ID:

dya_1254

 Coordinate:

chr2h:397139-397289 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.6 -15.5 -15.3

Flybase annnotation

exon [dyak_GLEANR_6365:1]; CDS [Dyak\GE22675-cds]; intron [Dyak\GE22675-in]

Repeatable elements

NameClassFamilyStrand
Jockey-1_DYaLINEJockey-
mature
  1. 3L:23477357-23477381 -
  2. 2R:4792653-4792677 -
  3. 3R:14291984-14292008 -
  4. v2_chrUn_1178:1410-1434 -
  5. v2_chrUn_1514:12370-12394 +
  6. v2_chrUn_1754:353-377 -
  7. v2_chrUn_3225:1530-1554 -
  8. v2_chrUn_5522:360-384 -
  9. v2_chrUn_6905:488-512 -
  10. dya_1254  chr2h:397218-397242 -
  11. chr2h:755465-755489 -
  12. v2_chr2L_random_001:62007-62031 -
  13. v2_chr2L_random_019:95540-95564 +
  14. v2_chr2L_random_028:248581-248605 +
  15. v2_chr2h_random_003:63952-63976 +
  16. v2_chr2h_random_003:293925-293949 -
  17. v2_chrX_random_049:63951-63975 -
  18. v2_chrUn_033:9283-9307 +
  19. v2_chrUn_554:14979-15003 +
  20. v2_chrUn_856:2387-2411 -
  21. v2_chrUn_1264:17008-17032 +
  22. v2_chrUn_4137:12611-12635 +
  23. v2_chrUn_4206:38716-38740 +
  24. v2_chrUn_2323:10551-10575 +
  25. v2_chrUn_5392:751-775 +
  26. v2_chrUn_6456:75-99 +
  27. v2_chrUn_6514:660-684 +
  28. v2_chrUn_6748:9129-9153 +
  29. v2_chrUn_6834:4806-4830 +
  30. v2_chr2h_random_004:830985-831009 +
  31. v2_chr2L_random_028:650382-650406 +
  32. v2_chrX_random_046:364398-364422 +
star
  1. 3L:23477288-23477313 -
  2. v2_chrUn_1264:17076-17101 +
  3. v2_chrUn_1514:12438-12463 +
  4. v2_chrUn_4206:38784-38809 +
  5. v2_chrUn_2323:10619-10644 +
  6. v2_chrUn_3225:1461-1486 -
  7. v2_chrUn_5392:819-844 +
  8. v2_chrUn_5709:216118-216143 +
  9. v2_chrUn_6514:728-753 +
  10. v2_chrUn_6748:9197-9222 +
  11. v2_chrUn_6834:4840-4865 +
  12. v2_chr2h_random_005:717587-717612 +
  13. v2_chr2h_random_004:831053-831078 +
  14. dya_1254  chr2h:397149-397174 -
  15. v2_chr2L_random_028:248649-248674 +
  16. v2_chr2L_random_028:650450-650475 +
  17. v2_chr2h_random_003:64020-64045 +
  18. v2_chrX_random_049:63882-63907 -
  19. v2_chrUn_086:2392-2417 -
  20. v2_chrUn_554:15047-15072 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTCATTCATGAAAACAACCATGCAAACCATTGTTCAGAACCAGAACATGGTAATTCAGTTGCTTGTAGCACAACAGTCCAAATAATAAATGACTAACCTACGTATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTTGAAATAACTCAATTCCTAAACGTAAATCACATCGACGCCATGCTGCTGGTTGAAACGCACCTCACAGGGAGATATAACTTCCATATAAGAGGTTATACATTTTAC
*************************************************************************************************..(((((.......(((((((((((...)))))))))))........((((......)))).......))))).....................************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V046
embryo
 V120
male body
...............................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGGAGA................................. 27 0 20 1.05 21 12 9 0 0 0
.......CATGAAAACAACCATGCAAACCATTGT......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...............CAACCATGCAAACCATTGTTCAGAACC................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGG.................................... 24 0 20 0.65 13 11 0 2 0 0
.................................................................................................CCTACGTATATCCATGTGGAATGCC................................................................................................................................. 25 0 20 0.25 5 5 0 0 0 0
.................................................................................................................................................................................TCGACGCCATGCTGCTGGTTGAAACG................................................ 26 0 20 0.15 3 3 0 0 0 0
........................................................................................................................................................................TAAATCACATCGACGCCCTGCTGCTGG........................................................ 27 1 20 0.15 3 0 3 0 0 0
.................................................................................................CCTACGTATATCCATGTGGAAT.................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
............................................................................................................................CGGCATTTCACGGCATAAACTTGAAA..................................................................................................... 26 0 10 0.10 1 0 0 1 0 0
...................................................................................................................................................................................................TTGAAACGCACCTCACAGGGAGATA............................... 25 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................ACGTAAATCACATCGACGCCATGCTG............................................................ 26 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................TGAAACGCACCTCACAGGGAGATATAAC........................... 28 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................AATAACTCAATTCCTAAACGTAAA............................................................................... 24 0 20 0.10 2 2 0 0 0 0
......................................................................ACAACAGTCCAAATAATAAATGACT............................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................................................GAGATATAACTTCCATATAA................. 20 0 12 0.08 1 1 0 0 0 0
..........................................................GTTGCTTGTAGCACAACAGTCCAA......................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................CCTACGTATATCCATGTGGAATGCCAA............................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTGAGACGCACCTCACAGGGAGA................................. 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................TCACATCGACGCCATGCTG............................................................ 19 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................ACGTAAATCACATCGACGCCATGCA............................................................. 25 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAATAACTCAATTCCTAAACGTAAAT.............................................................................. 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................TGCCTAAACGTAAATCACATCGACGC................................................................... 26 1 20 0.05 1 0 0 1 0 0
...........................................................................................GACTAACCTACGTATATCCATGTGG....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................CACGTAAATCACATCGACGCCA................................................................. 22 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTGAAACGCACCTCAAAGGGAGATA............................... 29 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................TAAACGTAAATCACATCGACGCCATGC.............................................................. 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................CACGGCATAAACTTGAAAT.................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGGAGT................................. 27 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAATAACTCAATTCCTAAACGTAAATC............................................................................. 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................TGCTGCTGGTTGAAACGCACCTCACAG...................................... 27 0 20 0.05 1 0 0 0 1 0
................................................................................................CCCTACGTATATCCATGTGGAATGCC................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.................................................................................................CCTACGTATATCCATGTGGAATG................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................AAACGTAAATCACATCGACGCCATG............................................................... 25 0 20 0.05 1 1 0 0 0 0
..................................................................................................CTACGTATATCCATGTGGAATGC.................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................GTTGCTTGTAGCACAACAGTCCAAA........................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................TGCTGGTTGAAACGCACCTCACAG...................................... 24 0 20 0.05 1 1 0 0 0 0
...................................................................................................TACGTATATCCATGTGGAATGCCAACGG............................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
.................................................................................................CCTACGTATATCCATGTGGAAAGC.................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................CTGGTTGAGACGCACCTCAC........................................ 20 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................CGATGCTGCTGGTTGAAG.................................................. 18 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................ACGTAAATCACATCGACGCCATGCTGC........................................................... 27 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................................TGGTTGAAACGCACCTCACAGGGAGATA............................... 28 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................CTAAACGTAAATCACATCGACGCCA................................................................. 25 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................TCAATTCCTAAACGTAAATCACATCGACC.................................................................... 29 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAATAACTCAATTCCTAAACGTAAATCAT........................................................................... 29 1 20 0.05 1 1 0 0 0 0
.................................................................................................................TGGAATGCTAACGGCCTTTC...................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................TAAACGTAAATCACATCGACGCC.................................................................. 23 0 20 0.05 1 0 0 1 0 0
...............................................................................................................................................................................................CTGGTTGACACGCACCTCACAGGGAG.................................. 26 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................TCAATTCCTAAACGTAAATCACATCGAC..................................................................... 28 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................GTTGAAACGCACCTCACAGGGA................................... 22 0 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................................................GGTTGAAACGCACCTCACAGGGAGATA............................... 27 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACAGTAAGTACTTTTGTTGGTACGTTTGGTAACAAGTCTTGGTCTTGTACCATTAAGTCAACGAACATCGTGTTGTCAGGTTTATTATTTACTGATTGGATGCATATAGGTACACCTTACGGTTGCCGTAAAGTGCCGTATTTGAACTTTATTGAGTTAAGGATTTGCATTTAGTGTAGCTGCGGTACGACGACCAACTTTGCGTGGAGTGTCCCTCTATATTGAAGGTATATTCTCCAATATGTAAAATG
************************************************************..(((((.......(((((((((((...)))))))))))........((((......)))).......))))).....................************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V052
head
 V058
head
 V046
embryo
 M026
head
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACTTT.................................................. 26 0 20 11.70 234 204 26 2 2 0 0 0 0
.......................................................AGTCAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 0 20 4.10 82 0 82 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAACTTT.................................................. 25 0 20 3.85 77 49 21 3 4 0 0 0 0
.................................................................................................................................................................................AGCTGCGGTACGACGACCAACTTT.................................................. 24 0 20 2.80 56 53 0 2 1 0 0 0 0
..........................................TCTTGTACCATTAAGTCAACGAACAT....................................................................................................................................................................................... 26 0 20 1.65 33 9 16 8 0 0 0 0 0
....................................................................................................................................GTGCCGTATTTGAACTTTATTGAGT.............................................................................................. 25 0 20 1.60 32 31 0 1 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACTT................................................... 25 0 20 1.55 31 31 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGTACGACGACCAACTTT.................................................. 18 0 20 1.35 27 0 27 0 0 0 0 0 0
........................................................GTCAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 26 0 20 1.30 26 0 26 0 0 0 0 0 0
ACAGTAAGTACTTTTGTTGGTACGT.................................................................................................................................................................................................................................. 25 0 20 1.25 25 24 0 1 0 0 0 0 0
.........................................................TCAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 25 0 20 1.20 24 11 12 0 1 0 0 0 0
.....................ACGTTTGGTAACAAGTCTTGGTCTTGT........................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................CTTGTACCATTAAGTCAACGAACAT....................................................................................................................................................................................... 25 0 20 0.95 19 16 0 3 0 0 0 0 0
.......................................................AGTCAACGACCATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 1 20 0.95 19 0 19 0 0 0 0 0 0
...................................................................................................................................................................................CTGCGGTACGACGACCAACTTTGCGT.............................................. 26 0 20 0.85 17 17 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGAGTGTCCCTCTATATTGAAGGTAT.................... 26 0 8 0.75 6 0 6 0 0 0 0 0 0
.....................................................................................................................................................................................GCGGTACGACGACCAACTTTGCGT.............................................. 24 0 20 0.70 14 0 14 0 0 0 0 0 0
.................................................................................TTATTATTTACTGATTGGATGCATAT................................................................................................................................................ 26 0 20 0.70 14 14 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACT.................................................... 24 0 20 0.65 13 13 0 0 0 0 0 0 0
...................................................................................................................................AGTGCCGTATTTGAACTTTATTGAGT.............................................................................................. 26 0 20 0.55 11 10 0 0 0 0 0 1 0
..............................................................................................................................................................................................CGACCAACTTTGCGTGGAGTGTCCCT................................... 26 0 20 0.45 9 5 0 4 0 0 0 0 0
.....................................................................................................................................TGCCGTATTTGAACTTTATTGAGT.............................................................................................. 24 0 20 0.45 9 9 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCTGCGGTACGACGACCAACTTTGCGT.............................................. 28 0 20 0.45 9 2 7 0 0 0 0 0 0
.........................................................................................................ATAGGTACACCTTACGGTTGCCGTAA........................................................................................................................ 26 0 12 0.42 5 0 5 0 0 0 0 0 0
.......................................................AGTCAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 26 0 20 0.40 8 0 8 0 0 0 0 0 0
..................................................................................................................................................................................GCTGCGGTACGACGACCAACTTT.................................................. 23 0 20 0.40 8 7 0 1 0 0 0 0 0
...........................................................................................CTGATTGGGTGCAGATTG.............................................................................................................................................. 18 3 20 0.35 7 3 0 0 0 4 0 0 0
..............................................GTACCATTAAGTCAACGAACATCGTGT.................................................................................................................................................................................. 27 0 20 0.35 7 7 0 0 0 0 0 0 0
...........................................................................................CTGATTGGATGCATATAGGTACACCT...................................................................................................................................... 26 0 20 0.35 7 7 0 0 0 0 0 0 0
...................................................................................................................................................................................CTGCGGTACGACGACCAACTTT.................................................. 22 0 20 0.30 6 5 0 0 1 0 0 0 0
................................................................................................TGGATGCATATAGGTACACCTTACGGTT............................................................................................................................... 28 0 20 0.30 6 6 0 0 0 0 0 0 0
..........................................................................................ACTGATTGGATGCATATAGGTACACCT...................................................................................................................................... 27 0 20 0.30 6 6 0 0 0 0 0 0 0
...............................ACAAGTCTTGGTCTTGTACCATTAAGT................................................................................................................................................................................................. 27 0 20 0.30 6 2 0 4 0 0 0 0 0
.................................................................................................GGATGCATATAGGTACACCTTACGGT................................................................................................................................ 26 0 20 0.30 6 5 0 0 1 0 0 0 0
...........................................................................................CTGATTGGATGCAGGTTG.............................................................................................................................................. 18 3 20 0.25 5 3 0 0 0 1 1 0 0
................................................................................................TGGATGCATATAGGTACACCTTACGG................................................................................................................................. 26 0 20 0.25 5 1 4 0 0 0 0 0 0
.............................................................................................................................................................................GTGTAGCTGCGGTACGACGACCAACT.................................................... 26 0 20 0.25 5 4 0 0 0 0 0 1 0
.........................................................TCAACGACCATCGTGTTGTCAGGTT......................................................................................................................................................................... 25 1 20 0.25 5 0 5 0 0 0 0 0 0
........................................................GTCAACGAACATGGTGTTGTCAGGTT......................................................................................................................................................................... 26 1 20 0.25 5 0 5 0 0 0 0 0 0
..........................................................CAACGAACATCGTGTTGTCAGGTTTAT...................................................................................................................................................................... 27 0 20 0.20 4 3 0 1 0 0 0 0 0
..........................................................CAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 24 0 20 0.20 4 2 1 1 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGTCCAACTTT.................................................. 26 1 20 0.20 4 4 0 0 0 0 0 0 0
.......................................TGGTCTTGTACCATTAAGTCAACGAAC......................................................................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0 0 0
..................................................................................................................................AAGTGCCGTATTTGAACTTTATTGAGT.............................................................................................. 27 0 20 0.20 4 4 0 0 0 0 0 0 0
..........................................CCTTGTACCATTAAGTCAACGAACAT....................................................................................................................................................................................... 26 1 20 0.20 4 0 0 4 0 0 0 0 0
.......................................................................................................ATATAGGTACACCTTACGGTTGCCGT.......................................................................................................................... 26 0 12 0.17 2 2 0 0 0 0 0 0 0
.......................................TGGTCTTGTACCATTAAGTCAACGA........................................................................................................................................................................................... 25 0 20 0.15 3 2 0 1 0 0 0 0 0
ACAGTAAGTACTTTTGTTGGTACG................................................................................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0
..................................................................................TATTATTTACTGATTGGATGCATAT................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0 0 0 0
.......................................................AGTCAACGCCCATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 2 20 0.15 3 0 3 0 0 0 0 0 0
.................................................................................................................................................ACTTTATTGAGTTAAGGATTTGCAT................................................................................. 25 0 20 0.15 3 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCGGTACGACGACCAACTTT.................................................. 20 0 20 0.15 3 3 0 0 0 0 0 0 0
..........................................................................................ACTGATTGGATGCATATAGGTACACCTT..................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTGGAGTGTCCCTCTATATTGAAGGT...................... 26 0 9 0.11 1 1 0 0 0 0 0 0 0
........................................................GTCAACGACCATCGTGTTGTCAGGTT......................................................................................................................................................................... 26 1 20 0.10 2 0 2 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAACTT................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGTACGACGAGCAACTTT.................................................. 18 1 20 0.10 2 0 2 0 0 0 0 0 0
....................................................................................................................................................TTATTGAGTTAAGGATTTGCATTTAGT............................................................................ 27 0 20 0.10 2 2 0 0 0 0 0 0 0
......................................................AAGTCAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0 0 0
...................................................................................................................................AGTGCCGTATTTGAACTTTATTG................................................................................................. 23 0 20 0.10 2 1 1 0 0 0 0 0 0
.................................................................................................................................AAAGTGCCGTATTTGAACTTTATTGAGT.............................................................................................. 28 0 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACTTTA................................................. 27 1 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAACT.................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................TATTGAGTTAAGGATTTGCATTTAGT............................................................................ 26 0 20 0.10 2 2 0 0 0 0 0 0 0
...........................................................................................................................TGCCGTAAAGTGCCGTATTTGAACT....................................................................................................... 25 0 10 0.10 1 1 0 0 0 0 0 0 0
.........................................................TCAACGAACATGGTGTTGTCAGGTT......................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0 0 0 0
.............................................................................................................................................................................GTGTAGCTGCGGTACGACGACCAAC..................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
....................................................................................................................................GTGCCGTATTTGAACTTTATTGAG............................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0
.......................................................AGTCAACGACCATCGTGTTGTCAGGT.......................................................................................................................................................................... 26 1 20 0.10 2 0 2 0 0 0 0 0 0
.......................................................AGTCAACGAACATTGTGTTGTCAGGTT......................................................................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0 0 0
...................................................................................................................................................TTTATTGAGTTAAGGATTTGCATTT............................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................GCTGCGGTACGACGACCAACTT................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................TCAACGCACATCGTGTTGTCAGGTT......................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................GGTAGGACGACCAACTTT.................................................. 18 1 20 0.10 2 0 2 0 0 0 0 0 0
................................................................ACATCGTGTTGTCAGGTTTATTATTT................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0 0 0
.................................................................................TTATTGTTTACTGATTGGATGCATAT................................................................................................................................................ 26 1 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................TTTATTATTTACTGATTGGATGCATAT................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0 0 0 0 0
.............................................TGTACCATTAAGTCAACGAACATCGTGT.................................................................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................TCAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0
........................................................................................................................................................TGAGTTAAGGATTTGCATTTAGTGTAG........................................................................ 27 0 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................................................................................................CTTTATTGAGTTAAGGATTTGCATTT............................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0
............................................................................CAGGTTTATTATTTACTGATTGGAT...................................................................................................................................................... 25 0 20 0.10 2 1 0 0 1 0 0 0 0
.........................................................................................................ATAGGTACACCTGACGGTTGCCGTAA........................................................................................................................ 26 1 12 0.08 1 0 1 0 0 0 0 0 0
......................................................................................................CATATAGGTACACCTTACGGTTGCCGT.......................................................................................................................... 27 0 12 0.08 1 1 0 0 0 0 0 0 0
.......................................................................................................................CGGTTGCCGTAAAGTGCCGTATTTG........................................................................................................... 25 0 15 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................CCTTACGGTTGCCGTAAAGTGCCGTG............................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................CTTACGGTTGCCGTAAAGTGCCGTAT.............................................................................................................. 26 0 16 0.06 1 1 0 0 0 0 0 0 0
.............................................TGTACCATTAAGTCAACGAACATCGT.................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CGGTACGACGACCAACTTT.................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
ACAGTAAGTACTTTTGATGGTACGT.................................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................TGATTGGATGCATATAGGTACACCTT..................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GACCAACTTTGCGTGGAGTGTCCCTCT................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................AGTCAACGAGCATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0
.........................TTGGTACCAAATATTGGTC............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................CCAACTTTGCGTGGAGTGTCCCTCTAT............................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................GTGTGGCTGCGGTACGACGACCAACTTT.................................................. 28 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGAGTGTCCCTCTATATTG........................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTGCGTGGAGTGTCCCTCTATAT............................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................ATTTAGTGTAGCTGCGGT................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................CTTTATTGAGTTAAGGATTTGCATT................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0
..AGTAAGTACTTTTGTTGGTACGT.................................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................TAAAGTGCCGTATTTGAACTT...................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACGACGACCAACTTTGCGTGGAGTGT....................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................CCTTGTACCATTAAGTCAACGAACGT....................................................................................................................................................................................... 26 2 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................TACTGATTGGATGCATATAGGTACA......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTAGTGTAGCTGCGGTACGACGACCAA...................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................ACCAACTTTGCGTGGAGTGTCCCTCTA................................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................ACAAGTCTTGGTCTTGTACCATTAAG.................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................CAACGAACATCGTGTTGTGAGGTTTAT...................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................TTATTATTTACTGATTGAATGCATAT................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACGGTACGACGACCAACTTTGCGT.............................................. 24 1 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................GTAACTGCGGTACGACGACCAACTT................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................TTGGATGCATATAGGTACACCTTACGG................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TGTAGCTGCGGTACGACGACCAACTT................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTAGCTGCGGTACGACGACCAACTTT.................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0
ACAGTAAGTACTTTTGTTGGTACCT.................................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACTG................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0
ACAGTAAGTACTTTTGTTGGTACGTC................................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................CTTGTACCATTAAGTCAACGAACATCGT.................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................GGTCAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................AACTTTATTGAGTTAAGGATTTGCATTT............................................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................TCTTGTACCATTAAGTCAACGAACA........................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................TCAACGAACATCGTGTTCTCAGGTT......................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................GGATGCATATAGGTACAACTTACGGT................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................GTTTATTATTTACTGATTGGATGCATAT................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................TCTTGTACCATTAAGTCAACAAACAT....................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................TCAACGAACATCGTGTTGTCAGGTTT........................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................CAACGAACCTCGTGTTGTCAGGTTT........................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................TCTTGTACCATTAAGTCAACGAACTT....................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGATCAACTTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................TGGATGCATATAGGTACACCTTACG.................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 1 0
.......................................................AGTGAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................TCTTGTACCCTTAAGTCAACGAACAT....................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................GGATGCATATAGGTACAGCTTACGGT................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTGGAGCGTCCCTCTATATTGA.......................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCCGTATTTGAACTTTATTGAAT.............................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GACCAACTTTGCGTGGAGTGTCCCT................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................GCGGTACGACGACCAACTTTGATT.............................................. 24 2 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................CAACGAACATCGTGTTGTCAGGTTT........................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAACTTTC................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................TCTTGTACCATTCAGTCAACGAACAT....................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................................TGAGTTAAGGATTTGCATTTAGTGT.......................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................GCATTTAGTGTAGCTGCGGTACGACG........................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................TTGTACCATTAAGTCAACGAACATCGT.................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACTTTGCGTGGAGTGTCCCTCTA................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................GCATATAGGTACACCTTACGGTT............................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................GGATTTGCATTTAGTGTAGCTGCGGT................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................ACCATTTAGTCAACGAACATCGTGTTGT............................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCTGCGGTACGACCACCAACTTT.................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAACTTTGCGTGGAGTGTCCCTCTAT............................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................CTGCGGTACGACGACCAACTTTGCTT.............................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................................................................GAACTTTATTGAGTTAAGGATTTGCA.................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TGAGTTAAGGATTTGCATTTAGT............................................................................ 23 0 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................CTGCGGTACGACGACCAACTTTGTGT.............................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................GCTGCGGTACGACGACCAACT.................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................TCGTGTTGTCAGGTTAATTATTTA................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCCGTATTTGAACTTTATTGAG............................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................AGGCAACGAACATCGTGTTGTCAGGTT......................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................................................AAAGTGCCGTATTTGAACTTTATTGAG............................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................GTTGTCAGGTTTATTATTTACTG............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCTGCGGTACGACGACCAACTTTG................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................GTGCCGTATTTGAACTTTA.................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................ACCATTAAGTCAACGAAGATCGTGTT................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TGGCTGCGGTACGACGACCAACTTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAAATTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................................TTATTGAGTTAAGGATTTGCATTTAG............................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................ACTGATTGGATGCATATAGGTACACCTG..................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGTGGTACGACGACCAACTTT.................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................CAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................CTGATTGGATGCATATAGGTACACC....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................CGAACATCGTGTTGTCAGGTTTATTATT.................................................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................GTGCCGTATTTGAACTTTATTGAGTT............................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................TACTGATTGGATGCACATAGGTACACCT...................................................................................................................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0
.................................................CCATTAAGTCAACGAACATCGTGTT................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................ACAAGTCTTGGTCTTGTACCATTAAGTC................................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0
........TGCTATTGTTGGTACGTT................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................TTGTCAGGTTTATTATTTA................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................GTACCATTAAGTCAACGAACATCGT.................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................GTGACGTATTTGAACTGTATTGAGT.............................................................................................. 25 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GTGGCTGCGGTACGACGACCAACTTT.................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................AACGAACATCGTGTTGTCAGGTTT........................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCAACTTTGAC............................................... 29 2 20 0.05 1 1 0 0 0 0 0 0 0
..........................................TCTTGTACCATTAAGTCAGCGAACAT....................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................TTATTATTTACTGATTGGATGCAT.................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTACGACGACCAGCTTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0
...................................................................................................................................AGTGCCGTATTTGAACTTTATTGAG............................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................ACAAGTCTTGGTCTTGTACCATTAATT................................................................................................................................................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................TTAGTATTTACTGATTGGATGCATATA............................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................CTTGTACCATTAAGTCAACG............................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCCGTATTTGAACTTTATTGAGTTA............................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................TGAACTTTATTGAGTTAAGGATTTGCAT................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GTAGCTGCGGTACGACGACCA....................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................TCAGGTTTATTATTTACTGATTGGAT...................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................GTCAACGAACATCGTGTTGTCAGGT.......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................AGTGTAGCTGCGGTACGACGACCAA...................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0
........................................................................................................................................................CGAGTTAAGGATTTGCATTTAGT............................................................................ 23 1 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................TAGCTGCGGTAAGACGACCAACTTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 chr2h:397089-397339 - dya_1254 TGTCATTCATGAAAACAACCATGCAAACCATTGTTCA--------------------------------------------GAACCAGAACATGGTAATTCAGTTGCTTGTAGCACAACAGTCCAAATAATAAATGACTAACCTACGT--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTTGAAATAACTCAATTCCTAAACGTAAATC-ACATCGACGCCATGCTGCTGGTTGAAACGCACCTCACAGGGAGATATAACTTCCATATAAGAGGTTATACATTTTAC
droEre2 scaffold_4845:1645809-1646052 + TGTCATTTATGAAAACGACTATAAGAACCCTTGTTCA--------------------------------------------GAACCAGAATATGGTGATTCAGTTGCTTGCAGC---------CAAATAATAAATGTCTAACCTACGTACATATCCATGTGGAATGCCAACGACATTTCACGGCATAAACTTGAAATAACGCAATTTCTAAACGTAAATC-ACATCGATACTAGGCTGCTGGTTGAAACCCATCTCACAGTGAATTATAATTTCCACATAAGGGTTTATACCTCTTAC
droSec2 scaffold_80:73168-73413 + ---CATTTATGAAATCGACTATGGAAGCCCTTGCTCA--------------------------------------------GAACCACAATATGGTGATTCAGTTGCCTGTAGCACAACAATCCAAATAATAATTGTCTTACCTACGT--AAATCTATTTCGAATGGGAACGGAATTTCAGGCCATTAACTTGAAATAACGCAGTTCCTAAATGTAAAACAACATCGAAGCCAACCTACTGGTTGAAACGCAGCTCGCAGGGAGATA---CCTCCACATAAGGGGTTATACCTTCTAC
droSim2 node_26283:753-1003 + TGTCATTCATGAAAACAACCATGCAAACCCTTGTTCA--------------------------------------------GAACCAGAACATGGTAATTCAGTTGCTTGTAGCACAACAGTCCAAATAATAAATGACTAACCTACGT--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTTGAAATAACTCAATTTCTAAACGTAAATC-ACATCGACGCCATGCTGCTGGTTGAAACGCACCTCACAGGGAGATATAACTTCCATATAAGAGGTTATACCTTTTAC
dm3 chr2RHet:2445578-2445807 + TGTAATATATATAAACGACTATGCACACCTTTGTTCA--------------------------------------------GAACCAGAATATTGTGATTTAGTTGCTTGTAGCACAAAAGTCCAAATAATAAATATCTATCCTACGT--ATATCCATGTGGAATTCCAACGGCATTTGACGCCATAATTTTGATGTAACAAAATTTCTAAATGTAAACC-TCATCGACGCCATGCTGCTGGTTGAAACGCACG-GAAACGGAGATACAACTTCCAAA--------------------
droEug1 scf7180000405573:7099-7349 + TGTCATTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------TAACCAGAACATGGTGCTACAGCTACTTGTAGCTAAGCAGTCCAAATAACAAATGGCAAATCTACGA--ATAACGATGTGGAACGCCAATGGCGTTTCACGGCACAACCATGAAGTAACACAGTTTCTCAATGATAATC-ATATCGACATTATGCTACTGGCAGAGACGCACCTCACAAACAAATACAACTTCCAAGTAAGAGGATACACTCTCTAC
droBia1 scf7180000301504:84167-84417 + TGTCATTCATGAGAACGATCATGCAAACACTAATTCA--------------------------------------------AAACCAGAACATGGTGTTACAGCGACTTGCAGCTAAGCAGTCCAAATAACAGATGGCAAATTTACGA--ATAACAATGTGGAACGGCAATGGCATTCCACGGCACAACCTTGAAGTAACACAGTTCCTGAATGATAATC-ATATCGACATTGTGCTACTGGTAGAGACGCACCTCATAAACAAATACAACTTCCAAATAAGAGGCAACACTTTCTAC
droTak1 scf7180000411816:164-414 - TGTCCTTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------AAGCCAGAACATGATGTTACAGTTGCTTGCAGCTAAACAGTCCAAATATTTGATGGCAAACCTACGA--ATAACCATATGGAACGCCAATAGCGTTTTCCGGCACAAACTTGAAATATCACAGTTCCTGAATGTAAATC-ATATCGACATTATGCTACTGGTAGAGACACACCTCACAAGCAAATACAACTTCCAAATAAGAGGCTACACCTTCTGC
droEle1 scf7180000487023:8153-8403 + TGTCCTTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------AAACCAGAACATGGTGTTACAGTTGCTTGCAGCTAAGCAGTCCAAATAACTGATGGCAAACCTACGA--ATAACCATGTGGAACGCCAATGGCGTTTCCCGGCACAAAATTGAAAAAACACAGTTCCTGAATGTAAATC-ATATCGACATAATGTTACTGGTAGAGACGCACCTCACAAGCAAATACAACTTCTAAATAAGAGGTTACACCTTATAC
droRho1 scf7180000770763:11975-12225 - TGTCCTTCATGAAAACAACCATGCAAACACTGGTTCA--------------------------------------------AAACCAGAACATGGTGTTACAGTTGCTTGCAGCAAAGCAGTCCAAATAATTGATGGCAAATCTACGA--ATAACCATGTGGAACGCCAATGGCGTTTCCCGGCACAAACATGAAATAACACAGTTCCAGAATGAAAATC-ATATCGAAATTATGCTACTGATAGAGACGCACCTCACAAACAAATATAATTTCCAAATAAGAGGCTACGCCTTCTAC
droFic1 scf7180000448975:1553-1803 + TGTCATTTATGAAAGCGACCATGCAAACGCTGGTCCA--------------------------------------------GAACCAGAATATGTTGATGCAGCTGCTGGTATCACAACAGTCCAAATAATCAATGACTAATCTACGA--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTGGAAATAACACAATTCCTAAATGTAAACC-ACATCGACGCCATGCTGCTGGTTGAAACCCACCTCACAAGCAGATATAACTTCCATATACGGGGTTATACCTTCTAC
droKik1 scf7180000301759:3551-3801 + TGTCATTTATGAAAACGACCATGCAAACGCTTGTCCA--------------------------------------------GAATCAGAATATGGTGATACAGTTGCTTGTAGCACAACAGTCGAAATAATCAATGTCTAATCTACGT--ATATCCACGTGGAATGCCAACGGCTTCTCACGGCATAAACTTGAACTAACACAATTCCTAAATGAAAACC-ACATCGACGCCATGCTACTGGTTGAAACGCACATCACAAGCAGATACAACTTCCATATAAGAGGTTATACCTTCCAC
droAna3 scaffold_13079:622116-622366 + TGTCATTCATGAAAACGACCATGCAAATACTTGTTCA--------------------------------------------AAACCAAAACATGGTAATACAGCTGCTCGTAGCACAACAGTCTAAATAATCTATGAGGACTCTACGA--ATATCAATGTGGAACGCCAATGGTGTATCACGGCATAAACTAGAATTGTCACAATTCTTGATCGAAAAAC-ATATTGACGTTATGCTACTGGTGGAAACGCATCTTACAAGCAAATACAACTTTCAAATAAGAGGCTATACAATCTAC
droBip1 scf7180000393472:9258-9508 + TGTCATTCATGAAAACGACCATGCAAACGCTTGTTCA--------------------------------------------AAACCAGAACATGGTTATACAGCTGCTCGTAGCACAACAGTCTAAATAATCTATGCAGGCGCTACGA--ATATCAATGTGGAACGCCAATGGTGTCTCACGGCATAGACTAGAATTATCTCAATTCTTAACCGAAAACC-ATATTGACGTTATGCTACTGGTGGAAACGCATCTTACAAGCAAATACAACTTTCATATAAGAGGCTACACAATCTAC
dp5 XR_group8:6408783-6409027 + TGTCATTCAAGAGAAAAACTATGCAAAATCTCATGAA--------------------------------------------A------AATGCAGTGATTTAGATGCTTGCATCTCAACAGTCCAAATAATCAATGGCTTCCCTAAGA--ATATCCCGGTGGAATGACAATGGCGTTTCTCAGCGTAAACTTGAACTAACCCAATTCCTGTGCGAAAAAT-ACATCGACGGAATGCTTCTCTCATAGACGCACCATACAAGCAAATACAACTTTAAAATAAGTGGTTATTTGTTTTGC
droPer2 scaffold_36:805021-805264 + TGTCATCCAAGAGAAAAACTATGCAAAATCTCATGCA--------------------------------------------A------AATGCAGTGATTTAGATGCTTGCATCTCAGCAGTCCAAATAATCAATGGCTTCCCTAAGA--ATAGCCCGGTGGAATGACAATGGCTTTTCTCAGCGTAAACTTGACCTAACCCAATTCCTGTGCGAAAAAT-ACATCGACGGAATGCTTCTCTCATAGACG-ACCATACAAGCAAATACAACTTTAAAATAAGTGGTTATTTGTTTTGC
droWil2 scf2_1100000004912:54996-55236 + TGACGTTCATGCAAAACTGTATGCACGAACTAATGCG--------------------------------------------GAATCAAAACCTGCTTATCCAGAAGCTTATCGA----------GAATAAATAATGGCTTCCCTACGT--CTATGTCTTTGGAATGCTAACGGCATCTCCAAGCACAAAAATGAACTGCAACTATTTATAGACTCAAGTG-AAATCGACGTTTTGCTGATTGCGGAAACACACTTAACATCAAAAAATAATTTTCAAATACCAAAATATACCTTCTAC
droVir3 scaffold_12799:229289-229530 + AGTTGCTTCCGGAAACAA---TACAAACAATTAACTTGAGAGAATAGAACACCTACTATAAAAATAATTTAAGCCCAATAACAATTTAGATAATATGATCATGTTACTAGTTAACAAGCTATGCAAGT----------AACTCTAAAT--ATAGGAATATGGAATGCCAATGGGCTTTCCAACCATGTAAATGAAATATCTTTATTTTTAAAAACTAATG-AGATCCACATCATGTTAATATCTGAAACTCATTTTAC----------------------------------------
droMoj3 scaffold_6415:43586-43768 + CAGTCTG----------------------------------------------------------------------------------------------------CTGTAGCCC-ATAGTACAAA-----------TAACTTAAAC--ATCTCTATTTGGAATGCCGCTGGCATCTCTAGTAAACTTACTGAACTCAAACAGTTTCTCATTAAACACA-ATATTGATATTACGCTGGTATCTGAGACGCATTTAACTGACAGAGACAACTTTTGTATTGACGGATATATAGTTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TGTCATTCATGAAAACAACCATGCAAACCATTGTTCA--------------------------------------------GAACCAGAACATGGTAATTCAGTTGCTTGTAGCACAACAGTCCAAATAATAAATGACTAACCTACGT--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTTGAAATAACTCAATTCCTAAACGTAAATC-ACATCGACGCCATGCTGCTGGTTGAAACGCACCTCACAGGGAGATATAACTTCCATATAAGAGGTTATACATTTTACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGGAGA.................................27201.0521012000000009
.......CATGAAAACAACCATGCAAACCATTGT........................................................................................................................................................................................................................................................................2711.00101000000000
...............CAACCATGCAAACCATTGTTCA--------------------------------------------GAACC....................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGG....................................24200.6513011200000000
.............................................................................................................................................CCTACGT--ATATCCATGTGGAATGCC..................................................................................................................................25200.25505000000000
................................................................................................................................................................................................................................TCGACGCCATGCTGCTGGTTGAAACG................................................26200.15303000000000
.............................................................................................................................................CCTACGT--ATATCCATGTGGAAT.....................................................................................................................................22200.10202000000000
..........................................................................................................................................................................CGGCATTTCACGGCATAAACTTGAAA......................................................................................................26100.10100100000000
..................................................................................................................................................................................................................................................TTGAAACGCACCTCACAGGGAGATA...............................25200.10202000000000
...................................................................................................................................................................................................................ACGTAAATC-ACATCGACGCCATGCTG............................................................26200.10202000000000
...................................................................................................................................................................................................................................................TGAAACGCACCTCACAGGGAGATATAAC...........................28200.10202000000000
..................................................................................................................................................................................................AATAACTCAATTCCTAAACGTAAA................................................................................24200.10202000000000
..................................................................................................................ACAACAGTCCAAATAATAAATGACT...............................................................................................................................................................25200.10202000000000
.....................................................................................................................................................................................................................................................................GAGATATAACTTCCATATAA.................20120.08101000000000
......................................................................................................GTTGCTTGTAGCACAACAGTCCAA............................................................................................................................................................................24200.05101000000000
.............................................................................................................................................CCTACGT--ATATCCATGTGGAATGCCAA................................................................................................................................27200.05101000000000
..........................................................................................................................................................................................................................TC-ACATCGACGCCATGCTG............................................................19200.05101000000000
...................................................................................................................................................................................................................ACGTAAATC-ACATCGACGCCATGCA.............................................................25200.05101000000000
.................................................................................................................................................................................................AAATAACTCAATTCCTAAACGTAAAT...............................................................................26200.05101000000000
.......................................................................................................................................GACTAACCTACGT--ATATCCATGTGG........................................................................................................................................25200.05101000000000
................................................................................................................................................................................................................TAAACGTAAATC-ACATCGACGCCATGC..............................................................27200.05101000000000
..................................................................................................................................................................................CACGGCATAAACTTGAAAT.....................................................................................................19200.05101000000000
..............................................................................................................................................................................................................................................CTGGTTGAAACGCACCTCACAGGGAGT.................................27200.05101000000000
.................................................................................................................................................................................................AAATAACTCAATTCCTAAACGTAAATC-.............................................................................27200.05101000000000
.........................................................................................................................................................................................................................................TGCTGCTGGTTGAAACGCACCTCACAG......................................27200.05100010000000
.............................................................................................................................................CCTACGT--ATATCCATGTGGAATG....................................................................................................................................23200.05101000000000
.................................................................................................................................................................................................................AAACGTAAATC-ACATCGACGCCATG...............................................................25200.05101000000000
..............................................................................................................................................CTACGT--ATATCCATGTGGAATGC...................................................................................................................................23200.05101000000000
......................................................................................................GTTGCTTGTAGCACAACAGTCCAAA...........................................................................................................................................................................25200.05101000000000
............................................................................................................................................................................................................................................TGCTGGTTGAAACGCACCTCACAG......................................24200.05101000000000
...............................................................................................................................................TACGT--ATATCCATGTGGAATGCCAACGG.............................................................................................................................28200.05101000000000
...................................................................................................................................................................................................................ACGTAAATC-ACATCGACGCCATGCTGC...........................................................27200.05100100000000
...............................................................................................................................................................................................................................................TGGTTGAAACGCACCTCACAGGGAGATA...............................28200.05101000000000
...............................................................................................................................................................................................................CTAAACGTAAATC-ACATCGACGCCA.................................................................25200.05101000000000
........................................................................................................................................................................................................TCAATTCCTAAACGTAAATC-ACATCGACC....................................................................29200.05101000000000
.................................................................................................................................................................................................AAATAACTCAATTCCTAAACGTAAATC-AT...........................................................................29200.05101000000000
................................................................................................................................................................................................................TAAACGTAAATC-ACATCGACGCC..................................................................23200.05100100000000
........................................................................................................................................................................................................TCAATTCCTAAACGTAAATC-ACATCGAC.....................................................................28200.05101000000000
.................................................................................................................................................................................................................................................GTTGAAACGCACCTCACAGGGA...................................22200.05100000010000
................................................................................................................................................................................................................................................GGTTGAAACGCACCTCACAGGGAGATA...............................27200.05101000000000
droEre2
TGTCATTTATGAAAACGACTATAAGAACCCTTGTTCA--------------------------------------------GAACCAGAATATGGTGATTCAGTTGCTTGCAGC---------CAAATAATAAATGTCTAACCTACGTACATATCCATGTGGAATGCCAACGACATTTCACGGCATAAACTTGAAATAACGCAATTTCTAAACGTAAATC-ACATCGATACTAGGCTGCTGGTTGAAACCCATCTCACAGTGAATTATAATTTCCACATAAGGGTTTATACCTCTTACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
---CATTTATGAAATCGACTATGGAAGCCCTTGCTCA--------------------------------------------GAACCACAATATGGTGATTCAGTTGCCTGTAGCACAACAATCCAAATAATAATTGTCTTACCTACGT--AAATCTATTTCGAATGGGAACGGAATTTCAGGCCATTAACTTGAAATAACGCAGTTCCTAAATGTAAAACAACATCGAAGCCAACCTACTGGTTGAAACGCAGCTCGCAGGGAGATA---CCTCCACATAAGGGGTTATACCTTCTACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................ACAATATGGTGATTCAGTTGCCTG............................................................................................................................................................................................2420.5011000
droSim2
TGTCATTCATGAAAACAACCATGCAAACCCTTGTTCA--------------------------------------------GAACCAGAACATGGTAATTCAGTTGCTTGTAGCACAACAGTCCAAATAATAAATGACTAACCTACGT--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTTGAAATAACTCAATTTCTAAACGTAAATC-ACATCGACGCCATGCTGCTGGTTGAAACGCACCTCACAGGGAGATATAACTTCCATATAAGAGGTTATACCTTTTACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................TGCAAACCCTTGTTCA--------------------------------------------GAACCAGAA................................................................................................................................................................................................................2523.00600000001410000000
....................ATGCAAACCCTTGTTCA--------------------------------------------GAACCAGA.................................................................................................................................................................................................................2520.50100000010000000000
dm3
TGTAATATATATAAACGACTATGCACACCTTTGTTCA--------------------------------------------GAACCAGAATATTGTGATTTAGTTGCTTGTAGCACAAAAGTCCAAATAATAAATATCTATCCTACGT--ATATCCATGTGGAATTCCAACGGCATTTGACGCCATAATTTTGATGTAACAAAATTTCTAAATGTAAACC-TCATCGACGCCATGCTGCTGGTTGAAACGCACG-GAAACGGAGATACAACTTCCAAA--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................AACGCACG-GAAACGGAGATACAACT..........................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGTGATTTAGTTGCTTGTAGCACAAAAG.................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TATTGTGATTTAGTTGCTTGTAGCACA.....................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................T--ATATCCATGTGGAATTCCAACGGCA...........................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ACCAGAATATTGTGATTTAGT..................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CATCGACGCCATGCTGCTGGTT......................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TGTGGAATTCCAACGGCATTTGACGC...................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGTGATTTAGTTGCTTGTAGCACA.....................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.........TATAAACGACTATGCACACCT............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCCATGTGGAATTCCAACGGC............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAAATATCTATCCTACGT--ATATCCA.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AATGTAAACC-TCATCGACGCC..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T--ATATCCATGTGGAATTCCAACGGCATT.........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GCTGGTTGAAACGCACG-GAAACGGAG..................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGTAATATATATAAACGACTATGCACACC.............................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TATATATAAACGACTATGCACACCTT...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGGAATTCCAACGGCATTTGA......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AATTCCAACGGCATTTGACGC...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................TGCTGGTTGAAACGCACG-...........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TATATATAAACGACTATGCACACCTTTG.........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TGTAAACC-TCATCGACGCCATGCTGC...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGCTGGTTGAAACGCACG-GAAACGGA...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CTATCCTACGT--ATATCCATGT..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................TATGCACACCTTTGTTCA--------------------------------------------GAACCAGAT................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTTCTAAATGTAAACC-TCATCGACGCC..................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CATGCTGCTGGTTGAAACGCACG-GAA........................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAGTTGCTTGTAGCACAAAAGT................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T--ATATCCATGTGGAATTCCAACGGCT...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................ATGTAAACC-TCATCGACGCCA.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATCCATGTGGAATTCCAACGGCATT.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AATATTGTGATTTAGTTGCTT.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TGTGGAATTCCAACGGCATTTGACGCCA.................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TAAATGTAAACC-TCATCGACGC...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATTTGACGCCATAATTTTGA........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AACGACTATGCACACCTTTGTT.......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TAAACGACTATGCACACCTTTGTTCA--------------------------------------------GA.......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATCGACGCCATGCTGCTGGTTG.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTCTAAATGTAAACC-TCATCGACGCCA.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GT--ATATCCATGTGGAATTCCAACGGCA...........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATAAACGACTATGCACACCTTTG.........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TCTATCCTACGT--ATATCCATGTGGAAT.....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TGGTTGAAACGCACG-GAAACGGA...................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TCTAAATGTAAACC-TCATCGACG....................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TAAATGTAAACC-TCATCGACGCCATG...............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................ATCCTACGT--ATATCCATGTGG........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAGAATATTGTGATTTAGTTGC...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGCTTGTAGCACAAAAGTCC..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATAATTTTGATGTAACAAAAT.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGTGATTTAGTTGCTTGTAGCA.......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTACGT--ATATCCATGTGGAA......................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEug1
TGTCATTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------TAACCAGAACATGGTGCTACAGCTACTTGTAGCTAAGCAGTCCAAATAACAAATGGCAAATCTACGA--ATAACGATGTGGAACGCCAATGGCGTTTCACGGCACAACCATGAAGTAACACAGTTTCTCAATGATAATC-ATATCGACATTATGCTACTGGCAGAGACGCACCTCACAAACAAATACAACTTCCAAGTAAGAGGATACACTCTCTACSizeHit CountTotal NormTotal
No Reads
droBia1
TGTCATTCATGAGAACGATCATGCAAACACTAATTCA--------------------------------------------AAACCAGAACATGGTGTTACAGCGACTTGCAGCTAAGCAGTCCAAATAACAGATGGCAAATTTACGA--ATAACAATGTGGAACGGCAATGGCATTCCACGGCACAACCTTGAAGTAACACAGTTCCTGAATGATAATC-ATATCGACATTGTGCTACTGGTAGAGACGCACCTCATAAACAAATACAACTTCCAAATAAGAGGCAACACTTTCTACSizeHit CountTotal NormTotal
No Reads
droTak1
TGTCCTTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------AAGCCAGAACATGATGTTACAGTTGCTTGCAGCTAAACAGTCCAAATATTTGATGGCAAACCTACGA--ATAACCATATGGAACGCCAATAGCGTTTTCCGGCACAAACTTGAAATATCACAGTTCCTGAATGTAAATC-ATATCGACATTATGCTACTGGTAGAGACACACCTCACAAGCAAATACAACTTCCAAATAAGAGGCTACACCTTCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
TGTCCTTCATGAAAACGACCATGCAAACACTGGTTCA--------------------------------------------AAACCAGAACATGGTGTTACAGTTGCTTGCAGCTAAGCAGTCCAAATAACTGATGGCAAACCTACGA--ATAACCATGTGGAACGCCAATGGCGTTTCCCGGCACAAAATTGAAAAAACACAGTTCCTGAATGTAAATC-ATATCGACATAATGTTACTGGTAGAGACGCACCTCACAAGCAAATACAACTTCTAAATAAGAGGTTACACCTTATACSizeHit CountTotal NormTotal
No Reads
droRho1
TGTCCTTCATGAAAACAACCATGCAAACACTGGTTCA--------------------------------------------AAACCAGAACATGGTGTTACAGTTGCTTGCAGCAAAGCAGTCCAAATAATTGATGGCAAATCTACGA--ATAACCATGTGGAACGCCAATGGCGTTTCCCGGCACAAACATGAAATAACACAGTTCCAGAATGAAAATC-ATATCGAAATTATGCTACTGATAGAGACGCACCTCACAAACAAATATAATTTCCAAATAAGAGGCTACGCCTTCTACSizeHit CountTotal NormTotal
No Reads
droFic1
TGTCATTTATGAAAGCGACCATGCAAACGCTGGTCCA--------------------------------------------GAACCAGAATATGTTGATGCAGCTGCTGGTATCACAACAGTCCAAATAATCAATGACTAATCTACGA--ATATCCATGTGGAATGCCAACGGCATTTCACGGCATAAACTGGAAATAACACAATTCCTAAATGTAAACC-ACATCGACGCCATGCTGCTGGTTGAAACCCACCTCACAAGCAGATATAACTTCCATATACGGGGTTATACCTTCTACSizeHit CountTotal NormTotal
No Reads
droKik1
TGTCATTTATGAAAACGACCATGCAAACGCTTGTCCA--------------------------------------------GAATCAGAATATGGTGATACAGTTGCTTGTAGCACAACAGTCGAAATAATCAATGTCTAATCTACGT--ATATCCACGTGGAATGCCAACGGCTTCTCACGGCATAAACTTGAACTAACACAATTCCTAAATGAAAACC-ACATCGACGCCATGCTACTGGTTGAAACGCACATCACAAGCAGATACAACTTCCATATAAGAGGTTATACCTTCCACSizeHit CountTotal NormTotal
No Reads
droAna3
TGTCATTCATGAAAACGACCATGCAAATACTTGTTCA--------------------------------------------AAACCAAAACATGGTAATACAGCTGCTCGTAGCACAACAGTCTAAATAATCTATGAGGACTCTACGA--ATATCAATGTGGAACGCCAATGGTGTATCACGGCATAAACTAGAATTGTCACAATTCTTGATCGAAAAAC-ATATTGACGTTATGCTACTGGTGGAAACGCATCTTACAAGCAAATACAACTTTCAAATAAGAGGCTATACAATCTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................CAACAGTCTAAATAATCTATGAGGAC.............................................................................................................................................................2611.001010000
................................................................................................................................................ACGA--ATATCAATGTGGAACGCCAAT...............................................................................................................................25200.153210000
........................................................................................................................................................................................................................................................................ATACAACTTTCAAATAAGAGG.............21140.142000002
......................................................................................................................................................................................GCATAAACTAGAATTGTCACAATT............................................................................................2490.111100000
......................................................................................................................................................................................GCATAAACTAGAATTGTCACAATTC...........................................................................................2590.111100000
.......................................................................................................................................................................................................................................TATGCTACTGGTGGAAACGCA..............................................21200.102000020
...............................................................................................................................................TACGA--ATATCAATGTGGAACGCCAAT...............................................................................................................................26200.102110000
.............................................................................................................................................TCTACGA--ATATCAATGTGGAACGCC..................................................................................................................................25200.102110000
...............................................................................................................................................................................................................................ATTGACGTTATGCTACTGGTGGAAAC.................................................26200.102200000
.........................................................................................................................................................................................TAAACTAGAATTGTCACAATTC...........................................................................................22120.081010000
................................................................................................................................................ACGA--ATATCAATGTGGAACGCC..................................................................................................................................22200.051010000
...............................................................................................................................................................................................................................ATTGACGTTATGCTACTGGTG......................................................21200.051001000
..........................................................................................................................................................................................................................................................CATCTTACAAGCAAATACAACTTTCA......................26200.051100000
...............................................................................................................................................................................................................................ATTGACGTTATGCTACTGGTGGA....................................................23200.051000001
..................................................................................................TACAGCTGCTCGTAGCACAACAGT................................................................................................................................................................................24200.051010000
...............................................................................................................................................TACGA--ATATCAATGTGGAACGCCA.................................................................................................................................24200.051000010
...............................................................................................................................................................................................................................ATTGACGTTATGCTACTGGTGGAAA..................................................25200.051100000
..................................................................................................................................................GA--ATATCAATGTGGAACGCCAATGG.............................................................................................................................25200.051100000
..............................................................................................................................................CTACGA--ATATCAATGTGGAACGCCAA................................................................................................................................26200.051100000
.......................................................................................................................................................................................................................................TATGCTACTGGTGGAAACG................................................19200.051100000
..........................................................................................CATGGTAATACAGCTGCTCGTAGCACA.....................................................................................................................................................................................27200.051100000
...................................................................................................................................................A--ATATCAATGTGGAACGCCAAT...............................................................................................................................22200.051100000
............................................................................................................................................................................................................................................TACTGGTGGAAACGCATCTTACAAGC....................................26200.051010000
droBip1
TGTCATTCATGAAAACGACCATGCAAACGCTTGTTCA--------------------------------------------AAACCAGAACATGGTTATACAGCTGCTCGTAGCACAACAGTCTAAATAATCTATGCAGGCGCTACGA--ATATCAATGTGGAACGCCAATGGTGTCTCACGGCATAGACTAGAATTATCTCAATTCTTAACCGAAAACC-ATATTGACGTTATGCTACTGGTGGAAACGCATCTTACAAGCAAATACAACTTTCATATAAGAGGCTACACAATCTACSizeHit CountTotal NormTotal
No Reads
dp5
TGTCATTCAAGAGAAAAACTATGCAAAATCTCATGAA--------------------------------------------A------AATGCAGTGATTTAGATGCTTGCATCTCAACAGTCCAAATAATCAATGGCTTCCCTAAGA--ATATCCCGGTGGAATGACAATGGCGTTTCTCAGCGTAAACTTGAACTAACCCAATTCCTGTGCGAAAAAT-ACATCGACGGAATGCTTCTCTCATAGACGCACCATACAAGCAAATACAACTTTAAAATAAGTGGTTATTTGTTTTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGTCATCCAAGAGAAAAACTATGCAAAATCTCATGCA--------------------------------------------A------AATGCAGTGATTTAGATGCTTGCATCTCAGCAGTCCAAATAATCAATGGCTTCCCTAAGA--ATAGCCCGGTGGAATGACAATGGCTTTTCTCAGCGTAAACTTGACCTAACCCAATTCCTGTGCGAAAAAT-ACATCGACGGAATGCTTCTCTCATAGACG-ACCATACAAGCAAATACAACTTTAAAATAAGTGGTTATTTGTTTTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGACGTTCATGCAAAACTGTATGCACGAACTAATGCG--------------------------------------------GAATCAAAACCTGCTTATCCAGAAGCTTATCGA----------GAATAAATAATGGCTTCCCTACGT--CTATGTCTTTGGAATGCTAACGGCATCTCCAAGCACAAAAATGAACTGCAACTATTTATAGACTCAAGTG-AAATCGACGTTTTGCTGATTGCGGAAACACACTTAACATCAAAAAATAATTTTCAAATACCAAAATATACCTTCTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................TATGTCTTTGGAATGCTAACGGCATC.........................................................................................................................26200.45909000
..........................................................................................................CTTATCGA----------GAATAAATAATGGCTTCCC...........................................................................................................................................................27200.15303000
.........................................................................................................................................................TGTCTTTGGAATGCTAACGGCATCT........................................................................................................................25200.15303000
....................................................................................................CAGAAGCTTATCGA----------GAATAAATAATGG.................................................................................................................................................................27200.10202000
...................................................................................................................................................................................................................ACTCAAGTG-AAATCGACGTTTTG...............................................................23200.10200020
.......................................................................................................................................................TATGTCTTTGGAATGCTAACGGCA...........................................................................................................................24200.10202000
...................................................................................................................................................................................................................ACTCAAGTG-AAATCGACGTTTT................................................................22200.10202000
............................................................................................................................................................CTTTGGAATGCTAACGGCATC.........................................................................................................................21200.10200200
...............................................................................................................................TAAATAATGGCTTCCCTACGT--CTA.................................................................................................................................................24200.10200020
................................................................................................................................................................................................................................................................................TTCAAATACCAAAATATACCTTCTAC26200.05101000
......................................................................................................................................................CTATGTCTTTGGAATGCT..................................................................................................................................18200.05110000
.................................................................................................................................................................................TCCAAGCACAAAAATGAACTGCAACTA..............................................................................................27200.05101000
............................................................................................................TATCGA----------GAATAAATAATGGCT...............................................................................................................................................................21200.05100100
...........................................................................................................................................................................GGCATCTCCAAGCACAAAAATGAACTG....................................................................................................27200.05101000
...................................................................................................................................................................................CAAGCACAAAAATGAACTGCAAC................................................................................................23200.05101000
.......................................................................................................................................................................................................................AAGTG-AAATCGACGTTTTGCTGATT.........................................................25200.05100010
...............................................................................................................................TAAATAATGGCTTCCCTACGT--C...................................................................................................................................................22200.05101000
.............................................................................................GCTTATCCAGAAGCTTATCGA----------GAA...........................................................................................................................................................................24200.05101000
....................................G--------------------------------------------GAATCAAAACCTGCTTATCCAGAAG................................................................................................................................................................................................26200.05101000
................................................................................................................................................................................................................TAGACTCAAGTG-AAATCGACGTTT.................................................................24200.05100010
...........................................................................................................................................TCCCTACGT--CTATGTCTTTGGAATG....................................................................................................................................25200.05100100
.........................................................................................................................................................TGTCTTTGGAATGCTAACGGCATCTC.......................................................................................................................26200.05101000
...................................................................................................................................................................................................................................................................................AAATACCAAAATATACCTTCT..21200.05101000
..............................................................................................................TCGA----------GAATAAATAATGGCTTCCC...........................................................................................................................................................23200.05101000
.....................................................................................................................................................................................AGCACAAAAATGAACTGCAAC................................................................................................21200.05101000
...........................................................................................CTGCTTATCCAGAAGCTTATCGA----------GAA...........................................................................................................................................................................26200.05101000
...............................................................................................................CGA----------GAATAAATAATGGCTTCCCTA.........................................................................................................................................................24200.05101000
...............................................................................................................................................TACGT--CTATGTCTTTGGAATGC...................................................................................................................................22200.05101000
.......................................................................................................................................GGCTTCCCTACGT--CTATGTCTTTGG........................................................................................................................................25200.05101000
.................................................................................................ATCCAGAAGCTTATCGA----------GAAT..........................................................................................................................................................................21200.05101000
..............................................................................................................TCGA----------GAATAAATAATGGCTTCCCTAC........................................................................................................................................................26200.05101000
......................................................................................................................................................CTATGTCTTTGGAATGCTAA................................................................................................................................20200.05101000
droVir3
AGTTGCTTCCGGAAACAA---TACAAACAATTAACTTGAGAGAATAGAACACCTACTATAAAAATAATTTAAGCCCAATAACAATTTAGATAATATGATCATGTTACTAGTTAACAAGCTATGCAAGT----------AACTCTAAAT--ATAGGAATATGGAATGCCAATGGGCTTTCCAACCATGTAAATGAAATATCTTTATTTTTAAAAACTAATG-AGATCCACATCATGTTAATATCTGAAACTCATTTTAC----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................CTCTAAAT--ATAGGAATATGGA.......................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AATATGGAATGCCAATGGGCT..........................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
CAGTCTG----------------------------------------------------------------------------------------------------CTGTAGCCC-ATAGTACAAA-----------TAACTTAAAC--ATCTCTATTTGGAATGCCGCTGGCATCTCTAGTAAACTTACTGAACTCAAACAGTTTCTCATTAAACACA-ATATTGATATTACGCTGGTATCTGAGACGCATTTAACTGACAGAGACAACTTTTGTATTGACGGATATATAGTTTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTTGTATTGACG..............2715.005500000
............................................................................................................................AAA-----------TAACTTAAAC--ATCTCTATTTGGA.......................................................................................................................................2615.005400010
............................................................................................................................AAA-----------TAACTTAAAC--ATCTCTATTTGG........................................................................................................................................2514.004400000
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTTGTATTG.................2414.004400000
.........................................................................................................................................................................................ACTTACTGAACTCAAACAGTTTCTCA.......................................................................................2613.003300000
...........................................................................................................................................................................................................................A-ATATTGATATTACGCTGGTATCTGA....................................................2612.002200000
.....................................................................................................................................................................................................................................ATTACGCTGGTATCTGAGACGCATT............................................2511.001100000
................................................................................................................................................................................................................TCATTAAACACA-ATATTGATATTACGC..............................................................2711.001100000
.........................................................................................................................................................................................ACTTACTGAACTCAAACAGTTTCTC........................................................................................2511.001100000
....................................................................................................................................................................................................................TAAACACA-ATATTGATATTACGCTGG...........................................................2611.001100000
............................................................................................................................AAA-----------TAACTTAAAC--ATCTCTATTTGGAA......................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................AGACAACTTTTGTATTGACGGATA..........2411.001100000
......................................................................................................................................................................................................................................TTACGCTGGTATCTGAGA..................................................1811.001100000
...TCTG----------------------------------------------------------------------------------------------------CTGTAGCCC-ATAGTACAAA-----------TAACT...........................................................................................................................................................2811.001000010
............................................................................................................................AAA-----------TAACTTAAAC--ATCTCTATTTGGAAA.....................................................................................................................................2811.001100000
..............................................................................................................................A-----------TAACTTAAAC--ATCTCTATTTGG........................................................................................................................................2311.001100000
............................................................................................................................AAA-----------TAACTTAAAC--ATCTCTATTTG.........................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTTGTATT..................2311.001100000
................................................................................................................................................................................................................................TTGATATTACGCTGGTATCTGAGACGCAT.............................................2911.001100000
..........................................................................................................................................................................................................................CA-ATATTGATATTACGCTGGT..........................................................2111.001100000
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTT.......................1811.001100000
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTTGTATTGAA...............2611.001100000
...............................................................................................................................................................................................................................ATTGATATTACGCTGGTATCTGAG...................................................2411.001100000
......................................................................................................................................................................................................................................................GACGCATTTAACTGACAGAGACA.............................2311.001100000
.............................................................................................................................AA-----------TAACTTAAAC--ATCTCTATTTGG........................................................................................................................................2411.001100000
..................................................................................................................................................................................CTAGTAAACTTACTGAAC......................................................................................................1811.001000010
....................................................................................................................................................................TGCCGCTGGCATCTCTAGTAAACTTA............................................................................................................2611.001100000
...........................................................................................................................................................................................TTACTGAACTCAAACAGTTTCTCA.......................................................................................2411.001100000
...............................................................................................................................................................................................................................ATTGATATTACGCTGGTATCTGAGACG................................................2711.001000001
.................................................................................................................................................................................................................................................................CTGACAGAGACAACTTTTGTATTGA................2511.001100000
...................................................................................................................C-ATAGTACAAA-----------TAACTTAAAC--ATCT................................................................................................................................................2511.001100000

Generated: 05/18/2015 at 12:30 AM