ID:

dya_1277

 Coordinate:

v2_chrUh_004:294312-294462 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.1 -2.9 -2.8

Flybase annnotation

exon [dyak_GLEANR_11039:1]; CDS [Dyak\GE11042-cds]; intron [Dyak\GE11042-in]

Repeatable elements

NameClassFamilyStrand
Transib3_DPDNACMC-Transib+
mature
  1. dya_1277  v2_chrUh_004:294384-294410 +
  2. v2_chrUh_004:304135-304161 +
  3. dya_1278  v2_chrUh_004:320380-320406 +
star
  1. v2_chrUn_5833:1363-1386 +
  2. dya_1277  v2_chrUh_004:294354-294377 +
  3. v2_chrUh_004:304105-304128 +
  4. dya_1278  v2_chrUh_004:320350-320373 +
  5. v2_chrUh_004:327751-327774 +
  6. v2_chrUh_004:336867-336890 +
  7. v2_chrUh_004:350217-350240 +
  8. v2_chrUh_004:355767-355790 +
  9. v2_chrUh_004:362514-362537 +
  10. v2_chrUh_004:368866-368889 +
  11. v2_chrUh_004:374390-374413 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTATCCGAGGAAGCCCAAGAAGCCAAGAACAAGGAATACAAGAAATTCAGGTACTCCAACACCATTAAAATTTCAAGGACGAAACCAAGTGCGGATCTATTTTGTATGTTGGCGGCATCTTCTAATCTTTTTCTGGCTTCGTTAAGAGGCACTAGATATAATACTAAATATGTAAATTATAGTTATGGTCCAGATTGTTCTGTTTTATTAAATATTGTAGAATAAGATGCATTATTTGTAAAAAAAAGGTA
********************************************************************************************.......((((..(((..(((......................))).)))..)))).****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V058
head
..........................................................................................................................TAATCTTTTTCTGGCTTCGTTAAGAGG...................................................................................................... 27 0 3 1.67 5 0 5 0 0 0
...TCCGAGGAAGCCCAAGAAGCCAAGAAC............................................................................................................................................................................................................................. 27 0 10 0.30 3 1 0 2 0 0
............................................................................................GGATCTATTTTGTATGTTGGCGGC....................................................................................................................................... 24 0 11 0.18 2 1 0 0 1 0
............................................................................................GGATCTATTTTGTATGTTGGCGG........................................................................................................................................ 23 0 11 0.18 2 2 0 0 0 0
.............................................................................................GATCTATTTTGTATGTTGGCGGC....................................................................................................................................... 23 0 11 0.18 2 2 0 0 0 0
.TATCCGAGGAAGCCCAAGAAGCCAAG................................................................................................................................................................................................................................ 26 0 10 0.10 1 1 0 0 0 0
...TCCGAGGAAGCCCAAGAAGCCAAG................................................................................................................................................................................................................................ 24 0 10 0.10 1 1 0 0 0 0
.....................GCCAAGAACAAGGAATACAAGAAA.............................................................................................................................................................................................................. 24 0 10 0.10 1 1 0 0 0 0
TTATCCGAGGAAGCCCAAGAAGCCAAG................................................................................................................................................................................................................................ 27 0 10 0.10 1 1 0 0 0 0
.....................GCCAAGAAGAAGGAATACAAGAAATT............................................................................................................................................................................................................ 26 1 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................................ATGTAAATTATAGTTATGGTCCAGTT........................................................ 26 1 11 0.09 1 1 0 0 0 0
............................................................................................GGATCTATTTTGTATGTTGGCGGCA...................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0
............................................................................................GGATCTATTTTGTATGTTGGCGT........................................................................................................................................ 23 1 11 0.09 1 1 0 0 0 0
............................................................................................GGATCTATTTTGTATGTTGGCGGCATC.................................................................................................................................... 27 0 11 0.09 1 1 0 0 0 0
.........................................................................................................................................................................ATGTAAATTATAGTTATGGTCCAG.......................................................... 24 0 11 0.09 1 1 0 0 0 0
............................................................................................GGATCTATATTGTATGTTGGCGG........................................................................................................................................ 23 1 11 0.09 1 1 0 0 0 0
.........................................................................................................................................................................ATGTAAATTATAGTTATGGTCCA........................................................... 23 0 11 0.09 1 1 0 0 0 0
..............................GAGGAATACAAGAAATTCAGGTAC..................................................................................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0
.................AGAAGCCAAGACCAAGGATC...................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................CAATATTCTAGAATAAGA........................ 18 2 20 0.05 1 0 0 0 0 1
................TAGAAGCCAAGACCAAGGAT....................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.......................................AAGAAATTCACGTACGCCC................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

AATAGGCTCCTTCGGGTTCTTCGGTTCTTGTTCCTTATGTTCTTTAAGTCCATGAGGTTGTGGTAATTTTAAAGTTCCTGCTTTGGTTCACGCCTAGATAAAACATACAACCGCCGTAGAAGATTAGAAAAAGACCGAAGCAATTCTCCGTGATCTATATTATGATTTATACATTTAATATCAATACCAGGTCTAACAAGACAAAATAATTTATAACATCTTATTCTACGTAATAAACATTTTTTTTCCAT
******************************************************************************************************.......((((..(((..(((......................))).)))..)))).******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V120
male body		 M026
head
 V052
head
 V058
head
...........................................................................TCCTGCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 27 0 11 1.82 20 18 2 0 0 0 0 0
...AGGCTCCTTCGGGTTCTTCGGTTCTTGT............................................................................................................................................................................................................................ 28 0 10 1.40 14 1 0 13 0 0 0 0
............................................................................CCTGCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 26 0 11 1.18 13 10 3 0 0 0 0 0
...............GTTCTTCGGTTCTTGTTCCTTATGT................................................................................................................................................................................................................... 25 0 10 0.90 9 9 0 0 0 0 0 0
..............GGTTCTTCGGTTCTTGTTCCTTATGT................................................................................................................................................................................................................... 26 0 10 0.50 5 5 0 0 0 0 0 0
......................................................................................................................................CCGAAGCAATTCTCCGTGATCTATATT.......................................................................................... 27 0 9 0.44 4 3 1 0 0 0 0 0
..................CTTCGGTTCTTGTTCCTTATGTTCTT............................................................................................................................................................................................................... 26 0 10 0.40 4 3 1 0 0 0 0 0
.............................................................................CTGCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 25 0 12 0.33 4 3 0 0 1 0 0 0
............CGGGTTCTTCGGTTCTTGTTCCTTAT..................................................................................................................................................................................................................... 26 0 10 0.30 3 3 0 0 0 0 0 0
.......TCCTTCGGGTTCTTCGGTTCTTGT............................................................................................................................................................................................................................ 24 0 10 0.30 3 0 2 0 1 0 0 0
..................CTTCGGTTCTTGTTCCTTATGTTCT................................................................................................................................................................................................................ 25 0 10 0.30 3 2 1 0 0 0 0 0
..........................................................................TTCCTGCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 28 0 11 0.27 3 3 0 0 0 0 0 0
.............................GTTCCTTATGTTCTTTAAGTCCAT...................................................................................................................................................................................................... 24 0 12 0.25 3 3 0 0 0 0 0 0
.................................................CCATGAGGTTGTGGTAATTTTAAAGT................................................................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................CGAAGCAATTCTCCGTGATCTATATT.......................................................................................... 26 0 9 0.22 2 2 0 0 0 0 0 0
............CGGGTTCTTCGGTTCTTGTTCCTT....................................................................................................................................................................................................................... 24 0 10 0.20 2 2 0 0 0 0 0 0
.....GCTCCTTCGGGTTCTTCGGTTCTTGT............................................................................................................................................................................................................................ 26 0 10 0.20 2 2 0 0 0 0 0 0
....................TCGGTTCTTGTTCCTTATGTTCTTT.............................................................................................................................................................................................................. 25 0 10 0.20 2 2 0 0 0 0 0 0
................TTCTTCGGTTCTTGTTCCTTATGT................................................................................................................................................................................................................... 24 0 10 0.20 2 1 1 0 0 0 0 0
....................TCGGTTCTTGTTCCTTATGTTCTT............................................................................................................................................................................................................... 24 0 10 0.20 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................AACATCTTATTCTACGTAATAAACATT.......... 27 0 5 0.20 1 1 0 0 0 0 0 0
..........................................................................TTCCTGCTTTGGTTCACGCCTAGAT........................................................................................................................................................ 25 0 11 0.18 2 2 0 0 0 0 0 0
......................................................................AAAGTTCCTGCTTTGGTTCACGCC............................................................................................................................................................. 24 0 11 0.18 2 2 0 0 0 0 0 0
............................................................................CCTGCTTTGGTTCACGCCTAGATAA...................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0 0 0
.........................................................................GTTCCTGCTTTGGTTCACGCCTAGAT........................................................................................................................................................ 26 0 11 0.18 2 2 0 0 0 0 0 0
..............................................................................TGCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 24 0 12 0.17 2 1 1 0 0 0 0 0
...............................................................................GCTTTGGTTCACGCCTAGATAAA..................................................................................................................................................... 23 0 12 0.17 2 2 0 0 0 0 0 0
......................................................................................................................................CCGAAGCAATTCTCCGTGATCTATAT........................................................................................... 26 0 9 0.11 1 1 0 0 0 0 0 0
...........CCGGGTTCTTCGGTTCTTGTTCCTT....................................................................................................................................................................................................................... 25 1 10 0.10 1 0 1 0 0 0 0 0
...........TCGGGTTCTTCGGTTCTTGTTCCTT....................................................................................................................................................................................................................... 25 0 10 0.10 1 0 1 0 0 0 0 0
....................TCGGTTCTTGTTCCGTATGTTCT................................................................................................................................................................................................................ 23 1 10 0.10 1 1 0 0 0 0 0 0
.............GGGTTCTTCGGTTCTTGTTCCTTATGT................................................................................................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
....................TCGGTTCTTGTTCCTTATGTTCTGT.............................................................................................................................................................................................................. 25 1 10 0.10 1 0 1 0 0 0 0 0
...............GTTCTTCGGTTCTTGTTCCTTATGTT.................................................................................................................................................................................................................. 26 0 10 0.10 1 1 0 0 0 0 0 0
............CGGGTTCTTCGGTTCTTGTTCCTTATGT................................................................................................................................................................................................................... 28 0 10 0.10 1 1 0 0 0 0 0 0
............CGGGTTCTTCGGTTCTTGTTCATT....................................................................................................................................................................................................................... 24 1 10 0.10 1 0 1 0 0 0 0 0
.........CTTCGGGTTCTTCGGTTCTTGTTCCTT....................................................................................................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
...............GTTCTTCGGTTCTTGTTCCTTATGTCG................................................................................................................................................................................................................. 27 2 10 0.10 1 1 0 0 0 0 0 0
...............GTTCTTCGGTTCTTGCTCCTTATG.................................................................................................................................................................................................................... 24 1 10 0.10 1 1 0 0 0 0 0 0
....................TCGGTTCTTGTGCCTTATGTTCTTT.............................................................................................................................................................................................................. 25 1 10 0.10 1 1 0 0 0 0 0 0
............CGGGTTCTTCGGTTCTTGTTCCT........................................................................................................................................................................................................................ 23 0 10 0.10 1 1 0 0 0 0 0 0
...........TCGGGTTCTTCGGTTCTTGTTCC......................................................................................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0
.......TCCTTCGGGTTCTTCGGTTCTTTT............................................................................................................................................................................................................................ 24 1 10 0.10 1 0 1 0 0 0 0 0
..................CTTCGCTTCTTGTTCCTTGTGTTCTTT.............................................................................................................................................................................................................. 27 2 10 0.10 1 1 0 0 0 0 0 0
......................................................................................................................................................................TTATACATTTAATATCAATACCAGGTCC......................................................... 28 1 10 0.10 1 0 0 0 0 1 0 0
......CTCCTTCGGGTTCTTCGGTTCTTGT............................................................................................................................................................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0 0
.....................CGGTTCTTGTTCCTTATGTTCTT............................................................................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0
..................CTTCGGTTCTTGTTCCTTATGTTC................................................................................................................................................................................................................. 24 0 10 0.10 1 1 0 0 0 0 0 0
..............GGTTCTTCGGTTCTTGTTCCTTATG.................................................................................................................................................................................................................... 25 0 10 0.10 1 1 0 0 0 0 0 0
..........................................................................................................................................AGCAATTCTCCGTGATCTATATTAT........................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0 0
...............GTTCTTCGGTTCTTGTGCCTTATGT................................................................................................................................................................................................................... 25 1 10 0.10 1 1 0 0 0 0 0 0
...............GTTCTTCGGTTCTTGTCCCTTATGT................................................................................................................................................................................................................... 25 1 10 0.10 1 1 0 0 0 0 0 0
...AGGCTCCTTCGGGTTCTTCGGTTCT............................................................................................................................................................................................................................... 25 0 10 0.10 1 1 0 0 0 0 0 0
...................TTCGGTTCTTGTTCCTGATGTTCTT............................................................................................................................................................................................................... 25 1 10 0.10 1 1 0 0 0 0 0 0
...........TCGGGTTCTTCGGTTCTTGTTCCTTA...................................................................................................................................................................................................................... 26 0 10 0.10 1 0 1 0 0 0 0 0
...........................................................................................................................................GCAATTCTCCGTGATCTATATTATGAT..................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
...........TCGGGTTCTTCGGTTCTTGTTCCTTAT..................................................................................................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
.......................................................................................TCACGCCTAGATAAAACATACAACCG.......................................................................................................................................... 26 0 11 0.09 1 0 1 0 0 0 0 0
............................................................................CCTGCTTTGGTTCACGCCTAGAT........................................................................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0 0
.............................................................GGTAATTTGATAGTTCCT............................................................................................................................................................................ 18 2 11 0.09 1 1 0 0 0 0 0 0
.......CCCTTCGGGTTCTTCGGTTCTCTT............................................................................................................................................................................................................................ 24 3 11 0.09 1 0 1 0 0 0 0 0
......................................................................................................................................................................................AATACCAGGTCTAACAAGACAAAAT............................................ 25 0 11 0.09 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................CCAGGTCTAACAAGACAAAATAAT......................................... 24 0 11 0.09 1 1 0 0 0 0 0 0
.................................................................................................ATAAAACATACAACCGCCGTAGAAGATT.............................................................................................................................. 28 0 11 0.09 1 0 0 0 1 0 0 0
AATAGGCTCCTTCGGGTTCTTCGGT.................................................................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0 0
...................................................................................................................................................................................ATCAATACCAGGTCTAACAAGACAAAAT............................................ 28 0 11 0.09 1 1 0 0 0 0 0 0
.....................................TGTTCTTTAAGTCCATGAGGT................................................................................................................................................................................................. 21 0 11 0.09 1 1 0 0 0 0 0 0
............................................................................CCTGCTTTGGTTCACGCCTAGTTAAA..................................................................................................................................................... 26 1 11 0.09 1 0 1 0 0 0 0 0
...........TTTGGTTCTTCGGTTCTTGTTC.......................................................................................................................................................................................................................... 22 2 11 0.09 1 0 1 0 0 0 0 0
............................................................................CCTGCTTTGGTTCACGCATAGATAAA..................................................................................................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0
..............................................................................TGCTTTGGTTCACGCGTAGATAAA..................................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0
..................................................................................CTGGTTCACGCCTAGTTAAAACAT................................................................................................................................................. 24 2 12 0.08 1 0 1 0 0 0 0 0
...............................................................................GCTTTGGTTCACGCGTAGATAAA..................................................................................................................................................... 23 1 12 0.08 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAGGCAAAATAATTTATAACATCTT............................. 27 1 14 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACAAAATAATTGATAACATC............................... 20 1 17 0.06 1 1 0 0 0 0 0 0
...............................................................................GCTATGGTGGACGCCTAGA......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
...........................................................................TCCTGCTTTGGTTGACGT.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 v2_chrUh_004:294262-294512 + dya_1277 TTATCCGAGGAAGCCCAAGAAGCCAAGAACAAGGAATACAAGAAATTCAGGTACTCCAACACCATTAA-AATTTCAAGGACGAAACCAAGTGCGGATCTATTTTGTATGTTGGCGGCATCTTCTAATCTTTTTCTGGCTTCGTTAAGAGGCACTAGATATAATACTAAATATGTAAATTATAGTTATGGTCCAGATTGTTCTGTTTTATTAAATATTGTAGAA---------------TAAGATGCATTATTT----GTA----AAAAAAAGGTA
droSim2 2r:956993-957066 + TAGTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAT----AAA----AAAGCAAAGTA
droBia1 scf7180000302521:59679-59728 - TTATCGGAGGAAGCTGCGGAGGCGAACAACAAAGAAAGAAAGAAATGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413319:5508-5759 - CTTTCCGAGGAAGCGCAGGAATCTCTAAACATATTTTATAAAAAATACAGATTGCTGAATACATTTAA-GACATCAAGAATGAGGGAAAATGAGGATCTGTTCAATATGTTAGCTGCATCTTCTGATCCTCCAATTTCCTCATTGAGGCATGTTATGTCAGGAAAAGAGTTAGAAT---CTATTTATAGTCCATAAATGTTAAGTCTATTGGATTTACCAAGTTTACC--------------AAATTGTGACC----ATTATTT-AAAAAACATG
droEle1 scf7180000491110:18906-19032 + TTACGGGAAGAAGCGCAAGAGGCCAAAAACAAGGAAAACAAGAGATATAGATGCGCGAACACCTGCAA-CTTTTCTCGAAAGAAACAAAATAAAGATTTGCTTAGCATGCTACTAGCTTCCTCGGACC---------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000771872:241-382 + ATGTCCGAGGAAGCTCTTGAAGCCAAGAACAAGGACTTCCGAAACGTACGCGAGAGCAATATAAGAAA-AATTGCAGGAAAAATACC-ATGGAAGATGTGTTAAATGCCTTATTAGTTTCTTCCGACCCTTTGATAACTTCATT-----------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000451519:3868-3968 - GTCTCGGAGGAAGCTGCAGAGGCGAACAACAAAGAAATGAAGAAATGCAGACTGAATCATACCCGCAA-AATGTCACGAATACTTACAAATACAGACATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302015:1095-1347 + CTTTCGGAAGAAGCTCAGGAGTCGCTGAATAAATTCTATAAGAAATATAGATACTGCAACTCTTACAA-GTCATCAAGACTGAGGCAAAATGAGGACCTGTTCAACATGTTGGCTGCATCATCTGACCCATTTATTGCATCTCTACGGCATGTAAAATCACGAAAAGAGATAGAATCAAGTGATTATAGTCCAGAAATGCTTAGTCTATTAGAAATTCCTCAAATAT-----------AAGCATATATTTA------GTA----ATAAGTAGTCA
droAna3 scaffold_13282:37295-37437 - ATGTCCGAGGAAGCTCTTGAAGCCAGGAACAAGGATTTCCGAAATGTACGAGAGAGCAATACAAGGAAACATTTCAGGAAAAATACC-ATGGAAGATGTGTTAAATGCCTTATTAGTTTCTTCCGACCCCTTGATAACGTCATT-----------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396449:23184-23320 - CTATCAGAAGAAGCTCAAGAGGCAAGGAATAAGGATGTGAGAAGATACCGGGAAATGTTCACCCGGAA-AACATCAAGAATAGATACCAACACAGATCTTATGAATAGATTGTTAGTATCTTCGGATCCATTCCTTGC-----------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_53:33618-33879 + ATGTCTGAGGAAGCCCAGGAGACAAGAAACAAAGATTACAAAAAATACAGAAGTATGAATACGTGCAA-GACATCACGAATCAAGCAAAACCAAGACCTTTTCAACATGTTGGCAGCCTCTTCAGATCCATAAATTTCAACCATTAGATATGTTAGATAACAAAATAAATCGGCAA---GCAGTTATTCTTCAGAAATGATACGTTTATTGGATATTCCTCCCACAAAACAGGAATTAAAGGAT----TATTTTACAGT----AA-CAAAAAAAT
droPer2 scaffold_72:13034-13295 - ATGTCTGAGGAAGCCCAGGAGACAAGAAACAAAGATTACAAAAAATACAGAAGTATGAATACGTGCAA-GACATCACGAATCAAGCAAAACCAAGACCTTTACAACATGTTGGCAGCCTCTTCAGATCCATAAATTTCAACCATTAGATATGTTAGATAACAAAATAAATCGGCAA---GCAGTTATTCTTCAGAAATGATACGTTTATTAGATATTCCTCCCACAAAACAGGAAGTAAAGGAT----TATTTTACAGT----AA-CAAAAAAAT
droWil2 scf2_1100000004813:58591-58845 + CTATCCGAAGAAGCACAGGAATGTAAAAACAAGGACTACAAAAAGTTCAGATACACTAACACATTAAA-AACTTCTCGTGTTAGACAAAATAAAGACCTTTTTAACATGCTAGCAGCCTCTTCTGACCCATTTATTGCATCACTGAGACACGTGCGATCACGAAAGGATTTGGAAAATAATAACTTTAGTCCCGAAATGTTGAGTTTATTAGATATTACTGTA---------AAGATTAAAAAT----TATTTTG--AAA----AAAATCAGCCA
droMoj3 scaffold_6482:403861-404111 - CTATCAGAAGAAGTCCAGGAATGTAAGAACAAAGATTACAAAAAGTTTCGCTACTCCAATACTTGCAA-GATTTCACGCATTAGACAAAACGAGGATCTTTTTAATATGTTGGCAGCATCTTCGGACTCATTTATCTCTTTACTGAGACATGTAAGAACTTATAAAAATTTAGAAA---ATAATTATTGCCCCGAAACTTTAAGCTTATTAGACTTTGTTTTGTTAC---------------ATTTATTGCAT----ACAATTT-AAATAAAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TTATCCGAGGAAGCCCAAGAAGCCAAGAACAAGGAATACAAGAAATTCAGGTACTCCAACACCATTAA-AATTTCAAGGACGAAACCAAGTGCGGATCTATTTTGTATGTTGGCGGCATCTTCTAATCTTTTTCTGGCTTCGTTAAGAGGCACTAGATATAATACTAAATATGTAAATTATAGTTATGGTCCAGATTGTTCTGTTTTATTAAATATTGTAGAA---------------TAAGATGCATTATTT----GTA----AAAAAAAGGTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................TAATCTTTTTCTGGCTTCGTTAAGAGG.............................................................................................................................2731.67500000000005
...TCCGAGGAAGCCCAAGAAGCCAAGAAC.....................................................................................................................................................................................................................................................27100.30301200000000
.............................................................................................GGATCTATTTTGTATGTTGGCGGC..............................................................................................................................................................24110.18201000010000
.............................................................................................GGATCTATTTTGTATGTTGGCGG...............................................................................................................................................................23110.18202000000000
..............................................................................................GATCTATTTTGTATGTTGGCGGC..............................................................................................................................................................23110.18202000000000
.TATCCGAGGAAGCCCAAGAAGCCAAG........................................................................................................................................................................................................................................................26100.10101000000000
...TCCGAGGAAGCCCAAGAAGCCAAG........................................................................................................................................................................................................................................................24100.10101000000000
.....................GCCAAGAACAAGGAATACAAGAAA......................................................................................................................................................................................................................................24100.10101000000000
TTATCCGAGGAAGCCCAAGAAGCCAAG........................................................................................................................................................................................................................................................27100.10101000000000
.............................................................................................GGATCTATTTTGTATGTTGGCGGCA.............................................................................................................................................................25110.09101000000000
.............................................................................................GGATCTATTTTGTATGTTGGCGT...............................................................................................................................................................23110.09101000000000
.............................................................................................GGATCTATTTTGTATGTTGGCGGCATC...........................................................................................................................................................27110.09101000000000
..........................................................................................................................................................................ATGTAAATTATAGTTATGGTCCAG.................................................................................24110.09101000000000
..........................................................................................................................................................................ATGTAAATTATAGTTATGGTCCA..................................................................................23110.09101000000000
droSim2
TAGTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAT----AAA----AAAGCAAAGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................GTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAG.................................20201.4028000028000000000000
............................................................................................................ATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................24201.1523000000014090000000
...........................................................................................TAAGATTT-TTAAACTTATTGTTAGT..............................................................................................................................................................25141.071500000053340000000
..........................................................................................................TTATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................26201.002000000065360000000
...........................................................................................................TATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................25200.45900000000450000000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTA......................................................................................................................................................................25140.36500000000130010000
.....................................................................................................TAAACTTATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GA...................................28180.33600000030120000000
...........................................................................................TAAGATTT-TTAAACTTATTGTTAGTTCT...........................................................................................................................................................28130.31400000001120000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................17200.30600000000006000000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACT........................................................................................................................................................................23150.27400000000210010000
........................................................................................................................TAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAT----AAA----AAA........28130.23300000010020000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAA.......................26200.20400000000022000000
...........................................................................................TAAGATTT-TTAAACTTATTGTTAGTTC............................................................................................................................................................27130.15200010010000000000
.............................................................................................................TTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................23200.15300000000300000000
.................................................................................................................TAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATA.........................26200.15300000010110000000
..............................................................................................................TGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAA...........................27200.15300000000021000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATA.........................24200.15300000000003000000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTATA....................................................................................................................................................................27140.14200000000000020000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTT.......................................................................................................................................................................24150.13200010000001000000
...........................................................................................TAAGATTT-TTAAACTTATTGTTA................................................................................................................................................................23150.13200000000020000000
.......................................................................................................................TTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAT----AA................25190.11200000000020000000
.................................................................................................................TAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAA.......................28200.10200000010010000000
.............................................................................................................TTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GA...................................20200.10200000010100000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAAT..........................23200.10200000001001000000
..............................................................................................................TGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................22200.10200000001100000000
............................................................................................AAGATTT-TTAAACTTATTGTTAGTTC............................................................................................................................................................26130.08100000000010000000
............................................................................................AAGATTT-TTAAACTTATTGTTAGTTCT...........................................................................................................................................................27130.08100000000100000000
............................................................................................AAGATTT-TTAAACTTATTGTTAGT..............................................................................................................................................................24140.07100000000100000000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTAT.....................................................................................................................................................................26140.07100000000001000000
......TAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACTTATTGA..................................................................................................................................................................25150.07100000001000000000
..GTTATAGT---------------------------------------------------------------------------------TAAGATTT-TTAA...........................................................................................................................................................................20160.06100000000000001000
........................................................................................................................TAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAT----AAA----...........25180.06100000000010000000
........GT---------------------------------------------------------------------------------TAAGATTT-TTAAACTT.......................................................................................................................................................................18180.06100000000001000000
......TAGT---------------------------------------------------------------------------------TAAGATTT-TTAAACT........................................................................................................................................................................19180.06100000000010000000
...........................................................................................TAAGATTT-TTAAACT........................................................................................................................................................................15190.05100000000001000000
..........................................................................................................TTATTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GA...................................23200.05100000010000000000
.....................................................................................................................TCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAA.......................24200.05100000010000000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAA...........................22200.05100000000001000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTC.............................20200.05100000000001000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGGG...............................18200.05100000000001000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATT..............................19200.05100000000001000000
...............................................................................................................GTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAA..................................19200.05100000000000100000
..................................................................................................................AGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAAAA----..................28200.05100000000100000000
..................................................................................................................AGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGA................................18200.05100000000001000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATAA........................25200.05100000000010000000
...................................................................................................................GTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGGCC..............................19200.05100000000001000000
.............................................................................................................TTGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGAT...............................24200.05100000000010000000
................................................................................................................TTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAAT..........................26200.05100000000010000000
..........................................................................................................................T------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCAATA.........................17200.05100000000001000000
................................................................................................................TTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATTCA............................24200.05100000000100000000
..............................................................................................................TGTTAGTTCTTAT------------------------------------------------------------------------------------------------ACAA---------------GAAGATT..............................24200.05100000000001000000
..................................................................................................T-TTAAACTTATTGTTA................................................................................................................................................................16200.05100000000010000000
droBia1
TTATCGGAGGAAGCTGCGGAGGCGAACAACAAAGAAAGAAAGAAATGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTTCCGAGGAAGCGCAGGAATCTCTAAACATATTTTATAAAAAATACAGATTGCTGAATACATTTAA-GACATCAAGAATGAGGGAAAATGAGGATCTGTTCAATATGTTAGCTGCATCTTCTGATCCTCCAATTTCCTCATTGAGGCATGTTATGTCAGGAAAAGAGTTAGAAT---CTATTTATAGTCCATAAATGTTAAGTCTATTGGATTTACCAAGTTTACC--------------AAATTGTGACC----ATTATTT-AAAAAACATGSizeHit CountTotal NormTotal
No Reads
droEle1
TTACGGGAAGAAGCGCAAGAGGCCAAAAACAAGGAAAACAAGAGATATAGATGCGCGAACACCTGCAA-CTTTTCTCGAAAGAAACAAAATAAAGATTTGCTTAGCATGCTACTAGCTTCCTCGGACC---------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGTCCGAGGAAGCTCTTGAAGCCAAGAACAAGGACTTCCGAAACGTACGCGAGAGCAATATAAGAAA-AATTGCAGGAAAAATACC-ATGGAAGATGTGTTAAATGCCTTATTAGTTTCTTCCGACCCTTTGATAACTTCATT-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTCTCGGAGGAAGCTGCAGAGGCGAACAACAAAGAAATGAAGAAATGCAGACTGAATCATACCCGCAA-AATGTCACGAATACTTACAAATACAGACATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTTCGGAAGAAGCTCAGGAGTCGCTGAATAAATTCTATAAGAAATATAGATACTGCAACTCTTACAA-GTCATCAAGACTGAGGCAAAATGAGGACCTGTTCAACATGTTGGCTGCATCATCTGACCCATTTATTGCATCTCTACGGCATGTAAAATCACGAAAAGAGATAGAATCAAGTGATTATAGTCCAGAAATGCTTAGTCTATTAGAAATTCCTCAAATAT-----------AAGCATATATTTA------GTA----ATAAGTAGTCASizeHit CountTotal NormTotal
No Reads
droAna3
ATGTCCGAGGAAGCTCTTGAAGCCAGGAACAAGGATTTCCGAAATGTACGAGAGAGCAATACAAGGAAACATTTCAGGAAAAATACC-ATGGAAGATGTGTTAAATGCCTTATTAGTTTCTTCCGACCCCTTGATAACGTCATT-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................TTCAGGAAAAATACC-ATGGAAGATG.................................................................................................................................................................................2511.001010000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACC...................................................................................................................................................23150.93144100000
.............................................................................................................TTATTAGTTTCTTCCGACCCCTTG..............................................................................................................................................24140.86121200000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACCC..................................................................................................................................................24140.294130000
.................................................................................................................TAGTTTCTTCCGACCCCTTGATA...........................................................................................................................................23140.213300000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACCCC.................................................................................................................................................25130.152200000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACCCCT................................................................................................................................................26130.152200000
........................................................................................................ATGCCTTATTAGTTTCTTCCGACCCC.................................................................................................................................................26130.152110000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACCCCTT...............................................................................................................................................27130.152200000
............................................TGTACGAGAGAGCAATACAAGGA................................................................................................................................................................................................................2370.141001000
...........................................................................AGGAAAAATACC-ATGGAAGATGT................................................................................................................................................................................23150.132020000
...............................................ACGAGAGAGCAATACAAGGAAA..............................................................................................................................................................................................................2280.131010000
ATGTCCGAGGAAGCTCTTGAAGCC...........................................................................................................................................................................................................................................................2490.111010000
.........GAAGCTCTTGAAGCCAGGAACAAGG.................................................................................................................................................................................................................................................25110.091100000
..........................................................................................................GCCTTATTAGTTTCTTCCGACCCCT................................................................................................................................................25130.081010000
.........................................................................................................TGCCTTATTAGTTTCTTCCGACCCCTTG..............................................................................................................................................28130.081100000
................................................................................................................TTAGTTTCTTCCGACCCCTTGATAACG........................................................................................................................................27130.081100000
..........................................................................................................GCCTTATTAGTTTCTTCCGACCCCTTGA.............................................................................................................................................28130.081100000
..............................................................................................................TATTAGTTTCTTCCGACCCCTTGAT............................................................................................................................................25140.071010000
.............................................................................................................TTATTAGTTTCTTCCGACCCCTTGA.............................................................................................................................................25140.071010000
.............................................................................................................TTATTAGTTTCTTCCGACCCCTTGATA...........................................................................................................................................27140.071010000
.......................................................................................................................CTTCCGACCCCTTGATAACGTCATT-----------------------------------------------------------------------------------------------------------------------------------25140.071100000
...............................................................................................................ATTAGTTTCTTCCGACCCCTTG..............................................................................................................................................22140.071100000
.............................................................................................................TTATTAGTTTCTTCCGACCCC.................................................................................................................................................21150.071010000
.............................................................................................................TTATTAGTTTCTTCCGACCCCT................................................................................................................................................22150.071010000
.......................................................................................................................CTTCCGACCCCTTGATAACGTC......................................................................................................................................22150.071100000
........................................................................................................ATGCCTTATTAGTTTCTTCCGAC....................................................................................................................................................23150.071010000
.............................................................................................................TTATTAGTTTCTTCCGACCC..................................................................................................................................................20160.061100000
........GGAAGCTCTTGAAGCCAGGAAC.....................................................................................................................................................................................................................................................22200.051100000
droBip1
CTATCAGAAGAAGCTCAAGAGGCAAGGAATAAGGATGTGAGAAGATACCGGGAAATGTTCACCCGGAA-AACATCAAGAATAGATACCAACACAGATCTTATGAATAGATTGTTAGTATCTTCGGATCCATTCCTTGC-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATGTCTGAGGAAGCCCAGGAGACAAGAAACAAAGATTACAAAAAATACAGAAGTATGAATACGTGCAA-GACATCACGAATCAAGCAAAACCAAGACCTTTTCAACATGTTGGCAGCCTCTTCAGATCCATAAATTTCAACCATTAGATATGTTAGATAACAAAATAAATCGGCAA---GCAGTTATTCTTCAGAAATGATACGTTTATTGGATATTCCTCCCACAAAACAGGAATTAAAGGAT----TATTTTACAGT----AA-CAAAAAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................CAAAACAGGAATTAAAGGAT----TATT.......................2411.0010100000000
..............................................................................................................................................................................................................TATTGGATATTCCTCCCACAAAA..............................................2311.0010100000000
............................................................................................................GTTGGCAGCCTCTTCAGATCCATAAATT...........................................................................................................................................2811.0010100000000
.........................................................................................................CATGTTGGCAGCCTCTTCAGATC...................................................................................................................................................2390.1110100000000
droPer2
ATGTCTGAGGAAGCCCAGGAGACAAGAAACAAAGATTACAAAAAATACAGAAGTATGAATACGTGCAA-GACATCACGAATCAAGCAAAACCAAGACCTTTACAACATGTTGGCAGCCTCTTCAGATCCATAAATTTCAACCATTAGATATGTTAGATAACAAAATAAATCGGCAA---GCAGTTATTCTTCAGAAATGATACGTTTATTAGATATTCCTCCCACAAAACAGGAAGTAAAGGAT----TATTTTACAGT----AA-CAAAAAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CTATCCGAAGAAGCACAGGAATGTAAAAACAAGGACTACAAAAAGTTCAGATACACTAACACATTAAA-AACTTCTCGTGTTAGACAAAATAAAGACCTTTTTAACATGCTAGCAGCCTCTTCTGACCCATTTATTGCATCACTGAGACACGTGCGATCACGAAAGGATTTGGAAAATAATAACTTTAGTCCCGAAATGTTGAGTTTATTAGATATTACTGTA---------AAGATTAAAAAT----TATTTTG--AAA----AAAATCAGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................GAGTTTATTAGATATTACTGTA---------AA.........................................2411.00101000
......................................................................................................TAACATGCTAGCAGCCTCTTCTG......................................................................................................................................................2311.00101000
................................................................................................................................................................................................................TTAGATATTACTGTA---------AAGATTAAAAAT----...........................2711.00100010
.......................................................................................................AACATGCTAGCAGCCTCTTCTGACC...................................................................................................................................................2511.00101000
........................................................................................................................................................................................................TGAGTTTATTAGATATTACTGTA---------AAGAT......................................2811.00101000
.....................TGTAAAAACAAGGACTACAAAAAGT.....................................................................................................................................................................................................................................2540.50201010
..........................................................................................TAAAGACCTTTTTAACATGCTAGCAG...............................................................................................................................................................2620.50101000
.........................................................................TCTCGTGTTAGACAAAATAAAGACCTTT..............................................................................................................................................................................2850.20101000
................................................................................................................................CATTTATTGCATCACTGAGACAC............................................................................................................................2350.20101000
.........................................................................TCTCGTGTTAGACAAAATAAAGACCT................................................................................................................................................................................2650.20101000
.............................................................................GTGTTAGACAAAATAAAGACCTTTT.............................................................................................................................................................................2560.17101000
..........................................................................................................................................ATCACTGAGACACGTGCGATCACGAA...............................................................................................................26200.15301020
.........................................................................TCTCGTGTTAGACAAAATAAAGACA.................................................................................................................................................................................2580.13101000
.................................................................................................CTTTTTAACATGCTAGCAGCCTCT..........................................................................................................................................................24200.10201010
..............................................................................................GACCTTTTTAACATGCTAGCAGCCTCT..........................................................................................................................................................27200.10202000
..........AAGCACAGGAATGTAAAAACAAGGA................................................................................................................................................................................................................................................25200.10202000
............................................................................................................................................CACTGAGACACGTGCGATCACGAAA..............................................................................................................25200.10200020
.............................................................................................................................................ACTGAGACACGTGCGATCACG.................................................................................................................21200.10201010
.....CGAAGAAGCACAGGAATGTAAAAAC.....................................................................................................................................................................................................................................................25200.10200020
....................................................................................................................................TATTGCATCACTGAGACACGTGCGA......................................................................................................................25200.10202000
..............................................................ATTAAA-AACTTCTCGTGTTAGACAAAA.........................................................................................................................................................................................27200.05101000
...............CAGGAATGTAAAAACAAGGACT..............................................................................................................................................................................................................................................22200.05101000
........................................................................................................................................................TGCGATCACGAAAGGATTTGGA.....................................................................................................22200.05100010
...........AGCACAGGAATGTAAAAACAAGGAC...............................................................................................................................................................................................................................................25200.05110000
..................................................................................................................................................GACACGTGCGATCACGAAAGGAT..........................................................................................................23200.05101000
..............................................................................................GACCTTTTTAACATGCTAGCAGC..............................................................................................................................................................23200.05101000
...........................................................................................................................................TCACTGAGACACGTGCGATCACG.................................................................................................................23200.05100010
..........................................................................................................................................ATCACTGAGACACGTGCGATCACGAAAG.............................................................................................................28200.05101000
......................................................................................................................................TTGCATCACTGAGACACGTGC........................................................................................................................21200.05101000
...........................................................................................................................................TCACTGAGACACGTGCGATCACGAAAG.............................................................................................................27200.05101000
.....................................................................................................TTAACATGCTAGCAGCCTCTT.........................................................................................................................................................21200.05101000
........................................................................................................................................GCATCACTGAGACACGTGCGATCACGA................................................................................................................27200.05101000
..............................................................................................................................................................CACGAAAGGATTTGGAAAAT.................................................................................................20200.05101000
.TATCCGAAGAAGCACAGGAATGTAA.........................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................TGCATCACTGAGACACGTGCGATCA...................................................................................................................25200.05100010
.TATCCGAAGAAGCACAGGAATGTAAA........................................................................................................................................................................................................................................................26200.05100010
...................................................................................................................................TTATTGCATCACTGAGACACGTGCGA......................................................................................................................26200.05100010
...............................................................................................................................................TGAGACACGTGCGATCACGAAAGGATT.........................................................................................................27200.05101000
..................................................................................................................................................GACACGTGCGATCACGAAAGGATT.........................................................................................................24200.05101000
.........GAAGCACAGGAATGTAAAAACAAGGA................................................................................................................................................................................................................................................26200.05101000
.............................................................................................AGACCTTTTTAACATGCTAGC.................................................................................................................................................................21200.05101000
...................................................................................................................................TTATTGCATCACTGAGACACGTG.........................................................................................................................23200.05100010
.........................................................................................................................................CATCACTGAGACACGTGCGATCACG.................................................................................................................25200.05101000
...............CAGGAATGTAAAAACAAGGAC...............................................................................................................................................................................................................................................21200.05110000
......................................................................................................................................................................................................GTTGAGTTTATTAGATAT...........................................................18200.05101000
................................................................................................................................................GAGACACGTGCGATCACGAAAGGATTT........................................................................................................27200.05101000
.......................................................................................................................................................GTGCGATCACGAAAGGAT..........................................................................................................18200.05101000
........................................................................................................................................GCATCACTGAGACACGTGCGATCACG.................................................................................................................26200.05100010
.......................................................................................................................................................GTGCGATCACGAAAGGATTT........................................................................................................20200.05101000
droMoj3
CTATCAGAAGAAGTCCAGGAATGTAAGAACAAAGATTACAAAAAGTTTCGCTACTCCAATACTTGCAA-GATTTCACGCATTAGACAAAACGAGGATCTTTTTAATATGTTGGCAGCATCTTCGGACTCATTTATCTCTTTACTGAGACATGTAAGAACTTATAAAAATTTAGAAA---ATAATTATTGCCCCGAAACTTTAAGCTTATTAGACTTTGTTTTGTTAC---------------ATTTATTGCAT----ACAATTT-AAATAAAATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................AAAGATTACAAAAAGTTTCGCTACTCC..........................................................................................................................................................................................................................2716.006400020
........................................................................................................................................................TAAGAACTTATAAAAATTTAGAAA---ATAA............................................................................................2814.004400000
...................................................................................GACAAAACGAGGATCTTTTTAATATG......................................................................................................................................................................2614.004400000
..............................AAAGATTACAAAAAGTTTCGCTACT............................................................................................................................................................................................................................2513.003100020
..............................AAAGATTACAAAAAGTTTCGCTACTC...........................................................................................................................................................................................................................2612.002200000
..............................AAAGATTACAAAAAGTTTCGCTAC.............................................................................................................................................................................................................................2412.002000020
..............................AAAGATTACAAAAAGTTTCGCTACTCCA.........................................................................................................................................................................................................................2812.002200000
............................................................................................................................GACTCATTTATCTCTTTACTGAGACA.............................................................................................................................2612.002200000
...................................................................................GACAAAACGAGGATCTTTTTAATATGT.....................................................................................................................................................................2712.002200000
....................................................................................ACAAAACGAGGATCTTTTTAATATG......................................................................................................................................................................2511.001100000
................................................................................TTAGACAAAACGAGGATCTTTTTAAT.........................................................................................................................................................................2611.001000010
........................................................................................................................................................................................TATTGCCCCGAAACTTTAAGCTTAT..................................................................2511.001000010
..............................AAAGATTACAAAAAGTTTCGCTACTCCC.........................................................................................................................................................................................................................2811.001100000
...........................................................................................................TGTTGGCAGCATCTTCGGACTCAT................................................................................................................................................2411.001100000
...................................TTACAAAAAGTTTCGCTACTC...........................................................................................................................................................................................................................2111.001100000
...............................AAGATTACAAAAAGTTTCGCTACTCCA.........................................................................................................................................................................................................................2711.001100000
....................................................................................ACAAAACGAGGATCTTTTTAATATGT.....................................................................................................................................................................2611.001100000
.TATCAGAAGAAGTCCAGGAAT.............................................................................................................................................................................................................................................................2111.001100000
................................................................................TTAGACAAAACGAGGATCTTTTTAATA........................................................................................................................................................................2711.001100000
.............TCCAGGAATGTAAGAACAAAGATTAC............................................................................................................................................................................................................................................2611.001100000
.............................................................................GCATTAGACAAAACGAGGATCTTTT.............................................................................................................................................................................2511.001100000
...........................................................................................................................................................GAACTTATAAAAATTTAGAAA---ATAAT...........................................................................................2611.001100000
....................................................................................................................................TATCTCTTTACTGAGACATGTAAGAAAA...................................................................................................................2811.001100000
....................................................................................................TTTAATATGTTGGCAGCATCTTCGGAC....................................................................................................................................................2711.001100000
.....................TGTAAGAACAAAGATTACAAAAAGT.....................................................................................................................................................................................................................................2511.001100000
.TATCAGAAGAAGTCCAGGA...............................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................AGAACTTATAAAAATTTAGAAA---ATA.............................................................................................2511.001100000
...........................................................TACTTGCAA-GATTTCACGCATTAGACA............................................................................................................................................................................................2711.001100000
.....................................ACAAAAAGTTTCGCTACTC...........................................................................................................................................................................................................................1911.001100000
.............................................................................GCATTAGACAAAACGAGGATCTTT..............................................................................................................................................................................2411.001000010
................................................................................TTAGACAAAACGAGGATCTTTT.............................................................................................................................................................................2211.001100000
..............................................................................................................TGGCAGCATCTTCGGACTCATTTATC...........................................................................................................................................2611.001100000
.............................................................................................................................ACTCATTTATCTCTTTACTGAGAC..............................................................................................................................2411.001100000
........................................................................................................................................................................................TATTGCCCCGAAACTTTAAGCTTATTCCC..............................................................2911.001000010
.........................................................................................................TATGTTGGCAGCATCTTCGGACTCATT...............................................................................................................................................2711.001100000
...................................................................................GACAAAACGAGGATCTTTTTAAT.........................................................................................................................................................................2311.001000010

Generated: 05/18/2015 at 12:36 AM