ID:

dya_1294

 Coordinate:

X:1191747-1191821 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.5 -16.3

Flybase annnotation

CDS [Dyak\GE16685-cds]; exon [dyak_GLEANR_18083:4]; CDS [Dyak\GE16685-cds]; exon [dyak_GLEANR_18083:3]; intron [Dyak\GE16685-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------##################################################
TCCGCTTCCGCCTCCGCCAACGTCTTGCAGACGCAGGCCAGCACCAGCTAGTCCGCAGTGAAGAGGCGGTTCGCGCTAGTCGGGGGTCCTGCGGTCGAGAGCGATGACGGTGGCGATGGCGACAGTAATGGCGACAGCGACAGCGACATCATCTCGATAGTGGATATAGATGATG
*********************************************************((.......((..((((.((..(((.((...)).)))...)).))))...)).........))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
 V058
head
 M026
head
.............................................AGCTAGTCCGCAGTGAAGAGGC............................................................................................................ 22 0 1 3.00 3 2 1 0 0 0
................................................................................................GAGAGCGATGACGGTGGCGATGGC....................................................... 24 0 1 2.00 2 2 0 0 0 0
..................................................................................................GAGCGATGACGGTGGCGATGGC....................................................... 22 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................AGTAATGGCGACAGCGACAGCGACAT.......................... 26 0 1 1.00 1 0 1 0 0 0
.CCGCTTCCGCCTCCGCCAACGTCT...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..................................................................................................................GATGGCGACAGTAATGGCGAC........................................ 21 0 1 1.00 1 0 1 0 0 0
................................................TAGTCCGCAGTGAAGAGGC............................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.........................................................GTGAAGAGGCGGTTCGCGCTA................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................GACGGTGGCGATGGCGACA................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................GATGACGGTGGCGATGGCGACA................................................... 22 0 1 1.00 1 1 0 0 0 0
.................CAACGTCTTGCAGACGCAGGC......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
...............................................................................................CGAGAGCGATGACGGTGGCGATGGC....................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................ATCTCGATAGTGGATATAGATTAT. 24 1 1 1.00 1 1 0 0 0 0
.........................................................GTGAAGAGGAGGTTCGGG.................................................................................................... 18 2 6 0.17 1 0 0 0 1 0
........................................................................................................................................................CTCGATGTTGGATAAAGAT.... 19 3 20 0.10 2 0 0 0 0 2
...............................................................................................CGAGATCGTTGACGGTGTCG............................................................ 20 3 10 0.10 1 1 0 0 0 0

Anti-sense strand reads

AGGCGAAGGCGGAGGCGGTTGCAGAACGTCTGCGTCCGGTCGTGGTCGATCAGGCGTCACTTCTCCGCCAAGCGCGATCAGCCCCCAGGACGCCAGCTCTCGCTACTGCCACCGCTACCGCTGTCATTACCGCTGTCGCTGTCGCTGTAGTAGAGCTATCACCTATATCTACTAC
*******************************************************((.......((..((((.((..(((.((...)).)))...)).))))...)).........))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V058
head
 V052
head
..........................................TGGTCGATCAGACGCCATTT................................................................................................................. 20 3 3 0.33 1 1 0
..........................CGTCTGCGGCAGGTCGTG................................................................................................................................... 18 2 8 0.13 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 X:1191697-1191871 + dya_1294 TCCGCT---------------------TCCGCCTCCGCCAACGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------AGGC--------G--------------------------------------------G--T----TCGCGCTAGTCGGGGGTCCTGCG-GTCGA-------------------------------------GAGCGATGACGGTGGCGATGGCGACAGTAATG------------GCGACAGCGACAGCGACATCATCTC--GATAGTGGATATAGATGATG--------------------
droEre2 scaffold_4644:1269522-1269672 + TCCACT---------------------GCCGCCTCCGCCAACGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------AGGC--------G--------------------------------------------G--T----TCGCACTAGTCGGGGGTCCTGCG-GGCGA-------------------------------------G------------------AGC------GAGA------------GCGAGGGCGACAGCGACATCATCTC--GATAGTGGACATAGATGATG--------------------
droSec2 scaffold_10:1108937-1109076 + CCC---------------------------GCATCCACCAATGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------G--------------------------------------------G--T----TCGAACCAGTCGGGGGTCCTGCG-GACGA-------------------------------------A-----------------------------AA------------GCGAAAGCGACAGCGACATCATCTC--GATTGTGGACATAGATGATG--------------------
droSim2 x:1164688-1164826 + CCC---------------------------GCCTCCACCAATGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------G--------------------------------------------G--T----TCGAACCAGTCGGGGGTCCTGCG-GACGG-------------------------------------A------------------------------A------------GCGAAAGCGACAGCGACATCATCTC--GATTGTGGACATAGATGATG--------------------
dm3 chrX:1285554-1285692 + TCC---------------------------GCTTCCGCCAATGTGTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCCAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--T----TCGAACTAGTCGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------GCGAAAGCGACAGCGACATCATCTC--GATAGTGGACATAGATGATG--------------------
droEug1 scf7180000408973:82579-82716 - C----T---------------------TCCGCATCTGCTAACCTACTTCAAACGCAGGTC-AGCACCAGCTAGTCCACAGTGAA--------------------------------------------------------------------------------------A------------------GGGA--------G--------------------------------------------G--T----GTGCATTA---GAGGTTCCTCTA-GGCGA-------------------------------------C------------------------------G------------ATGGCGGAGACAGCGACATTATTTC--GATAGTTGACATAGATGATG--------------------
droBia1 scf7180000301760:3858409-3858550 + GCCGCC---------------------TCCACATCCGCCAACTTGCTGCAAACGCAGGCC-AGCACCAGCTAGTCCGCAGAGAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--C----GGCGAGCACCAGAGGGTCCTCCG-GGCGA-------------------------------------T---------------------------------------------GATGACGACAGCGACATCATCTC--TTTTGTGGACATCGACGATG--------------------
droTak1 scf7180000415289:470117-470234 + TCCACT------------------TCTGCCACCTCCGCCAGCTTGCTGCAAACGCAGGCC-AGCAGCAGCTAGTCCGAA-------------------------------------------------------------------------------------------A------------------GGCC--------T-------------------------------------------GGCT-C----------------CTCCTC-----------------------------------------------------------------------------------------------TTTGGACAGCGACATCATCTC--AATAGTGGACATAGACGATG--------------------
droEle1 scf7180000490996:109940-110060 + TCCGTT---------------------GCCGTCTCCGCCAACCTGCTGCAAACGCAGGCC-ACCACCAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------G-------------------------------------------------------------------------------GTCATCCA-GACGA----------------------------------------------------------------------------------TGGCGGCGACAGCGACATCATTTC--AATAGTGGACATAGATGATG--------------------
droRho1 scf7180000778087:100280-100434 + C--------------------------------TCCGCCAACGTGCTGCAATCGCAGGCC-ACCACTAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------A------------------GGGC--------G--------------------------------------------G--G----GTGCACTA---GGGAGTCCTCCA-GACGA-------------------------------------TGGCGATGACGTCGGCGACGGC------GATG------------GCGACGCCGATAGCGACATCATTTC--GATAGTGGACATAGATGATG--------------------
droFic1 scf7180000454072:1828113-1828233 - TCCTCG---------------------TCCGCCTCCGCCAACGTGCTGCAAACGCAGGCT-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGCC--------G--------------------------------------------G--G----GG----------------------GCCG----------------------------------------------------------------------------------GGGGCGACACCAGCGACATCATCTC--CATAGTGGACATAGATGATG--------------------
droKik1 scf7180000302621:228596-228794 + GCCGCCGCCGCAGTCGCCTCCTCTTCATCCGGATCCGCGAATGTTAAGCCAACGCAGGAC-AGCGGCAGCTAGTCCTCAGCGAAAGGGGGCGGCACTAAACTTGGGAATA------------------------------------------A-----------------T------------------GGCC--------T-------------------------------------------GGTG-G----------------GGATTTTATGGAGCGA-------------------------------------T---------ATTGAGAGCAGC------AGCA------------GCAGCAGCAGCAGCGACATTATCTC--CATTGTGGATATTGATGATG--------------------
droAna3 scaffold_13117:1831570-1831714 - TCC---------------------------GTATCCGCCAGTGTTCTGCAGAGCCAGGCC-AGCAGCAGCTAGTCCGCCGGGAA--------------------------------------------------------------------------------------T------------------GGAG--------A-------------TGATGGGT---------------------------G-------------CGGCGTTCTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGCCAGCGACAGCGACATCATCTC--CATAGTGGACATAGATGATGACG------------AC--G
droBip1 scf7180000396425:226839-226988 + TCCTCC---------------------TCTGTATCCGCCAGCGTTCTGCAGAGCCAGGCC-AGCAGCAGCTAGTCCGCCGGGAA--------------------------------------------------------------------------------------A------------------GGAG--------A-------------TGGTGGGT---------------------------G-------------CGGCGGCCTAGAG-G----AGGA---------------------------------------------------GGAC------GAGA------------ACGCCAGCGACAGCGACATCATCTC--CATAGTGGACATAGATGATGAT------------------
dp5 XL_group1a:4761733-4761972 - TCCTCT---------------------TCATCATCGGCTGGTGTCCTGCAGACGCAGACG-AGTAGTAGCTAGTCCGAAGAGGACGATGGCGATGATGGGGACGGGGGCGG----------AAGCAGGATCGTGATCGCAATTGGGAGCTCT-------------------TCGGATGAGGAGGAG---GA---------------------GGATGTTGATT---------------------------T----------------CGGTCTTGTG-G----ATGGCCA------------------------------------------------GGAC------AGCA------------GAGGCGGCAGCAGCGACATCATCTC--CATTGTCGATATCAATGATGATGATAATGACGAGGATCCT
droPer2 scaffold_50:508330-508483 - TGC----------------------------------------------AGGCGCACGCCCATGACCAGGT----GCCAGCAGGGAAA---CGCATTAAGCGCGTGAGCA------------------------------------------A-----------------C------------------G-------------------------------------------------------------------------------CCACCAAA-GACGA-------------------------------------CAGCGACGGCGACGGCGACGGCGACAGCGACG------------GCGACAGCGACAGCGACAACGCCTGATGATGATGGCGATGG-CGATG---------------AC--A
droWil2 scf2_1100000004963:369551-369754 - C-C---------------------------GCAGCTGCAGGTGCCATGCAGTCACAAACG-AGTGGAAGCTAGTCCAAAGCATTCGAGGGCGGCGATAAAAGAAAATTAGG-----------------------------------TGATCCCCGCTCACAAAGCACAGAATCAGATATA------------------------------------GAGGAAG---------------------------A----------------CGAAATACTA-G----AGGA---------------------------------------------------GTAC------GAAGAAGCCGAAATTAACAGTTCCACCAGTGACATACTATC--AATAGTGGATATTGATGATG--------------------
droVir3 scaffold_12970:4183174-4183429 + GCCAGC---------------------ACAGCCGCAGCGAGTGTGTTGCAAACGCAGTCA-AGCAGCAGCTAGTCCGAAGCGAACGATGGCGGTGACGACGATGACGACGA-----------------------------------------------------------------------CGACGACGACGACGGTGGCGGCGGCGATAATGATGACGACGACGATCAAGGCGCCACTGGCCTGCTG-AAAAT------------CGATGTCGAT-G----ATGAGCCTGGGCGTGTCGACAGCAGCAGCAGCAGC------------------------------AGCA------------GCGGTGGCGACAGCGACATCATTTC--CATCGTAGACATTGACGATG--------------------
droMoj3 scaffold_6473:8757344-8757476 + GCCG------------------------------CAGCGAGTGGGCTGCAAACGCAGTCG-AGCAGCAGCTAGTCCGAAGCGGACGGCGGCGGCGGCAGTGATGATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGATGAT-G-------A---------------------------------------------------TGAT------GATG------------ATGGTGGCGACGAC--------------------GACGACGACGACA--------------------
droGri2 scaffold_14853:8472588-8472884 + GCCAGC---------------------ACAGCGACAGTGAATGCATTGCAAACGCAGTCG-AGCAGCAGCTAGTCCGAAGCGAACGATGGCGGTGACGCTGATGATCCCGATCCCGATCCCGATCCCGACCCTGATCCCGATCTTGAAC-----------------------C---------CGATGCGGATATCGATGGCAGCGCAATCAATGACGATGCTG---------------------------T----------------CGATCTTGTC-G----ATGAATATGAAAGCGTCGACAGCAACAACAATAACAACAACAATAACAACATCAACAACGATAGCAACA------------TCAGCAGTAGCAGCGACATTATATC--CATCGTTGACATTGACGATGAT------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TCCGCT---------------------TCCGCCTCCGCCAACGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------AGGC--------G--------------------------------------------G--T----TCGCGCTAGTCGGGGGTCCTGCG-GTCGA-------------------------------------GAGCGATGACGGTGGCGATGGCGACAGTAATG------------GCGACAGCGACAGCGACATCATCTC--GATAGTGGATATAGATGATG--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................AGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------AGGC--------......................................................................................................................................................................................................................................2213.00301000020000
.........................................................................................................................................................................................................................................................................................GA-------------------------------------GAGCGATGACGGTGGCGATGGC.........................................................................................2412.00200000020000
................................................................................................................................................................................................................................................................................................................................GAGCGATGACGGTGGCGATGGC.........................................................................................2211.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................AGTAATG------------GCGACAGCGACAGCGACAT................................................2611.00101000000000
.CCGCT---------------------TCCGCCTCCGCCAACGTCT.................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................GATGGCGACAGTAATG------------GCGAC..............................................................2111.00101000000000
......................................................................TAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------AGGC--------......................................................................................................................................................................................................................................1911.00100000010000
...............................................................................GTGAA--------------------------------------------------------------------------------------G------------------AGGC--------G--------------------------------------------G--T----TCGCGCTA.........................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................GACGGTGGCGATGGCGACA.....................................................................................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................GATGACGGTGGCGATGGCGACA.....................................................................................2211.00100000010000
......................................CAACGTCTTGCAGACGCAGGC....................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
........................................................................................................................................................................................................................................................................................CGA-------------------------------------GAGCGATGACGGTGGCGATGGC.........................................................................................2511.00100000010000
droEre2
TCCACT---------------------GCCGCCTCCGCCAACGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------AGGC--------G--------------------------------------------G--T----TCGCACTAGTCGGGGGTCCTGCG-GGCGA-------------------------------------G------------------AGC------GAGA------------GCGAGGGCGACAGCGACATCATCTC--GATAGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................G--------------------------------------------G--T----TCGCACTAGTCGGGGGT................................................................................................................................................................2012.0020000110
...............................................................CACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------AGGC--------......................................................................................................................................................................................................................................2611.0010000010
...............................................................................................................................................................................................................................................................................CCTGCG-GGCGA-------------------------------------G------------------AGC------GAGA------------GCGAGGGC...........................................................2711.0010000010
....................................................................................................................................................................................................................................................................................................................................................GC------GAGA------------GCGAGGGCGACAGCGACATC...............................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................GA------------GCGAGGGCGACAGCGACAT................................................2111.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................CTC--GATAGTGGACATAGATG.......................2011.0010000100
droSec2
CCC---------------------------GCATCCACCAATGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------G--------------------------------------------G--T----TCGAACCAGTCGGGGGTCCTGCG-GACGA-------------------------------------A-----------------------------AA------------GCGAAAGCGACAGCGACATCATCTC--GATTGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................CATCTC--GATTGTGGACATAGAT........................2212.0020020
..................................CCACCAATGTCTTGCAGACGCA.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
................................................................................................................................................................................................................................................................................................................................................................................................ATCTC--GATTGTGGACATAGA.........................2011.0010010
...............................................................................................................................................................................................AC--------G--------------------------------------------G--T----TCGAACCAGTCGGGGGTCCTGC...........................................................................................................................................................2711.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................CTC--GATTGTGGACATAGATGA......................2111.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................AGCGACATCATCTC--GATTGTGGAC..............................2411.0011000
droSim2
CCC---------------------------GCCTCCACCAATGTCTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------G--------------------------------------------G--T----TCGAACCAGTCGGGGGTCCTGCG-GACGG-------------------------------------A------------------------------A------------GCGAAAGCGACAGCGACATCATCTC--GATTGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................GACAGCGACATCATCTC--GATTGTGGA...............................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CATCTC--GATTGTGGACATAGA.........................2111.00101000000000000000
..............................................................................AGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------G--------------------------------------------G--T----TCGAACCAGTCGGG...................................................................................................................................................................2811.00100010000000000000
...................................................................AGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------......................................................................................................................................................................................................................................2211.00100010000000000000
.....................................................................CTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGAC--------......................................................................................................................................................................................................................................2011.00100010000000000000
...............................................................................................................................................................................................................................................................CGAACCAGTCGGGGGTCCTGC...........................................................................................................................................................2111.00101000000000000000
dm3
TCC---------------------------GCTTCCGCCAATGTGTTGCAGACGCAGGCC-AGCACCAGCTAGTCCGCAGCCAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--T----TCGAACTAGTCGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------GCGAAAGCGACAGCGACATCATCTC--GATAGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................CAGCGACATCATCTC--GATAGTGGAC..............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GTCGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--T----TCGAACTAGTCGGG...................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..............................GCTTCCGCCAATGTGTTGCA.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGACAGCGACATCATCTC--GAT.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCCTGCG-GGCGA-------------------------------------A------------------------------A------------GCGAAAGCGA.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................GGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------GCG................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTAGTCGGGGGTCCTGCG-GGC......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------G..................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................CAGCGACATCATCTC--GATAGTGGA...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CGAACTAGTCGGGGGTCCTGCG-GGC......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCCTGCG-GGCGA-------------------------------------A------------------------------A------------GCGAAAGCGAC........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GTCCGCAGCCAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--T----.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------...................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CATCTC--GATAGTGGACATA...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GTCGGGGGTCCTGCG-GGCGA-------------------------------------A------------------------------A------------GC.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
C----T---------------------TCCGCATCTGCTAACCTACTTCAAACGCAGGTC-AGCACCAGCTAGTCCACAGTGAA--------------------------------------------------------------------------------------A------------------GGGA--------G--------------------------------------------G--T----GTGCATTA---GAGGTTCCTCTA-GGCGA-------------------------------------C------------------------------G------------ATGGCGGAGACAGCGACATTATTTC--GATAGTTGACATAGATGATG--------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGCC---------------------TCCACATCCGCCAACTTGCTGCAAACGCAGGCC-AGCACCAGCTAGTCCGCAGAGAA--------------------------------------------------------------------------------------G------------------GGGC--------G--------------------------------------------G--C----GGCGAGCACCAGAGGGTCCTCCG-GGCGA-------------------------------------T---------------------------------------------GATGACGACAGCGACATCATCTC--TTTTGTGGACATCGACGATG--------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCACT------------------TCTGCCACCTCCGCCAGCTTGCTGCAAACGCAGGCC-AGCAGCAGCTAGTCCGAA-------------------------------------------------------------------------------------------A------------------GGCC--------T-------------------------------------------GGCT-C----------------CTCCTC-----------------------------------------------------------------------------------------------TTTGGACAGCGACATCATCTC--AATAGTGGACATAGACGATG--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCCGTT---------------------GCCGTCTCCGCCAACCTGCTGCAAACGCAGGCC-ACCACCAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------G------------------G-------------------------------------------------------------------------------GTCATCCA-GACGA----------------------------------------------------------------------------------TGGCGGCGACAGCGACATCATTTC--AATAGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------------------TCCGCCAACGTGCTGCAATCGCAGGCC-ACCACTAGCTAGTCCGCAGTGAA--------------------------------------------------------------------------------------A------------------GGGC--------G--------------------------------------------G--G----GTGCACTA---GGGAGTCCTCCA-GACGA-------------------------------------TGGCGATGACGTCGGCGACGGC------GATG------------GCGACGCCGATAGCGACATCATTTC--GATAGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCTCG---------------------TCCGCCTCCGCCAACGTGCTGCAAACGCAGGCT-AGCACCAGCTAGTCCGCAGCGAA--------------------------------------------------------------------------------------G------------------GGCC--------G--------------------------------------------G--G----GG----------------------GCCG----------------------------------------------------------------------------------GGGGCGACACCAGCGACATCATCTC--CATAGTGGACATAGATGATG--------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCGCCGCCGCAGTCGCCTCCTCTTCATCCGGATCCGCGAATGTTAAGCCAACGCAGGAC-AGCGGCAGCTAGTCCTCAGCGAAAGGGGGCGGCACTAAACTTGGGAATA------------------------------------------A-----------------T------------------GGCC--------T-------------------------------------------GGTG-G----------------GGATTTTATGGAGCGA-------------------------------------T---------ATTGAGAGCAGC------AGCA------------GCAGCAGCAGCAGCGACATTATCTC--CATTGTGGATATTGATGATG--------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCC---------------------------GTATCCGCCAGTGTTCTGCAGAGCCAGGCC-AGCAGCAGCTAGTCCGCCGGGAA--------------------------------------------------------------------------------------T------------------GGAG--------A-------------TGATGGGT---------------------------G-------------CGGCGTTCTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGCCAGCGACAGCGACATCATCTC--CATAGTGGACATAGATGATGACG------------AC--GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................GCCAGCGACAGCGACATCAT.............................................2012.002200000
......................................CAGTGTTCTGCAGAGCCAGGCC-AGCAGC............................................................................................................................................................................................................................................................................................................................................................................2811.001000010
...............................................................................................................................................................................................................................................................................CTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGCCAGCGAC........................................................2711.001010000
..............................................................................................................................................................................................................................................................................TCTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGCCAGC...........................................................2511.001010000
........................................................................GTCCGCCGGGAA--------------------------------------------------------------------------------------T------------------GGAG--------A-------------TGAT....................................................................................................................................................................................................................2211.001010000
........................................................................................................................................................................................................................GATGGGT---------------------------G-------------CGGCGTTCTTGAG-G-------.................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................CTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGCCAGC...........................................................2411.001100000
...........................................................................................................................................................................................................................GGGT---------------------------G-------------CGGCGTTCTTGAG-G-------A---------------------------------------------------GG...........................................................................................2211.001100000
...............................................................................GGGAA--------------------------------------------------------------------------------------T------------------GGAG--------A-------------TGATGGGT---------------------------G-------------C......................................................................................................................................................................2111.001010000
.......................................................................AGTCCGCCGGGAA--------------------------------------------------------------------------------------T------------------GGAG--------A-------------T.......................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................CTTGAG-G-------A---------------------------------------------------GGAC------GGGA------------ACGC...............................................................2011.001000001
droBip1
TCCTCC---------------------TCTGTATCCGCCAGCGTTCTGCAGAGCCAGGCC-AGCAGCAGCTAGTCCGCCGGGAA--------------------------------------------------------------------------------------A------------------GGAG--------A-------------TGGTGGGT---------------------------G-------------CGGCGGCCTAGAG-G----AGGA---------------------------------------------------GGAC------GAGA------------ACGCCAGCGACAGCGACATCATCTC--CATAGTGGACATAGATGATGAT------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCCTCT---------------------TCATCATCGGCTGGTGTCCTGCAGACGCAGACG-AGTAGTAGCTAGTCCGAAGAGGACGATGGCGATGATGGGGACGGGGGCGG----------AAGCAGGATCGTGATCGCAATTGGGAGCTCT-------------------TCGGATGAGGAGGAG---GA---------------------GGATGTTGATT---------------------------T----------------CGGTCTTGTG-G----ATGGCCA------------------------------------------------GGAC------AGCA------------GAGGCGGCAGCAGCGACATCATCTC--CATTGTCGATATCAATGATGATGATAATGACGAGGATCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGATATCAATGATG....................1913.0030300000000
............................CATCATCGGCTGGTGTCCT................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................AATTGGGAGCTCT-------------------TCGGATGAGGA.........................................................................................................................................................................................................................................................2411.0010100000000
........................................................GACG-AGTAGTAGCTAGTCCGAAGAGGA...........................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.....................................................GCAGACG-AGTAGTAGCTAGTCC...................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................CCGAAGAGGACGATGGCGATGATGG............................................................................................................................................................................................................................................................................................................................................2511.0010000001000
..........................................................................................................GGCGG----------AAGCAGGATCGTGA........................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGTCGATATCAATGATGATGATAAT............2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................CATCTC--CATTGTCGATATCAATGATGAT..................2811.0010100000000
........................................................................................................................................CGCAATTGGGAGCTCT-------------------TCGGATGA............................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGATATCAATGATGAT..................2111.0010100000000
.....................................................GCAGACG-AGTAGTAGCTA.......................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................GATGAGGAGGAG---GA---------------------GGATGTTG...................................................................................................................................................................................................................2211.0010100000000
..............................................................GTAGTAGCTAGTCCGAAGA..............................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................GCAGACGCAGACG-AGTAGTAGCTAG......................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................A------------GAGGCGGCAGCAGCGACA.................................................1920.5010000100000
...............................................................................................................................................................................ATGAGGAGGAG---GA---------------------GGATG......................................................................................................................................................................................................................1860.1710100000000
..............................................................................................................................................................................GATGAGGAGGAG---GA---------------------GGAT.......................................................................................................................................................................................................................1870.1410000010000
droPer2
TGC----------------------------------------------AGGCGCACGCCCATGACCAGGT----GCCAGCAGGGAAA---CGCATTAAGCGCGTGAGCA------------------------------------------A-----------------C------------------G-------------------------------------------------------------------------------CCACCAAA-GACGA-------------------------------------CAGCGACGGCGACGGCGACGGCGACAGCGACG------------GCGACAGCGACAGCGACAACGCCTGATGATGATGGCGATGG-CGATG---------------AC--ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
C-C---------------------------GCAGCTGCAGGTGCCATGCAGTCACAAACG-AGTGGAAGCTAGTCCAAAGCATTCGAGGGCGGCGATAAAAGAAAATTAGG-----------------------------------TGATCCCCGCTCACAAAGCACAGAATCAGATATA------------------------------------GAGGAAG---------------------------A----------------CGAAATACTA-G----AGGA---------------------------------------------------GTAC------GAAGAAGCCGAAATTAACAGTTCCACCAGTGACATACTATC--AATAGTGGATATTGATGATG--------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................GTCCAAAGCATTCGAGGGCGGC.................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............................................................................................ATAAAAGAAAATTAGG-----------------------------------TGATCCCCGC...................................................................................................................................................................................................................................................................................2611.00100010
.....................................................................................................................................................................................................................................................................................................................................................C------GAAGAAGCCGAAATTAACAGTTCCACC........................................................2811.00100100
..............................................................................................................................................................................................................................................................................AATACTA-G----AGGA---------------------------------------------------GTAC------GAAGA..............................................................................2111.00100010
..........................................................................................................................................................................ATCAGATATA------------------------------------GAGGAAG---------------------------A----------------CGAAAT..............................................................................................................................................................2411.00100100
................................................................................................TAAAAGAAAATTAGG-----------------------------------TGATCCCCGC...................................................................................................................................................................................................................................................................................2511.00100010
............................................................................AAAGCATTCGAGGGCGGCGA...............................................................................................................................................................................................................................................................................................................................................2011.00100100
.................................................................GAAGCTAGTCCAAAGCATTCGAGGGC....................................................................................................................................................................................................................................................................................................................................................2611.00100100
.............................................................AGTGGAAGCTAGTCCAAAGC..............................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
GCCAGC---------------------ACAGCCGCAGCGAGTGTGTTGCAAACGCAGTCA-AGCAGCAGCTAGTCCGAAGCGAACGATGGCGGTGACGACGATGACGACGA-----------------------------------------------------------------------CGACGACGACGACGGTGGCGGCGGCGATAATGATGACGACGACGATCAAGGCGCCACTGGCCTGCTG-AAAAT------------CGATGTCGAT-G----ATGAGCCTGGGCGTGTCGACAGCAGCAGCAGCAGC------------------------------AGCA------------GCGGTGGCGACAGCGACATCATTTC--CATCGTAGACATTGACGATG--------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................CGATGTCGAT-G----ATGAGCCTGGGCGTC.....................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000002
........................................................................GTCCGAAGCGAACGATGGC....................................................................................................................................................................................................................................................................................................................................................1912.002000100000000000100000000000000000000000000000000000000000000000
......................................................................................ATGGCGGTGACGACGATGACGAC..................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GATCAAGGCGCCACTGGCCTGCT.......................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGCA------------GCGGTGGCGACAGCG....................................................1911.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................CGATGGCGGTGACGACGATGAC.....................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000010000000000000000000000000
...............................................................................GCGAACGATGGCGGTGAC..............................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................GTCGAT-G----ATGAGCCTGGGCGTGTC...................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................GACGACGACGATCAAGGCGCCAC................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
............................................................................GAAGCGAACGATGGCGGTGACGA............................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................GACGACGACGATCAAGGCGC...................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CAAGGCGCCACTGGCCTGCTG-AA...................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CGAT-G----ATGAGCCTGGGCGTGTCGA.................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................GATGACGACGA-----------------------------------------------------------------------CGACGAC..................................................................................................................................................................................................................................................18200.204300000000000000000000010000000000000000000000000000000000000000
.............................................................................................TGACGACGATGACGACGA-----------------------------------------------------------------------C........................................................................................................................................................................................................................................................1970.141000000000000000000000000000000000000100000000000000000000000000
..................................................................................................ACGATGACGACGA-----------------------------------------------------------------------CGACGAC..................................................................................................................................................................................................................................................20200.102010000000000000000100000000000000000000000000000000000000000000
.................................................................................................GACGATGACGACGA-----------------------------------------------------------------------CGAC.....................................................................................................................................................................................................................................................18200.102100000000000000000000000000000000000100000000000000000000000000
.............................................................................................TGACGACGATGACGACGA-----------------------------------------------------------------------.........................................................................................................................................................................................................................................................18100.101001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC------------------------------AGCA------------GCGG...............................................................19200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC------------------------------AGCA------------GCGGT..............................................................24110.091000000000000000000000000000000000000000000000000000000000001000
..............................................................................................GACGACGATGACGACGA-----------------------------------------------------------------------C........................................................................................................................................................................................................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
....................................................................................................GATGACGACGA-----------------------------------------------------------------------CGACGACGAC...............................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................CGATGACGACGA-----------------------------------------------------------------------CGACGACGAC...............................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGC------------------------------AGCA------------GCG................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
..............................................................................................GACGACGATGACGACGA-----------------------------------------------------------------------CGAC.....................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
....................................................................................................GATGACGACGA-----------------------------------------------------------------------CGACGACGA................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................................CGA-----------------------------------------------------------------------CGACGACGACGACGG..........................................................................................................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
droMoj3
GCCG------------------------------CAGCGAGTGGGCTGCAAACGCAGTCG-AGCAGCAGCTAGTCCGAAGCGGACGGCGGCGGCGGCAGTGATGATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGATGAT-G-------A---------------------------------------------------TGAT------GATG------------ATGGTGGCGACGAC--------------------GACGACGACGACA--------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................GGCAGTGATGATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GA....................................................................................................................................................................2311.001100000
.................................................................................................AGTGATGATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GAT...................................................................................................................................................................2120.501000001
................................................................................................................................................................................................................................................................................................................................................................................TGGCGACGAC--------------------GACGACGACGACA--------------------2320.501000010
......................................................................................................TGATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGA..............................................................................................................................................................21200.153000300
................................................................................................................................................................................................................................................................................ATGAT-G-------A---------------------------------------------------TGAT------GATG------------ATGG...............................................................19200.051010000
.......................................................................................................GATGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGAT.............................................................................................................................................................21200.051000010
.........................................................................................................TGATGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGATGAT-.........................................................................................................................................................22200.051000001
........................................................................................................................................................................................AT-------------------------------------------------------------------------------GATGATGATGAT-G-------A---------------------------------------------------TGAT------...................................................................................20200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................GACGAC--------------------GACGACGACGAC.....................18200.051100000
............................................................................................................TGA-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGATGAT-G-------A---------------------------------------------------T............................................................................................22200.051000001
..............................................................................................................A-----------------------------------------------------------------------TGAT-------------------------------------------------------------------------------GATGATGATGAT-G-------A---------------------------------------------------T............................................................................................20200.051000001
..........................................................................................................................................................................................................................................................................ATGATGATGAT-G-------A---------------------------------------------------TGAT------GAT................................................................................20200.051000001
.............................................................................................................................................................................................................................................................................ATGATGAT-G-------A---------------------------------------------------TGAT------GATG------------AT.................................................................20200.051000001
droGri2
GCCAGC---------------------ACAGCGACAGTGAATGCATTGCAAACGCAGTCG-AGCAGCAGCTAGTCCGAAGCGAACGATGGCGGTGACGCTGATGATCCCGATCCCGATCCCGATCCCGACCCTGATCCCGATCTTGAAC-----------------------C---------CGATGCGGATATCGATGGCAGCGCAATCAATGACGATGCTG---------------------------T----------------CGATCTTGTC-G----ATGAATATGAAAGCGTCGACAGCAACAACAATAACAACAACAATAACAACATCAACAACGATAGCAACA------------TCAGCAGTAGCAGCGACATTATATC--CATCGTTGACATTGACGATGAT------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................G----ATGAATATGAAAGCGTCGAC................................................................................................................................2112.00220

Generated: 05/18/2015 at 12:34 AM