dya_1246

CDS [Dyak\anon-EST:fe2D9-cds]; exon [dyak_GLEANR_14688:4]; intron [Dyak\anon-EST:fe2D9-in]

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATAATTAGCGAGAATCAACCAATTATATTACCGCCGGATGTTGCTAGAGGTAAGATTAATTCTTGAACAAATAAAGTTTTCCGTAAATACTGGCTATTTTTTATACCCGCTCCTCGTACTGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATAATAAACTTTTTTGGTGATCGATTTATTAAAAAAAAATATATTTTTCTTTTTA *******************************************************************************************************************************************..........(((((....((.....((((....))))..)))))))......*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	GSM1528802 follicle cells	V046 embryo	M056 embryo	V058 head
.............................................................................................................................................CGTTGAAAAGTATGTAACAGGCAGA.....................................................................................	25	0	20	0.40	8	8	0	0	0	0
.........................................................................................................................................GATTCGTTGAAAAGTATGTAACAGGCA.......................................................................................	27	0	20	0.25	5	4	0	0	1	0
.........................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT...........................................................................	23	0	20	0.25	5	0	5	0	0	0
...........................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGACCAT..................................................................	30	0	20	0.15	3	0	3	0	0	0
.............................................................................................................................................................................GTTTCCGACCATATAAAGTAT.........................................................	21	0	20	0.10	2	2	0	0	0	0
................................................................................................................................................................................TCCGACCATATAAAGTATATATAATA.................................................	26	0	19	0.05	1	1	0	0	0	0
................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACCATA.................................................................	26	0	20	0.05	1	0	0	1	0	0
.......................................................................................................ATAACCGCTCCTCGCACTT.................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0
..............................ATCCCCGGGTGTTGCTAG...........................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1

GTATTAATCGCTCTTAGTTGGTTAATATAATGGCGGCCTACAACGATCTCCATTCTAATTAAGAACTTGTTTATTTCAAAAGGCATTTATGACCGATAAAAAATATGGGCGAGGAGCATGACATTTTCCCATATGATCTAAGCAACTTTTCATACATTGTCCGTCTTCCTTCGCAAAGGCTGGTATATTTCATATATATTATTTGAAAAAACCACTAGCTAAATAATTTTTTTTTATATAAAAAGAAAAAT *******************************************************..........(((((....((.....((((....))))..)))))))......*******************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V058 head
.........................................................................................................TGGGCTAGCAGCCTGACAT...............................................................................................................................	19	3	7	0.86	6	6	0
........................................................................................................ATCGGCTAGCAGCATGACAT...............................................................................................................................	20	3	6	0.17	1	1	0
....................................................................................AGTTAGGACTGATAAAAAATA..................................................................................................................................................	21	3	9	0.11	1	0	1
......................................................................................................................................GATCTAAGCAACTTTTCATACATTGTC..........................................................................................	27	0	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droYak3	4:1308238-1308488 +	dya_1246	CATAATTAGC--------------------------------GA----------GAATCAA------------CCAA-----T-----TA---------TATTACCGCCGGATGTTGC-TAGAGGTAAGA---TT-----------------------------------------------AATTCTTGAACAAAT---------------------------------------------------------------------------------------AAAGTT-TTCCGTAAATA-C---TGGC---------------------TAT----TTTTTAT-------ACCCGCTCCTCG--TACTGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATAATA---AACTTTTT----TGG---------------TGAT-----CGATTTATTAAA-AAAA--AATAT----ATTTTTCTTTTTA
droEre2	scaffold_4383:6838-7038 +		TTGAAAAAATTA------AAAATTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-T---TTTA----TATTTTACTC-------TTAC---TCCTATT-------ACCCATTACTCG--TAGAGTAAAATGTTATACTAGATTTGTTCAA-------AAGTATGTAACAG-CAGAAAGAAACTTTTCCGACCATATAAAGTATATATAATA---AACTTT--TTT-TGG---------------TGAT-----AGATTTAATAAA-AAAA---ATAT----ATTTTCCTTTTTA
droSec2	scaffold_26:176110-176305 +		ATTAATTAGG--------------------------------AA----------ACAGCAA------------ATAG-----T-----AATCACCAAGA-------------GGTTAC-TAG--------TG--------------------------------------------------G-------------------AA--------------------------------------------CC---------------T-TATAT-CG--------AAAAAGCTTTTCGATG-G-GTTTCTGTCTATT-------TTT-------TTA----TTACTAT-------ACCCGTTACTTT--TATAGTAAAAGGGTATACTAGCTTCGTTTGA-------AATTATGTATAATCTTAAAGAAAGTGTTTCCGACCATATAATATATATATA--------------------------------------------------------------------------------------
droSim2	2r:9711001-9711242 -		AACAATTAGATACAATCGGAATTATACCGGTTATTATTTCGGGTTTAATCTATTAAATCGA------------ATAATTTCATATGCC-------------------------------TAGAGGCA-------------------------------GCG---------------------A-------------------AGTC-----------------------------------------------------------T-TATAT-------------------------GA-CAAA---T---------------GATACTTTCTGG----TTTTTAT-------ACCCGTTACTCG--TAGAGTGAAAGGGTATACTAGATTCGTTCAA-------AAGTATGTAACAGGCAGAAGG-----------ACTATACAAAGTATATATA----------TTCTTTATC-A---------------GGAT-----C----TGGTCAA-AAAGA--A-AA----GTTTT--------
dm3	chr2R:7235002-7235210 +		CATGATCAAGAAGA-----------------------------------------------------------------------------------------------------------------------ATATGA--ATTTT-----A---------------------------------------------------------------TAGGC-----TCGATA---------CGCAT-------------CATTCTACAT-AAGACTTACTTTATAACGATATATTCGTAA-CCAT---T------------------------TTA----TTTTTAT-------ACTCTTTACTCG--TAGAGTAAAAGTGTATAATAGATTCGTTTAA-------ATGTATCTAACAGCTACAAGTTAGTGTTTCCAATCATATAATGTACATATA----------TTCTTGATC-A---------------GGAT-----CGAT-------------------------------------
droEug1	scf7180000408954:6384-6581 -		TAGGGTTATT--------------------------------TA----------GTATAAA--------------------------------------------------------------------------------------------------------------AGA-----------------------AG-----TG-----------------------------------------------------------T-TTTAT-----------------------G---------------------TTAAACTA-------AAA----TTTTTAT-------AACCGTTACTCG--TAGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAGTATATACA----------TTCTTGATC-A---------------CGAT-----CAATTTTATTCTAAAAA--AACACAGGAATCTTCCTCATCA
droBia1	scf7180000302211:20796-21040 +		CGGAACCAGC--------------------------------CA----------GA-TCGG------------ACAA-----C-----TATATCCTATA-------------GCTCCC-ATA--------TA--------------------------------------------------G-------------------AA--------------------------------------------TT---------------A-AAGGC-AA--------AAAAAGCTTTAA--AA-A-AATTATATATTTT-------GTG-------TTT----TTTTTGA-------ACCCATTAATCG--TAGAGTAAGAGGATATACTAGATTCGTCGGA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATGT---A---TTCTTGTTTGTCTCAAAAATACCTATCGAC-----TGATCTA------AAAAAAAATGT-----------------
droTak1	scf7180000415785:179783-179970 -		ATTAGAGA----------------------------------------------AAACTAA------------TTAA-----T-----------------------------------------------------------GTAT-----T------CCG---------------------A-------------------AATTTTATAATGATTTTC-----TCAATT---------CTGAA-------------AAA----------------------AAACATTATTTTAATA-GAAT----TCC---------------------TAC----TAATTAT-------ACCCGTTACTCG--TAGAGTAAAAGGGTATACTAGATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------
droEle1	scf7180000491228:243639-243804 +		TAATACCCAAAAAG-----------------------------------------------------------------------------------------------------------------------ATAATAATGTTTTGTAAAATTG------------------A---------------------------------------------------------------------------------------------------------------------------AT-GTAC---C------------------------ATA----TTTTAAT-------ACCCGTTACTCG--TAGTCTAAAAGGGTATATTGTAATCGTTGAA-------AAGTATGTAACAGGTGGATGGAAGCGTTTCCGACCATACAAAGTATATATA----------TTCTTGATT-G---------------GGAT-----CAAT-------------------------------------
droRho1	scf7180000779331:18932-19127 +		CAAAATTAGA--------------------------------------------AAATCGA------------CTAA-----T-----T-------------------------------------------------------TAGTAAAAGTG------------------A-----------------------AT-----TG----------------------TT-TTTCTTATTGGGTGTGGTTGCTGATATA--------------CG---------AAAGTG-GTTG-GTA-TAGC---TA------------------------GG-TTTTAATTAT-------ACCCGTTACTCG--TAGGGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------
droFic1	scf7180000453851:1791184-1791372 -		CAAGCTTTGC--------------------------------AG----------AA-AAGG------------------------------------------------------------------------ATAGTTAAATTAG-----T---------------------------------------------------------------TTGGA-----TAGATT---------TGGAA-------------AAA------T-AGTTCAAAAGCCCCAAAAATTATCCGAATA-CAAC---TTCA---------------------TAT----TTTTTAT-------ACCC-----TTG--CAGAGCAAAAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------
droKik1	scf7180000302476:3065560-3065765 +		CATAAATATAAAAA----------------------------------------AAATCAA------------CAAT-----A-----TA---------TTTT-------------AC-AAG--------TGACA--------AATCTTAAAATGAATGCATATTTTTATAAT-----------------------ATTTTA---A--------------TCTGAAATTATCCCTTAACTTGTT--AATTATT------------------------------------------------------TGTTT--------------------ATT----TTATTAT-------ACCC---------------TTGCAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------
droAna3	scaffold_13337:795493-795665 +		TTAGCAA-----------------------------------------------AAATCAA------------CTAA-----T-----TA----------------------------------------------------ATTC-----A---------------------------------------------------------------TTAGA-----TTTCTCCCCCGAACTCGGCATAACTTTTG---GG--------------CG--------AAAAGTTT-----TCA-CAGT---T------------------------GGG----TTTTTAT-------ACCCTT-----G--------CAGAGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------
droBip1	scf7180000396127:1564-1758 +		TTGCCAAA-----------------------------------------------AG------------------------------------------------------------------------------------------------TGCGAACTTATTTTCGTAAA-----------------------GAGGGT---T--------------TTTTGTATTA-------------------------------------------------------------------------C---C---------TTTTATTT-------TGG----TTTTTAT-------ACCCGGTACATG--AAGGGTAAAAGGGTATATTGTAGTC---------------GTATGTAACATAGAGAAGGAAGCATCTCCGACCCCGTAAAATATATATA----------TTTG--T-CGG---------------AGATAAGTTAGATTTAATTTC-AAATA--CTGT----ATTT---------
dp5	Unknown_group_619:7219-7424 -		TAATGAA--C--------------------------------AA----------TTATCTA------------CTAA-----T-----AA---------TGGT-------------------------------------------------------ACATAATTACAAAAGG-----------------------AG----------------------------------------------------------------GAATT-AAGGTTTAATATTTTTATTGTTTCCAATAA-AAAT----TCCT---TT------AT-------CAA----TTTTTAT-------ACCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------
droPer2	scaffold_27:308406-308597 +		ATTACACA-----------------------------------------------AATT----------------------------------------TATGACCGCCCGCTGCTGC--AGCAGTAAAA---ATAATTATA--------------------------------------------------------------------------------------------------------------------------------------ATCGCGTAATAATT-CGCAATTA-ACAT----TCC---------------------CAA----TTTTTAT-------ACCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------
droWil2	scf2_1100000004884:921265-921454 -		TTTAGCAAGC--------------------------------GA----------GATCCAA--------------------------------------------------------------------------------AGTAA-----T---------------------------------------------------------------TGAAC-----TAAAAT---------CGGAA-------------TGGTAAACTT-AAAGCCAAAAGTTTGAAAAGTTTTCTAGCA-GAAT---T------------------------GGC----TTTTTAT-------ACCATACACCCA--TAGGGTGAAATGGTATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATA--------------------------------------------------------------------------------------
droVir3	scaffold_12958:2199126-2199334 -		CTCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TAAGCC----------------CCGCCGTTGCTTTCACAAAGGAA--A---TT-----------------------------------------------AATCCTTGCTTAATA---------------------------------------------------------------------------------------AACGTA-TTCATGCAATC-----CATAG--------------------ATC----TTTTTATACCCTGAACCCATTAAAA---ATGGCCATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATTTCCGACCTCATAAAGTATATATA--------------------------------------------------------------------------------------
droMoj3	scaffold_6501:203306-203506 +		TTCGCTA-----------------------------------------------AATTCAACGTGTTGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------GCG---------------------A-------------------AA-------------------------------------------------------------CTT-AATTCAGAAACTGCAGGAATCAGTGAA----GAA----TGCCT--------------------CTC----TTGTTATACCCTGAACCCATTTTCAA--TGGGAAATCAGGGTATATTGGTTTTGTTGAA-------ATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATA--------------------------------------------------------------------------------------
droGri2	scaffold_15203:3818775-3818967 -		AAATAGCAAGGAAA-----------------------------------------------------------------------------------------------------------------------ATATTTATATTGGCTACTTTTG------------------GATAAATTTTAT-----------------------------------------------------------------------------------------------------------TCTTGCA-TAGT----CCG----TA------TT-------TAA----TTTTTATACCTTAAACCCATTTTCAA--TAGGTAAAAAGGGTGTAATGGTTTTGTGGAA-------ATATATATAACACGCAGGAGGAAGCATCTTCGACCCCATAAGGTATACATG-TATATA---TTCTTGATG-A-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CATAATTAGC--------------------------------GA----------GAATCAA------------CCAA-----T-----TA---------TATTACCGCCGGATGTTGC-TAGAGGTAAGA---TT-----------------------------------------------AATTCTTGAACAAAT---------------------------------------------------------------------------------------AAAGTT-TTCCGTAAATA-C---TGGC---------------------TAT----TTTTTAT-------ACCCGCTCCTCG--TACTGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATAATA---AACTTTTT----TGG---------------TGAT-----CGATTTATTAAA-AAAA--AATAT----ATTTTTCTTTTTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAGTATGTAACAGGCAGA.......................................................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGAA-------AAGTATGTAACAGGCA.........................................................................................................................	27	20	0.25	5	0	4	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT.............................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
............................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGACCAT....................................................................................................	30	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCATATAAAGTAT...........................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATATAAAGTATATATAATA---................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACCATA...................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

TTGAAAAAATTA------AAAATTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-T---TTTA----TATTTTACTC-------TTAC---TCCTATT-------ACCCATTACTCG--TAGAGTAAAATGTTATACTAGATTTGTTCAA-------AAGTATGTAACAG-CAGAAAGAAACTTTTCCGACCATATAAAGTATATATAATA---AACTTT--TTT-TGG---------------TGAT-----AGATTTAATAAA-AAAA---ATAT----ATTTTCCTTTTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

ATTAATTAGG--------------------------------AA----------ACAGCAA------------ATAG-----T-----AATCACCAAGA-------------GGTTAC-TAG--------TG--------------------------------------------------G-------------------AA--------------------------------------------CC---------------T-TATAT-CG--------AAAAAGCTTTTCGATG-G-GTTTCTGTCTATT-------TTT-------TTA----TTACTAT-------ACCCGTTACTTT--TATAGTAAAAGGGTATACTAGCTTCGTTTGA-------AATTATGTATAATCTTAAAGAAAGTGTTTCCGACCATATAATATATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droSim2

AACAATTAGATACAATCGGAATTATACCGGTTATTATTTCGGGTTTAATCTATTAAATCGA------------ATAATTTCATATGCC-------------------------------TAGAGGCA-------------------------------GCG---------------------A-------------------AGTC-----------------------------------------------------------T-TATAT-------------------------GA-CAAA---T---------------GATACTTTCTGG----TTTTTAT-------ACCCGTTACTCG--TAGAGTGAAAGGGTATACTAGATTCGTTCAA-------AAGTATGTAACAGGCAGAAGG-----------ACTATACAAAGTATATATA----------TTCTTTATC-A---------------GGAT-----C----TGGTCAA-AAAGA--A-AA----GTTTT--------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------ACT......................................................................................................	26	1	6.00	6	0	0	2	0	0	0	1	0	1	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------A........................................................................................................	24	20	3.65	73	0	0	0	0	0	0	0	0	0	0	73	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTCAA-------AAGTATGTAACAGGCAGA.......................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTAGA.........................................................................................................................................................	25	6	2.00	12	0	0	0	0	0	0	0	1	0	2	9	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTCAA-------AAGTATGTAACAGGCA.........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------ACTT.....................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------ACTA.....................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG-----------ACTATA...................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTCAA-------AAGTATGTAACAGGC..........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATACAAAGTATATATA----------............................................................................	19	4	0.75	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAGAGTGAAAGGGTATACTAGATT.......................................................................................................................................................	24	6	0.67	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTTTAT-------ACCCGTTACTCG--TAGAGTGA.......................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG-----------ACTATAC..................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGG-----------ACTATACA.................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGG-----------ACT......................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG-----------ACT......................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCAA-------AAGTATGTAACAGGCAGAAG.....................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG-----------ACTATACA.................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------AC.......................................................................................................	25	4	0.50	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTAG..........................................................................................................................................................	24	7	0.43	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAGAGTGAAAGGGTATACTAGAT........................................................................................................................................................	23	6	0.33	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGG-----------ACTTC....................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CGTTACTCG--TAGAGTGAAAGGGTA................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG-----------A........................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GTTACTCG--TAGAGTGAAAGGGTATA..............................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTAGATTC......................................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGT.................................................................................................................................................................	17	10	0.20	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CTCG--TAGAGTGAAAGGGTATACTAGA.........................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTAGAT........................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTTTAT-------ACCCGTTACTCG--TAGAGT.........................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACTCG--TAGAGTGAAAGGGTATA..............................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTACTCG--TAGAGTGAAAGGGTATA..............................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTA...........................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACTCG--TAGAGTGAAAGGGTATACT............................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATAC.............................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGGGTATACTAGATTC......................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTA................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTTTAT-------ACCCGTTACTCG--TAGAGT.........................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGG..................................................................................................................................................................	16	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGC..........................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAGAGTGAAAGGGTATA..............................................................................................................................................................	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGG...................................................................................................................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGAAAGGGTATACTAGATTCG.....................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................G--TAGAGTGAAAGGGTATACTAGATTA......................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTAA..........................................................................................................................................................	24	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTGAAAGGGTATACTATT.........................................................................................................................................................	25	16	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GAAAGGGTATACTAGA.........................................................................................................................................................	16	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CAA-------AAGTATGTAACAGGCAGAAGG-----------AA.......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TAT-------ACCCGTTACTCG--TAGAGT.........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTTTAT-------ACCCGTTACTCG--T..............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGG-----------A........................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTTTAT-------ACCCGTTACTCG--...............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

CATGATCAAGAAGA-----------------------------------------------------------------------------------------------------------------------ATATGA--ATTTT-----A---------------------------------------------------------------TAGGC-----TCGATA---------CGCAT-------------CATTCTACAT-AAGACTTACTTTATAACGATATATTCGTAA-CCAT---T------------------------TTA----TTTTTAT-------ACTCTTTACTCG--TAGAGTAAAAGTGTATAATAGATTCGTTTAA-------ATGTATCTAACAGCTACAAGTTAGTGTTTCCAATCATATAATGTACATATA----------TTCTTGATC-A---------------GGAT-----CGAT-------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................TAATAGATTCGTTTAA-------ATGTA....................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAGAGTAAAAGTGTATAATAG..........................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCG--TAGAGTAAAAGTGTATAATAGA.........................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGATCAAGAAGA-----------------------------------------------------------------------------------------------------------------------ATATGA--ATTT.............................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................G--TAGAGTAAAAGTGTATA..............................................................................................................................................................	18	9	0.33	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA----------TTCTTGATC-A---------------GGAT-----CG.......................................	21	11	0.27	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATA----------TTCTTGATC-A---------------GGAT-----.........................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATA----------TTCTTGATC-A---------------GGAT-----.........................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATA----------TTCTTGATC-A---------------G.................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----------TTCTTGATC-A---------------GGAT-----C........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TAGGGTTATT--------------------------------TA----------GTATAAA--------------------------------------------------------------------------------------------------------------AGA-----------------------AG-----TG-----------------------------------------------------------T-TTTAT-----------------------G---------------------TTAAACTA-------AAA----TTTTTAT-------AACCGTTACTCG--TAGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAGTATATACA----------TTCTTGATC-A---------------CGAT-----CAATTTTATTCTAAAAA--AACACAGGAATCTTCCTCATCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGAACCAGC--------------------------------CA----------GA-TCGG------------ACAA-----C-----TATATCCTATA-------------GCTCCC-ATA--------TA--------------------------------------------------G-------------------AA--------------------------------------------TT---------------A-AAGGC-AA--------AAAAAGCTTTAA--AA-A-AATTATATATTTT-------GTG-------TTT----TTTTTGA-------ACCCATTAATCG--TAGAGTAAGAGGATATACTAGATTCGTCGGA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATGT---A---TTCTTGTTTGTCTCAAAAATACCTATCGAC-----TGATCTA------AAAAAAAATGT-----------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTAGAGA----------------------------------------------AAACTAA------------TTAA-----T-----------------------------------------------------------GTAT-----T------CCG---------------------A-------------------AATTTTATAATGATTTTC-----TCAATT---------CTGAA-------------AAA----------------------AAACATTATTTTAATA-GAAT----TCC---------------------TAC----TAATTAT-------ACCCGTTACTCG--TAGAGTAAAAGGGTATACTAGATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAATACCCAAAAAG-----------------------------------------------------------------------------------------------------------------------ATAATAATGTTTTGTAAAATTG------------------A---------------------------------------------------------------------------------------------------------------------------AT-GTAC---C------------------------ATA----TTTTAAT-------ACCCGTTACTCG--TAGTCTAAAAGGGTATATTGTAATCGTTGAA-------AAGTATGTAACAGGTGGATGGAAGCGTTTCCGACCATACAAAGTATATATA----------TTCTTGATT-G---------------GGAT-----CAAT-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAAATTAGA--------------------------------------------AAATCGA------------CTAA-----T-----T-------------------------------------------------------TAGTAAAAGTG------------------A-----------------------AT-----TG----------------------TT-TTTCTTATTGGGTGTGGTTGCTGATATA--------------CG---------AAAGTG-GTTG-GTA-TAGC---TA------------------------GG-TTTTAATTAT-------ACCCGTTACTCG--TAGGGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAGCTTTGC--------------------------------AG----------AA-AAGG------------------------------------------------------------------------ATAGTTAAATTAG-----T---------------------------------------------------------------TTGGA-----TAGATT---------TGGAA-------------AAA------T-AGTTCAAAAGCCCCAAAAATTATCCGAATA-CAAC---TTCA---------------------TAT----TTTTTAT-------ACCC-----TTG--CAGAGCAAAAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATAAATATAAAAA----------------------------------------AAATCAA------------CAAT-----A-----TA---------TTTT-------------AC-AAG--------TGACA--------AATCTTAAAATGAATGCATATTTTTATAAT-----------------------ATTTTA---A--------------TCTGAAATTATCCCTTAACTTGTT--AATTATT------------------------------------------------------TGTTT--------------------ATT----TTATTAT-------ACCC---------------TTGCAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTAGCAA-----------------------------------------------AAATCAA------------CTAA-----T-----TA----------------------------------------------------ATTC-----A---------------------------------------------------------------TTAGA-----TTTCTCCCCCGAACTCGGCATAACTTTTG---GG--------------CG--------AAAAGTTT-----TCA-CAGT---T------------------------GGG----TTTTTAT-------ACCCTT-----G--------CAGAGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................A-------AAGTGTGCAACGCAGTGAAG.....................................................................................................................	21	20	0.15	3	0	0	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAG..................................................................................................................	20	20	0.15	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGAGACATCTCCGACCC.....................................................................................................	22	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCCGACCCTA...................................................................................................	26	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAA-------AAGTGTGCAACGCA...........................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATC.............................................................................................................	20	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGAC................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGGTCAA-------AAGTGTG..................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAA-------AAGTGTGCAACGCAGTG........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCTT-----G--------CAGAGGGTATTATAATTTTGGTC..................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCCGAC.......................................................................................................	22	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCC..........................................................................................................	22	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGAAGGAGACATCTCCGACCCTA...................................................................................................	28	20	0.05	1	1	0	0	0	0	0

droBip1

TTGCCAAA-----------------------------------------------AG------------------------------------------------------------------------------------------------TGCGAACTTATTTTCGTAAA-----------------------GAGGGT---T--------------TTTTGTATTA-------------------------------------------------------------------------C---C---------TTTTATTT-------TGG----TTTTTAT-------ACCCGGTACATG--AAGGGTAAAAGGGTATATTGTAGTC---------------GTATGTAACATAGAGAAGGAAGCATCTCCGACCCCGTAAAATATATATA----------TTTG--T-CGG---------------AGATAAGTTAGATTTAATTTC-AAATA--CTGT----ATTT---------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TAATGAA--C--------------------------------AA----------TTATCTA------------CTAA-----T-----AA---------TGGT-------------------------------------------------------ACATAATTACAAAAGG-----------------------AG----------------------------------------------------------------GAATT-AAGGTTTAATATTTTTATTGTTTCCAATAA-AAAT----TCCT---TT------AT-------CAA----TTTTTAT-------ACCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG.........................................................................................................	20	20	0.80	16	0	0	0	0	0	0	16	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTC...........................................................................................................................	20	20	0.70	14	0	0	0	0	0	0	14	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGTC...........................................................................................................................	21	20	0.35	7	0	0	0	0	0	7	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCCAT..................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATG......................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAAGGAAT.................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCGATACTCAAAATGAGTAT.......................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TATTGGGGTATATTAGATTTGT....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T-------ACCCGATACTCAAAATGA...........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACGTC...........................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGGTAAAAGTGGAT.......................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGAC.......................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0

droPer2

ATTACACA-----------------------------------------------AATT----------------------------------------TATGACCGCCCGCTGCTGC--AGCAGTAAAA---ATAATTATA--------------------------------------------------------------------------------------------------------------------------------------ATCGCGTAATAATT-CGCAATTA-ACAT----TCC---------------------CAA----TTTTTAT-------ACCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACG.............................................................................................................................	19	20	4.65	93	0	0	0	0	0	93
...........................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGT.................................................................................................................................	18	20	0.45	9	0	0	0	0	0	9
...............................................................................................................................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAG............................................................................................................................................	19	20	0.20	4	0	0	0	0	0	4
..............................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGGATG......................................................................................................................................	26	20	0.15	3	0	0	0	0	0	3
.............................................................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGGTAAAAGTGG.........................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTA................................................................................................................................	18	20	0.10	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGG....................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droWil2

TTTAGCAAGC--------------------------------GA----------GATCCAA--------------------------------------------------------------------------------AGTAA-----T---------------------------------------------------------------TGAAC-----TAAAAT---------CGGAA-------------TGGTAAACTT-AAAGCCAAAAGTTTGAAAAGTTTTCTAGCA-GAAT---T------------------------GGC----TTTTTAT-------ACCATACACCCA--TAGGGTGAAATGGTATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTCGCCAAA-------ATGTATGTAAC..............................................................................................................................	24	20	0.20	4	0	0	0	4	0

droVir3

CTCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TAAGCC----------------CCGCCGTTGCTTTCACAAAGGAA--A---TT-----------------------------------------------AATCCTTGCTTAATA---------------------------------------------------------------------------------------AACGTA-TTCATGCAATC-----CATAG--------------------ATC----TTTTTATACCCTGAACCCATTAAAA---ATGGCCATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATTTCCGACCTCATAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGA...................................................................................................................	27	20	2.30	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGG....................................................................................................................	20	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........T--------------------------------GC----------TCATCAA------------CCAA-----TAAGCC----------------CCGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATT.............................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATT.............................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC..........................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTAAAA---ATGGCCATAAGGGTATAT.............................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATTT............................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................TTAAAA---ATGGCCATAAGGGTATATT............................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATTT............................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.TCATTTCGT--------------------------------GC----------TCATCAA------------CCAA-----TAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCATTTCGT--------------------------------GC----------TCATCAA------------CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCAAAATCCAAAT.......................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATT.............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGA.......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATATTGTATTTGTGC..................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATTTCC..........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATT.............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCATT.............................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATTTCCGA........................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATTT............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTCGCTA-----------------------------------------------AATTCAACGTGTTGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------GCG---------------------A-------------------AA-------------------------------------------------------------CTT-AATTCAGAAACTGCAGGAATCAGTGAA----GAA----TGCCT--------------------CTC----TTGTTATACCCTGAACCCATTTTCAA--TGGGAAATCAGGGTATATTGGTTTTGTTGAA-------ATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................T-AATTCAGAAACTGCAGGAATCAGTC........................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.67	4	3	0	0	0	0	1
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.50	3	2	0	0	0	0	1
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.33	2	1	0	0	0	0	1
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------A........................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.33	2	2	0	0	0	0	0
...................................................................GAATTACAGA-----TATGAC-------------------------------TAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.33	2	1	0	0	0	0	1
.......................................................................TACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------GC..............................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.25	2	1	0	0	0	1	0
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------G...............................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	0	0	0	0	1
...................................................................GAATTACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
..................................................................TGAATTACAGA-----TATGAC-------------------------------TAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	1	0	0	0	0	0
...................................................................GAATTACAGA-----TATGAC-------------------------------TAGGAGGA------.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGGAGAAGGA...................................................................................................................	20	20	0.15	3	1	0	0	0	0	2
...........................................................................GA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------GCG---------------------A-------------------AA-------------------------------------------------------------CT...................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	1
.......................................................................TACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------GCG---------------------A-------------------AA-------------------------------------------------------------C....................................................................................................................................................................................................................................................................................	29	7	0.14	1	1	0	0	0	0	0
.......................................................................TACAGA-----TATGAC-------------------------------TAGGAGGA------A........................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	1	0	0	0	0	0
.......................................................................TACAGA-----TATGAC-------------------------------TAGGAGGA------AT-----------------------G...............................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCGTGGCAGACCCCACAAA...............................................................................................	26	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATATTGGTT........................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TGAA-------ATGTATGTAACAGGGA.........................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGAA-------ATGTATGTAACAGGGAG........................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATATTGGTTTTG.....................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTTTCA..................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGGAGAAGGAGGCGTGG............................................................................................................	21	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGGAGAAGGAGGCGTGG............................................................................................................	22	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATATTGGTTTTGT....................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATATTGGTTTT......................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

AAATAGCAAGGAAA-----------------------------------------------------------------------------------------------------------------------ATATTTATATTGGCTACTTTTG------------------GATAAATTTTAT-----------------------------------------------------------------------------------------------------------TCTTGCA-TAGT----CCG----TA------TT-------TAA----TTTTTATACCTTAAACCCATTTTCAA--TAGGTAAAAAGGGTGTAATGGTTTTGTGGAA-------ATATATATAACACGCAGGAGGAAGCATCTTCGACCCCATAAGGTATACATG-TATATA---TTCTTGATG-A-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_1246

4:1308288-1308438 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.1	-3.0	-2.9