ID:

dya_126

 Coordinate:

v2_chr2L_random_010:1034-1083 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BEL1-I_Dya-intLTRPao-
BEL1-LTR_DyaLTRPao-
mature
  1. 2L:877991-878008 +
  2. 2L:16398627-16398644 +
  3. 2R:5536894-5536911 +
  4. 3R:13877268-13877285 +
  5. 3R:21119943-21119960 +
  6. v2_chrUn_1549:1145-1162 +
  7. v2_chrUn_4918:896-913 +
  8. v2_chrUn_6380:373-390 +
  9. v2_chrUn_6756:576-593 +
  10. v2_chr2h_random_004:515022-515039 +
  11. v2_chr2h_random_004:563007-563024 +
  12. v2_chr2h_random_004:592977-592994 +
  13. v2_chr2L_random_001:269772-269789 +
  14. v2_chr2L_random_001:271917-271934 +
  15. dya_126  v2_chr2L_random_010:1034-1051 +
  16. v2_chr2h_random_002:60232-60249 +
  17. v2_chr3R_random_170:239779-239796 +
  18. v2_chr3h_random_002:254064-254081 +
  19. v2_chr3h_random_002:576363-576380 +
  20. v2_chrUn_158:9270-9287 +
  21. 2L:21127547-21127564 +
  22. v2_chr2L_random_028:1752880-1752897 +
  23. v2_chrUn_002:237520-237537 +
star
  1. 3L:24155711-24155730 -
  2. 3R:168237-168256 -
  3. 3R:176833-176852 -
  4. v2_chrUn_3897:16628-16647 +
  5. v2_chrUn_1919:44240-44259 +
  6. chrYh:59324-59343 +
  7. dya_126  v2_chr2L_random_010:1063-1082 +
  8. v2_chr2h_random_002:51847-51866 +
  9. v2_chr2L_random_028:744201-744220 +
  10. v2_chr2L_random_028:754255-754274 +
  11. v2_chrX_random_041:66604-66623 -
  12. v2_chr3h_random_002:451161-451180 -
  13. v2_chr3h_random_002:740260-740279 -
  14. v2_chrX_random_057:27608-27627 +
  15. v2_chrUn_001:38552-38571 +
  16. v2_chrUn_001:49296-49315 +
  17. v2_chrUn_003:393162-393181 -
  18. v2_chrUn_051:363-382 +
  19. v2_chrUn_061:4017-4036 +
  20. v2_chrUn_380:85424-85443 +

Sense Strand Reads

GTATATACATATATGGTGGGGATTTACTTATCTCGGCAAAGCGCTGGAAGATCCGGCTCGAAGGACCAAAATGTAGAGACGTCGGGGGCCGGAAAAGCTGGTGTCGCAAATATTCCCAGAGTTTAATGAAACACAAGGTGTTGGAGTTCG
***********************************((...(((((((....((((((((....(((..............)))..))))))))....))))))).)).......************************************ 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 M043
female body
 M026
head
 GSM1528802
follicle cells		 V120
male body		 V058
head
 V052
head
 V046
embryo
................................................AGATCCGGCTCGAAGGACCA.................................................................................. 20 0 2 36.50 73 53 12 3 0 4 1 0 0
..................................................ATCCGGCTCGAAGGACCA.................................................................................. 18 0 20 33.25 665 0 330 167 45 9 65 46 3
...............................................CAGATCCGGCTCGAAGGACCA.................................................................................. 21 1 4 11.75 47 25 8 11 0 3 0 0 0
................................................AGATCCGGCTCGAAGGACC................................................................................... 19 0 2 5.50 11 10 0 1 0 0 0 0 0
........................TACTTATCTCGGCAAAGCGCTGGAAG.................................................................................................... 26 0 1 5.00 5 0 0 0 5 0 0 0 0
.........................................................................TAGGGACGTCGGGGGCAT........................................................... 18 3 20 3.15 63 0 40 1 0 22 0 0 0
..................................................ATCCGGCTCGAAGGACCG.................................................................................. 18 1 20 3.05 61 0 50 11 0 0 0 0 0
.................................................GATCCGGCTCGAAGGACCA.................................................................................. 19 0 16 2.38 38 19 10 4 0 5 0 0 0
....................................................................GAATGTGGAGACGTCGGCG............................................................... 19 3 20 2.20 44 0 43 0 0 0 1 0 0
.....................................................................AATGTGGAGACGTCGGCG............................................................... 18 2 11 2.18 24 0 20 0 0 3 1 0 0
..................................................AGCCGGCTCGAAGGACCA.................................................................................. 18 1 20 2.05 41 41 0 0 0 0 0 0 0
.....................................................CGGCTCGAAGGACCA.................................................................................. 15 0 20 2.00 40 0 0 0 40 0 0 0 0
........................................TCGCTGGTACATCCGGCTCGAAGGACCA.................................................................................. 28 3 2 1.00 2 0 0 2 0 0 0 0 0
......................TTTACTTATCTCGGCAAAGCGCTGGA...................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................TTACTTATCTCGGCAAAGCGCTGGA...................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
........................TACTTATCTCGGCGAAGCGCTGGAAG.................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................TCTCGGCAAAGCGCTGGAAGATCCGGC............................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................CAGATCCGGCTCGAAGGACC................................................................................... 20 1 4 1.00 4 1 0 3 0 0 0 0 0
................................TCGGCAAAGCGCTGGAAGATCCGGC............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................TCTCGGCAAAGCGCTGGAAGATCCGGCTC........................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................TGCAGATCCGGCTCGAAGGACCA.................................................................................. 23 2 3 0.67 2 2 0 0 0 0 0 0 0
..................................................ATCTGGCTCGAAGGACCA.................................................................................. 18 1 20 0.55 11 11 0 0 0 0 0 0 0
.............................................GGTAAATCCGGCTCGAAGGACC................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0
................................................AGATCCGCCTCGAAGGACCA.................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................AGATCCGGCTCGAAGGACCT.................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................AGCTCCGGCTCGAAGGACCA.................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................TCGAAGGACCAAAATGTAGAGACGTC................................................................... 26 0 4 0.50 2 1 0 0 0 1 0 0 0
................................................AGATCCGGCTCGAAGGACCG.................................................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................................................................................TAATGAAACACAAGGTGTTGGAGTT.. 25 0 2 0.50 1 0 0 0 1 0 0 0 0
.........................................................TCGAAGGACCAAAATGTAGAGAC...................................................................... 23 0 4 0.50 2 0 0 0 2 0 0 0 0
.........................................CGCTGGTACATCCGGCTCGAAGGACCA.................................................................................. 27 2 2 0.50 1 1 0 0 0 0 0 0 0
................................................AGATCCGGCTCGAAGGAC.................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0
................................................AGATCCGGCTAGAAGGACCA.................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................AGGTCCGGCTCGAAGGACCA.................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................GGTCAGATCCGGCTCGAAGGACCA.................................................................................. 24 3 7 0.43 3 3 0 0 0 0 0 0 0
...................................................TCCGGCTCGAAGGACCAA................................................................................. 18 0 20 0.40 8 1 5 2 0 0 0 0 0
................................................AGAGCCGGCTCGAAGGACCA.................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0 0
................................................AGATCCGCCTCGAAGGAC.................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0
.................................................GATCCGGCTCGAAGGACCG.................................................................................. 19 1 16 0.31 5 0 2 2 0 1 0 0 0
................................................ACATCCGGCTCGAAGGACCA.................................................................................. 20 1 16 0.31 5 4 0 0 0 0 1 0 0
.................................................GATCCGGCTCGAAGGACC................................................................................... 18 0 16 0.31 5 0 0 5 0 0 0 0 0
..................................................ATCCGGCTCGAAGGACCT.................................................................................. 18 1 20 0.30 6 0 1 5 0 0 0 0 0
.............................................TTAAGATCCGGCTCGAAGGACCA.................................................................................. 23 2 8 0.25 2 2 0 0 0 0 0 0 0
..............................................GTACATCCGGCTCGAAGGACCA.................................................................................. 22 2 8 0.25 2 1 0 0 0 1 0 0 0
.........................................................TCGAAGGACCAAAATGTCGAGAC...................................................................... 23 1 4 0.25 1 0 0 0 1 0 0 0 0
..........................................................CGAAGGACCAAAATGTAGAGACGTC................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0
...............................................CAGATCCGGCTCGAATGACCA.................................................................................. 21 2 5 0.20 1 1 0 0 0 0 0 0 0
...............................................CAGATCCGGCTCGAAGGACCG.................................................................................. 21 2 5 0.20 1 0 1 0 0 0 0 0 0
..................................................AGCTGGCTCGAAGGACCA.................................................................................. 18 2 20 0.20 4 4 0 0 0 0 0 0 0
...................................................................AAAATTTAGAGACGTCGGGGGCCC........................................................... 24 2 6 0.17 1 1 0 0 0 0 0 0 0
..................................................................CTAAATGTGGAGACGTCGG................................................................. 19 2 6 0.17 1 0 1 0 0 0 0 0 0
...............................................CAGATCCGGCTCGACGGACCA.................................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0
...............................................CAGATCCGGCTCGAAGGAAC................................................................................... 20 2 6 0.17 1 0 0 1 0 0 0 0 0
..................................................................CTTAATGTGGAGACGTCGG................................................................. 19 3 20 0.15 3 0 2 0 0 1 0 0 0
................................................................AACTGAATGTAGAGACGTCGG................................................................. 21 3 8 0.13 1 0 0 0 0 0 1 0 0
................................................ACATCCGGCTCGAAGGACC................................................................................... 19 1 16 0.13 2 1 0 0 0 0 0 1 0
.....................................................................AATGTGGAGACGTCGG................................................................. 16 1 9 0.11 1 0 0 0 0 0 1 0 0
.............................................TGAAAATCCGGCTCGAAGGACCA.................................................................................. 23 2 10 0.10 1 1 0 0 0 0 0 0 0
..................................................ATCCGTCTCGAAGGACCA.................................................................................. 18 1 20 0.10 2 0 0 1 0 0 1 0 0
................................................AGATCCGGCGCGACGGA..................................................................................... 17 2 10 0.10 1 0 0 0 0 0 1 0 0
..................................................ATCCGGCTCGACGGACCA.................................................................................. 18 1 20 0.10 2 0 0 1 0 0 1 0 0
.........................................................................TAGAGACGGCGGGGGCCGGAAAAG..................................................... 24 1 11 0.09 1 0 1 0 0 0 0 0 0
.........................................................................TAGAGACGACGGGGGCCGGAAA....................................................... 22 1 11 0.09 1 0 1 0 0 0 0 0 0
.......................................................................TGTAGAGACGTCGGGGGCCGGAA........................................................ 23 0 11 0.09 1 1 0 0 0 0 0 0 0
.............................................TGCAGATCCGGCTCGAAGGA..................................................................................... 20 2 14 0.07 1 1 0 0 0 0 0 0 0
....................................................................AAATGTGGAGACGTCGGCGC.............................................................. 20 3 15 0.07 1 0 1 0 0 0 0 0 0
.................................................................................TCGGGGGCCGGAAAAGCTGGTGTC............................................. 24 0 15 0.07 1 0 0 0 0 0 0 0 1
.................................................GATCCGGCTCGAAGGACAA.................................................................................. 19 1 16 0.06 1 0 0 0 0 0 1 0 0
..............................................GCAAATCCGGCTCGAAGGACCA.................................................................................. 22 2 17 0.06 1 0 1 0 0 0 0 0 0
.................................................GATCCGGCTCGAAGGACCC.................................................................................. 19 1 17 0.06 1 0 0 1 0 0 0 0 0
.............................................TGCACATCCGGCTCGAAGGACCA.................................................................................. 23 3 17 0.06 1 1 0 0 0 0 0 0 0
........................TACTTATCTCGGCAAAGCGCTGGA...................................................................................................... 24 0 17 0.06 1 0 1 0 0 0 0 0 0
.............................................................................GGCGTCGGGGGCCGGAAAAGTTGGTG............................................... 26 2 18 0.06 1 1 0 0 0 0 0 0 0
....................................................................AAATGTGGAGACGTCGGC................................................................ 18 2 18 0.06 1 0 1 0 0 0 0 0 0
...................................................TCTGGCTCGAAGGACCA.................................................................................. 17 1 20 0.05 1 0 0 0 0 0 1 0 0
..................................................AGCCGGCTCGAAGGCCCA.................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0
..................................................ATCCGGCTCGAAGGCCCA.................................................................................. 18 1 20 0.05 1 0 0 0 0 0 1 0 0
..................................................GTCCGGCTCGAAGGACCA.................................................................................. 18 1 20 0.05 1 0 1 0 0 0 0 0 0
...................................................TCCGGCTCGAAGGACAA.................................................................................. 17 1 20 0.05 1 0 0 0 0 0 1 0 0
.................................................GATCCGGCTCGAATGACCA.................................................................................. 19 1 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................CGTCGGGGGCCGGAAAAGCT................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
...................................................TCCGGCTCGAAGGACCAAAA............................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0
..................................................ATCCGGCTCGAAGGACCAAA................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0
..................................................ATCCGGTTCGAAGGACCA.................................................................................. 18 1 20 0.05 1 0 1 0 0 0 0 0 0
..................................................ATCCGGCTCGAACGACCA.................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0
...................................................TCCGGCTCGAAGGACCAAA................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................AAAGCTGGTGTCGAAAAG....................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................GTAGGGACGTCGGGGGCAT........................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
..................................................ATCCGGCTCGAAGGAC.................................................................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0
..................................................ATCCCGCTCGAAGGACCA.................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................ATCCGGCTCCAAGGACCA.................................................................................. 18 1 20 0.05 1 0 0 1 0 0 0 0 0
...................................................TCCGTCTCGAAGGACCA.................................................................................. 17 1 20 0.05 1 0 0 0 1 0 0 0 0
..................................................ATCCGGCCCGAAGGACCA.................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CATATATGTATATACCACCCCTAAATGAATAGAGCCGTTTCGCGACCTTCTAGGCCGAGCTTCCTGGTTTTACATCTCTGCAGCCCCCGGCCTTTTCGACCACAGCGTTTATAAGGGTCTCAAATTACTTTGTGTTCCACAACCTCAAGC
************************************((...(((((((....((((((((....(((..............)))..))))))))....))))))).)).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V120
male body
......................ATATGTATAGAGCCGTTTCGCGACCT...................................................................................................... 26 2 2 0.50 1 1 0 0 0
...................................................................................................CCACAGCGTTTATAAGGGTCTTAAAT......................... 26 1 17 0.35 6 0 6 0 0
...................................................................................................CCACAGCGTTTATAAGGGTCTCAAAT......................... 26 0 10 0.30 3 3 0 0 0
.........................................................................AGCGCTGCAGCCCCCG............................................................. 16 2 20 0.25 5 0 0 5 0
.....................................................................TTACATCTCTGCAGCCCCCGGCCTTTT...................................................... 27 0 6 0.17 1 0 1 0 0
.............................................................................................TTTCGACCACAGCGTTTATAAGGGT................................ 25 0 9 0.11 1 1 0 0 0
........................................................................................................GCGTTTATAAGGGTCTCAAATTACTTT................... 27 0 10 0.10 1 1 0 0 0
...................................................................................................CCACAGCGTTTATAAGGGTCTCAAGT......................... 26 1 10 0.10 1 0 1 0 0
...................................................................................................CCACAGCGTTTATAAGGTTCTCAAAT......................... 26 1 10 0.10 1 1 0 0 0
...................................................................................................CCACAGCGTTTATAAGGGTCTCAAA.......................... 25 0 10 0.10 1 1 0 0 0
.........................................................................................................CGTTTATAAGGGTCTCAAATTACT..................... 24 0 10 0.10 1 0 1 0 0
............................................................................................................TTATAAGGGTCTCAAATTACTTTGT................. 25 0 11 0.09 1 1 0 0 0
...............................................................................................................TAAGGGTCTCAAATTACT..................... 18 0 11 0.09 1 1 0 0 0
............................................................................................................TTATAAGGGTCTCAAATTACTTT................... 23 0 11 0.09 1 1 0 0 0
.......................................................................ACATCTCTGCAGCCCCCGGCCTTTTCG.................................................... 27 0 11 0.09 1 1 0 0 0
..............................................................................................................ATAAGGGTCTCAAATTACTTTGT................. 23 0 11 0.09 1 1 0 0 0
...................................................................................CCCCCGGCCTTTTCGACCACAGCGT.......................................... 25 0 12 0.08 1 1 0 0 0
...................................................................................................CCACAGCGTTCATAAGGGACTCAAAT......................... 26 2 17 0.06 1 0 1 0 0
...................................................................................................CCACAGCGTTCATAAGGGTCTCAAAT......................... 26 1 17 0.06 1 0 1 0 0
...................................................................................................CCACAGCGTTTATAAGGGTCTTTAAT......................... 26 2 17 0.06 1 0 1 0 0
.............................................................................CTGCAGCCCCCGGCCTTTTCGAC.................................................. 23 0 20 0.05 1 1 0 0 0
....................................................................................CCCCGGCCTTTTCGACAACAGCGTT......................................... 25 1 20 0.05 1 1 0 0 0
.................................................CTAGGCCGAGGGTCGTGGTTT................................................................................ 21 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 v2_chr2L_random_010:984-1133 + dya_126 GTATATACATATA----T--GGTGGGGAT---------TTACTTATCTC------------------GG--CAAAGCGCTGGA-AGATCCGGCTCGAAGGACCAAAATG-TAG--AGACGTCGGGGGCCGGAAAA-GCTGGT-GTCGCAAATATTCCCAGAGTTTAATGAAACACAAGGTGT-TGGA----------------------GTTCG---------
droSec2 scaffold_41:252380-252464 - AAAAATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACCAAAATG-TTA--GGATGATGGGGTTTG-------CTGG-TCCT-GGAAAA-TTCCT-AGTTTGCTGAAA---------------------------------------------------
droSim2 node_20880:3117-3197 - CCA------------------------------------------------------------------------------GG-AGATCCGGGTCGAAGGACCAAAAAA-TGATGGGTTGTTGGGGGTTG-------CTGG-TCCT-GGAATT-TTCCA-AATTTGCTGAAA---------------------------------------------------
dm3 chr2L:21544491-21544581 + AAAAATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACCAAAATG---ATGGGGTGATGGGGGGTG-------CTGG-TCCT-GGAAAA-TTCCT-AGTTTGCTGAAAAAAAAG---------------------------------------------
droEug1 scf7180000407740:8711-8880 - GGAAATTT-----------------------CGGCACCGTACTTATCTT----------------G-GC--GAAAGCGCTGAA-ATATCCGGGTTGAAGGACCAAAAAA-TGA--ATCTGTCGGGGGCCTGGC-AGGTGCGGTCCC--AAATT-TTCCA-AAGCAGA--AAATAGAAAGACTGGTGATGATTTGGCGTGGCGACGATCCGTTTCGTTCGGGTT
droTak1 scf7180000413672:1101-1176 - GGAAATCTA-----------------------------------------------CCGGT-GCCGCTG--GAAATCGCAGAT-CGATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGGGTTGG--------------------------------------------------------------------------------------------
droEle1 scf7180000489719:165-244 + TGACGGAA-------------------AT---------CTA---------------CCGGT-GCCGCTG--GAAATCGCAGAT-CGATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGGGTTGG--------------------------------------------------------------------------------------------
droRho1 scf7180000777636:1040-1090 + --------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGCGTCGGGGAT-GATCGT---------------------------------------------------------------------------------
droKik1 scf7180000298785:411-581 + GTACATACATATA----T--GATGGGAATTTTGGCACCGTACTTATCTT----------------G-GCAAAAAAGCGCTGGA-ATATCCGGCTCGAAGGACCAAAA-A-TGA--AGCTTTCGGGGGCCGTGGCA-GTACGATTCC-AAAAGA-TTCCC-AA----------CAAAAAGAGT-TCGATGGGTTGACTGGATGACGATCCGTTGA---------
droAna3 scaffold_13045:779657-779677 - G-------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAA---------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394825:65446-65523 - --------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAAATGTTGT--AG---GGGGGCCTTGC-------TGC-CGCA-AGA-GA-TTCCAGGAGTAGATTAAATGAGAAGT-------------------------------------------
dp5 Unknown_singleton_2659:918-966 + GGTGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGCTCGAAGGACCAA----------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_72:136083-136146 - AGGCTTCTC-----------------------------------------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGCTCGAAGGACCAATGGT-TGT--AG------GGGGGCGGA-------------------------------------------------------------------------------------------
droWil2 scf2_1100000014405:381-434 + GGAAT---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAAGGACCAATGTT-CGT--GG------AGGGGCGGA---------------------------------------A---------------------------------------------------
droVir3 scaffold_12100:103819-103852 - TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACCAAATGA-TGT--AG----------------------------------------------------------------------------------------------------------
droMoj3 scaffold_4207:7945-8054 + ATATATGCAAGTTGCAGTGAGATG-AAATGCAAGCAA-TTACTTATCTGAGTACTCCCAATCGCTGGTA--AATATGGTGGATGATATCCGGCTCGAAGGACCAAAATG-TGC--AG----------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GTATATACATATA----T--GGTGGGGAT---------TTACTTATCTC------------------GG--CAAAGCGCTGGA-AGATCCGGCTCGAAGGACCAAAATG-TAG--AGACGTCGGGGGCCGGAAAA-GCTGGT-GTCGCAAATATTCCCAGAGTTTAATGAAACACAAGGTGT-TGGA----------------------GTTCG---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................AGATCCGGCTCGAAGGACCA.......................................................................................................................20236.50733125300140000
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................182033.25665167330034665900045
....................................................................................AGATCCGGCTCGAAGGACC........................................................................................................................1925.5011101000000000
.......................................TACTTATCTC------------------GG--CAAAGCGCTGGA-AG.........................................................................................................................................2615.00500000000005
......................................................................................ATCCGGCTCGAAGGACCG.......................................................................................................................18203.05611150000000000
.....................................................................................GATCCGGCTCGAAGGACCA.......................................................................................................................19162.38384101900050000
.........................................................................................CGGCTCGAAGGACCA.......................................................................................................................15202.0040000000000040
............................T---------TTACTTATCTC------------------GG--CAAAGCGCTGGA-...........................................................................................................................................2611.00101000000000
......................................TTACTTATCTC------------------GG--CAAAGCGCTGGA-...........................................................................................................................................2511.00101000000000
.............................................TCTC------------------GG--CAAAGCGCTGGA-AGATCCGGC..................................................................................................................................2711.00101000000000
...............................................TC------------------GG--CAAAGCGCTGGA-AGATCCGGC..................................................................................................................................2511.00100100000000
.............................................TCTC------------------GG--CAAAGCGCTGGA-AGATCCGGCTC................................................................................................................................2911.00100100000000
....................................................................................AGATCCGGCTCGAAGGACCT.......................................................................................................................2020.50100100000000
.............................................................................................TCGAAGGACCAAAATG-TAG--AGACGTC.....................................................................................................2640.50200100010000
....................................................................................AGATCCGGCTCGAAGGACCG.......................................................................................................................2020.50110000000000
....................................................................................................................................................................TAATGAAACACAAGGTGT-TGGA----------------------GTT...........2520.50100000000001
.............................................................................................TCGAAGGACCAAAATG-TAG--AGAC........................................................................................................2340.50200000000002
....................................................................................AGATCCGGCTCGAAGGAC.........................................................................................................................1820.50110000000000
.......................................................................................TCCGGCTCGAAGGACCAA......................................................................................................................18200.40825100000000
.....................................................................................GATCCGGCTCGAAGGACCG.......................................................................................................................19160.31522000010000
.....................................................................................GATCCGGCTCGAAGGACC........................................................................................................................18160.31550000000000
......................................................................................ATCCGGCTCGAAGGACCT.......................................................................................................................18200.30651000000000
..............................................................................................CGAAGGACCAAAATG-TAG--AGACGTC.....................................................................................................2540.25100100000000
...........................................................................................................TG-TAG--AGACGTCGGGGGCCGGAA..........................................................................................23110.09100100000000
........................................................................................................................TCGGGGGCCGGAAAA-GCTGGT-GTC.............................................................................24150.07100010000000
.....................................................................................GATCCGGCTCGAAGGACCC.......................................................................................................................19170.06110000000000
.......................................TACTTATCTC------------------GG--CAAAGCGCTGGA-...........................................................................................................................................24170.06101000000000
......................................................................................................................CGTCGGGGGCCGGAAAA-GCT....................................................................................20200.05100100000000
.......................................................................................TCCGGCTCGAAGGACCAAAA....................................................................................................................20200.05100000010000
......................................................................................ATCCGGCTCGAAGGACCAAA.....................................................................................................................20200.05100000100000
.......................................................................................TCCGGCTCGAAGGACCAAA.....................................................................................................................19200.05101000000000
......................................................................................ATCCGGCTCGAAGGAC.........................................................................................................................16200.05100000100000
droSec2
AAAAATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACCAAAATG-TTA--GGATGATGGGGTTTG-------CTGG-TCCT-GGAAAA-TTCCT-AGTTTGCTGAAA---------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................TATCCGGCTCGAAGGACCA.......................................................................................................................19204.8597030670
.........................................................................................................AATG-TTA--GGATGATGGGGTTTG-------CTG...................................................................................2520.5010010
...........................................................................................................TG-TTA--GGATGATGGGGTTTG-------CTGG-.................................................................................2470.4332100
...............................................................................................................TA--GGATGATGGGGTTTG-------CTGG-TCC..............................................................................2470.4332010
.............................................................................................TCGAAGGACCAAAATG-TTA--GGATGAT.....................................................................................................2650.2011000
...........................................................................................................TG-TTA--GGATGATGGGGTTTG-------CTG...................................................................................2370.1410001
...............................................................................................................TA--GGATGATGGGGTTTG-------CTGG-TCCT-GGA.........................................................................2870.1411000
...........................................................................................................TG-TTA--GGATGATGGGGTTTG-------CTGG-A................................................................................2570.1411000
.......................................................................................TCCGGCTCGAAGGACCAAAATG-TTA--............................................................................................................25200.1022000
.....................................................................................................................ATGATGGGGTTTG-------CTGG-TCCT-............................................................................21100.1010010
................................................................................................................................TG-------CTGG-TCCT-GGAAAA-TTC..................................................................19200.1020020
......................................................................................................................TGATGGGGTTTG-------CTGG-TCCT-GG..........................................................................22110.0911000
......................................................................................................................TGATGGGGTTTG-------CTGG-TCCT-GGAAA.......................................................................25110.0911000
.......................................................................................TCCGGCTCGAAGGACCAAAATG-T................................................................................................................23200.0510010
................................................................................................................................TG-------CTGG-TCCT-GGAAAA-TTCC.................................................................20200.0511000
.........................................................................................CGGCTCGAAGGACCAAAATG-TTA--GG..........................................................................................................25200.0510010
droSim2
CCA------------------------------------------------------------------------------GG-AGATCCGGGTCGAAGGACCAAAAAA-TGATGGGTTGTTGGGGGTTG-------CTGG-TCCT-GGAATT-TTCCA-AATTTGCTGAAA---------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTGT......................................................................................................27338.00114003100271334728100000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTGTT.....................................................................................................28312.67380002001561203000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGT.........................................................................................................2439.6729000000105509000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTG.......................................................................................................2639.3328000000338210020000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTT........................................................................................................2537.002100100036505010000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGTTGGG..................................................................................................2736.672000000067610000000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGTTGGGG.................................................................................................2835.001500000067200000000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGTTGG...................................................................................................2634.001200000062400000000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------C.....................................................................................21103.9039000000201150237000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------......................................................................................20103.2032000000025020185000
..............................................................................................CGAAGGACCAAAAAA-TGATGGGTTGT......................................................................................................2633.00900000031203000000
..............................................................................................CGAAGGACCAAAAAA-TGATGGGTTGTT.....................................................................................................2733.00900000050400000000
...............................................................................................GAAGGACCAAAAAA-TGATGGGTTGT......................................................................................................2533.00900000000306000000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGTTG....................................................................................................2533.00900000031212000000
...............................................................................................GAAGGACCAAAAAA-TGATGGGTTGTT.....................................................................................................2632.33700000001114000000
.............................................................................................TCGAAGGACCAAAAAA-TGATG............................................................................................................2132.33700000000007000000
..............................................................................................CGAAGGACCAAAAAA-TGATGGGTTG.......................................................................................................2532.00600000001113000000
.......................................................................................................AAAAAA-TGATGGGTTGT......................................................................................................1741.50600000000006000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GGAATT-TTC..................................................................2651.40700000000106000000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGTTGGG..................................................................................................2831.33400000011200000000
....................................................................................................ACCAAAAAA-TGATGGGTTGT......................................................................................................2031.33400000000004000000
.............................................................................................TCGAAGGACCAAAAAA-TGAT.............................................................................................................2031.33400000000112000000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------CTG...................................................................................2391.111000000012113011000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGTT.....................................................................................................2531.00300000000001020000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGTT.....................................................................................................2431.00300000010101000000
CCA------------------------------------------------------------------------------GG-AGATCCGGGTCGAAGGACCAAAA....................................................................................................................2811.00100000000100000000
.............................................................................................TCGAAGGACCAAAAAA-T................................................................................................................1731.00300000000003000000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------CT....................................................................................22101.001000000060310000000
..............................................................................................CGAAGGACCAAAAAA-TGATGGGT.........................................................................................................2330.67200000020000000000
....................................................................................................ACCAAAAAA-TGATGGGTTGTTGGG..................................................................................................2430.67200000001010000000
....................................................................................................ACCAAAAAA-TGATGGGTTGTTGGGGG................................................................................................2630.67200000000110000000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGTTGG...................................................................................................2730.67200000001100000000
.............................................................................................TCGAAGGACCAAAAAA-TG...............................................................................................................1830.67200000000002000000
.................................................................................................AGGACCAAAAAA-TGATGGGTTGT......................................................................................................2330.67200000010001000000
.....................................................................................................CCAAAAAA-TGATGGGTTGT......................................................................................................1930.67200000000002000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------CTGG-.................................................................................2130.67200000000002000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGG..........................................................................................................2330.67200000010001000000
.......................................................................................................AAAAAA-TGATGGGTTGTTGGGGGT...............................................................................................2440.50200000000000020000
............................................................................................................................................G-TCCT-GGAATT-TTCCA-AATTTGCTGA.....................................................2620.50100000001000000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------CTGG-T................................................................................2220.50100000000001000000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------CA....................................................................................22100.50500000000000023000
.......................................................................................................AAAAAA-TGATGGGTTGTTGGG..................................................................................................2140.50200000010000010000
..............................................................................................................TGATGGGTTGTTGGGGGTT..............................................................................................19150.47700000001103011000
..............................................................................................................TGATGGGTTGTTGGGGGT...............................................................................................18150.47700000011104000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------CTG...................................................................................20100.40400000000001030000
..............................................................................................................TGATGGGTTGTTGGGG.................................................................................................16150.40600000010005000000
.........................................................................................................................TGGGGGTTG-------CTGG-TC...............................................................................15110.36400000000004000000
................................................................................................AAGGACCAAAAAA-TGATGGGTT........................................................................................................2230.33100000010000000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTA.......................................................................................................2630.33100000000000010000
...................................................................................................GACCAAAAAA-TGATGGGTTGTTGGG..................................................................................................2530.33100000001000000000
..............................................................................................CGAAGGACCAAAAAA-TGATGGG..........................................................................................................2230.33100000000001000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTGTTGGG..................................................................................................3130.33100000010000000000
...................................................................................................GACCAAAAAA-TGATGGGTTGTTGG...................................................................................................2430.33100000000100000000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGT......................................................................................................2430.33100000000001000000
.....................................................................................................................TTGTTGGGGGTTG-------CTGG-.................................................................................1730.33100000000001000000
...............................................................................................GAAGGACCAAAAAA-TGATGGGTTG.......................................................................................................2430.33100000000001000000
...............................................................................................GAAGGACCAAAAAA-TGATGGGTT........................................................................................................2330.33100000000010000000
....................................................................................................ACCAAAAAA-TGATGGGTTGTTG....................................................................................................2230.33100000000001000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTGC......................................................................................................2730.33100000000001000000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGTTGGGG.................................................................................................2930.33100000010000000000
................................................................................................AAGGACCAAAAAA-TGATGGGTTGCA.....................................................................................................2530.33100000000001000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGGGTTGTTG....................................................................................................2930.33100000000100000000
....................................................................................................ACCAAAAAA-TGATGGGTTGTTGG...................................................................................................2330.33100000010000000000
.............................................................................................TCGAAGGACCAAAAAA-TGATGG...........................................................................................................2230.33100000000000010000
.............................................................................................TCGAAGGACCAAAAAA-TGA..............................................................................................................1930.33100000010000000000
..................................................................................................GGACCAAAAAA-TGATGGGTTGTTGG...................................................................................................2530.33100000010000000000
..............................................................................................CGAAGGACCAAAAAA-TGATG............................................................................................................2030.33100000000001000000
.................................................................................................................................................T-GGAATT-TTCCA-AATTTGCTGA.....................................................2230.33100000000100000000
..............................................................................................................................GTTG-------CTGG-TCCT-GGA.........................................................................15200.30600000060000000000
..............................................................................................................TGATGGGTTGTTGGG..................................................................................................15150.27400000001003000000
..............................................................................................................TGATGGGTTGTTGGGGG................................................................................................17150.27400000000003010000
........................................................................................................AAAAA-TGATGGGTTGTTGGG..................................................................................................2040.25100000000000010000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGGGGT...............................................................................................2540.25100000010000000000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGGGT................................................................................................2440.25100000001000000000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGGGAA...............................................................................................2540.25100000000000010000
.......................................................................................................AAAAAA-TGATGGGTTGTTGGGGGTTG-------CT....................................................................................2840.25100000010000000000
.........................................................................................................AAAA-TGATGGGTTGTTGGGGGTTG-------C.....................................................................................2540.25100000000000001000
...........................................................................................................AA-TGATGGGTTGTTGGGGGTTG-------......................................................................................2240.25100000000000010000
...........................................................................................................AA-TGATGGGTTGTTGGGGG................................................................................................1940.25100000000000001000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGG..................................................................................................2240.25100000000000010000
.......................................................................................................AAAAAA-TGATGGGTTGTTGGGGG................................................................................................2340.25100000001000000000
........................................................................................................AAAAA-TGATGGGTTGTTGGGGGTT..............................................................................................2440.25100000000100000000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGAAA................................................................................................2440.25100000000000010000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGGGG................................................................................................2440.25100000010000000000
........................................................................................................AAAAA-TGATGGGTTGTTGGGG.................................................................................................2140.25100000000000010000
.......................................................................................................AAAAAA-TGATGGGTTGTTG....................................................................................................1940.25100000000001000000
.............................................................................................TCGAAGGACCAAAAAA-TGG..............................................................................................................1940.25100100000000000000
.......................................................................................................AAAAAA-TGATGGGTTGTTC....................................................................................................1940.25100000000001000000
........................................................................................................AAAAA-TGATGGGTTGT......................................................................................................1640.25100000000001000000
......................................................................................................CAAAAAA-TGATGGGTTGTTGGGG.................................................................................................2340.25100000000000010000
.......................................................................................................AAAAAA-TGATGGGTTGTT.....................................................................................................1840.25100000000001000000
...........................................................................................................AA-TGATGGGTTGTTGGGGGTTG-------C.....................................................................................2340.25100000000000010000
..............................................................................................................TGATGGGTTGTTGGGGGTTG-------A.....................................................................................21100.20200000000000011000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GGAATT-T....................................................................2450.20100000000001000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GGAAT.......................................................................2250.20100000000001000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCC..............................................................................16110.18200000000002000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------C.....................................................................................18110.18200000000002000000
...............................................................................................................GATGGGTTGTTGGGGG................................................................................................16150.13200000000002000000
................................................................................................................ATGGGTTGTTGGGGGTTG-------CTG...................................................................................21100.10100000000100000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GG..........................................................................19100.10100000000001000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GGA.........................................................................20100.10100000000001000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-GGAA........................................................................21100.10100000000001000000
..................................................................................................................GGGTTGTTGGGGGTTG-------C.....................................................................................17110.09100000000001000000
................................................................................................................ATGGGTTGTTGGGGGTTG-------C.....................................................................................19110.09100000000001000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------CTT...................................................................................20110.09100000000100000000
.................................................................................................................TGGGTTGTTGGGGGTTG-------CT....................................................................................19110.09100000000001000000
.........................................................................................................................TGGGGGTTG-------CTGG-TCCT-............................................................................17110.09100000000001000000
...............................................................................................................GATGGGTTGTTGGGGGT...............................................................................................17150.07100000001000000000
..............................................................................................................TGATGGGTTGTTGGGGGTTA-------A.....................................................................................21150.07100000000000010000
..............................................................................................................TGATGGGTTGTTGGGGGTTA-------......................................................................................20150.07100000000000010000
.................................................................................................................TGGGTTGTTGGGGGT...............................................................................................15160.06100000000001000000
.................................................................................................................TGGGTTGTTGGGGGTT..............................................................................................16160.06100000000001000000
dm3
AAAAATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACCAAAATG---ATGGGGTGATGGGGGGTG-------CTGG-TCCT-GGAAAA-TTCCT-AGTTTGCTGAAAAAAAAG---------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................1820552.501105000000000000000000000000000000000001004800000008000000000000070000000000000000000000000134000041400000000000000004289000022000000000220000002702000000000000000000000000000002176000000000018000001200000078000000000101100000260220010007066643600000000001100000000000000001480000002280301000000083200000000000000000000000000000000000000001400160003600370000680000004200061000
....................................................................................ATATCCGGCTCGAAGGACCA.......................................................................................................................202049.709940000001000000000000006210000000000080310301200001213410000000000000000000000072340015010401730421150051211310410210000000000000000000000000028340067002243503331000003000004302400010300000008000134221003350000009900000020021191443531180711392385600500001201000000101000010000100010100000000000000000000010110002000000000320000002011012330113701020
.......................................................................................TCCGGCTCGAAGGACCA.......................................................................................................................172029.255850000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005280005700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACC........................................................................................................................182029.05581000000000000000000000010000000000000000000000000000000000100000000000000000001021000000000000000000003000000010000000000000000000000159000000000000000000000000000000000000000000000000000000100000000001730036200000000000260010001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................TCGAAGGACCAAAATG---ATGGGGTGA......................................................................................................25128.00280000000000000000000000000000000000001000010010000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000010000001200000000000000000000000000000000000000100000000000000000000040000300300100000000000000000000000000000000000000000000000000000000000000001000001002001000200000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACCA.......................................................................................................................192023.554710000000000000000000000000020000000000000000000010222020000000000000000000000000000000500504402000014000000180001220000000000000000000100120000005220000020000500000060040050000001201001002000050000000000000010000000300009301300004075738800300000001000000001000000110000001000100000000001010000000004000000000000000601020301000002000003000
.......................................................................................TCCGGCTCGAAGGACCAAAATG---ATGGGGT........................................................................................................29119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACCAAAATG---A..............................................................................................................25119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000001200000000000000010402420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....ATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGAC.........................................................................................................................251917.58334000000000000000000000010000000000000100000002000010000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000010000000030040000000000000000000000000000000001000100000644746169901000000000100011416450000000000000000000000000000000000000000000000000000000000000000001010000000340000000000000000353000000
................................................................................................AAGGACCAAAATG---ATGGGGTGATGG...................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000200010000120000000000000000000000000000000000000000000010000000000000001000000010000000000000000000000000000000000
............................................................................................CTCGAAGGACCAAAATG---A..............................................................................................................18113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCCGGCTCGAAGGACCAAAATG---ATGGG..........................................................................................................27112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000000000000000000000000000000000000000000000000000000010000000000010120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.....................................................................................TATCCGGCTCGAAGGACCAAAATG---...............................................................................................................242011.502300000000000000000000001220000000000001000300010000000000000000000000000000000000000400020000000000000000000000000000000000000000000302036000611201201133023450000000000000000000000000100000001000600200420170201021120003000161281231901000000000000000000000000000000000000000000000000000000000001000011013000000344000000000000001210000000
.......CA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACC........................................................................................................................231910.53200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422419327900000000000000000010010000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000
..................................................................................G-ATATCCGGCTCGAAGGAC.........................................................................................................................192010.4020800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100059390347200000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCCGGCTCGAAGGACCAAAATG---ATGGGG.........................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000010030000000100001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGAC.........................................................................................................................24198.681650000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000120000311001000010021020000000000000000000000000000000000000100000192116223601000000000000010203300000000000000000000000000000000000000000000000000000000000000000000102000000510000000000000001121000000
......................................................................................................CAAAATG---ATGGGGTGATGGG..................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................TCGAAGGACCAAAATG---ATGGGGTGATG....................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000300000000000020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TCGAAGGACCAAAATG---ATGGGGT........................................................................................................2316.0060000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................G-ATATCCGGCTCGAAGGACC........................................................................................................................20205.90118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311314134500000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATATCCGGCTCGAAGGACC........................................................................................................................19205.85117000000000000000000000000000000000000000000000001000001000000000000000000000000000000000010000000000010002000000000000000000000000000010000000000000001000000000000000000000000010000000000003000000100138861800000000000320111301900010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000
......................................................................................ATCCGGCTCGAAGGACCG.......................................................................................................................18205.601120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000012000100001600000000000000100000000000000000001000
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...AATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGG...........................................................................................................................24190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000
.AAAATCCA------------------------------------------------------------------------GG-ATATCCGGC..................................................................................................................................19190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000200000000000000000000000000000000000
.................................................................................GG-ATATCCGGCTCGAAGGACCAAAA....................................................................................................................25190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCCA------------------------------------------------------------------------GG-ATATCCGGCTCGAAGGACCA.......................................................................................................................27190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001110000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEug1
GGAAATTT-----------------------CGGCACCGTACTTATCTT----------------G-GC--GAAAGCGCTGAA-ATATCCGGGTTGAAGGACCAAAAAA-TGA--ATCTGTCGGGGGCCTGGC-AGGTGCGGTCCC--AAATT-TTCCA-AAGCAGA--AAATAGAAAGACTGGTGATGATTTGGCGTGGCGACGATCCGTTTCGTTCGGGTTSizeHit CountTotal NormTotal
No Reads
droTak1
GGAAATCTA-----------------------------------------------CCGGT-GCCGCTG--GAAATCGCAGAT-CGATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGGGTTGG--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGACGGAA-------------------AT---------CTA---------------CCGGT-GCCGCTG--GAAATCGCAGAT-CGATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGGGTTGG--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAAA-A-TGA--AGAGGTGGGGCGTCGGGGAT-GATCGT---------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTACATACATATA----T--GATGGGAATTTTGGCACCGTACTTATCTT----------------G-GCAAAAAAGCGCTGGA-ATATCCGGCTCGAAGGACCAAAA-A-TGA--AGCTTTCGGGGGCCGTGGCA-GTACGATTCC-AAAAGA-TTCCC-AA----------CAAAAAGAGT-TCGATGGGTTGACTGGATGACGATCCGTTGA---------SizeHit CountTotal NormTotal
No Reads
droAna3
G-------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAA---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
G-------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCA.......................................................................................................................19204.40880020860
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................18203.75750000750
G-------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCG.......................................................................................................................19201.15232300000
......................................................................................ATCCGGCTCGAAGGACCG.......................................................................................................................18200.306000600
G-------------------------------------------------------------------------------------ATCCGGCTCGAAGGACTG.......................................................................................................................19200.051100000
droBip1
--------------------------------------------------------------------------------------ATCCGGCTCGAAGGACCAAAATGTTGT--AG---GGGGGCCTTGC-------TGC-CGCA-AGA-GA-TTCCAGGAGTAGATTAAATGAGAAGT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GGTGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGCTCGAAGGACCAA----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................18204.90982702542400000
.....................................................................................GATCCGGCTCGAAGGACCA.......................................................................................................................19204.158386534010110
....................................................................................AGATCCGGCTCGAAGGACCA.......................................................................................................................20202.805623750039000
.....................................................................................GATCCGGCTCGAAGGACC........................................................................................................................18200.951931510000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................23190.68130810001300
...........................................................................GCG----A-AGATCCGGCTCGAAGGACC........................................................................................................................23200.4080800000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGG...................................................................................................................................................23130.3140400000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGGC..................................................................................................................................................24130.3140400000000
.......................................................................................TCCGGCTCGAAGGACCAA----------------------------------------------------------------------------------------------------------------------18200.3060600000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................27180.2850410000000
............................................................T----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................21190.2650400100000
.......................................................................................TCCGGCTCGAAGGACCAC----------------------------------------------------------------------------------------------------------------------18200.2550500000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCTC................................................................................................................................25190.2140300001000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................26180.1730300000000
........................................................................AAGGCG----A-AGATCCGGCTCGAAGGAC.........................................................................................................................25180.1730200001000
........................................C---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................26180.1730300000000
.........................................................TTAT----G-GG--GAAGGCG----A-AGATCCGGCT.................................................................................................................................25190.1630200000010
............................................................T----G-GG--GAAGGCG----A-AGATCCGGCTC................................................................................................................................23190.1630300000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................22190.1630300000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--G.......................................................................................................................................................19130.1520200000000
....................................................................................AGATCCGGCTCGAAGGACC........................................................................................................................19200.1530030000000
......................................................................................ATCCGGCTCGAAGGACCAA----------------------------------------------------------------------------------------------------------------------19200.1530300000000
......................................................................................ATCCGGCTCGAAGGACCAT----------------------------------------------------------------------------------------------------------------------19200.1530300000000
...........................................................................GCG----A-AGATCCGGCTCGAAGGACCA.......................................................................................................................24200.1530300000000
......................................................................................ATCCGGCTCGAAGGACCT.......................................................................................................................18200.1530300000000
........................................................................AAGGCG----A-AGATCCGGCTCGAAGG...........................................................................................................................23180.1120200000000
........................................................................AAGGCG----A-AGATCCGGCTCGAAGGACC........................................................................................................................26180.1120110000000
.......................................................................GAAGGCG----A-AGATCCGGCTCGAAGG...........................................................................................................................24180.1120200000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCG....................................................................................................................................21190.1120200000000
.........................................................TTAT----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................23190.1120200000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCT.................................................................................................................................24190.1120200000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCTT................................................................................................................................25190.1120200000000
...........................................................AT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................22190.1120200000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AG.........................................................................................................................................20200.1020200000000
...........................................................................GCG----A-AGATCCGGCTCGAAGGA..........................................................................................................................21200.1020200000000
......................................CTC---------------CTTAT----G-GG--GAAGGCG----A-AGA........................................................................................................................................22200.1020200000000
.GTGAGCT--------------------T---------CTC---------------CTTAT----G-GG--G.......................................................................................................................................................20130.0810000001000
GGTGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAA.....................................................................................................................................................23130.0810000001000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAG....................................................................................................................................................22130.0810100000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGTT..................................................................................................................................................24130.0810100000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GA......................................................................................................................................................20130.0810100000000
...GAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAG.....................................................................................................................................................20130.0810100000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGGCG----.............................................................................................................................................25130.0810100000000
...GAGCT--------------------T---------CTC---------------CTTAT----G-GG--GAAGGC..................................................................................................................................................23130.0810100000000
..TGAGCT--------------------T---------CTC---------------CTTAT----G-GT--A.......................................................................................................................................................19160.0610100000000
......................................CTC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................28180.0610100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATC......................................................................................................................................23180.0610100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGATC......................................................................................................................................25180.0610100000000
........................................C---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................25180.0610100000000
........................................C---------------CTTAT----G-GG--GAAGGCG----A-AGATCC.....................................................................................................................................23180.0610010000000
.......................................................................GAAGGCG----A-AGATCCGGCTCGAAG............................................................................................................................23180.0610100000000
........................................C---------------CTTAT----G-GG--GAAGGCG----A-AGATCCG....................................................................................................................................24180.0610100000000
............................................................T----G-GG--GAAGGCG----A-AGATCCGGCTCGAAG............................................................................................................................27180.0610000000100
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCGTT..................................................................................................................................27180.0610100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATCCG....................................................................................................................................25180.0610100000000
......................................CTC---------------CTTAT----G-GG--GAAGGCG----A-AGATCC.....................................................................................................................................25180.0610100000000
............................................................T----G-GG--GAAGGCG----A-AGATCCGGCTT................................................................................................................................23190.0510100000000
............................................................T----G-GG--GAAGGCG----A-AGATCCGGCT.................................................................................................................................22190.0510000100000
............................................................T----G-GG--GAAGGCG----A-AGATCCG....................................................................................................................................19190.0510100000000
.................................................................G-GG--GAAGGCG----A-AGATCCGT...................................................................................................................................19190.0510100000000
........................................................................AAGGCG----A-AGATCCGGCTCGA..............................................................................................................................20190.0510100000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGT..................................................................................................................................23190.0510100000000
.........................................................TTAT----G-GG--GAAGGCG----A-AGATCCGGC..................................................................................................................................24190.0510000000100
...........................................................AT----G-GG--GAAGGCG----A-AGATCCGGCTC................................................................................................................................24190.0510100000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGT...................................................................................................................................22190.0510100000000
............................................................T----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................20190.0510100000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCTA................................................................................................................................25190.0510100000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCTTT...............................................................................................................................26190.0510010000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCA.................................................................................................................................24190.0510000000010
............................................................................CG----A-AGATCCGGCTCGAAGGAC.........................................................................................................................21200.0510100000000
.....................................................................................GATCCGGCTCGAAGGACCG.......................................................................................................................19200.0510100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-A..........................................................................................................................................19200.0510100000000
...........................................................................GCG----A-AGATCCGGCTCGAAGG...........................................................................................................................20200.0510100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGAT.......................................................................................................................................24200.0510100000000
...........................................................................GCG----A-AGATCCGGCTCGAAGA...........................................................................................................................20200.0510100000000
.......T--------------------T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AG.........................................................................................................................................23200.0510100000000
.......T--------------------T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGA........................................................................................................................................24200.0510100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGA........................................................................................................................................21200.0510100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AG.........................................................................................................................................22200.0510100000000
...........................................................................GCG----A-AGATCCGGCTCGAAGGACCTT----------------------------------------------------------------------------------------------------------------------25200.0510100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGAA.......................................................................................................................................24200.0510100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGATT......................................................................................................................................23200.0510100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-A..........................................................................................................................................21200.0510100000000
............................T---------CTC---------------CTTAT----G-GG--GAAGGCG----A-AGA........................................................................................................................................23200.0510100000000
.........................................................TTAT----G-GG--GAAGGCG----A-AGAT.......................................................................................................................................19200.0510100000000
...........................................................AT----G-GG--GAAGGCG----A-AGATC......................................................................................................................................18200.0510100000000
.......................................TC---------------CTTAT----G-GG--GAAGGCG----A-AGAT.......................................................................................................................................22200.0510100000000
............................................................................CG----A-AGATCCGGCTCGAAGGACC........................................................................................................................22200.0510100000000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCC.....................................................................................................................................20200.0510100000000
droPer2
AGGCTTCTC-----------------------------------------------CTTAT----G-GG--GAAGGCG----A-AGATCCGGCTCGAAGGACCAATGGT-TGT--AG------GGGGGCGGA-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................GATCCGGCTCGAAGGACCA.......................................................................................................................19201.25250250000
....................................................................................AGATCCGGCTCGAAGGACCA.......................................................................................................................20200.459900000
......................................................................................ATCCGGCTCGAAGGACCT.......................................................................................................................18200.153210000
......................................................................................ATCCGGCTCGAAGGACCAA......................................................................................................................19200.153000030
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGG...................................................................................................................................22200.102020000
........................................................................AAGGCG----A-AGATCCGGCTCGAAGGACC........................................................................................................................26200.051100000
.....TCTC-----------------------------------------------CTTAT----G-GG--GAAGGCG----A-AGATA......................................................................................................................................25200.051010000
..........................................................TAT----G-GG--GAAGGCG----A-AGATCCGGCTCG...............................................................................................................................26200.051010000
...........................................................................GCG----A-AGATCCGGCTCGAAGGACC........................................................................................................................23200.051100000
droWil2
GGAAT---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAAGGACCAATGTT-CGT--GG------AGGGGCGGA---------------------------------------A---------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................TATCCGGCTCGAAGGACCA.......................................................................................................................19201.4529290000
....................................................................................ATATCCGGCTCGAAGGACCA.......................................................................................................................20200.5511000110
..............................................................................GAAGG-ATATCCGGCTCGAAGG...........................................................................................................................21200.30606000
.............................................................................GGAAGG-ATATCCGGCTCGAAGGACCA.......................................................................................................................26200.30606000
.............................................................................................TCGAAGGACCAATGTT-CGT--GG------AGGGG...............................................................................................26200.20402020
....T---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAAG............................................................................................................................25200.15300030
............................................................................CGGAAGG-ATATCCGGCTCGAAG............................................................................................................................22200.10202000
.......................................................................................TCCGGCTCGAAGGACCAATGTT-CGT--GG------....................................................................................................27200.10202000
....T---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAAGG...........................................................................................................................26200.10200020
.................................................................................GG-ATATCCGGCTCGAAGGACCAATGT...................................................................................................................26200.05100010
................................................................................AGG-ATATCCGGCTCGAAGGACCAATG....................................................................................................................26200.05100010
............................................................................CGGAAGG-ATATCCGGCTCGAAGGACCA.......................................................................................................................27200.05101000
.............................................................................GGAAGG-ATATCCGGCTCGAAGGA..........................................................................................................................23200.05101000
....T---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAA.............................................................................................................................24200.05100010
........................................................................................CCGGCTCGAAGGACCAATGTT-CGT--G...........................................................................................................25200.05101000
..........................................................................................GGCTCGAAGGACCAATGTT-CGT--GG------AG..................................................................................................26200.05101000
..................................................................................................GGACCAATGTT-CGT--GG------AGGGGCGG............................................................................................24200.05101000
................................................................................AGG-ATATCCGGCTCGAAGGACC........................................................................................................................22200.05110000
.............................................................................................TCGAAGGACCAATGTT-CGT--GG------....................................................................................................21200.05101000
....T---------------------------------------------------------------------AGCGGAAGG-ATATCCGGCTCGAAGT...........................................................................................................................26200.05101000
..............................................................................GAAGG-ATATCCGGCTCGAAGGACCAA......................................................................................................................26200.05100010
.............................................................................GGAAGG-ATATCCGGCTCGAAGGAC.........................................................................................................................24200.05101000
..............................................................................GAAGG-ATATCCGGCTCGAAGGACCAATG....................................................................................................................28200.05101000
.....................................................................................................CCAATGTT-CGT--GG------AGGGG...............................................................................................18200.05101000
droVir3
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACCAAATGA-TGT--AG----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................182097.50195001650022003300267001380360400503420256016826206914801950010401910600000000000000000204000640
.....................................................................................TATCCGGCTCGAAGGACCA.......................................................................................................................191619.1930764225035000413171241132446381110111487181341912151552000000000000000000002185
.......................................................................................TCCGGCTCGAAGGACCAAA.....................................................................................................................19118.6495001100000010600000000000353100002201095270000000000000000000001000
.......................................................................................TCCGGCTCGAAGGACC........................................................................................................................16202.755500000000000000000000000000000000000000000200400000000150000340000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACCAAA.....................................................................................................................2632.006000000000000000000000000000000000000600000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACC........................................................................................................................18162.00324203000000000000000000000000020000010000000100000000000000000010
.......................................................................................TCCGGCTCGAAGGACCAA......................................................................................................................18202.00402001000010000100000001306000100060171000000000000000000000000000
.......................................................................................TCCGGCTCGAAGGACCAAAA....................................................................................................................20111.7319011200000000110000000000102000003013000001001000100000000000000
........................................................................................CCGGCTCGAAGGACCA.......................................................................................................................16201.50300000000000000000000000000000000000000000001000000000000000102026
......................................................................................ATCCGGCTCGAAGGACC........................................................................................................................17201.35270000000000000000000000000000000000000000000110001231000002160000
.......................................................................................TCCGGCTCGAAGGACCAAAAA...................................................................................................................21151.2018003000000000300000000000300000002013100001000000000001000000000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACCA.......................................................................................................................2431.003000000000000000000000000000000000000300000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACCAAATGA-TG...............................................................................................................2621.002000000000000000000000000001010000000000000000000000000000000000
.......................................................................................TCCGGCTCGAAGGACCA.......................................................................................................................17200.7515000000000000000000000000000000000000000000101001025021100100000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGAC.........................................................................................................................2230.672000000000000000000000000000000000000200000000000000000000000000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGA..........................................................................................................................2130.672000000000001000000000000000000000000100000000000000000000000000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACCAAAT....................................................................................................................2730.672000000000000000000000000000000000000200000000000000000000000000
......................................................................................ATCCGGCTCGAAGGACCG.......................................................................................................................18200.6012900100011000000000000000000000000000000000000000000000000000000
........................................................................................CCGGCTCGAAGGACC........................................................................................................................15200.5511000000000000000000000000000000000000000010000020201005000000000
.......................................................................................TCCGGCTCGAAGGACCAAATGA-TGT--AG----------------------------------------------------------------------------------------------------------2750.402000000000001000000000000000000010000000000000000000000000000000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAG............................................................................................................................1930.331000000000001000000000000000000000000000000000000000000000000000
TGAA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACC........................................................................................................................2330.331000100000000000000000000000000000000000000000000000000000000000
..AA--------------------------------------------------------------------------------GTATCCGGCTCGAAGGACC........................................................................................................................2130.331100000000000000000000000000000000000000000000000000000000000000
......................................................................................ATCCGGCTCGAAGGACCT.......................................................................................................................18200.306130000000000000000000000000000000000100000000000000000001000000
......................................................................................ATCCGGCTCGAAGGACCAA......................................................................................................................19200.255000000000000000000000000000001012010000000000000000000000000000
...........................................................................................GCTCGAAGGACCAAATGA-TG...............................................................................................................2050.201000000000000010000000000000000000000000000000000000000000000000
......................................................................................ATCCGGCTCGAAGGACCC.......................................................................................................................18200.204000000100000000001100000000000000100000000000000000000000000000
...........................................................................................GCTCGAAGGACCAAATGA-TGT--AG----------------------------------------------------------------------------------------------------------2350.201000000000000000000000000000000000000010000000000000000000000000
......................................................................................ATCCGGCTCGAAGGACCAAA.....................................................................................................................20100.202000000000000000000000000000000000000110000000000000000000000000
.............................................................................................TCGAAGGACCAAATGA-TGT--AG----------------------------------------------------------------------------------------------------------2150.201000000000000000000000001000000000000000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACCG.......................................................................................................................19160.193000000000000000000000000000010000000001000000000000000000000010
.......................................................................................TCCGGCTCGAAGGACCC.......................................................................................................................17200.153000000000000000000000000000000000000000000000000000000000000003
.....................................................................................TATCCGGCTCGAAGGACT........................................................................................................................18200.102010000000000000000000000000000000000000000010000000000000000000
.........................................................................................CGGCTCGAAGGACCA.......................................................................................................................15200.102000000000000000000000000000000000000000000000000000000001010000
.......................................................................................TCCGGCTCGAAGGACCAAAT....................................................................................................................20110.091000000000000000000000000000000000010000000000000000000000000000
.........................................................................................CGGCTCGAAGGACCAAAA....................................................................................................................18110.091000000000000000000000000000000000100000000000000000000000000000
........................................................................................CCGGCTCGAAGGACCAAA.....................................................................................................................18110.091001000000000000000000000000000000000000000000000000000000000000
......................................................................................ATCCGGCTCGAAGGACCAAAAA...................................................................................................................22130.081000000000000000000000000000000000001000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACCC.......................................................................................................................19160.061010000000000000000000000000000000000000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGACA........................................................................................................................18160.061000000000000000100000000000000000000000000000000000000000000000
.....................................................................................TATCCGGCTCGAAGGAC.........................................................................................................................17160.061000000000000000000000000000000000000000000000000000000000010000
.......................................................................................TCCGGCTCGAAGGACCACC.....................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
.......................................................................................TCCGGCTCGAAGGAC.........................................................................................................................15200.051000000000000000000000000000000000000000000000000000000000100000
.......................................................................................TCCGGCTCGAAGGACCAC......................................................................................................................18200.051000000000000000000000100000000000000000000000000000000000000000
droMoj3
ATATATGCAAGTTGCAGTGAGATG-AAATGCAAGCAA-TTACTTATCTGAGTACTCCCAATCGCTGGTA--AATATGGTGGATGATATCCGGCTCGAAGGACCAAAATG-TGC--AG----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................ATCCGGCTCGAAGGACCA.......................................................................................................................18201.90380038000
.....................................................................................TATCCGGCTCGAAGGACCA.......................................................................................................................19201.35271800180
....................................................................................ATATCCGGCTCGAAGGACCA.......................................................................................................................20201.15231600070
.......................................................................................TCCGGCTCGAAGGACCAAAA....................................................................................................................2050.603010020
ATATATGCAAGTTGCAGTGAGATG-......................................................................................................................................................................................................2430.331100000
......................................TTACTTATCTGAGTACTCCCAATCG................................................................................................................................................................2530.331000001
.TATATGCAAGTTGCAGTGAGATG-......................................................................................................................................................................................................2330.331100000
..............................................................................TGGATGATATCCGGCTCGAAGGACC........................................................................................................................2570.141000010
.......................................................................................TCCGGCTCGAAGGACCAC......................................................................................................................18200.102200000
.....................................................................................TATCCGGCTCGAAGGACC........................................................................................................................18200.102100001
..................................................................................TGATATCCGGCTCGAAGGACCA.......................................................................................................................22160.061000010
........................................................................................CCGGCTCGAAGGACCA.......................................................................................................................16200.051000100
....................................................................................ATATCCGGCTCGAAGGACC........................................................................................................................19200.051000001

Generated: 05/15/2015 at 04:18 PM