ID:

dya_14

 Coordinate:

X:10049125-10049187 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.5

Flybase annnotation

utr3 [utr3_minus_10826]

No Repeatable elements found

Sense Strand Reads

CAACTATTTATCAAATCTATGGCAGTTAAAAATTGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCATACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCATATTATTAACAATGAAAACACTAATGG

***********************************((((((..((((.((((((((((((..(((((((.((((((....)))....))).)))))))..)))))))))))).)))))).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M026

head

 M056

embryo

 V058

head

 M043

female body

 V052

head

 V046

embryo

 V120

male body		 SRR1275486

Male prepupae
..................................................TTTAGAATTCCTACGCTTTACC........................................................................................... 22 0 1 17059.00 17059 11576 4712 266 305 109 74 16 1
..........................................................................................CAAAGCGTTTGGATTCTGAAAC................................................... 22 0 1 2983.00 2983 1712 1005 136 38 36 13 43 0
..........................................................................................CAAAGCGTTTGGATTCTGAAA.................................................... 21 0 1 2019.00 2019 1897 20 67 4 15 2 13 1
..................................................TTTAGAATTCCTACGCTTTAC............................................................................................ 21 0 1 1189.00 1189 1018 78 42 34 14 2 1 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAA.................................................... 22 0 1 887.00 887 864 15 4 0 1 0 3 0
..................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................... 23 0 1 637.00 637 373 215 8 24 6 11 0 0
..................................................TGTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 610.00 610 0 610 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACT.................................................. 23 1 1 377.00 377 342 10 17 0 3 0 5 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACA.................................................. 23 1 1 368.00 368 268 12 46 2 11 6 23 0
..........................................................................................CAAAGCGTTTGGATTCTGAA..................................................... 20 0 1 256.00 256 227 6 14 1 6 0 2 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAA................................................... 22 1 1 224.00 224 209 5 4 1 3 0 2 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAAC................................................... 23 0 1 119.00 119 38 79 1 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGA...................................................... 19 0 1 116.00 116 101 0 9 1 2 0 3 0
.........................................................................................GCAAAGCGTTTGGATTCTGAA..................................................... 21 0 1 116.00 116 113 0 1 1 1 0 0 0
..................................................TTCAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 98.00 98 1 97 0 0 0 0 0 0
........................................................................GTCGCATACGAAATTCGG......................................................................... 18 0 1 90.00 90 78 8 1 0 1 2 0 0
..................................................TTTTGAATTCCTACGCTTTACC........................................................................................... 22 1 1 63.00 63 0 63 0 0 0 0 0 0
..........................................................................................CGAAGCGTTTGGATTCTGAAAC................................................... 22 1 1 57.00 57 2 55 0 0 0 0 0 0
..........................................................................................CAATGCGTTTGGATTCTGAAAC................................................... 22 1 1 50.00 50 0 50 0 0 0 0 0 0
...................................................TTAGAATTCCTACGCTTTACC........................................................................................... 21 0 1 44.00 44 7 12 1 22 0 2 0 0
..................................................TTTAGAATTCCTACGCTTTGCC........................................................................................... 22 1 1 36.00 36 29 4 1 2 0 0 0 0
..................................................TTTAGAATTCATACGCTTTACC........................................................................................... 22 1 1 32.00 32 3 28 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAAC........................................................................................... 22 1 1 27.00 27 27 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................... 23 1 1 27.00 27 25 1 1 0 0 0 0 0
...................................................TTAGAATTCCTACGCTTTACCG.......................................................................................... 22 0 1 26.00 26 14 7 1 4 0 0 0 0
.................................................CTTTAGAATTCCTACGCTTTACC........................................................................................... 23 1 1 25.00 25 1 21 0 2 0 1 0 0
..................................................TTTAGAATTTCTACGCTTTACC........................................................................................... 22 1 1 25.00 25 17 8 0 0 0 0 0 0
..................................................TTTAGAATTCTTACGCTTTACC........................................................................................... 22 1 1 24.00 24 23 1 0 0 0 0 0 0
..................................................TGTTGAATTCCTACGCTTTACC........................................................................................... 22 2 1 23.00 23 0 23 0 0 0 0 0 0
..................................................CTTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 22.00 22 6 12 2 1 0 1 0 0
..................................................TTTAGAATTCCTACCCTTTACC........................................................................................... 22 1 1 21.00 21 8 9 3 0 1 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGA...................................................... 20 0 1 21.00 21 18 0 2 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAAAAC................................................... 22 1 1 20.00 20 6 14 0 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAAAC................................................... 21 0 1 19.00 19 9 2 0 4 0 3 1 0
..................................................TTTAGAATTCCTACGCTTT.............................................................................................. 19 0 1 18.00 18 18 0 0 0 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACCG.......................................................................................... 23 1 1 18.00 18 0 18 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACC.................................................. 23 0 1 17.00 17 14 1 2 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACA........................................................................................... 22 1 1 17.00 17 2 14 0 0 1 0 0 0
..................................................TTTAGAATTACTACGCTTTACC........................................................................................... 22 1 1 16.00 16 12 4 0 0 0 0 0 0
..................................................TTTAGAATTCCTCCGCTTTACC........................................................................................... 22 1 1 16.00 16 0 14 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGG...................................................... 19 1 1 16.00 16 16 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTA............................................................................................. 20 0 1 16.00 16 10 1 1 2 2 0 0 0
..................................................GTTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 16.00 16 1 13 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAAA.................................................. 23 2 1 15.00 15 14 0 1 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGAAAC................................................... 22 1 1 15.00 15 3 12 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCCTTACC........................................................................................... 22 1 1 15.00 15 8 5 2 0 0 0 0 0
................................TTGTGGGCGCTGTAGAGT................................................................................................................. 18 0 1 14.00 14 11 0 2 0 1 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAAC................................................... 20 0 1 14.00 14 13 0 1 0 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTACC........................................................................................... 22 1 1 14.00 14 11 3 0 0 0 0 0 0
..................................................TATAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 14.00 14 1 13 0 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAAAC................................................... 22 1 1 14.00 14 4 10 0 0 0 0 0 0
..................................................TGCAGAATTCCTACGCTTTACC........................................................................................... 22 2 1 14.00 14 0 14 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTAAAC................................................... 22 1 1 14.00 14 11 2 0 0 1 0 0 0
..................................................TCTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 13.00 13 4 9 0 0 0 0 0 0
..........................................................................................CTAAGCGTTTGGATTCTGAAAC................................................... 22 1 1 13.00 13 0 13 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTCCC........................................................................................... 22 1 1 13.00 13 12 0 1 0 0 0 0 0
..................................................TTTAGAATTCCTACTCTTTACC........................................................................................... 22 1 1 12.00 12 10 2 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGTTTTACC........................................................................................... 22 1 1 12.00 12 3 9 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTG....................................................... 18 0 1 12.00 12 4 0 5 0 3 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGAAAC................................................... 22 1 1 11.00 11 0 9 2 0 0 0 0 0
..................................................TTTAGAATTCCTACACTTTACC........................................................................................... 22 1 1 10.00 10 5 5 0 0 0 0 0 0
..................................................TTTAGAATGCCTACGCTTTACC........................................................................................... 22 1 1 10.00 10 0 0 1 9 0 0 0 0
..................................................TTTAGAATCCCTACGCTTTACC........................................................................................... 22 1 1 10.00 10 6 3 0 1 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 9.00 9 0 9 0 0 0 0 0 0
..................................................TTTAGGATTCCTACGCTTTACC........................................................................................... 22 1 1 9.00 9 4 5 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACAA................................................. 24 2 1 9.00 9 8 0 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCAAAC................................................... 22 1 1 9.00 9 7 2 0 0 0 0 0 0
..................................................TTTAGAACTCCTACGCTTTACC........................................................................................... 22 1 1 9.00 9 5 3 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACT........................................................................................... 22 1 1 9.00 9 4 4 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCC.......................................................................................... 23 1 1 9.00 9 7 2 0 0 0 0 0 0
..................................................TTTAGACTTCCTACGCTTTACC........................................................................................... 22 1 1 8.00 8 6 2 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTCTACC........................................................................................... 22 1 1 8.00 8 3 4 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACG.................................................. 23 1 1 8.00 8 8 0 0 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAAA.................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAA.................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0 0
..................................................TTTATAATTCCTACGCTTTACC........................................................................................... 22 1 1 7.00 7 1 6 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTT....................................................... 18 1 1 7.00 7 6 0 1 0 0 0 0 0
..................................................TTTAGAATTCCTGCGCTTTACC........................................................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................... 24 0 1 7.00 7 1 1 3 0 2 0 0 0
..................................................TTCAGAATTCCTACGCTTTACCG.......................................................................................... 23 1 1 7.00 7 0 7 0 0 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTACCG.......................................................................................... 23 1 1 7.00 7 0 7 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAT.................................................... 21 1 1 6.00 6 5 0 1 0 0 0 0 0
.................................................CGTTAGAATTCCTACGCTTTACC........................................................................................... 23 2 1 6.00 6 0 6 0 0 0 0 0 0
..................................................TTGAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 6.00 6 1 1 4 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGACA.................................................... 21 1 1 6.00 6 2 0 4 0 0 0 0 0
..........................................................................................CAAAGCGTTTGCATTCTGAAAC................................................... 22 1 1 6.00 6 4 2 0 0 0 0 0 0
..................................................TTTAGAGTTCCTACGCTTTACC........................................................................................... 22 1 1 6.00 6 5 1 0 0 0 0 0 0
..............................................GATCTTTAGAATTCCTACGCTTTACC........................................................................................... 26 2 1 6.00 6 0 6 0 0 0 0 0 0
....................................................TAGAATTCCTACGCTTTACC........................................................................................... 20 0 1 6.00 6 1 5 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAT................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGG...................................................... 20 1 1 5.00 5 5 0 0 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGAAA.................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAG................................................... 22 1 1 5.00 5 4 0 0 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTT............................................................................................... 18 0 1 5.00 5 5 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGTTTCTGAAAC................................................... 22 1 1 5.00 5 0 0 5 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGAAAC................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0 0
..................................................TTTAAAATTCCTACGCTTTACC........................................................................................... 22 1 1 5.00 5 3 2 0 0 0 0 0 0
..........................................................................................CACAGCGTTTGGATTCTGAAAC................................................... 22 1 1 5.00 5 0 5 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAG.................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0
..................................................TGTAGAATTCCTCCGCTTTACC........................................................................................... 22 2 1 5.00 5 0 5 0 0 0 0 0 0
...............................ATTGTGGGCGCTGTAGAGT................................................................................................................. 19 0 1 5.00 5 3 0 1 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGACAC................................................... 22 1 1 5.00 5 2 0 2 0 1 0 0 0
..................................................ATTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 5.00 5 0 5 0 0 0 0 0 0
..................................................TTTAGAATTGCTACGCTTTACC........................................................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAC.................................................... 21 1 1 4.00 4 2 0 2 0 0 0 0 0
..........................................................................................CGAAGCGTTTGGATTCTGAAACA.................................................. 23 2 1 4.00 4 1 3 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAAAA................................................. 24 3 1 4.00 4 4 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTGTACC........................................................................................... 22 1 1 4.00 4 0 4 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0 0 0
..................................................TTTAGAATTCCTCCGCTTTACA........................................................................................... 22 2 1 4.00 4 0 4 0 0 0 0 0 0
..................................................TTTAGAATACCTACGCTTTACC........................................................................................... 22 1 1 4.00 4 0 0 0 4 0 0 0 0
................................................GTTTTAGAATTCCTACGCTTT.............................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAC..................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAAC................................................... 22 1 1 4.00 4 2 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAT..................................................... 20 1 1 4.00 4 3 0 1 0 0 0 0 0
..................................................TTTAGAATTCCTATGCTTTACC........................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGATTCTGAAAC................................................... 22 1 1 4.00 4 2 1 1 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGAAAC................................................... 22 1 1 4.00 4 2 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTTCC........................................................................................... 22 1 1 4.00 4 0 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTCC............................................................................................ 21 1 1 4.00 4 3 0 1 0 0 0 0 0
........................................................................GGCGCATACGAAATTCGG......................................................................... 18 1 1 4.00 4 0 4 0 0 0 0 0 0
................................................TCTTTAGAATTCCTACGCTTTACC........................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0
..................................................TTTAGAAGTCCTACGCTTTACC........................................................................................... 22 1 1 3.00 3 0 1 1 0 1 0 0 0
.................................................CTTTAGAATTCCTACGCTTTACCG.......................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTG............................................................................................. 20 1 1 3.00 3 2 0 1 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGAAA.................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0
..................................................TGTAGAATTCATACGCTTTACC........................................................................................... 22 2 1 3.00 3 0 3 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTAAAA.................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTAGATTCTGAAAC................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAAA.................................................... 20 0 1 3.00 3 1 0 1 1 0 0 0 0
...................................................TTAGAATTACTACGCTTTACC........................................................................................... 21 1 1 3.00 3 0 0 0 3 0 0 0 0
..................................................TTTAGTATTCCTACGCTTTACC........................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTATACC........................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCATTACC........................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0
..................................................TTTAGCATTCCTACGCTTTACC........................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACTT................................................. 24 2 1 3.00 3 3 0 0 0 0 0 0 0
...................................................TTAGAATTCCTACGCTTTAC............................................................................................ 20 0 1 3.00 3 1 0 0 2 0 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAACA.................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTATC........................................................................................... 22 1 1 3.00 3 1 1 0 0 0 1 0 0
..........................................................................................CAAAGCGCTTGGATTCTGAAAC................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0
..................................................TTTAGAATTCGTACGCTTTACC........................................................................................... 22 1 1 3.00 3 1 1 0 0 0 1 0 0
..................................................TTTAGAATGCCTACGCTTTACCG.......................................................................................... 23 1 1 3.00 3 0 0 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTAAACT.................................................. 23 2 1 3.00 3 2 0 1 0 0 0 0 0
..................................................TTTAGAATTCATACGCTTTACCG.......................................................................................... 23 1 1 3.00 3 0 3 0 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGAAAC................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTG....................................................... 19 0 1 3.00 3 1 0 2 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAG.................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGTAAC................................................... 22 1 1 3.00 3 0 2 1 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAAACT.................................................. 23 2 1 3.00 3 3 0 0 0 0 0 0 0
................................................GTTTTAGAATTCCTACGCTTTA............................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGTAA.................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTTTGAAAC................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0
.............................................................................................AGCGTTTGGATTCTGAAACCC................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0
.........................................................................................TCAAAGCGTTTGGATTCTGAAA.................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGAAACT.................................................. 23 2 1 2.00 2 1 0 1 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGATTCTGA...................................................... 19 1 1 2.00 2 1 0 0 0 1 0 0 0
..................................................TTTGGAATTCCTACGCTTTACC........................................................................................... 22 1 1 2.00 2 0 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAGC................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCAAACA.................................................. 23 2 1 2.00 2 1 0 0 0 0 1 0 0
........................................................................GTAGCATACGAAATTCGG......................................................................... 18 1 1 2.00 2 1 1 0 0 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCGTTACC........................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGATTCTGAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAA............................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAAAATTCCTAAGCTTTACC........................................................................................... 22 2 1 2.00 2 0 0 1 0 1 0 0 0
.........................................................................................GCAAAGCTTTTGGATTCTGAAAC................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAACC................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTCGGATTCTGAAA.................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTCACC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTCTGGATTCTGAAAC................................................... 22 1 1 2.00 2 0 1 0 1 0 0 0 0
..................................................TTTAGAATTCCTAGGCTTTACC........................................................................................... 22 1 1 2.00 2 1 0 0 0 0 0 1 0
.....................................................................................TTCGGCAAAGCGTTTGGATTCTGAAAC................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATCCCTACGCTTTAC............................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0 0 0
...............................................ATCTTTAGAATTCCTACGCTTTACC........................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGGTTCTGAAAC................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAT.................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATTCCAACGCTTTACC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGTTTCTGAAACA.................................................. 23 2 1 2.00 2 0 0 1 0 1 0 0 0
..................................................TTTAGAAATCCTACGCTTTACC........................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0
....................................................................................ATTCGGCAAAGCGTTTGGATTCTGAAAC................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAAACC.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGTGTTTGGATTCTGAAAC................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAAAC.................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0
................................TTGTGGGCTCTGTAGAGT................................................................................................................. 18 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAAAACA.................................................. 23 2 1 2.00 2 1 1 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGATTTACC........................................................................................... 22 1 1 2.00 2 0 0 1 0 1 0 0 0
..........................................................................................CGAAGCGTTTGGATCCTGAAAC................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGGTTCTGAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTCAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0
..................................................TTTAGAATTCCTACCCTTTACCG.......................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0
..................................................TTTAGAATCCCTACGCTTTACCG.......................................................................................... 23 1 1 2.00 2 0 0 0 1 0 1 0 0
..........................................................................................CAAAGCTTTTGGATTCTGAA..................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACG........................................................................................... 22 1 1 2.00 2 0 1 0 1 0 0 0 0
..........................................................................................CAAAGCCTTTGGATTCTGAAAC................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0
.........................................................................................GCATAGCGTTTGGATTCTGAAAC................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAAT.................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGTTTCTGAAA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTCAAAC.................................................. 23 3 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................AATTCGGCAAAGCGTTTGGATTCTGAAA.................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTGTGGATTCTGAAAC................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0
..................................................TTTCGAATTCCTACGCTTTACC........................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0
.........................................................................................GGAAAGCGTTTGGATTCTGAAAC................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAA.................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................AGCGTTTGGATTCTGAAA.................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTAAGCTTTACC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAACCGTTTGGATTCTGAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGAA..................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGA...................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................CAAATCGTTTGGATTCTGAAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................CGTAGAATTCCTACGCTTTACC........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................CTTTAGAATTCCTACGCTTTAC............................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................CAAAGCCTTTGGATTCTGAAACT.................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGGTTCTGAAAC................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTACC............................................................................................ 21 2 7 1.86 13 7 6 0 0 0 0 0 0
..................................................TTTAGACTTCCTACGCTTTACCG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACTCTTTAC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGA...................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTTAGAATTCTTCCGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTTAGAATGCCTACGATTTAAC........................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTC............................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAGAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTGAGTATTCATACGCTTTACC........................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CCAAGCGTTTGGTTTCTGAAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAAAA.................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGAAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGACATCA................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTAC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
................................TTGTGGGCGCTGTAGAGG................................................................................................................. 18 1 2 1.00 2 1 0 1 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGAAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................AAAAGCATTTGGATTCTGAAA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTCCGCGTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTCAGAATTCCTACGCTTTACAC.......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................AGCGTTTGGATTCTGAAAC................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTCGGATTCTGCACC................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATCCTGAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CACTGCGTTTGGATTCTGAAAC................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGGGTTTGGATTCTGAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTCCGCTTTACCG.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGATTGGATTCTGAAAA................................................... 22 2 2 1.00 2 0 2 0 0 0 0 0 0
..........................................................................................CAAAGCGTTAGGATTCTGAAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTGCC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGAGTCTGAAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTGC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTTCGCTTTACC........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................AGCGTTTGGATTCTGAAACC.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCCTTTGGATTCTGAAAA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGCAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGATTTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAACGCGTTTGGATTCTGAAAC................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGAAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGCATTCATACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
..................................................TTTAGGAGTCCTACGCGTTACC........................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................AGAATTCCTACGCTTTACC........................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTTAGAGTTCATACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................GCAAAGAGTTTGGATTCTGAAAC................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCTTTTGGATTCTGAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGAATCTGAAAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGAAACT.................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGA...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGAAAA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................AAAAGCGTGTGGATTCTGAAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGACTCTGAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGAACC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTAAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTCGGGATTCTGAAA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CAGAGCGGTTGGATTCTGAAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTACCG.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGCATTCTGAAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGTTTCTGAAACA.................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0
..................................................GTTAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0
..................................................TTCAGAATTCCTCCGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................CCAAAGCGTTTGGATTCTGAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................ATTTAGAATTCCTACGCTTTACC........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................TTAGAATTCCTACGCTTTAAC........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CCAGGCGTTTGGATTCTGAAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAG..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTCGGATTCTGAAAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGAATC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................GCAAAGCGATTGGATTCTGAA..................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................CATAGCGTTTGGATTCTGAAACT.................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGAA..................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAACT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTTAGAGTTCCTACTCTTTACC........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................CAATGCGTTTGGATTCTGAAACT.................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TGTATAATTCCTACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TCTATAATTCCTACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CTTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................GTCGCATACGAAATCCGG......................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................TGTAGAATTCCTATGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGATTCTGAAAT................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................CAAAGCGGTTGGTTTCTGAAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
...................................................TTAGAATTGCTACGCTTTACC........................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................CGAAGCTTTTGGATTCTGAAAC................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTTGATAAATAGTTTAGATACCGTCAATTTTTAACACCCGCGACATCTCAAAATCTTAAGGATGCGAAATGGCAGCGTATGCTTTAAGCCGTTTCGCAAACCTAAGACTTTGGGATGGCTAGGTAATGGTAATGGTATAATAATTGTTACTTTTGTGATTACC

************************************((((((..((((.((((((((((((..(((((((.((((((....)))....))).)))))))..)))))))))))).)))))).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M026

head

 V058

head
................................................CAAAGTCTTAAGGGTGCGAAAT............................................................................................. 22 2 1 1.00 1 1 0
....................................................................................................TCTTAGACTTTGGGATGGTTAG......................................... 22 3 1 1.00 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 X:10049075-10049237 - dya_14 confident CAACTATTTATCAAATCTATGGCAGTTAAAAAT--------------T-------------GTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCATATTATTAA----CAATGAAAA------------------------------CACTAATGG
droEre2 scaffold_4690:11188738-11188890 + der_28 confident CAAA----TATCAAATCTATGGCAATAATAAATT---------------------------GTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT------ATTATTAA----CAATGAAAA------------------------------CACTAATAG
droSec2 scaffold_37:439520-439670 - dse_27 confident C------TTATTAAATCTATGGCAATATTAAATT---------------------------GTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT------GTTATTAA----CAATGAAAA------------------------------CACTAATAG
droSim2 x:15031303-15031453 - dsi-mir-927 Known_mirbase C------TTATTAAATCTATAGCCATATTAAATT---------------------------GTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT------GTTATTAA----CAATGAAAA------------------------------CACTAATAG
dm3 chrX:15859946-15860106 - dme-mir-927 Known_mirbase CGATTATTAATTAAATCTATGGCAATATTAAATT---------------------------GTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT------GTTAAAAAAAAACAATACAAA------------------------------CACTAATAG
droEug1 scf7180000409111:14062-14222 + GAACTAT-----------------ATATTAAATTGTTATAAATGCA-G-------------CTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT------TTTATTAA----CAAT-AAAACAAT--------------CCATATT-----TACTAAT--
droBia1 scf7180000302126:1157205-1157333 + G----------------------------------TTAAAAACACACC-------------TTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC------TTGATTAA----CAAT-AATACA-------------------------------------
droTak1 scf7180000415169:54690-54856 + GG------TATC-----------------AAATTGTTATAAATGCACC-------------TTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT------TTAATTAA----CAAT-AAAACAAGGTTTTAATGGGTCAC-A---------AACTAATTG
droEle1 scf7180000491044:230814-230937 + --------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT------TTTATTCAA---AAAT-AAAACAAG----------------------------CTAAAAG
droRho1 scf7180000777033:165079-165211 + --------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT------TTTATTAA----CAAT-AAAACAAG--------------C-AA---GAGCGCATCAATCA
droFic1 scf7180000454038:1133622-1133779 - AAATAAGTTATCA--------GCACCATTGAATTGTTATAAATGT-CT-------------TTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT------TTTATTAA----CAA-GAAAA------------------------------AACAAA---
droKik1 scf7180000302230:275977-276065 - ---------------------------------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGT------------------------------------------------------------------------
droAna3 scaffold_13250:3108672-3108761 + dan_16 confident ---------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATT-----------------------------------------------------------------------
droBip1 scf7180000393580:5805-5893 - ---------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATT-----------------------------------------------------------------------
dp5 Unknown_group_79:17439-17532 + dps-mir-927 Known_mirbase AGATAGATA-----------------------A--------------C-------------GAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA---------------------------------------------------------------------------------
droPer2 scaffold_192:48566-48659 + dpe_29 confident AGATAGATA-----------------------A--------------C-------------GAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA---------------------------------------------------------------------------------
droWil2 scf2_1100000004590:2521620-2521694 - dwi_12 confident ----------------------------------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATC-------------------------------------------------------------------------------
droVir3 scaffold_12970:3343546-3343666 - dvi-mir-927 Known_mirbase AATTATTTTGTTAAATTTAT-----------------CTAAAGGCT-TTTAACTTTTAATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------
droMoj3 scaffold_6473:7790782-7790858 - --------------------------------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------
droGri2 scaffold_15203:10526917-10526997 + A-------------------------------C--------------C-------------GTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CAACTATTTATCAAATCTATGGCAGTTAAAAAT--------------T-------------GTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCATATTATTAA----CAATGAAAA------------------------------CACTAATGGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................22117059.001705911576305471274109266160100
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2212983.00298317123810051336136430000
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................2112019.002019189742021567130100
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................2111189.001189101834782144210000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................221887.0088786401501430000
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................231637.0063737324215116800000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................231377.00377342010031750000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231368.0036826821261146230000
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................201256.0025622716061420000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................221224.002242091503420000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................231119.001193807901100000
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................191116.001161011002930000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................211116.001161131001100000
...................................................................................................GTCGCA-TACGAAATTCGG...........................................................................................................18190.0090780821100000
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21144.00447221220100000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................23127.0027250100100000
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................22126.0026144700100000
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................20121.0021181000200000
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21119.001994230010000
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19118.0018180000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................23117.0017140100200000
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22117.0017201401000000
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................19116.0016160000000000
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20116.0016102102100000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................23115.0015140000100000
................................T--------------T-------------GTGGGCGCTGTAGAGT....................................................................................................................................................18114.0014110001200000
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................20114.0014130000100000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18112.001240003500000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................2419.00980000100000
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2219.00940400100000
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2319.00970200000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................2318.00880000000000
......................................................................................................................CAAAGCGTTTGGATTCTT.........................................................................................1817.00760000100000
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................2417.00710102300000
......................................................................................................................CAAAGCGTTTGGATTCTGAAT......................................................................................2116.00650000100000
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2016.00610500000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................2216.00660000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGG........................................................................................2015.00550000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAG.....................................................................................2215.00540001000000
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1815.00550000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAG......................................................................................2115.00550000000000
...............................AT--------------T-------------GTGGGCGCTGTAGAGT....................................................................................................................................................1915.00530001100000
......................................................................................................................CAAAGCGTTTGGATTCTGAAC......................................................................................2114.00420000200000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA...................................................................................2414.00440000000000
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................2314.00430100000000
...........................................................................GTTTTAGAATTCCTACGCTTT.................................................................................................................................2114.00440000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAC.......................................................................................2014.00440000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAT.......................................................................................2014.00430000100000
.............................................................................TTTAGAATTCCTACGCTTTG................................................................................................................................2013.00320000100000
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2013.00311000100000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACTT...................................................................................2413.00330000000000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2013.00312000000000
........................................................................................................................AAGCGTTTGGATTCTGAAACA....................................................................................2113.00330000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTG.........................................................................................1913.00310000200000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAG......................................................................................2213.00330000000000
...........................................................................GTTTTAGAATTCCTACGCTTTA................................................................................................................................2213.00330000000000
.........................................................................................................................AGCGTTTGGATTCTGAAACCC...................................................................................2113.00330000000000
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................2112.00220000000000
.................................................................................................................TTCGGCAAAGCGTTTGGATTCTGAAAC.....................................................................................2712.00220000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAT......................................................................................2212.00220000000000
................................................................................................................ATTCGGCAAAGCGTTTGGATTCTGAAAC.....................................................................................2812.00220000000000
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................2212.00201100000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAT....................................................................................2312.00220000000000
...............................................................................................................AATTCGGCAAAGCGTTTGGATTCTGAAA......................................................................................2812.00220000000000
........................................................................................................................AAGCGTTTGGATTCTGAAA......................................................................................1912.00220000000000
.........................................................................................................................AGCGTTTGGATTCTGAAA......................................................................................1812.00220000000000
.............................................................................TTTAGAATTCCTACGCTC..................................................................................................................................1811.00110000000000
........................................................................................................................AAGCGTTTGGATTCTGAAAAA....................................................................................2111.00110000000000
................................T--------------T-------------GTGGGCGCTGTAGAGG....................................................................................................................................................1821.00210000100000
.........................................................................................................................AGCGTTTGGATTCTGAAAC.....................................................................................1911.00110000000000
.........................................................................................................................AGCGTTTGGATTCTGAAACC....................................................................................2011.00110000000000
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1911.00100100000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAC.......................................................................................2111.00110000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAC......................................................................................2211.00110000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAG.......................................................................................2111.00110000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAA.......................................................................................1911.00110000000000
droEre2
CAAA----TATCAAATCTATGGCAATAATAAATT---------------------------GTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT------ATTATTAA----CAATGAAAA------------------------------CACTAATAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2215174.0051746191261167986029690
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................221931.00931441588031395790
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231791.00791631611566990
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................211562.00562463435734370
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................231256.00256321721141900
...................................................................................................GTGGCA-TACGAAATTCGG...........................................................................................................181233.002331061012150
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................211171.001711174171410
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................22185.008502342740
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20180.008020103740
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................23171.007101001690
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18156.005610100540
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................22156.005610503470
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21145.004537500030
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19144.004420201390
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................23144.0044011741210
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20140.004031200340
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22128.002804010230
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................23117.001700000170
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................24116.001610103110
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................23115.001520000130
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21115.00154010190
......................................................................................................................CAAAGCGTTTGGATTCTGT........................................................................................19114.001400100130
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................23112.001200101100
...................................................................................................GTGGCA-TACGAAATTCGGT..........................................................................................................19111.00110002090
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................21110.00101000180
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................2018.0080000170
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2018.0082300030
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................1918.0080000080
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................2217.0070000160
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................2315.0052000030
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2215.0054000010
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................2415.0050000140
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................2214.0040000040
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2014.0043000010
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................2113.0030001020
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1813.0030000030
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................2013.0030001020
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACA....................................................................................2413.0030000120
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................2312.0020100010
......................................................................................................................CAAAGCGTTTGGATTCTGAAAG.....................................................................................2212.0020010010
......................................................................................................................CAAAGCGTTTGGATTCTGAAT......................................................................................2112.0020000020
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2012.0020000110
......................................................................................................................CAAAGCGTTTGGATTCTGAAG......................................................................................2112.0020000110
......................................................................................................................CAAAGCGTTTGGATTCTGAAAACA...................................................................................2411.0010000010
.......................................................................................................................AAAGCGTTTGGATTCTGA........................................................................................1811.0010000010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAG......................................................................................2211.0010000010
......................................................................................................................CAAAGCGTTTGGATTCTGTT.......................................................................................2011.0010000010
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAT...................................................................................2411.0010000010
.......................................................................................................................AAAGCGTTTGGATTCTGAAACT....................................................................................2211.0010000010
......................................................................................................................CAAAGCGTTTGGATTCTGAAATA....................................................................................2311.0010000010
................................TT---------------------------GTGGGTGCTGCAGAGT....................................................................................................................................................1811.0010000010
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2311.0010000010
.......................................................................................................................AAAGCGTTTGGATTCTGAA.......................................................................................1911.0010000010
...................................................................................................GTGGCA-TACGAAATTCGT...........................................................................................................1811.0010000010
...........................................................................................................................CGTTTGGATTCTGAAACA....................................................................................1821.0020000020
......................................................................................................................CAAAGCGTTTGGATTCTT.........................................................................................1811.0010000010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................2311.0010000100
.............................................................................TTTAGAATTCCTACGCTTAC................................................................................................................................2011.0010000010
..............................................................................TTAGAATTCCTACGCTTTA................................................................................................................................1911.0010000010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAG.....................................................................................2311.0010000010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACAA...................................................................................2511.0010000010
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................2211.0011000000
droSec2
C------TTATTAAATCTATGGCAATATTAAATT---------------------------GTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT------GTTATTAA----CAATGAAAA------------------------------CACTAATAGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2211367.0013672712684986
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................221750.007502956229436
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231368.0036832371271
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................211175.001751511158
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................211150.0015032017110
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................231147.0014734013100
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19154.005434047
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20139.003901335
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................22138.0038241121
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................23133.003311238
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................22129.002911522
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................23123.002300419
...................................................................................................GTCGCA-TACGAAATTCGG...........................................................................................................18118.001800108
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20116.001611014
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21116.001614002
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................20114.001403110
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21114.00144046
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18113.001300013
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................21112.001201110
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24112.001200012
......................................................................................................................CAAAGCGTTTGGATTCTGT........................................................................................19110.00100109
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................2318.0080107
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2014.0043001
.....................................................................................................................GCAAAGCGTTTGGATTCTG.........................................................................................1914.0040004
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................2314.0040112
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................2213.0031011
..............................AATT---------------------------GTGGATGCTGTAGAGT....................................................................................................................................................2013.0030003
................................TT---------------------------GTGGATGCTGTAGAGT....................................................................................................................................................1812.0020020
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................2412.0020002
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................2312.0020011
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................2212.0020020
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................1912.0020002
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAT......................................................................................2212.0020011
.......................................................................................................................AAAGCGTTTGGATTCTGAAAAA....................................................................................2211.0010001
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2311.0011000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACA....................................................................................2411.0010001
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2311.0011000
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2011.0010001
...........................................................................................................................CGTTTGGATTCTGAAACA....................................................................................1811.0010001
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................2211.0011000
.............................................................................TTTAGAATTCCTACGCTTTACCGTT...........................................................................................................................2511.0010001
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................2311.0010001
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1811.0010001
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................2211.0010001
......................................................................................................................CAAAGCGTTTGGATTCTGAAG......................................................................................2111.0010001
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACT....................................................................................2411.0010001
...................................................................................................GTCGCA-TACGAAATTCGT...........................................................................................................1811.0010001
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................2211.0010001
......................................................................................................................CAAAGCGTTTGGATTCTGTT.......................................................................................2030.3310001
droSim2
C------TTATTAAATCTATAGCCATATTAAATT---------------------------GTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT------GTTATTAA----CAATGAAAA------------------------------CACTAATAGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................22159696.0059696552644391953342814801813143165115201023
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2217754.0077546461110107990453181702000010
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................2115516.0055165025104358009101070100010
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................2114354.004354415220463111221460601000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................2211771.00177113854034300100000200000
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................2311655.00165512651372211273102411100000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................2311066.0010669452279100014301100000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................221812.00812775112500000100000000
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................201575.00575520929001210220000000
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................181458.00458600001338500000000000
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................201294.0029486002419900201000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................211260.0026023651700100100000000
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................191250.0025015110049400000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................231230.0023020631700000120100000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................231187.0018713115110300000000000
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................191156.0015614203011000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................23184.00843204004800000000000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................23177.0077770000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................23174.0074701300000000000000
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21169.00692710113900000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................20151.0051490000100100000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................24135.0035272410000100000000
......................................................................................................................CAAAGCGTTTGGATTCTT.........................................................................................18131.0031310000000000000000
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................22128.0028220100500000000000
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................22127.0027222100000020000000
...................................................................................................GTGGCA-TACGAAATTCGG...........................................................................................................18127.0027406000000001700000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18125.0025900001400101000000
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23122.0022200200000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................23119.0019190000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................19119.0019190000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................23118.0018150300000000000000
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22116.0016150100000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAG......................................................................................21115.0015140100000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21114.0014140000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAT......................................................................................21113.0013130000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................22113.0013130000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTG.........................................................................................19111.0011100000100000000000
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................20110.001091000000000000000
.........................................................................................................................AGCGTTTGGATTCTGAAAC.....................................................................................19110.0010100000000000000000
.........................................................................................................................AGCGTTTGGATTCTGAAA......................................................................................18110.0010100000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAT.......................................................................................2019.00990000000000000000
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................2119.00990000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2018.00862000000000000000
..........................................................................................................................GCGTTTGGATTCTGAAAC.....................................................................................1818.00880000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2317.00760100000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGG........................................................................................2017.00770000000000000000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2016.00631000200000000000
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................2216.00660000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA...................................................................................2416.00660000000000000000
..............................................................................TTAGAATTCCTACGCTTTA................................................................................................................................1916.00600000600000000000
.....................................................................................................................GCAAAGCGTTTGGATTCT..........................................................................................1815.00540000100000000000
.............................................................................TTTAGAATTCCTACGCTTTACCGA............................................................................................................................2415.00550000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTT.........................................................................................1915.00550000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................2414.00430000100000000000
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2014.00420000200000000000
.............................................................................TTTAGAATTCCTACGCTTC.................................................................................................................................1914.00440000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGT........................................................................................1914.00440000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAG.......................................................................................2013.00330000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................2213.00330000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAT.....................................................................................2313.00330000000000000000
........................................................................................................................AAGCGTTTGGATTCTGAAA......................................................................................1913.00320100000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACTT...................................................................................2413.00330000000000000000
.............................................................................TTTAGAATTCCTACGCTTTAT...............................................................................................................................2112.00220000000000000000
..............................AATT---------------------------GTGGATGCTGTAGAGT....................................................................................................................................................2012.00220000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAG.....................................................................................2212.00220000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACCC...................................................................................2412.00200000200000000000
..................................................................................................................TCGGCAAAGCGTTTGGATTCTGAAA......................................................................................2512.00220000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAT...................................................................................2412.00220000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACAA.............................................................................................................................2312.00210000010000000000
...................................................................................................GTGGCA-TACGAAATTCGGA..........................................................................................................1912.00200100000000100000
.......................................................................................................................AAAGCGTTTGGATTCTGAAAA.....................................................................................2112.00220000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAACT....................................................................................2212.00220000000000000000
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1912.00200000200000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAT....................................................................................2312.00210100000000000000
............................................................................................................................GTTTGGATTCTGAAACA....................................................................................1712.00200000000002000000
.............................................................................TTTAGAATTCCTACGCTTA.................................................................................................................................1912.00220000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAACC....................................................................................2212.00200000200000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAC.......................................................................................2012.00220000000000000000
..........................................................................................................................GCGTTTGGATTCTGAAAA.....................................................................................1811.00110000000000000000
........................................................................................................................AAGCGTTTGGATTCTGAAAAA....................................................................................2111.00110000000000000000
.................................................................................................................TTCGGCAAAGCGTTTGGATTCT..........................................................................................2211.00101000000000000000
........................................................................................................................AAGCGTTTGGATTCTGAA.......................................................................................1811.00110000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAT......................................................................................2211.00110000000000000000
.............................................................................TTTAGAATTCCTACGCT...................................................................................................................................1711.00100000000001000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAG......................................................................................2211.00110000000000000000
.............................................................................TTTAGAATTCCTACGCTTTG................................................................................................................................2011.00110000000000000000
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2311.00110000000000000000
...................................................................................................................CGGCAAAGCGTTTGGATTCTGT........................................................................................2211.00110000000000000000
dm3
CGATTATTAATTAAATCTATGGCAATATTAAATT---------------------------GTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT------GTTAAAAAAAAACAATACAAA------------------------------CACTAATAGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................22179279.00792790000274400023517103229713140000000073921613881492182550520000000000000019001000052200000000000000000211398580210170011373779489820745412015104696582623005021191914576661737214766731483064341529198742120413519151273000000000200000010000000010000000000327443530295317407972146199514821570233447473924838119419000055660000000000000000310000000000302205017118265318453523812004526028306187101125638210000001429001470000010100000301000000000516581674147817627162300004202745100000100002000015125224818111503981106100
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................21110556.001055600007000001100443020000000082251682232743500000000000000100000000000000000000000000064323500000000004516115160124279000122031020511150114132804135116417519309213000000000000000000000000000000005000329180103351668923030318523326613588722810000063400000000000000001000000000000003511133054126000032014697100161660160000032004900100001100000000000000001121251263390000010000603112000010000000000313800000090122400
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2219236.009236000060010301003002000000000514915217201000000000000100000000044000000000000000000000019002300032725163136501572130001000051150235741011126116512410424200000000000010000000000000000000000536140202731538196111691616582972800000750000000000000000000000000000402220114102000001007848034110410032770140000011600380000001100000001000002102354310338285967811376164010016339191000002200013700044207379295245414337026100
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................2314783.00478300001030001010000011000000001519161451681200000000000000300000000010000000000000000000002400000001123302253533573090000000120100317633013082087196915912800000000000000000000000000000000000026434302241916234189211572123741354400000055200000000000000000000000000000001111104121001000025012113000635020000026007000000000000000000000000019251562021010000000220000020000000000115010340061012200
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................2314663.0046630000000000000010000000000000000000000000000000001000000000000000000000000000000020000000000300620000090000000000100011913010549030650000000000000000000000000000000000007491042001532025652312530000053000000000100000000000000000000000202000000047160081607288000182708000001270090000000011000003000000001327291203224512758287400007711574400000000000140002316946029513643067012400
......................................................................................................................CAAAGCGTTTGGATTCTGAAACATC..................................................................................2511817.00181700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001270547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................2111568.0015680000200000000000000000000000100000000000000000000000000021000000000000000000000000000000001600222000004200000100000000530100360401200000000000000000010100000000000000045370210061822111916320000030000000000000000000000000000010010000000000010001170310100003607000001800600010000000010010000000101338970780461392001003523637000020000000100184111951591003813600
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................2011149.001149000010000000000000000000000222372945110000000000000020000000000000000000000000000010600000000005003000001260000000100000014510001702333621000000000000000000000000000000000000391320435224235038312704177800000630000000000000000000000000000000000000020000000010001700019000000020040000000000000000000000000169245700000000000100000000000000000001400000050900
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................211697.00697000010000010000000000000000246443936110000000000000000000000000000000000000000000000100000000001002000100170000000000000113414045150132236000000000000000000000000000000000000255403655282539474571116410000022000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000010071100000000000000000000000000000100000000300
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................221625.0062500001010000001000000000000000000000000000000000001000000000000000000000000000000011000000000001110000001600000000000031107318071548017023220000000000000000000000000000000000001014010521122813116604053380000069000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000031230000000000000000000000000000000300000020200
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................221603.00603000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020010000000000000000001003010303074000000000000000000000000000000000000102009002151811222800000060000000000000000200000000000000000000000000000043002600023010000070030000001010000100000000001243216412361244000001601714002000000010000021234120703103500
...................................................................................................GTGGCA-TACGAAATTCGG...........................................................................................................181586.005860000000000000000010000000000000000000000000000000000000012000000000000000000000000000000000401190310001900000000010010560300450602500000000000000000000000000000000000082201400022060802240000000000000000000000020000000000000000000000000000082601190014501000005008000000000000000000000000057302150190920001003034000000000000000008101000360300
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................221466.004660000160000001000001000000000000000000000000000000000000000000000000000000000000001000000000002402111100003600010000000000122120261212006319000000000000000000000000000000000000102502044529938013191410000010000000000000000000000000000000000000100000010000000210001200000002001000000000000000000000000020120100000000000000000000000000000200000000200
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................191400.0040000000000000000000000000000001789405000000000000000000000000000000000000000000000010000000000000100000070000000000000012081000009371015000000000000000000000000000000000000155009110588102128620800000230000000000000000000000000000000000000000000000000000000003010000000030000000000000000000000000343140000000000001000000000000000000200000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................221399.00399000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000010100001200000000000000000100040401300000000000000001000000000000000000018230900270111130370000003000000000000000020000000000000000000000000013000010010000320000000400000000000010000000000000002319181904570000009176000000000000000018321321030400
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................201337.003370000100000000000000000000000200000000000000000000000000000000000000000000000000100000000000200400000000000000000000011000002010210000000000000000000000000000000000009120110241634224000003000000000000000000000000000000000000001000000004202400002001000006003000000000000000000000000031171710041210000080440000010000000000499901430120800
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................231273.002730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000002604001101020400000010000000001000000000000000000001000000000000000010002000013000000060020000000000000000000000000271010230624200000516200000000000000003106220130100700
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................231260.0026000000000000000000000000000000183010000000000000010000000000000000000000000000000000000000000000000000300000000001000010100020307600000000000000000000000000000000000089015000619011400000000000000000000000000000000000000000001000000000052001110000201000002003000000000000000000000001048680365140000040130000000000000000136104110110400
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................191252.00252000000000000000000000000000030020000000000000000000000000000000000000000000000000000000000000020000000000000000000000300003100201000000000000000000000000000000000000613041042103646900000500000000000000000000000000000000001000000000000410014000150000000200300000000000000000000000001645110111000000504000000000000100002541910043020600
.....................................................................................................................GCAAAGCGTTTGGATTCTG.........................................................................................191151.001510000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400320050021308000000000000000000000000000000000000000000000000000000000140000400000000001000000000000000000000000075514000000000000220000000000000000041100000180500
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACATC..................................................................................261146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010145000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................211126.0012600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000020001000000000000000000000000000000000000043020041000115000000400000000000000000000000000000000000000000000000000011000010000000300000000000000000000000000004116403000000003031000000101000100013231140080200
.............................................................................TTTAGAATTCCTACGCTTTACATC............................................................................................................................241116.0011600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................231114.00114000020000101000000000000000000000000000000000000100000000000000000000000000000000000000000030010100001400000000000000110100020203500000000000000000000000000000000000043020010020411000000400000000000000000000000000000000000001000002623000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
.............................................................................TTTAGAATTCCTACGCTTTACCTC............................................................................................................................241108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................211104.00104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000011000000000000001002031306086000000000000000000000000000000000000312010017000143141000005000000000000000000000000000000000000000000010000000100000000000000001000000000000000000000000000130000000000001000000000000000000100000000000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................201102.00102000000000010000000000000000305511010000000000000000000000000000000000000000000000000000000000000000000100000000000000210100000014000000000000000000000000000000000000021703332125601241000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000100
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................20196.009600000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000001000000200000000000000100000000310000000000000000000000000000000000000010011021021313000000100000000000000000000000000000000000000000000000000002000110000000000100000000000000000000000009105200100000002021000000000000000012120000050200
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................24194.0094000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000002001000000000000000000000000000000000000000000000840400140103013000000100000000000000000000000000000000000000000001230001001100000010000010000000000000000000000000000030403300000001001000000000000000001300000000200
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAT...................................................................................24193.009300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000006820000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21186.00860000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000007100401110506140000001000000000000000000000000000000000000000000000000000030000100000001001000000000000000000000000033220610000000103200000000000000000900100020100
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................22182.008200000000000000000000000000021000000000000000000000000000000000000000000000000000000000000002012000000000000000000000310000000201120000000000000000000000000000000000002304022825112310000012000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100001030100
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24182.0082000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000001000000004011000000000000000000000000000000000000050100010200020000001000000000000000000000000000000000000000000000000000200000100000000001000000000000000000000000010558000100000000000000000000000000010110000301200
.............................................................................TTTAGAATTCCTACGCTTTACCGATC..........................................................................................................................26177.007700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18176.0076000000000000000000000000000001010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000020000011000002000000000000000000000000000000000000000000000000000000000230000100000001000000000000000000000000000055121600010000000013000000000000000001200000030000
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................22169.006900001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000110100000000000000000000000000000000000000025022905110111071000004000000000000000000000000000000000000000000000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................23168.0068000000000000000000000000000000000000000000000000000000006700000000000000000000000000000000000010000000000000000000001100000000000000000000000000000000000000000000000110000000112000000000000000000000000000000000000000000000000000000000000120000000000002000000000000000000000000000020120203200000701000000000000000000800001070500
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................23167.00670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000006401000203040200000010000000000000000000000000000000000000000000110000000000000000000020000000000100000000000000000831200010000001022000000000000000001501010000000
.............................................................................TTTAGAATTCCTACGCTTTAT...............................................................................................................................21162.00620000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000100000000000000000000000111000101000330000000000000000000000000000000000000160011042903320000003000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................23161.0061000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000120001000000000000000000000000000007068000000000000000000000000000000000000770200100011020000003000000000000000000000000000000000000000000012000000000101200000000002000000000000000000000000000100000000000000000000000000000000000000000100
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................22154.00540000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001302001401010200000010000000000000000000000000000000000000000000210000001000000000000010000000000000000000000000000212401000000002020000000000000010011211000000100
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................20153.00530000000000000000010000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000020000000000000000000000000000000000000230122370900100000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................18146.0046000000000000000010000000000004010000000000000000000000000000000000000000000000000000000000000010000001000000000000001200000000210000000000000000000000000000000000000000210114015407000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................22146.00460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000002000000000000000000000000000000000000000003200000200010100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000212701010000003020000000000000000001200000010000
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................23146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000014000000000000000100000006000000000000000000000000000000000000000450211110201330000001000000000000000000000000000000000000100000032000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
...................................................................................................GTGGCA-TACGAAATTCGGT..........................................................................................................19142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000020000000000000000000000000020000100000000000000000000000000000000000000000101201520000000100000000000000000000410100040300
.............................................................................TTTAGAATTCCTACGCTTTATT..............................................................................................................................22140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000170010000000100000000000000000000000000000000000000000000000000000000000000120100023301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................23137.00370000300000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTAC................................................................................................................................20134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000160200063702120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000010000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000022420000000000000000000000000000000500001020100
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACA....................................................................................24122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000012130220000000000000000000000000000301000010000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................23122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000110100000100000000002000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000001100010000000000100000000000000000600000000100
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAT....................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200100000050000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000000000000000100000000000001000000000000000000400000000000
droEug1
GAACTAT-----------------ATATTAAATTGTTATAAATGCA-G-------------CTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTTATCTT------TTTATTAA----CAAT-AAAACAAT--------------CCATATT-----TACTAAT--SizeHit CountTotal NormTotal
No Reads
droBia1
G----------------------------------TTAAAAACACACC-------------TTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCCC------TTGATTAA----CAAT-AATACA-------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GG------TATC-----------------AAATTGTTATAAATGCACC-------------TTGGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTT------TTAATTAA----CAAT-AAAACAAGGTTTTAATGGGTCAC-A---------AACTAATTGSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTT------TTTATTCAA---AAAT-AAAACAAG----------------------------CTAAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------TGGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAATCCATTATCTT------TTTATTAA----CAAT-AAAACAAG--------------C-AA---GAGCGCATCAATCASizeHit CountTotal NormTotal
No Reads
droFic1
AAATAAGTTATCA--------GCACCATTGAATTGTTATAAATGT-CT-------------TTGGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTT------TTTATTAA----CAA-GAAAA------------------------------AACAAA---SizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGT------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
---------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2214574.004574372189738140362091
......................................................................................................................CAAAGCGTTTGGATTCTGGAAC.....................................................................................2212484.002484119288124842601321
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................211854.00854275017232294
......................................................................................................................CAAAGCGTTTGGATTCTGGAACA....................................................................................231389.003894202332328
......................................................................................................................CAAAGCGTTTGGATTCTGGAA......................................................................................211199.0019911725026103
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22189.008927430010
......................................................................................................................CAAAGCGTTTGGATTCTGGA.......................................................................................20187.008741021952
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................23183.00839910064
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21149.004928120009
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20148.004811103132
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................19148.00481007337
......................................................................................................................CAAAGCGTTTGGATTCTGGAACT....................................................................................23145.00451004337
......................................................................................................................CAAAGCGTTTGGATTCTGGAAA.....................................................................................22135.00352300327
.......................................................................................................................AAAGCGTTTGGATTCTGGAAC.....................................................................................21129.002912001214
.....................................................................................................................GCAAAGCGTTTGGATTCTGGAA......................................................................................22127.00273001023
...................................................................................................GTTGCA-TATGAAATTAGG...........................................................................................................18125.00250010024
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23125.00250232000
.............................................................................TTTAGAATTCCTACGCTTTACAA.............................................................................................................................23124.00240231000
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19116.00160301012
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................21114.00140120002
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24113.00130001012
.....................................................................................................................GCAAAGCGTTTGGATTCTGGA.......................................................................................21112.0012100407
......................................................................................................................CAAAGCGTTTGGATTCTGGAAT.....................................................................................22111.0011000317
.....................................................................................................................GCAAAGCGTTTGGATTCTGG........................................................................................20110.0010000019
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2218.008040004
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2017.007150010
......................................................................................................................CAAAGCGTTTGGATTCTGGAAAA....................................................................................2316.006200112
......................................................................................................................CAAAGCGTTTGGATTCTGGAACG....................................................................................2316.006001104
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2016.006230001
.......................................................................................................................AAAGCGTTTGGATTCTGGAACA....................................................................................2215.005000005
.............................................................................TTTAGAATTCCTACGCTTTAAA..............................................................................................................................2215.005041000
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................2214.004310000
.............................................................................TTTAGAATTCCTACGCTTTACAAA............................................................................................................................2414.004040000
.....................................................................................................................GCAAAGCGTTTGGATTCTGGAAA.....................................................................................2314.004000004
.............................................................................TTTAGAATTCCTACGCTTTACCGTT...........................................................................................................................2514.004000004
......................................................................................................................CAAAGCGTTTGGATTCTGGAG......................................................................................2114.004010201
......................................................................................................................CAAAGCGTTTGGATTCTGGT.......................................................................................2013.003000102
.............................................................................TTTAGAATTCCTACGCTTTACCAA............................................................................................................................2413.003030000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................1813.003001002
.............................................................................TTTAGAATTCCTACGCTTTAAAA.............................................................................................................................2313.003030000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................2312.002010001
......................................................................................................................CAAAGCGTTTGGATTCTGGAAG.....................................................................................2212.002100001
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1812.002010100
...............................................................................TAGAATTCCTACGCTTTAC...............................................................................................................................1912.002110000
.............................................................................TTTAGAATTCCTACGCTTAC................................................................................................................................2012.002020000
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................2212.002200000
......................................................................................................................CAAAGCGTTTGGATTCTGGTT......................................................................................2111.001000100
......................................................................................................................CAAAGCGTTTGGATTCTGGC.......................................................................................2011.001000100
.........................................................................................................................AGCGTTTGGATTCTGGAAC.....................................................................................1911.001100000
......................................................................................................................CAAAGCGTTTGGATTCTGT........................................................................................1911.001000001
.....................................................................................................................GCAAAGCGTTTGGATTCTGGAG......................................................................................2211.001000001
.............................................................................TTTAGAATTCCTACGCTTTACCGTTGC.........................................................................................................................2711.001000100
..............................................................................TTAGAATTCCTACGCTTTA................................................................................................................................1911.001000001
......................................................................................................................CAAAGCGTTTGGATTCTGGAACAA...................................................................................2411.001000001
.....................................................................................................................GCAAAGCGTTTGGATTCTGGT.......................................................................................2111.001000001
.......................................................................................................................AAAGCGTTTGGATTCTGGAACAA...................................................................................2311.001100000
......................................................................................................................CAAAGCGTTTGGATTCTGGAAGA....................................................................................2311.001000100
.......................................................................................................................AAAGCGTTTGGATTCTGGA.......................................................................................1911.001000001
.....................................................................................................................GCAAAGCGTTTGGATTCTGGAAC.....................................................................................2311.001000001
droBip1
---------------------------------------------------------------GGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AGATAGATA-----------------------A--------------C-------------GAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA---------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................22139546.0039546272532482329337228299211011711197
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2218999.0089991867088962311232348417305869
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................2114676.004676459154529683616132557142
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................2111357.0013572651891183140311070
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................231659.00659215091343215022817
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................211449.00449021914204010902
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................231388.00388015413639071276
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231263.002630394315151381291
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................221151.0015102630783101210
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................231129.00129013272546019134
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................201127.001270279682100641
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................221115.001153240001191373
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................20192.0092063124010210
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20175.0075050426010147
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21175.0075045211110024
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................22171.0071078200030123
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23161.00610176270001010
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................20154.005408343000000
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19149.004905328260401
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................23148.004803442326024
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................22138.003802711000801
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24128.002801217160001
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................22122.002202212100311
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................23118.001801312000200
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19116.00160300220207
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................21116.00160914010010
...............................................................................TAGAATTCCTACGCTTTACCG.............................................................................................................................21114.001401211000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAA....................................................................................23112.00120400000800
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................22110.00100106000021
...................................................................................................GTTGCAAAACGAAATTCGG...........................................................................................................19110.00100320110003
.............................................................................TTTAGAATTCCTACGCTTTT................................................................................................................................2019.0090008010000
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2319.0090333000000
..............................................................................TTAGAATTCCTACGCTTTA................................................................................................................................1918.0080413000000
...............................................................................TAGAATTCCTACGCTTTAC...............................................................................................................................1918.0080601010000
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2018.0080300000005
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................2018.0080700000100
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2318.0080503000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................2118.0080100110131
..............................................................................TTAGAATTCCTACGCTTTACCA.............................................................................................................................2215.0050311000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................2415.0050300000200
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................2215.0050500000000
.............................................................................TTTAGAATTCCTACGCTTTACCGC............................................................................................................................2415.0050005000000
.............................................................................TTTAGAATTCCTACGCTTTACAA.............................................................................................................................2315.0050410000000
.................................................................................GAATTCCTACGCTTTACC..............................................................................................................................1815.0050500000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACCA...................................................................................2415.0050201010100
.............................................................................TTTAGAATTCCTACGCTTTACCGTTGC.........................................................................................................................2714.0040201000010
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT.....................................................................................2214.0040100110001
.............................................................................TTTAGAATTCCTACGCTTTACCGTAA..........................................................................................................................2614.0040310000000
.............................................................................TTTAGAATTCCTACGCTTC.................................................................................................................................1914.0040004000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACC....................................................................................2414.0040000000400
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAAA..................................................................................2514.0040400000000
...TAGATA-----------------------A--------------C-------------GAGGATATTGTAGTG.....................................................................................................................................................2313.0030000000030
.............................................................................TTTAGAATTCCTACGCTTTACCGA............................................................................................................................2413.0030200100000
........A-----------------------A--------------C-------------GAGGATATTGTAGTGT....................................................................................................................................................1913.0030110010000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA...................................................................................2413.0030200000100
..............................................................................TTAGAATTCCTACGCTTTACCGT............................................................................................................................2313.0030201000000
.............................................................................TTTAGAATTCCTACGCTTTACCAAA...........................................................................................................................2513.0030100000200
......................................................................................................................CAAAGCGTTTGGATTCTGAAACGAG..................................................................................2513.0030000000300
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1913.0030201000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACCTCT---------------------------------------------------------------------------------2613.0030000000300
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1813.0030002000100
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................2313.0030100000020
........................................................................................................................AAGCGTTTGGATTCTGAAA......................................................................................1913.0030300000000
.......TA-----------------------A--------------C-------------GAGGATATTGTAGTGT....................................................................................................................................................2012.0020010010000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACCC...................................................................................2412.0020000000020
...............................................................................TAGAATTCCTACGCTTTACCGA............................................................................................................................2212.0020200000000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................1812.0020200000000
droPer2
AGATAGATA-----------------------A--------------C-------------GAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTA---------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2212192.0021927185165237352310
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2211937.0019376681112542662978
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................211619.00619121212431101294
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................211425.004251972063713629
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231125.001252541176711
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................231100.00100314138161
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................23172.007238417193
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20160.006094013331
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19156.005695011301
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................23152.005223306182
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................23144.004415411383
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21137.00370340120
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................22136.00362500650
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24125.00250402181
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22122.00221201000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................20119.00190190000
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20119.0019071380
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23117.00170130130
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21117.0017080450
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18116.00160104110
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19111.0011110540
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................2117.007400111
.............................................................................TTTAGAATTCCTACGCTTTACCAA............................................................................................................................2416.006060000
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................2116.006131100
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................2216.006400110
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2015.005010040
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAA...................................................................................2415.005050000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................2315.005020120
.............................................................................TTTAGAATTCCTACGCTTTACAA.............................................................................................................................2315.005050000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................2314.004110020
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................2214.004040000
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2214.004010120
...................................................................................................GTTGCAAAACGAAATTCGG...........................................................................................................1914.004040000
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................2013.003110100
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1813.003300000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAAAA...................................................................................2413.003300000
......................................................................................................................CAAAGCGTTTGGATTCTGAAACCA...................................................................................2413.003020010
.......................................................................................................................AAAGCGTTTGGATTCTGA........................................................................................1812.002020000
.............................................................................TTTAGAATTCCTACGCTTTT................................................................................................................................2012.002010100
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2312.002100010
.......TA-----------------------A--------------C-------------GAGGATATTGTAGTGT....................................................................................................................................................2012.002001001
................................A--------------C-------------GAGGATATTGTAGTGT....................................................................................................................................................1812.002000020
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2012.002010010
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................1912.002200000
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................2012.002000011
......................................................................................................................CAAAGCGTTTGGATTCTGAT.......................................................................................2012.002000020
.....................................................................................................................GCAAAGCGTTTGGATTCTGTT.......................................................................................2111.001100000
.............................................................................TTTAGAATTCCTACGCTTTACCTGA...........................................................................................................................2511.001000010
..............................................................................TTAGAATTCCTACGCTTTACA..............................................................................................................................2111.001010000
......................................................................................................................CAAAGCGTTTGGATTCTGATC......................................................................................2111.001000010
.............................................................................TTTAGAATTCCTACGCTTTAT...............................................................................................................................2111.001000010
.............................................................................TTTAGAATTCCTACGCTTTACCGTAAA.........................................................................................................................2711.001010000
......................................................................................................................CAAAGCGTTTGGATTCTGT........................................................................................1911.001000010
..............................................................................................................AAATTCGGCAAAGCGTTTGGATTCT..........................................................................................2511.001000100
.......................................................................................................................AAAGCGTTTGGATTCTGAAACC....................................................................................2211.001000010
.............................................................................TTTAGAATTCCTACGCTTTACAT.............................................................................................................................2311.001010000
......................................................................................................................CAAAGCGTTTGGATTCTGAAC......................................................................................2111.001000010
.................................................................................GAATTCCTACGCTTTACC..............................................................................................................................1811.001000100
.............................................................................TTTAGAATTCCTACGCTTTACCGAAA..........................................................................................................................2611.001010000
.............................................................................TTTAGAATTCCTACGCTTAC................................................................................................................................2011.001010000
..............................................................................TTAGAATTCCTACGCTTTACCAAA...........................................................................................................................2411.001010000
.............................................................................TTTAGAATTCCTACGCTTTACCAAA...........................................................................................................................2511.001010000
.........................................................................................................................AGCGTTTGGATTCTGAAAC.....................................................................................1911.001100000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................2311.001100000
droWil2
----------------------------------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATC-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................22161392.006139252811702217397119
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC.....................................................................................2217241.00724158937356371848
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................2116195.006195544482124644
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................2113375.0033753209111330112
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................2313240.00324020196731191032
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................221698.0069867500320
......................................................................................................................CAAAGCGTTTGGATTCTGAAACT....................................................................................231572.0057251822545
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC.....................................................................................231565.00565441425068
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................201333.0033327914742
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................231312.003123041016
......................................................................................................................CAAAGCGTTTGGATTCTGAAACC....................................................................................231228.0022819140429
......................................................................................................................CAAAGCGTTTGGATTCTGAAACA....................................................................................231172.0017276162069
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................231115.001151054006
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................211113.0011335610215
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20195.00956050327
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19192.00926812318
............................................................................TTTTAGAATTCCTACGCTTTAC...............................................................................................................................22190.0090812043
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................21181.0081771012
........................................................................................................................AAGCGTTTGGATTCTGAAAC.....................................................................................20180.0080751202
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................24176.0076510367
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC.....................................................................................21150.00502860610
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19148.0048451002
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22140.00401600024
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA.....................................................................................22137.0037281017
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23134.0034301102
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................18130.0030281010
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................22127.00271600011
...................................................................................................GTCGCC-TACGAAACTCGG...........................................................................................................18125.0025900124
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................23122.0022201001
......................................................................................................................CAAAGCGTTTGGATTCTGAAACG....................................................................................23118.001890018
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................22116.0016410002
.........................................................................................................................AGCGTTTGGATTCTGAAAC.....................................................................................19115.0015102003
......................................................................................................................CAAAGCGTTTGGATTCTGAT.......................................................................................20112.0012120000
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................20111.001123006
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................18111.001180012
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................21111.001170004
............................................................................TTTTAGAATTCCTACGCTTT.................................................................................................................................20110.001071002
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................19110.0010100000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2019.00927000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAA.....................................................................................2317.00740012
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................2017.00750002
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACT....................................................................................2416.00640002
............................................................................TTTTAGAATTCCTACGCTT..................................................................................................................................1916.00650001
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2016.00650001
......................................................................................................................CAAAGCGTTTGGATTCTGAAC......................................................................................2115.00540010
.............................................................................TTTAGAATTCCTACGCTTTACG..............................................................................................................................2215.00550000
..........................................................................................................................GCGTTTGGATTCTGAAAC.....................................................................................1814.00440000
......................................................................................................................CAAAGCGTTTGGATTCTGAAT......................................................................................2114.00440000
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1914.00411002
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACA....................................................................................2413.00310002
............................................................................TTTTAGAATTCCTACGCTTTA................................................................................................................................2113.00330000
......................................................................................................................CAAAGCGTTTGGATTCTGAAG......................................................................................2113.00330000
.............................................................................TTTAGAATTCCTACGCTTTACCGTT...........................................................................................................................2513.00310002
......................................................................................................................CAAAGCGTTTGGATTCTGAAAG.....................................................................................2213.00330000
......................................................................................................................CAAAGCGTTTGGATTCTT.........................................................................................1822.50550000
.............................................................................TTTAGAATTCCTACGCTTTACCGTCG..........................................................................................................................2612.00200002
.............................................................................TTTAGAATTCCTACGCTTTACCGA............................................................................................................................2412.00210001
.............................................................................TTTAGAATTCCTACGCTTAC................................................................................................................................2012.00210001
.......................................................................................................................AAAGCGTTTGGATTCTGAAACC....................................................................................2212.00210100
.......................................................................................................................AAAGCGTTTGGATTCTGAAACT....................................................................................2212.00210010
.....................................................................................................................GCAAAGCGTTTGGATTCTG.........................................................................................1912.00200002
......................................................................................................................CAAAGCGTTTGGATTCTGAAACAT...................................................................................2412.00220000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAACC....................................................................................2412.00220000
.............................................................................TTTAGAATTCCTACGCTTTT................................................................................................................................2012.00220000
.............................................................................TTTAGAATTCCTACGCTTTACCGG............................................................................................................................2412.00201001
.............................................................................TTTAGAATTCCTACGCTTTACCGC............................................................................................................................2412.00220000
.......................................................................................................................AAAGCGTTTGGATTCTGAAACA....................................................................................2212.00210010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAG......................................................................................2212.00220000
.......................................................................................................................AAAGCGTTTGGATTCTGA........................................................................................1812.00220000
.........................................................................................................................AGCGTTTGGATTCTGAAACC....................................................................................2012.00220000
......................................................................................................................CAAAGCGTTTGGATTCTGAATT.....................................................................................2211.00110000
droVir3
AATTATTTTGTTAAATTTAT-----------------CTAAAGGCT-TTTAACTTTTAATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2219222.0092227343352695720000000000420192108241287167045324600020741401000100712181100170122132020466448112874000272415491685455641117124
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................2111314.0013145464432110000000007649245377430864400002402200001000260000000000000231171319110044240500114931826
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------221676.006768423137000000000009327104111140000020000000000000111000000000001546626500010042000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................211577.00577184703101000000006905430810000002100000000000000000000000001122018300000104003000001
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................201104.001040182200000000007349950155000002000000000000000000000000000010009100000001000011000
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20169.006914920000000000030102200000000100000000000000000000000000000008000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................23155.00553930000000000090123307200000000000000000000000000000000005203000001000000000101
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................19147.004713110000000000000200103000000000100000000000000000000000004002000000000000000001
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21138.003800293000000000011011000100000000000000000000000000000000000001000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................23132.003202600000000000020100001000000000000000000000000000000000001000000000000000000010
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19124.002401800000000000020000000100000000000000000000000000000000000002100000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................23117.00170100000000000000113100000000000000000000000000000000000000002000010300001001002
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22114.00140420000000000000010001000000000000000000000000000000000001000000001000000001021
......................................................................................................................CAAAGCGTTTGGATTCTT.........................................................................................18114.001401400000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................18112.001201100000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2318.0080311000000000000000000000000000000000000000000000000000000100000000000002000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAA.......................................................................................2117.0071500000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2016.0060122000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA-------------------------------------------------------------------------------------2216.0061400000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2115.0050401000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................GTCGTG-TCCGAAATTTGG...........................................................................................................1815.0050202000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2015.0050050000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................1815.0050110000000000000000100000000000000000000000000000000000000001000000000000000001
.............................................................................TTTAGAATTCCTACGCTTTAA...............................................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000000000000000000000010
......................................................................................................................CAAAGCGTTTGGATTCTGG........................................................................................1913.0031200000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2213.0030100000000000000001000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................2213.0030100000000000000010000000000000000000000000000000000000000000000000001000000000
........................................................................................................................AAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTAGAATTCCTACGCTTTACCG.............................................................................................................................2213.0030000000000000010000000000000000000000000000000000000000000110000000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAAA......................................................................................2012.0021000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAT.......................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAC.......................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGC....................................................................................................................................1612.0020000000000000000000000000000000000000000000000000000000002000000000000000000000
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1912.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTT................................................................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2312.0020000000000000000000000000000000000000000000001000000000000100000000000000000000
............................................................................TTTTAGAATTCCTACGCTTTAC...............................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTA.................................................................................................................................1911.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAG.......................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAG......................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCAA............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................TTTAGAATTCCTACGCTTTACCGTAA..........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
.............................................................................TTTAGAATTCCTACGCTTTAG...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTAAA..............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTACCGTT...........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................TTAGAATTCCTACGCTTTACCT.............................................................................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAAAGCGTTTGGATTCTGAAC......................................................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................ATTTGGCAAAGCGTTTGGATTC...........................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AAAGCGTTTGGATTCTGAA.......................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTTG................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGT....................................................................................................................................1620.5010000000000000000000000000000000000000000000000000000000001000000000000000000000
.....TTTTGTTAAATTTAT-----------------CTAA........................................................................................................................................................................................1920.5010000000000000000000000000000010000000000000000000000000000000000000000000000000
...TATTTTGTTAAATTTAT-----------------CTAAA.......................................................................................................................................................................................2220.5010000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................TTTAGAATTCCTACGCTTC.................................................................................................................................1920.5010100000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................2214709.004709109452219392289656
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------221752.007526184810548248
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................211321.0032187328411575
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................211143.00143111000311
......................................................................................................................CAAAGCGTTTGGATTCTGAAA......................................................................................21174.007462124086
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................20131.00318051251
......................................................................................................................CAAAGCGTTTGGATTCTGA........................................................................................19114.0014202325
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................23114.0014600080
......................................................................................................................CAAAGCGTTTGGATTCTGAA.......................................................................................20112.0012301215
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................20112.00121000020
.............................................................................TTTAGAATTCCTACGCTTTACA..............................................................................................................................22110.0010000370
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2018.008400040
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2118.008700010
.............................................................................TTTAGAATTCCTACGCTTT.................................................................................................................................1917.007101410
.............................................................................TTTAGAATTCCTACGCTTTACCC.............................................................................................................................2315.005300110
.............................................................................TTTAGAATTCCTACGCTTTACCA.............................................................................................................................2313.003100200
......................................................................................................................CAAAGCGTTTGGATTCTGAAAA-------------------------------------------------------------------------------------2213.003000012
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAA......................................................................................2213.003000201
................................................................................AGAATTCCTACGCTTTACC..............................................................................................................................1912.002100010
.............................................................................TTTAGAATTCCTACGCT...................................................................................................................................1712.002000200
........................................................................................................................AAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2012.002100010
...................................................................................................GTCGTA-TACGCAATTTGG...........................................................................................................1812.002000020
......................................................................................................................CAAAGCGTTTGGATTCTGAAAT-------------------------------------------------------------------------------------2212.002000200
..............................................................................TTAGAATTCCTACGCTTTA................................................................................................................................1912.002200000
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2312.002100100
...............................................................................TAGAATTCCTACGCTTTACA..............................................................................................................................2011.001000010
.................................................................................GAATTCCTACGCTTTACC..............................................................................................................................1811.001000010
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1811.001000100
.............................................................................TTTAGAATTCCTACGCTTTACCGGA...........................................................................................................................2511.001000010
......................................................................................................................CAAAGCGTTTGGATTCTG.........................................................................................1811.001000100
............................................................................TTTTAGAATTCCTACGCTTTAC...............................................................................................................................2211.001000010
.........................................................................TCGTTTTAGAATTCCTACGCTTTAC...............................................................................................................................2511.001100000
.............................................................................TTTAGAATTCCTACGCTTTACCT.............................................................................................................................2311.001100000
...............................................................................TAGAATTCCTACGCTTTAC...............................................................................................................................1911.001000010
.............................................................................TTTAGAATTCCTACGCTTTACT..............................................................................................................................2211.001000010
.....................................................................................................................GCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2311.001001000
.............................................................................TTTAGAATTCCTACGCTTTACCGTCGTA-.......................................................................................................................2811.001000100
.....................................................................................................................GCAAAGCGTTTGGATTCTGA........................................................................................2011.001001000
........................................................................................................................AAGCGTTTGGATTCTGAAA......................................................................................1911.001100000
.............................................................................TTTAGAATTCCTACGCTTTT................................................................................................................................2011.001001000
.............................................................................TTTAGAATTCCTACGCTTTACCGT............................................................................................................................2411.001000100
.............................................................................TTTAGAATTCCTACGCTTTAAA..............................................................................................................................2220.501000010
.............................................................................TTTAGAATTCCTACGCTTTATT..............................................................................................................................2220.501001000
droGri2
A-------------------------------C--------------C-------------GTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................TTTAGAATTCCTACGCTTTACC..............................................................................................................................221137.001371334
......................................................................................................................CAAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------22132.00322111
.............................................................................TTTAGAATTCCTACGCTTTAC...............................................................................................................................21112.0012111
..............................................................................TTAGAATTCCTACGCTTTACC..............................................................................................................................21110.0010100
.......................................................................................................................AAAGCGTTTGGATTCTGAAAC-------------------------------------------------------------------------------------2112.00220
...............................................................................TAGAATTCCTACGCTTTACC..............................................................................................................................2012.00220
......................................................................................................................CAAAGCGTTTGGATTCTGAAAG-------------------------------------------------------------------------------------2211.00101
............................................................................TTTTAGAATTCCTACGCTTTACC..............................................................................................................................2311.00110
.............................................................................TTTAGAATTCCTACGCTTTA................................................................................................................................2011.00110
...................................................................................................GTCGTA-TACGAAATTTGG...........................................................................................................1811.00110
.............................................................................TTTAGAATTCCTACGCTTTACCG.............................................................................................................................2311.00110
..............................................................................TTAGAATTCCTACGCTTTAC...............................................................................................................................2011.00110
.............................................................................TTTAGAATTCCTACGCTT..................................................................................................................................1811.00110

Generated: 10/20/2015 at 06:58 PM