AGCGACGGACAACTGCAGGAGTT...........2380.13101000000000
........................................................................CG--------------------------TGGACGAAGGCGGAGACA------------------......................................................................................................................................2080.13101000000000
.......................................................................................................................................................................................................................................GGCGAAGCGACGGACAACTGCAGGA..............2580.13101000000000
...................................................................................................................................................................................................................................ACCAGGCGAAGCGACGGAC........................1990.11101000000000
...................................................................................................................................................................................................................................ACCAGGCGAAGCGACGGACAACTGC..................2590.11100100000000
..................................................................................................................................................................................................................................CACCAGGCGAAGCGACGGACAACTG...................2590.11101000000000
.............................................................................................................................................................................................................................TTGGTCACCAGGCGAAGCGACGGAC........................2590.11101000000000
.................................................................................................................................................................................................................................TCACCAGGCGAAGCGACGGACAACTGCA.................2890.11101000000000
..............................................................................................................................................................................................................................TGGTCACCAGGCGAAGCGACGGAC........................2490.11100000010000
..............................................................................................................................................................................................................................TGGTCACCAGGCGAAGCGACGGACT.......................2590.11100100000000
...................................................................................................................................................................................................................................ACCAGGCGAAGCGACGGACAAC.....................2290.11100000010000
.................................................................................................................................................................................................................................TCACCAGGCGAAGCGACGGACAAC.....................2490.11101000000000
...................................................................................................................................................................................................................................ACCAGGCGAAGCGACGGACAACT....................2390.11101000000000
............................................................................................................................................................................................................................TTTGGTCACCAGGCGAAGCGACGG..........................24100.10100000000001
.............................................................................................................................................................................................................................TTGGTCACCAGGCGAAGCGA.............................20100.10101000000000
.............................................................................................................................................................................................................................TTGGTCACCAGGCGAAGCGACG...........................22100.10101000000000
droEre2
AGCAAGCTGGAATCCA--GAGCCA----------------------------TGG------CAAGCCTGACACA--------------------------CGGACGAAGGTGGAGGCG------------------AGGAAAAAAACACACTTGT-CGCGGAGACCCGACGCAGTGATAGTGGAAGCGAACGGCAAGACCTAC---AGCGAGGTCTTGGCTTTGGTCACGAGGCGAAGCGACGGTCAACTGCAGGAGCTGGGAAAGAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................GCAAGACCTAC---AGCGAGGTCTTGGCTTTGGT............................................31200.4590000009
........................................................................................................................................................................................................TAC---AGCGAGGTCTTGGCTTTGGTCACGA.......................................2850.4022000000
..........................................................................................................................................................T-CGCGGAGACCCGACGCAGTG..............................................................................................2130.3311000000
........................................................................................................................................................TGT-CGCGGAGACCCGACGCAGTGATA...........................................................................................2630.3311000000
..........................................................................................................................................................................................................................GCTTTGGTCACGAGGCGAAGCGA.............................2340.2510000001
........................................................................................................................................................................................................................TGGCTTTGGTCACGAGGCGAAGCGAC............................2640.2511000000
...................................................................................................................................................................ACCCGACGCAGTGATAGTGGAAGCGT.................................................................................2650.2010000100
.......................................................................................................................................................................GACGCAGTGATAGTGGAAGCGA.................................................................................2250.2010000100
.........................................................................................................................................................................................................AC---AGCGAGGTCTTGGCTTTGGTCACGA.......................................2760.1711000000
...................................................................................................................................................................................................................................................GTCAACTGCAGGAGCTGGGAAAG....2360.1711000000
...................................................................................................................................................................................................................................................GTCAACTGCAGGAGCTGGGAATCC...2460.1710000100
..........................................................................................................................................................................................................C---AGCGAGGTCTTGGCTTTGGTCACGAGG.....................................2860.1711000000
........................................................................................................................................................................................................TAC---AGCGAGGTCTTGGCTTTGGT............................................23200.1533000000
..........................................................................................................................................................................................................C---AGCGAGGTCTTGGCTTTGGTCAC.........................................2470.1411000000
.....................................................................................................................................................................................................................TCTTGGCTTTGGTCACGAGGCGAAA................................2570.1411000000
.....................................................................................................................................................................................................................TCTTGGCTTTGGTCACGAGGCGA..................................2380.1311000000
....................................................................................................................................................................................................................................................TCAACTGCAGGAGCTGGGAT......2080.1311000000
........................................................................................................................................................................................................TAC---AGCGAGGTCTTGGCTTTG..............................................21200.1022000000
......................................................................................................................................................................................................CCTAC---AGCGAGGTCTTGGCTTTGGT............................................25200.0511000000
........................................................................................................................................................................................................TAC---AGCGAGGTCTTGGCTTTGG.............................................22200.0511000000
.....................................................................................................................................................................................................ACCTAC---AGCGAGGTCTTGGCTTTGG.............................................25200.0511000000
........................................................................................................................................................................................................TAC---AGCGAGGTCTTGGCTT................................................19200.0511000000
droSec2
AGCCAGCTGGAATCAA--GAGCAG----------------------------TGT------TGATCCAGACACG--------------------------TGGACGAAGGCGAAGACG------------------AGGAAGAAGGCACGCCTGT-CGCGCAGACCCTACGCAACGATAGTCGAAGCGAAGGGAAAGACCTAC---AGCGA-----------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
AC-------------------------------------------------------------------------------------------------------------------T------------------AGGAAGAAGGCACGCCTAG-CGCGGAGACCCGACGCTGTCATAGTCGAAGCGAAGGGAAAAACCTAC---AGCGAGGTCTTGGCTTTGGTCACCAGGCGAAGCGACGGACAACTGCAGGAGTTGGGGAGGAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................GCTTTGGTCACCAGG.....................................1511.00100000000100000000
dm3
AGCCAGCTGGAATCCC--TAGCCG----------------------------AGG------TAGGCCAGA---------------------------------------------------------------------------------------GCGGAGACCCTATCCA--GATAGTCGAAGCGAAGGTTAAGACGTAC---AGCGAGGTCTTGGCTTTGGTCACCCAGCGAAGCGACGGACAACTGCGGCAACTGGGAAAGAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................TGGTCACCCAGCGAAGCGACG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CCAGCGAAGCGACGGACA.......................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
GGACAGCGGGAGTAGG--GGGCCA----------------------------GAG------GATGGCCGCAC-AGAC-----------------------CGCA---GCGTCAGGACCAGGATGGAAACAGCTTCACGGAGGAAGCCAAGGACGT-CCACCCGACCCGACGCGCTAGTCGTGGAAGGCAAGGGAATGAAGTAC---AGCGAGGTGCTTGCCTTGGTCACCAGACGGCGGGACGGCCAGCTGAAGGAATTCATTCAAAATGSizeHit CountTotal NormTotal
No Reads
droBia1
ACAGGAACC-----CC--CAAAAGGGTCTTACGAAGTCGTGATTCCGATCCCTT-------GATTCCGGTTGCCTGG-----------------------TGGG---AGGTAGTCAAGAAG---------------AAACTGAGGGCCTAG-CGTCACGCAAGACTCGATGGGGTCAATGTTCAGGCAAGCGGGAAATCATAC---AGCAAGGTGCTAGCAATGGTGACTCGAAGTGACGACAAACATTTGTTGGACCTGGGGAGTTGTGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCCGATGGGAACCC------------------------TATCCCGAGCCGAAG------CCGCCCAGACGCG--------------------------TGGCAGAAAGCCGAGCCT------------------AGGAAGAGAGCCCGCAAAA-ATAGGCGACCGGAAGCAGTGGTCATCGAGGCCAACGGGAAATCCTAC---AGTGAGGTCCTGGCGATGGTCACCCGGCGAAGCGACGGCAAGCTACAGGATCTTAGCGAGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
GC-CAGCAGCGGAACC--GAGCCC----------------------------CAA------CAAATCCCCCGAG--------------------------TGGAATAGGGCCGAGCAA------------------AGAAAAGAAGCCCGCAATA-CACGGCGGCCCGATGCCGTAGTTGTCGAGGCGAAAGGAAAAACCT-C---AGCGAAGTCTTGGCAATGGTCACCAGGCGCAGCGATGGTCAGCTGCAAGATCTGAGCAAGAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCCCGGAAGCCT-GT--GAGCCA----------------------------GGA------GAACCCCGAAAC-GAA-----------------------TGGG---AGGTCGTGGCGAGGAAGACCAGAA------------CAGCG----CGCCGCACTCGGCCAGACGCTGTCATTGTCCACGCGAGCGGCAAGTCCTAC---AGCGAGGTGCTCGCAATGGTGACGAGGAGAGACGACAAGCAGCTGTCGGACCTGGGACGCTGTGSizeHit CountTotal NormTotal
No Reads
droAna3
AGCCAACGC-------------CG----------------------------CT------G-AAGCAGGA-CCG---CGA-----------------------TGGGAATCGGCGAAG------------------TGGAAGAAGTCCAGGACGT-CCACTCGCCCTGACGCGTTGATAGTGGAAGCCAAGGGGCTTAAATAT---AGCGAGGTCCTGGCGATGGTCACCAGACGGCAGGACGGGCAGCTAAACGAATTTGT------CGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................AAGTCCAGGACGT-CCACTCGCCC........................................................................................................2313.003300000
..............................................................................................................................................AAGTCCAGGACGT-CCACTCGCC.........................................................................................................2213.003300000
................................................................................................................................................................................................GGCTTAAATAT---AGCGAGGTCCTGG...................................................2451.608800000
................................................................................................................................................................................................GGCTTAAATAT---AGCGAGGTCCTGGC..................................................2551.407610000
........................................................................CG---CGA-----------------------TGGGAATCGGCGAAG------------------TGG...................................................................................................................................2311.001100000
......CGC-------------CG----------------------------CT------G-AAGCAGGA-CCG---CGA-----------------------.......................................................................................................................................................................2211.001100000
..............................................................................................................................................AAGTCCAGGACGT-CCACTCGCCCTG......................................................................................................2511.001100000
................................................................................................................................................................................................GGCTTAAATAT---AGCGAGGTCCTG....................................................2350.603210000
..............................................................................................................................................................................................................................TGGTCACCAGACGGCAGGACGGG.........................2340.502200000
............................................................................................................................................................................................................................GATGGTCACCAGACGGCAGGACGGGC........................2630.331010000
..................................................................................................................................................................................................................................CACCAGACGGCAGGACGGGCA.......................2140.251100000
................................................................................................................................................................................................GGCTTAAATAT---AGCGAGGTCCTGGCG.................................................2640.251100000
....................................................................................................................................................................................................TAAATAT---AGCGAGGTCCTGGCGATGGT............................................2740.251010000
..............................................................................................................................................................................................................................TGGTCACCAGACGGCAGGACGGGCAGC.....................2740.251001000
.................................................................................................................................................................................................GCTTAAATAT---AGCGAGGTCCTGG...................................................2350.201100000
...................................................................................................................................................................................................TTAAATAT---AGCGAGGTCCTGG...................................................2150.201100000
....................................................................................................................................................................................................................................CCAGACGGCAGGACGGGCAGCTAAT.................2550.201100000
..............................................................................................................................................................................................................................TGGTCACCAGACGGCAGGACGG..........................2250.201100000
..........................................................................................................................................................................................................T---AGCGAGGTCCTGGCGATGGTCACC........................................2560.171100000
.......................................................................................................................................................................................................ATAT---AGCGAGGTCCTGGCGATGG.............................................2360.171100000
..........................................................................................................................................................................................................................GCGATGGTCACCAGACGGCAGGA.............................2380.131100000
.........................................................................................................................................................................................................................GGCGATGGTCACCAGACGGCAG...............................2280.131100000
..........................................................................................................................................................................................................................GCGATGGTCACCAGACGGCAGG..............................2290.111100000
...................................................................................................................................................................................................TTAAATAT---AGCGAGGTGA......................................................18100.101100000
..................................................................................................................................................................................................................AGGTCCTGGCGATGGTCACCAGAC....................................24200.051100000
droBip1
AGACCGCAGGGCC-----------------------------------------------------AGGA-CCA---GGA-----------------------TGGGAAACAGCATCA------------------CGGAGGAAGCCAAGGACGT-CCACCCGACCTGACGCGCTAGTCGTGGAAGCCAAGGGAATGAAGTAC---AGCGAGGTGCTTGCCTTGGTCACCAGACGGCAGGACGGCCAGCTGAAGGAATTCAGCCAAAATGSizeHit CountTotal NormTotal
No Reads
dp5
GCCATGAGGCAGCCCAA-GAGCCC----------------------------CGG------AATCCCGGACAGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------AGGCCGAGAGCA-GCACGCCGCGCTCACCCAGACGCGGTCATAGTTCAGGCCTCCGGGAAGTCGTAC---AGCGAGGTTCTGGCAATGGTCACCAGACGAGACGACAACCAGCTTTCGGACCTGGGAAGCTGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGC..................................................23729.002030177000012500
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGG...................................................22724.291700124105033700
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCA.................................................2476.714703900001700
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTG....................................................2174.293002500100400
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGG..........................................................................................................................................................1954.202101900002000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCAA................................................2574.002802100000700
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGC.........................................................................................................................................................2053.401701600000100
...................................................................................................................................................................................................AGTCGTAC---AGCGAGGTTCTGGC..................................................2273.002102100000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCC........................................................................................................................................................2152.601301200000100
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTG...........................................................................................................................................................1852.001001000000000
...................................................................................................................................................................................................AGTCGTAC---AGCGAGGTTCTGG...................................................2171.861301300000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCA.......................................................................................................................................................2251.4070500001100
..........................................................................................................................................................................................................................GCAATGGTCACCAGACGAGACGACA...........................2511.0010100000000
..................................................................................................................................................................................................................................CACCAGACGAGACGACAACCAGC.....................2311.0010100000000
.................................................................................................................................................................................................................................TCACCAGACGAGACGACAACCAGCT....................2511.0010100000000
......................................................................................................................................................................................................................................................AGCTTTCGGACCTGGGAAGCTGC.2311.0010100000000
..........................................................................................................................................................................................................................GCAATGGTCACCAGACGAGACGA.............................2311.0010100000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------A.....................................................................................................................................2551.0050500000000
.................................................................................................................................................................................................................................TCACCAGACGAGACGACAACCAGCTT...................2611.0010100000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------......................................................................................................................................2450.8040400000000
..................................................................CGGACAGCGAA-----------------------TGGA---GCGTGGTGG..........................................................................................................................................................2440.7530100000200
...............................................................TCCCGGACAGCGAA-----------------------TGGA---GCGTGG.............................................................................................................................................................2440.7530300000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAA......................................................................................................................................................2350.6030300000000
.....................................................................ACAGCGAA-----------------------TGGA---GCGTGGTGGC.........................................................................................................................................................2240.5020100001000
.............................................................................................................................................GAGAGCA-GCACGCCGCGCTCACCC........................................................................................................2420.5010100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGA...........................................................................2140.5020200000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGG.............................................................................1940.5020200000000
.................................................................................................................................................................CACCCAGACGCGGTCATAGTTCAGG....................................................................................2520.5010100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGAAGTCG......................................................................2640.5020200000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCAAT...............................................2670.4330100000200
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTC......................................................1970.4330210000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCT.....................................................2070.4330300000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGA..........................................................................................................................................................1950.4020100100000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------TA....................................................................................................................................2650.4020200000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------AG....................................................................................................................................2650.4020200000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCAATG..............................................2770.2920200000000
...................................................................................................................................................................................................AGTCGTAC---AGCGAGGTTCTGGCA.................................................2370.2920200000000
..............................................................................................................................................................................................................AGCGAGGTTCTGGCAATGGTCA..........................................2270.2920200000000
...................................................................................................................................................................................................AGTCGTAC---AGCGAGGTTCTGGCAA................................................2470.2920200000000
.....................................................................ACAGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------......................................................................................................................................2640.2510100000000
......................................................................................................................................................................................CAGGCCTCCGGGAAGTCGTAC---AG..............................................................2340.2510100000000
..................................................................CGGACAGCGAA-----------------------TGGA---GCGTGG.............................................................................................................................................................2140.2510100000000
...................................................................GGACAGCGAA-----------------------TGGA---GCGTGGTGGC.........................................................................................................................................................2440.2510100000000
..............................................................ATCCCGGACAGCGAA-----------------------TGGA---GC.................................................................................................................................................................2140.2510100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCG..............................................................................1840.2510100000000
.CCATGAGGCAGCCCAA-GAGCCC----------------------------..........................................................................................................................................................................................................................2240.2510100000000
.........CAGCCCAA-GAGCCC----------------------------CGG------AATCCCGGAC.......................................................................................................................................................................................................2740.2510100000000
...................AGCCC----------------------------CGG------AATCCCGGACAGC....................................................................................................................................................................................................2140.2510100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGAAGT........................................................................2440.2510100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGAAGA........................................................................2440.2510000001000
.........................................................................................................................................................................CGCGGTCATAGTTCAGGCCTCCGGG............................................................................2540.2510100000000
..............................................................ATCCCGGACAGCGAA-----------------------TGGA---GCGTG..............................................................................................................................................................2440.2510100000000
......................................................G------AATCCCGGACAGCGAA-----------------------TGGA---GCGTGG.............................................................................................................................................................2740.2510100000000
......................................................G------AATCCCGGACAGCGAA-----------------------TGGA---GCG................................................................................................................................................................2440.2510100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGAA..........................................................................2240.2510100000000
......................................................................CAGCGAA-----------------------TGGA---GCGTGGTGG..........................................................................................................................................................2040.2510100000000
..............................................................ATCCCGGACAGCGAA-----------------------TGGA---G..................................................................................................................................................................2040.2510100000000
.................................................................................................................................................................................TAGTTCAGGCCTCCGGG............................................................................1740.2510000000100
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGGAAGTC.......................................................................2540.2510100000000
.....................................................................................................................CAAG---------------AGGCCGAGAGCA-GCACGCCGCGCT.............................................................................................................2850.2010000000100
........................................................................GCGAA-----------------------TGGA---GCGTGGTGGCCA.......................................................................................................................................................2150.2010100000000
..........................................................................................................................................GCCGAGAGCA-GCACGCCGCGCT.............................................................................................................2250.2010100000000
........................................................................GCGAA-----------------------TGGA---GCGTGGTGGCC........................................................................................................................................................2050.2010100000000
........................................................................GCGAA-----------------------TGGA---GCGTGGTGGCCAA......................................................................................................................................................2250.2010100000000
.......................................................................AGCGAA-----------------------TGGA---GCGTGGTGGCCAAG---------------AGG...................................................................................................................................2750.2010100000000
..............................................................................................................................................................................TCATAGTTCAGGCCTCCGGA............................................................................2050.2010100000000
............CCCAA-GAGCCC----------------------------CGG------AATCCCGGA........................................................................................................................................................................................................2350.2010100000000
.....GAGGCAGCCCAA-GAGCCC----------------------------CGG------.................................................................................................................................................................................................................2150.2010100000000
.......GGCAGCCCAA-GAGCCC----------------------------CGG------A................................................................................................................................................................................................................2060.1710100000000
........................................................................................................................G---------------AGGCCGAGAGCA-GCACGCCG.................................................................................................................2160.1710100000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTT.......................................................1870.1410100000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCA.....................................................2070.1410100000000
...................................................................................................................................................................CCCAGACGCGGTCATAGTTCAGG....................................................................................2370.1410100000000
.................................................................................................................................................................................................GAAGTCGTAC---AGCGAGGTTCTGGCA.................................................2570.1410100000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGT..................................................2370.1410100000000
...............................................................................................................................................................................................................GCGAGGTTCTGGCAATGGTCACCA.......................................2470.1410100000000
....................................................................................................................................................................CCAGACGCGGTCATAGTTCAGG....................................................................................2270.1410100000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGA..................................................2370.1410100000000
............................................................................A-----------------------TGGA---GCGTGGTGGCCAAG---------------AGGC..................................................................................................................................2370.1410100000000
...................................................................................................................................................................CCCAGACGCGGTCATAGTTCAGGC...................................................................................2470.1410100000000
.........................................................................................................................................................................CGCGGTCATAGTTCAGGA...................................................................................1870.1410100000000
.....................................................................................................................................................................................................TCGTAC---AGCGAGGTTCTGGCAA................................................2270.1410100000000
...................................................................................................................................................................................................AGTCGTAC---AGCGAGGTTCTGGCAAT...............................................2570.1410100000000
........................................................................................................................................................................................................TAC---AGCGAGGTTCTGGCAATGGTCACCA.......................................2870.1410100000000
....................................................................................................................................................................................................GTCGTAC---AGCGAGGTTCTGG...................................................2070.1410100000000
.......................................................................................................................................................................................................................CTGGCAATGGTCACCAGA.....................................1870.1410100000000
......................................................................................................GA---GCGTGGTGGCCAAG---------------AGGCCGAG..............................................................................................................................2470.1410100000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCAATGG.............................................2870.1410100000000
......................................................................................................................................................................AGACGCGGTCATAGTTCAGGCC..................................................................................2270.1410100000000
....................................................................................................................................................................CCAGACGCGGTCATAGTTCAGGCC..................................................................................2470.1410001000000
..................................................................................................................................................................................................AAGTCGTAC---AGCGAGGTTCTGGCAC................................................2570.1410100000000
....................................................................................................................................................................................................GTCGTAC---AGCGAGGTTCTGGC..................................................2170.1410100000000
.................................................................................................................................................................................................GAAGTCGTAC---AGCGAGGTTCTGG...................................................2370.1410100000000
.............................................................................................................GTGGTGGCCAAG---------------AGGCCGAGAGC...........................................................................................................................2380.1310100000000
.........................................................................................................................................................................CGCGGTCATAGTTCAGGTA..................................................................................1980.1310100000000
droPer2
AGCCAGCCGC------------------------------------------------------------------------------------------TGGT---GGATCCGGACGAAGAAGACGAGGGCAGCCAAGAAGCCGGCTAGGAAAC-CTCACCGCCCGGACGCCGTGGTCGTCGAGGCGAAAGGAAAAACCTAC---AGCGAGGGGCTTGCCCTGGGTACCCGGAGAGAAGACGGTCAGCTTCAGCACCTGAGTACGAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAACAGCAGTATCACCAGGACCAG----------------------------TAGTAGCTG-AAACAACACACG---CAACGAACATCGCTGGAGGGAAATAGCACAAGGTAAAAAGC------------------AAGCCGAGACCCATTAAAA-AGAAGAGGCCAGACGTCATCATGGTGAAGTGTAAAGACCCAGCCAATTACGCGATGGTACTGAAGTCAGTCCACA------CAGACGCCGGAATCCAGCAGTTCAAGGAGAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAAT...................................................................23200.40804130
...................ACCAG----------------------------TAGTAGCTG-AAACAACACACG---.................................................................................................................................................................................................2650.40202000
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAATT..................................................................24200.35705020
......................................................................................TCGCTGGAGGGAAATAGCACA...................................................................................................................................................................2130.33101000
.......................................................................................................CACAAGGTAAAAAGC------------------AAGCCGAGAC............................................................................................................................2530.33101000
.....................................................................................................................................................................................................................TACTGAAGTCAGTCCACA------CAGACGCCGG.......................28200.25505000
......................................................................................................................................................................................................................ACTGAAGTCAGTCCACA------CAGACGCCGG.......................27200.20404000
...................ACCAG----------------------------TAGTAGCTG-AAACAACACA......................................................................................................................................................................................................2450.20101000
......................................................................................................................................................................................................................ACTGAAGTCAGTCCACA------CAGACGCCG........................26200.20404000
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAA....................................................................22200.20404000
....................................................................................................................................................................CCAGACGTCATCATGGTGAAGTGT..................................................................................24180.17301020
.........TATCACCAGGACCAG----------------------------TAGTAGCTG-AA..............................................................................................................................................................................................................26130.15200020
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGGA......................23200.15303000
.................................................................................................................................................................................................................................TCCACA------CAGACGCCGGAATCCAGC...............24200.15302010
.................................................................................................................................................................................................................................TCCACA------CAGACGCCGGAATCCAGCAGT............27200.15300120
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAATTA.................................................................25200.15302010
.......................................................................ACG---CAACGAACATCGCTGGAGGG.............................................................................................................................................................................23180.11202000
.......................................................................ACG---CAACGAACATCGCTGGAGG..............................................................................................................................................................................22180.11202000
.........................................................................................................................................................AA-AGAAGAGGCCAGACGTCATCATGG..........................................................................................26200.10202000
........................................................................................................................................................................................................AATTACGCGATGGTACTGAAGTC...............................................23200.10202000
..................................................................................................................................................................................................................TGGTACTGAAGTCAGTCCACA------CAGACGC..........................28200.10200020
.......................................................................................................................................................................................................CAATTACGCGATGGTACTGAAGTCAG.............................................26200.10200020
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCG........................21200.10202000
...............................................................................................................................................................................................................................AGTCCACA------CAGACGCCGGAATCC..................23200.10202000
...................................................................................................................................................................................GTGAAGTGTAAAGACCCAGCCAAT...................................................................24200.10202000
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCA.....................................................................21200.10200020
...............................................................................................................................................................................................................................AGTCCACA------CAGACGCCGGAAT....................21200.10202000
..........................................................................................................................................................................................................TTACGCGATGGTACTGAAGTCAGT............................................24200.10201010
...........................................................................................................................................................................................TAAAGACCCAGCCAATTACGCGA............................................................23200.10202000
.....................................................................................................................................................................................GAAGTGTAAAGACCCAGCCAATTACG...............................................................26200.10200020
.......................................................................................................................................................................GACGTCATCATGGTGAAGTGTAAA...............................................................................24200.10202000
..................................................................AACACACG---CAACGAACATCGCTGG.................................................................................................................................................................................24120.08101000
.........................................................................G---CAACGAACATCGCTGGAGGGA............................................................................................................................................................................22170.06101000
.........................................................................G---CAACGAACATCGCTGGAGGGAAA..........................................................................................................................................................................24170.06101000
......................................................................CACG---CAACGAACATCGCTGGAGG..............................................................................................................................................................................23180.06101000
.......................................................................ACG---CAACGAACATCGCTGGAG...............................................................................................................................................................................21180.06101000
......................................................................CACG---CAACGAACATCGCTGGAGGG.............................................................................................................................................................................24180.06101000
..............................................................................AACGAACATCGCTGGAGG..............................................................................................................................................................................18180.06100010
................AGGACCAG----------------------------TAGTAGCTG-AAAC............................................................................................................................................................................................................21190.05100010
................AGGACCAG----------------------------TAGTAGCTG-AAACT...........................................................................................................................................................................................................22190.05101000
................AGGACCAG----------------------------TAGTAGCTG-AAACAAC.........................................................................................................................................................................................................24190.05101000
....................................................................................................................................................................CCAGACGTCATCATGGTGAAGT....................................................................................22190.05101000
........................................................................................................................................................................................................................TGAAGTCAGTCCACA------CAGACGCCGGAA.....................27200.05101000
......................................................................................................................................................................................................................ACTGAAGTCAGTCCACA------CAGACG...........................23200.05101000
............................................................................................................................................................AGAAGAGGCCAGACGTCATCATGGT.........................................................................................25200.05100010
..................................................................................................................................................CCATTAAAA-AGAAGAGGCCAGACG...................................................................................................24200.05101000
...............................................................................................................................................GACCCATTAAAA-AGAAGAGGCCAGA.....................................................................................................25200.05100010
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGG.......................22200.05101000
.......................................................................................................................................................................................AGTGTAAAGACCCAGCCAATTACG...............................................................24200.05101000
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGGAATA...................26200.05101000
..............................................................................................................................................................................TCATGGTGAAGTGTAAAGAC............................................................................20200.05100001
..........................................................................................................................................................................................................................AAGTCAGTCCACA------CAGACGCCGGA......................24200.05101000
...........................................................................................................................................................................................TAAAGACCCAGCCAATTACGCG.............................................................22200.05101000
...................ACCAG----------------------------TAGTAGCTG-AAACAAC.........................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................GTGAAGTGTAAAGACCCAGCCAT....................................................................23200.05101000
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGGAAAA...................26200.05100010
..........................................................................................................................................................................................................TTACGCGATGGTACTGAAGTCAG.............................................23200.05100010
...........................................................................................................................................CCGAGACCCATTAAAA-AGAAGAGG..........................................................................................................24200.05100010
...............................................................................................................................................................................................................................AGTCCACA------CAGACGCCGGAATCCAGC...............26200.05101000
...........................................................................................................................................................................................................TACGCGATGGTACTGAAGTCAGT............................................23200.05101000
........................................................................................................................................................................................................................TGAAGTCAGTCCACA------CAGACGCCGG.......................25200.05101000
..................................................................................................................................................................................................................................CCACA------CAGACGCCGGAATCC..................20200.05101000
......................................................................................................................................................TAAAA-AGAAGAGGCCAGACGT..................................................................................................21200.05100010
...................................................................................................................................................................................GTGAAGTGTAAAGACCCAGCCAA....................................................................23200.05101000
...........................................................................................................................................................................................TAAAGACCCAGCCAATTACGCGATGG.........................................................26200.05101000
.................................................................................................................................................................................................................................TCCACA------CAGACGCCGGAATCCA.................22200.05101000
.................................................................................................................................................................AGGCCAGACGTCATCATGG..........................................................................................19200.05101000
......................................................................................................................................................................................AAGTGTAAAGACCCAGCCAATTAC................................................................24200.05101000
.......................................................................................................................................................................................................................CTGAAGTCAGTCCACA------CAGACGCCGG.......................26200.05101000
........................................................................................................................................................AAA-AGAAGAGGCCAGACGTCATCATG...........................................................................................26200.05100010
.....................................................................................................................................................................................................................TACTGAAGTCAGTCCACA------CAGACGCCG........................27200.05101000
......................................................................................................................................................................................................CCAATTACGCGATGGTACTGA...................................................21200.05100010
.......................................................................................................................................................................GACGTCATCATGGTGAAGTGTAAAGA.............................................................................26200.05100010
...........................................................................................................................................................................................TAAAGACCCAGCCAATTACGCGATG..........................................................25200.05101000
......................................................................................................................................................................................................................ACTGAAGTCAGTCCACA------CAGACGC..........................24200.05100010
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAATTAC................................................................26200.05101000
.....................................................................................................................................................................................GAAGTGTAAAGACCCAGC.......................................................................18200.05101000
...................................................................................................................................................................................GTGAAGTGTAAAGACCCAGC.......................................................................20200.05100010
...................................................................................................................................................................................................................................CACA------CAGACGCCGGAATCCAGCAGTT...........26200.05100010
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAATTACG...............................................................27200.05101000
.................................................................................................................................................................................................................................TCCACA------CAGACGCCGGAATCCAGCAG.............26200.05100010
.......................................................................................................................................................................................................................CTGAAGTCAGTCCACA------CAGACGC..........................23200.05101000
.............................................................................................................................................................................................AAGACCCAGCCAATTACGCGATG..........................................................23200.05101000
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGGAA.....................24200.05101000
...........................................................................................................................................................................................................................AGTCAGTCCACA------CAGACGCCGGAAT....................25200.05101000
....................................................................................................................................................................................TGAAGTGTAAAGACCCAGCCAATTACGC..............................................................28200.05101000
........................................................................................................................................................................................................AATTACGCGATGGTACTGAAGTCA..............................................24200.05110000
......................................................................................................................................................TAAAA-AGAAGAGGCCAGACGTCA................................................................................................23200.05100010
...................................................................................................................................................................................GTGAAGTGTAAAGACCCAGCC......................................................................21200.05101000
......................................................................................................................................................................................AAGTGTAAAGACCCAGCCAAT...................................................................21200.05101000
........................................................................................................................................................................................................................TGAAGTCAGTCCACA------CAGACGCCGT.......................25200.05100010
.............................................................................................................................................................................ATCATGGTGAAGTGTAAAGACCC..........................................................................23200.05101000

Generated: 05/15/2015 at 04:20 PM