dya_124

GCTAATCGCGGGCGAGCTGATTCAGGATTACGAGGACGAAGTGCATCCAGGTGGGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTTGTACTCGGAAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGACGCAAAGGGCAGCGGAGAACATTTCAATTGGTTTATTAGTTCATACATATTCGAAT **************************************************..((((((((((..(((.((.(((.((((((..((((..............)))).)))))).))).)).))).)))))))...))).**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V120 male body	M026 head	V058 head	M043 female body	V052 head	M056 embryo	V046 embryo
........................................................................................................GTGTCCAGTGCCGTTGATTGC...................................................................	21	0	1	38.00	38	20	7	5	1	4	1	0
........................................................................................................GTGTCCAGTGCCGTTGATTG....................................................................	20	0	1	27.00	27	23	1	2	0	1	0	0
........................................................................................................GTGTCCAGTGCCGTTGATTGCA..................................................................	22	0	1	7.00	7	0	4	0	2	0	1	0
...................................................................CACTCTACGCCGCTGGCTTACG.......................................................................................................	22	0	1	7.00	7	2	3	0	1	0	0	1
...................................................................CACTCTACGCCGCTGGCTTACGT......................................................................................................	23	0	1	5.00	5	5	0	0	0	0	0	0
.........................................................................................................TGTCCAGTGCCGTTGATTGC...................................................................	20	0	1	4.00	4	2	2	0	0	0	0	0
........................................................................................................GTGTCCAGTGCCGTTGATT.....................................................................	19	0	1	2.00	2	1	0	1	0	0	0	0
..........................................................................................................GTCCAGTGCCGTTGATTGCAG.................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................GTGTCCAGTGCCGTTGATTT....................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................TGTCCAGTGCCGTTGATTGCA..................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................GTGTACAGTGCCGCTGATTGC...................................................................	21	2	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................GTGTCCAGTGCCGGTGATTGCA..................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................GTGTCCAGGGCCGTTGATTGC...................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................TGTCCAGTGCCGTTGATTGCAG.................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................TGTCCAGTGACGTTGATTGCAGT................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................TGTCCAGTGCCGTTGATTGCAGT................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................GTGTCCAGTGCCGTTGATTGCAA.................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................GTGTCCAGTGCCGTTGACTG....................................................................	20	1	1	1.00	1	0	1	0	0	0	0	0
...................................................................CACTCTACGCTGCTGGCTTACGT......................................................................................................	23	1	1	1.00	1	0	0	0	1	0	0	0
...................................................................CATTCGACGACGCTGGCTTACGT......................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................GTGTCCAGAGCCGTTGATTGCA..................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................GTGTCCAGTGCCGTTGATTGTT..................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................GTGCCCAGTGCCGTTGATT.....................................................................	19	1	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................GGGCACAGTGCCGTTGATTGC...................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0
........................................................................................................GTGGCCAGTGCCGTGGCTTGC...................................................................	21	3	16	0.06	1	0	0	1	0	0	0	0
....................................................................ACTCTAACCCGCTGGCATA.........................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0

CGATTAGCGCCCGCTCGACTAAGTCCTAATGCTCCTGCTTCACGTAGGTCCACCCGCCGTGTCGGTCGTGAGATGCGGCGACCGAATGCAACATGAGCCTTTAGCACAGGTCACGGCAACTAACGTCAACACACCTGCGTTTCCCGTCGCCTCTTGTAAAGTTAACCAAATAATCAAGTATGTATAAGCTTA **************************************************..((((((((((..(((.((.(((.((((((..((((..............)))).)))))).))).)).))).)))))))...))).**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M026 head	V058 head	M043 female body	V052 head
.....................................................CCGCCGTGTCAGTCTTGAGCT......................................................................................................................	21	3	1	1.00	1	1	0	0	0
..............................................................CGGTCGTGAGGTGCGGCGAA..............................................................................................................	20	2	2	0.50	1	0	1	0	0
...............CGACTAGGTGCTAATGATC..............................................................................................................................................................	19	3	14	0.43	6	0	0	6	0
.............................................................TCGGTCGTGAGGGGCGGCGAA..............................................................................................................	21	3	5	0.20	1	0	0	0	1
..............................................................CGGTCGAGAGGTGCGGCGAA..............................................................................................................	20	3	14	0.07	1	0	1	0	0

Species	Coordinate	ID	Type	Alignment
droYak3	X:11883709-11883900 -	dya_124	confident	GC---------------TAATCGCGGGCGAGCTGATTCAGGATTACGAGGACGAAGTG---C---ATCCAGGTGGGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTTGTA----CTCGG-AAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGACGCAA-AGGGCAGCGG--------AG-----------------------AACATTTCAA-TTG-----GT--TTATTA---------GTTCATACATATTCG-----------AAT-
droEre2	scaffold_4690:9691149-9691350 +	der_173	confident	GC---------------TTATCGCGGGTGACCTGATTCAGGATTAAGAGGACGAAGTG---C---ATCC-AGTGGGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTTGTA----CTCGA-AAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGACGCAA-AGGGCAGCGG--------AG-----------------------GACATTTCAA-ATG-----GT--TTATTG---------GTTCATACATAATTACATACATACATAAT-
droSec2	scaffold_8:1737830-1738009 +	dse_72	confident	GC---------------TTGTCGCGGATGACCTGGTT---------GAGGACGAAGTA------------GATTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGTA----GTCGA-GAATCGTGTCCAGTCCCGTAAATTGCAGTTGTGTGGACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTACATACATATTCG-----------AAT-
droSim2	x:18344804-18344983 +	dsi-mir-978a	Known_mirbase	GC---------------TTGTCGCGGATGACCTGGTT---------GAGGACGAAGTA------------GATTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGTG----GTCGA-GAATCGTGTCCAGTGCCGTATATTGCAGTTGTGTGGACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTTCATACATATTCG-----------AAT-
dm3	chrX:19455225-19455413 +	dme-mir-978	Known_mirbase	GC---------------TTATCGCGGATGACCTGGTT---------GACGACGAAGTA---CAATATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCA----ATCGA-AAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTTCATACATATTCG-----------AAT-
droEug1	scf7180000409230:877301-877503 -			GT---------------TTATCGCAAGGAAAC-------------AAATGACAAAGTAGTGATAGATCCTGGTTGGCGGCACAGCCAGCAGTCGACGCCGCTGGCTAACGTTGTT----CACGATACACCGTGTCCAGTGACGTCGATTGCAATTGTGTAGACGCAA-ACGGCAGCGG-C-------A-----------------------GACATCTTAT-TAAGTTTTGTTTTTATTATTAATATTAGTACATAAATATTCG-----------AGTG
droBia1	scf7180000302069:1148098-1148291 -			GT---------------CCATCGCGAGGG-----------------GGAAACGAGGTAATCTGGGATCCTGGTCGGCGGCACAACCAGCATTCGACGTCGCTGGCTTACGTTGCT----CCTAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCAAGAGG----TG-----------------------TACATTTAAT-TGG-----GT--TTATTAGTAGTAGTAGTTCATAAATATTCG-----------AGT-
droTak1	scf7180000415169:841989-842208 -			GCAA-------TCGA--TCCTAGCAGG----CTAAG---------AAAGGACGAAGTGACGAAGGATCCTGGTCGGCGGCACAGCCAGCATTCGACGCCGCTGGCTTACGTTGCT----CCCAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCGA-TAG----AGACCTACAATCTTCATCTTCCACTTACATTTCAT-TAG-----GT--TTATTA------TTAGTTTATAAATATTCG-----------AGT-
droEle1	scf7180000490751:1121820-1121978 +			G----------------------------------------------------AAGTG---AATCCCCAAAGTCGGCGGCACAGCCAGCATTCTACGCCTCTGGCTTACGTTGCC----CTTGG-AACCCGTGTCCAGTGACGTTGAATGCAATTGTGTAGACGCAA-ACGGCAGCGA--------GT-----------------------CCAATTTCGATTGG-----GT--TTATTT---------AAATATAAATATTCG-----------AGT-
droRho1	scf7180000761121:187236-187430 -			CCAGAGCAAGATCGGGTTTGTTGCGGCAG----------------AAAGGACGAAGTG---AAGGATCTACGTCGGCGGCACAGCCAGCATTCAACGCCGCTGGCTTACGTTGTC----CATAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCGA--------CA-----------------------GACAATTTAATTGG-----GT--TTATTA---------AAACATAAATATTAG-----------AAT-
droFic1	scf7180000454073:1735926-1736118 +			AA---------TCGCTTCCGTGTCA--------------AAAAAGAAAGGACGAACTGCGGCGGAATAGTGGTCGTCAGCACGAGCAGCAATCGACGCCTTTGGCTAACGTTGAT----C-TGA-AAATCGTGTCCAGTGACGTTGATTGCAATTGTGTGGACGCAAGACGGCAGA-G-TGA----TC-----------------------TTCTTTTAAA-TT----TAGT--TTATTA---------AAACATAAATATTAG-----------TAT-
droKik1	scf7180000302517:1186459-1186561 +			A---------------------------------------------------------------------GGTCGGCGGCGCAAGCAGCATTCTACGGCACTGGCCAACGTGGAT----CTTTAAAAGTCGTGTCCAGTGACGTGGA-TGCAGTTGTGCAGACGTTA-ACGTCAGCGG-----------------------------------------------------------------------------------------------------
droAna3	scaffold_13417:2460469-2460637 -	dan_122	confident	C-------------------------------GGAGT---------GCGGAC-----------AGGGCAAGCTCGGCGGCACAGACAGCATTCGACGCTGCTGGCTTACGTGGTG----GTTGA-TATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGACGCGA-ATTACAGCGA-CCGATAGTT-----------------------GGCATTTCAT-GGC-----GT--TTATTA---------GAACATAAATATTCG-----------AAT-
droBip1	scf7180000395874:32534-32682 -			A---------------------------------------------------------------------GCTCGGCGGCACAGACAGCATTCGACGCTACTGGCTTACGTTTTG----GTTGA-AATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGACGCGA-AT-GCAGCGA-CTGTTAGGT-----------------------GGAATTTTAT-GGC-----GT--TTATTA---------A-AAATAAATATTCG-----------AGT-
droWil2	scf2_1100000004909:7961117-7961225 +	dwi_76	confident	--------------------------------------------------------------------------GGCAACACAGGCAGCATTCGACGACGCTGGCTTACGTTAAAAACAAACGA-TATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTA----CAA-TGATTAGCGG-CGA----T-----------------------------TTA--------------------------------------------A-----------ATT-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

GC---------------TAATCGCGGGCGAGCTGATTCAGGATTACGAGGACGAAGTG---C---ATCCAGGTGGGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTTGTA----CTCGG-AAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGACGCAA-AGGGCAGCGG--------AG-----------------------AACATTTCAA-TTG-----GT--TTATTA---------GTTCATACATATTCG-----------AAT-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................GTGTCCAGTGCCGTTGATTGC................................................................................................................................	21	1	38.00	38	7	1	1	0	4	5	20	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTG.................................................................................................................................	20	1	27.00	27	1	0	0	0	1	2	23	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCA...............................................................................................................................	22	1	7.00	7	4	2	1	0	0	0	0	0	0	0	0
........................................................................................CACTCTACGCCGCTGGCTTACG.........................................................................................................................................................................	22	1	7.00	7	3	1	0	1	0	0	2	0	0	0	0
........................................................................................CACTCTACGCCGCTGGCTTACGT........................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGC................................................................................................................................	20	1	4.00	4	2	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATT..................................................................................................................................	19	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
....................................................................................................................................GTCCAGTGCCGTTGATTGCAG..............................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTT.................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCA...............................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAG..............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAGT.............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCAA..............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGTT...............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

GC---------------TTATCGCGGGTGACCTGATTCAGGATTAAGAGGACGAAGTG---C---ATCC-AGTGGGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTTGTA----CTCGA-AAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGACGCAA-AGGGCAGCGG--------AG-----------------------GACATTTCAA-ATG-----GT--TTATTG---------GTTCATACATAATTACATACATACATAAT-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................GTGTCCAGTGCCGTTGATTGC................................................................................................................................	21	1	311.00	311	5	0	10	0	196	100	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTG.................................................................................................................................	20	1	202.00	202	1	0	2	0	158	41	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAA..............................................................................................................................	22	1	68.00	68	1	0	1	0	19	47	0
........................................................................................CATTCTACGCCGCTGGCTTACGT........................................................................................................................................................................	23	1	40.00	40	0	0	1	0	29	10	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGC................................................................................................................................	20	1	19.00	19	2	0	1	0	7	9	0
..................................................................................................................................GTGTCCAGTGCCGTTGATT..................................................................................................................................	19	1	17.00	17	0	0	1	0	13	3	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGT................................................................................................................................	21	1	12.00	12	0	0	0	0	10	2	0
........................................................................................CATTCTACGCCGCTGGCTTACG.........................................................................................................................................................................	22	1	10.00	10	0	0	0	0	8	2	0
......................................................................................AGCATTCTACGCCGCTGGCTTACG.........................................................................................................................................................................	24	1	9.00	9	2	0	0	0	5	2	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCA...............................................................................................................................	22	1	8.00	8	7	0	0	0	1	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCA...............................................................................................................................	21	1	4.00	4	1	0	0	0	0	3	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGA................................................................................................................................	21	1	4.00	4	0	0	1	0	1	2	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAAA.............................................................................................................................	23	1	4.00	4	0	0	0	0	2	2	0
....................................................................C-AGTGGGCGGCACAACCAG...............................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	2	1	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTT.................................................................................................................................	20	1	3.00	3	0	0	0	0	2	1	0
...................................................................................................................................TGTCCAGTGCCGTTGATTG.................................................................................................................................	19	1	3.00	3	0	0	1	0	2	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCT...............................................................................................................................	22	1	2.00	2	0	0	0	0	1	1	0
......................................................................................AGCATTCTACGCCGCTGGCTTA...........................................................................................................................................................................	22	1	2.00	2	1	0	1	0	0	0	0
......................................................................................AGCATTCTACGCCGCTGGCT.............................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCAA..............................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGATTGCTT..............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAT..............................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................AGCATTCTACGCCGCTGGCTTACGT........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................CGTGTCCAGTGCCGTTGATTG.................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................ATTCTACGCCGCTGGCTTACG.........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................ATTCTACGCCGCTGGCTTACGT........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................AGCATTCTACGCCGCTGGCTT............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................TGTCCAGTGCCGTTGATTGCAAT.............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................GTGTCCAGTGCCGTTGAT...................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0

droSec2

GC---------------TTGTCGCGGATGACCTGGTT---------GAGGACGAAGTA------------GATTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGTA----GTCGA-GAATCGTGTCCAGTCCCGTAAATTGCAGTTGTGTGGACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTACATACATATTCG-----------AAT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAG..............................................................................................................................	22	1	221.00	221	1	194	7	19
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAGT.............................................................................................................................	23	1	123.00	123	0	113	1	9
...................................................................................................................................TGTCCAGTCCCGTAAATTGCA...............................................................................................................................	21	1	38.00	38	1	18	0	19
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAGTT............................................................................................................................	24	1	6.00	6	0	6	0	0
...................................................................................................................................TGTCCAGTCCCGTAAATTGC................................................................................................................................	20	1	2.00	2	0	1	0	1
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAGA.............................................................................................................................	23	1	2.00	2	0	2	0	0
........................................................................................CAATCTACGCCACTGGCTTACGT........................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAT..............................................................................................................................	22	1	1.00	1	0	1	0	0
......................................................................................TGCAATCTACGCCACTGGCTTACG.........................................................................................................................................................................	24	1	1.00	1	0	0	0	1
...................................................................................................................................TGTCCAGTCCCGTAAATTG.................................................................................................................................	19	1	1.00	1	1	0	0	0
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAGTA............................................................................................................................	24	1	1.00	1	0	0	0	1
..................................................................................................................................GTGTCCAGTCCCGTAAATTG.................................................................................................................................	20	1	1.00	1	0	0	0	1
..................................................................................................................................GTGTCCAGTCCCGTAAATTGCAG..............................................................................................................................	23	1	1.00	1	0	1	0	0
........................................................................................CAATCTACGCCACTGGCTTACGTT.......................................................................................................................................................................	24	1	1.00	1	1	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTA...........................................................................................................................................................................	22	1	1.00	1	0	0	0	1
...................................................................................................................................TGTCCAGTCCCGTAAATTGCAGTTT...........................................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................TGCAATCTACGCCACTGGCTTAC..........................................................................................................................................................................	23	1	1.00	1	0	0	0	1

droSim2

GC---------------TTGTCGCGGATGACCTGGTT---------GAGGACGAAGTA------------GATTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGTG----GTCGA-GAATCGTGTCCAGTGCCGTATATTGCAGTTGTGTGGACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTTCATACATATTCG-----------AAT-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................TGTCCAGTGCCGTATATTGCAG..............................................................................................................................	22	1	950.00	950	0	6	0	0	644	13	0	0	0	1	0	0	0	285	0	1	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCA...............................................................................................................................	22	1	285.00	285	1	4	0	0	197	2	0	0	0	0	0	0	0	81	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGC................................................................................................................................	21	1	223.00	223	0	1	0	0	193	2	0	0	0	0	0	0	0	27	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCA...............................................................................................................................	21	1	180.00	180	0	1	0	0	141	1	0	0	0	0	0	0	0	36	0	1	0
...................................................................................................................................TGTCCAGTGCCGTATATT..................................................................................................................................	18	1	149.00	149	0	0	0	0	143	6	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATAT...................................................................................................................................	18	1	115.00	115	0	0	0	0	112	3	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGC................................................................................................................................	20	1	91.00	91	0	0	0	0	87	1	0	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTG.................................................................................................................................	19	1	60.00	60	1	2	0	0	56	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATT..................................................................................................................................	19	1	52.00	52	0	0	0	0	52	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTG.................................................................................................................................	20	1	52.00	52	0	2	0	0	32	2	0	0	0	0	0	0	0	16	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAG..............................................................................................................................	23	1	36.00	36	0	0	0	0	16	2	0	0	0	0	0	0	0	17	0	1	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAGT.............................................................................................................................	23	1	34.00	34	0	1	0	0	20	1	0	0	0	0	1	0	0	11	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTAC..........................................................................................................................................................................	23	1	11.00	11	0	0	0	0	9	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................CAATCTACGCCACTGGCTTACGT........................................................................................................................................................................	23	1	9.00	9	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAGA.............................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	2	1	0	0	0	0	0	4	0	0	0
......................................................................................TGCAATCTACGCCACTGG...............................................................................................................................................................................	18	1	7.00	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAGTT............................................................................................................................	24	1	6.00	6	0	0	0	0	4	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................TGCAATCTACGCCACTGGC..............................................................................................................................................................................	19	1	6.00	6	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTACG.........................................................................................................................................................................	24	1	5.00	5	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................GCAATCTACGCCACTGGCTTAC..........................................................................................................................................................................	22	1	5.00	5	0	0	0	0	1	0	0	0	0	0	0	0	0	4	0	0	0
......................................................................................TGCAATCTACGCCACTGGCT.............................................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAGAA............................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAA..............................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................CAATCTACGCCACTGGCTTAC..........................................................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AATCTACGCCACTGGCTTACGT........................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................GCAATCTACGCCACTGGCTTACG.........................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................GCAATCTACGCCACTGGC..............................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAT..............................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTT.................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAA..............................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
........................................................................................CAATCTACGCCACTGGCT.............................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GTCCAGTGCCGTATATTGC................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCAATCTACGCCACTGGCTTA...........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAAAA............................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................GTCCAGTGCCGTATATTGCAG..............................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTACA.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTA...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTT............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTGCAT..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................TTGTGTGGACGCAA-ACGGCAGCAG-CGA----A............................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................CAATCTACGCCACTGGCTT............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................A------------GATTGGCGGCACAATCT................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAGA.............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................CAGTGCCGTATATTGCAG..............................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAATCTACGCCACTGGCTTACG.........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCCAGTGCCGTATATTTT................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................GTCCAGTGCCGTATATTG.................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................T---------GAGGACGAAGTA------------GATTGGCGGC.......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTATATTGCAGT.............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................CGTGTCCAGTGCCGTATATT..................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

dm3

GC---------------TTATCGCGGATGACCTGGTT---------GACGACGAAGTA---CAATATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCA----ATCGA-AAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAA-ACGGCAGCAG-CGA----AG-----------------------GACATTTTAA-TTG-----GT--TTATTG---------GTTCATACATATTCG-----------AAT-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................TGTCCAGTGCCGTAAATTGCAGT.............................................................................................................................	23	1	26075.00	26075	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	148	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	4	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	2	0	3	0	0	34	0	0	6	0	0	0	0	0	0	3	0	2	0	0	2	0	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	360	0	594	0	0	0	0	178	0	699	2	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	1	9	1	0	0	5	1	1	7	2	0	12	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	8	0	0	2	0	0	4	0	2	0	0	0	0	0	1	2	19	0	1387	4	0	1	0	2	0	1	10	0	1	0	3	0	2	0	18	0	0	1	1	3	1	3	21	2	16	1	11	0	0	0	0	3	38	1	72	47	0	0	2	5	2	2	4	18723	7	0	0	1	7	0	39	2	9	0	28	1	9	2	1	3	6	3357	3	31	0
...................................................................................................................................TGTCCAGTGCCGTAAATTGCAG..............................................................................................................................	22	1	25815.00	25815	0	0	0	0	0	5	0	0	1	1	2	18	1	0	0	0	0	1	0	0	0	0	1	4638	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	16	0	1	0	2	1	11	0	1	89	0	1	101	0	0	7	13	3	2	0	0	4	8	3	5	0	108	6	1	0	8	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	1	10	0	1	0	1	0	1	0	0	0	0	0	0	3	1062	4	1554	0	0	0	0	709	0	1185	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	9	20	0	1	0	4	0	0	2	2	1	8	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	78	1	0	41	0	1	7	1	4	0	1	0	0	0	1	0	31	3	3000	4	0	6	0	2	2	0	7	0	1	0	8	0	0	0	9	0	0	3	4	17	6	7	12	3	30	0	3	1	0	0	0	0	53	0	58	54	0	0	1	1	0	7	1	6435	1	0	0	0	4	0	19	1	11	0	35	1	4	3	0	0	10	6115	1	21	0
..................................................................................................................................GTGTCCAGTGCCGTAAATTG.................................................................................................................................	20	1	5479.00	5479	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1447	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	25	0	0	0	0	0	3	0	0	0	0	0	1	0	3	2	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	94	0	376	0	0	0	0	97	0	161	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	71	0	0	27	0	0	2	1	1	0	0	0	0	0	0	0	6	1	275	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	1	0	1	3	0	0	0	6	0	0	0	0	0	0	0	14	0	11	23	0	0	0	0	2	2	1	1170	0	0	0	0	2	0	13	0	5	0	11	0	2	2	0	0	4	1566	1	7	0
..................................................................................................................................GTGTCCAGTGCCGTAAATTGC................................................................................................................................	21	1	4791.00	4791	0	0	0	0	0	2	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	1409	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	1	3	1	0	92	2	3	40	0	0	2	3	2	5	1	0	2	3	0	4	0	59	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	40	0	169	0	0	0	0	26	0	121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	4	0	1	6	1	0	0	0	0	1	0	0	2	0	1	269	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	0	0	4	0	0	0	0	0	0	0	3	0	2	11	1	0	0	4	0	0	0	1558	1	0	0	0	0	0	16	0	6	0	6	0	11	4	0	0	0	821	0	7	0
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....................................................................................................................................GTCCAGTGCCGTAAATTGCAGTT............................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
......................................................................................TGCAATCTACGCCACTGGCTTAT..........................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TCCAGTGCCGTAAATTGCAG..............................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTAAATTGCATC.............................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCAATCTACGCCACTGGCTTA...........................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................CAATCTACGCCACTGGCTTACGC........................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................GTGTCCAGTGCCGTAAATTGCAAA.............................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GT---------------TTATCGCAAGGAAAC-------------AAATGACAAAGTAGTGATAGATCCTGGTTGGCGGCACAGCCAGCAGTCGACGCCGCTGGCTAACGTTGTT----CACGATACACCGTGTCCAGTGACGTCGATTGCAATTGTGTAGACGCAA-ACGGCAGCGG-C-------A-----------------------GACATCTTAT-TAAGTTTTGTTTTTATTATTAATATTAGTACATAAATATTCG-----------AGTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GT---------------CCATCGCGAGGG-----------------GGAAACGAGGTAATCTGGGATCCTGGTCGGCGGCACAACCAGCATTCGACGTCGCTGGCTTACGTTGCT----CCTAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCAAGAGG----TG-----------------------TACATTTAAT-TGG-----GT--TTATTAGTAGTAGTAGTTCATAAATATTCG-----------AGT-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAA-------TCGA--TCCTAGCAGG----CTAAG---------AAAGGACGAAGTGACGAAGGATCCTGGTCGGCGGCACAGCCAGCATTCGACGCCGCTGGCTTACGTTGCT----CCCAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCGA-TAG----AGACCTACAATCTTCATCTTCCACTTACATTTCAT-TAG-----GT--TTATTA------TTAGTTTATAAATATTCG-----------AGT-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G----------------------------------------------------AAGTG---AATCCCCAAAGTCGGCGGCACAGCCAGCATTCTACGCCTCTGGCTTACGTTGCC----CTTGG-AACCCGTGTCCAGTGACGTTGAATGCAATTGTGTAGACGCAA-ACGGCAGCGA--------GT-----------------------CCAATTTCGATTGG-----GT--TTATTT---------AAATATAAATATTCG-----------AGT-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAGAGCAAGATCGGGTTTGTTGCGGCAG----------------AAAGGACGAAGTG---AAGGATCTACGTCGGCGGCACAGCCAGCATTCAACGCCGCTGGCTTACGTTGTC----CATAA-AAACCGTGTCCAGTGACGTTGATTGCAATTGTGTAGACGCAA-ACGGCAGCGA--------CA-----------------------GACAATTTAATTGG-----GT--TTATTA---------AAACATAAATATTAG-----------AAT-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AA---------TCGCTTCCGTGTCA--------------AAAAAGAAAGGACGAACTGCGGCGGAATAGTGGTCGTCAGCACGAGCAGCAATCGACGCCTTTGGCTAACGTTGAT----C-TGA-AAATCGTGTCCAGTGACGTTGATTGCAATTGTGTGGACGCAAGACGGCAGA-G-TGA----TC-----------------------TTCTTTTAAA-TT----TAGT--TTATTA---------AAACATAAATATTAG-----------TAT-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A---------------------------------------------------------------------GGTCGGCGGCGCAAGCAGCATTCTACGGCACTGGCCAACGTGGAT----CTTTAAAAGTCGTGTCCAGTGACGTGGA-TGCAGTTGTGCAGACGTTA-ACGTCAGCGG-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

C-------------------------------GGAGT---------GCGGAC-----------AGGGCAAGCTCGGCGGCACAGACAGCATTCGACGCTGCTGGCTTACGTGGTG----GTTGA-TATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGACGCGA-ATTACAGCGA-CCGATAGTT-----------------------GGCATTTCAT-GGC-----GT--TTATTA---------GAACATAAATATTCG-----------AAT-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................GTGTCCAGTGACGTTGATTGCA...............................................................................................................................	22	1	115.00	115	104	0	0	0	6	5
...................................................................................................................................TGTCCAGTGACGTTGATTGCAG..............................................................................................................................	22	1	105.00	105	13	0	0	20	52	20
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGT.............................................................................................................................	23	1	104.00	104	11	0	0	10	67	16
..................................................................................................................................GTGTCCAGTGACGTTGATTGC................................................................................................................................	21	1	83.00	83	13	1	0	0	19	50
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAT..............................................................................................................................	23	1	70.00	70	1	0	0	2	38	29
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAG..............................................................................................................................	23	1	55.00	55	3	0	0	4	14	34
..................................................................................................................................GTGTCCAGTGACGTTGATTG.................................................................................................................................	20	1	52.00	52	5	0	0	3	23	21
...................................................................................................................................TGTCCAGTGACGTTGATTGCA...............................................................................................................................	21	1	30.00	30	8	0	0	3	7	12
..................................................................................................................................GTGTCCAGTGACGTTGATTGT................................................................................................................................	21	1	16.00	16	0	0	0	0	12	4
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGTT............................................................................................................................	24	1	15.00	15	2	0	0	5	4	4
..................................................................................................................................GTGTCCAGTGACGTTGATTGCT...............................................................................................................................	22	1	14.00	14	4	0	0	1	3	6
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGT.............................................................................................................................	24	1	11.00	11	0	0	0	0	10	1
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAA..............................................................................................................................	23	1	10.00	10	2	0	0	0	3	5
........................................................................................CATTCGACGCTGCTGGCTTACG.........................................................................................................................................................................	22	1	10.00	10	2	0	0	1	6	1
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGTTT...........................................................................................................................	25	1	9.00	9	1	0	0	0	6	2
......................................................................................AGCATTCGACGCTGCTGGCTTACGTG.......................................................................................................................................................................	26	1	9.00	9	8	0	0	0	0	1
...................................................................................................................................TGTCCAGTGACGTTGATTGC................................................................................................................................	20	1	7.00	7	4	0	0	0	1	2
..................................................................................................................................GTGTCCAGTGACGTTGATT..................................................................................................................................	19	1	7.00	7	0	0	0	1	3	3
........................................................................................CATTCGACGCTGCTGGCTTACGT........................................................................................................................................................................	23	1	7.00	7	2	0	0	1	2	2
........................................................................................CATTCGACGCTGCTGGCTTACGTGG......................................................................................................................................................................	25	1	6.00	6	4	0	0	0	1	1
....................................................................................................................................GTCCAGTGACGTTGATTGCAGT.............................................................................................................................	22	1	5.00	5	0	0	0	0	5	0
..................................................................................................................................GTGTCCAGTGACGTTGATTT.................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0
...................................................................................................................................TGTCCAGTGACGTTGATTG.................................................................................................................................	19	1	3.00	3	1	0	0	0	0	2
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGTT............................................................................................................................	25	1	3.00	3	0	0	0	1	2	0
.........................................................................................ATTCGACGCTGCTGGCTTACG.........................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGTTT...........................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
......................................................................................AGCATTCGACGCTGCTGGCTTAC..........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
......................................................................................AGCATTCGACGCTGCTGGCTTACG.........................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGTTA...........................................................................................................................	25	1	2.00	2	0	0	0	0	1	1
..................................................................................................................................GTGTCCAGTGACGTTGATTGCTT..............................................................................................................................	23	1	2.00	2	0	0	0	0	1	1
........................................................................................CATTCGACGCTGCTGGCTTAC..........................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0
........................................................................................CATTCGACGCTGCTGGCTTA...........................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCG...............................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAC..............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
......................................................................................AGCATTCGACGCTGCTGGCTTA...........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................GCAAGCTCGGCGGCACAGAC.................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGTCT...........................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................AGCATTCGACGCTGCTGGCTTACT.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGA.............................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGC.............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTTT................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................CGTGTCCAGTGACGTTGATTGC................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAT..............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................CGTGTCCAGTGACGTTGATTGCA...............................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGTT...............................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGA................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

A---------------------------------------------------------------------GCTCGGCGGCACAGACAGCATTCGACGCTACTGGCTTACGTTTTG----GTTGA-AATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGACGCGA-AT-GCAGCGA-CTGTTAGGT-----------------------GGAATTTTAT-GGC-----GT--TTATTA---------A-AAATAAATATTCG-----------AGT-	Size	Hit Count	Total Norm	Total
No Reads

droWil2

--------------------------------------------------------------------------GGCAACACAGGCAGCATTCGACGACGCTGGCTTACGTTAAAAACAAACGA-TATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTA----CAA-TGATTAGCGG-CGA----T-----------------------------TTA--------------------------------------------A-----------ATT-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGT.............................................................................................................................	23	1	155.00	155	6	1	137	8	3
...................................................................................................................................TGTCCAGTGACGTTGATTGCAG..............................................................................................................................	22	1	46.00	46	10	0	30	1	5
....................................................................................................................................GTCCAGTGACGTTGATTGCAGT.............................................................................................................................	22	1	29.00	29	1	0	25	1	2
...................................................................................................................................TGTCCAGTGACGTTGATTGCA...............................................................................................................................	21	1	28.00	28	18	1	3	1	5
......................................................................................AGCATTCGACGACGCTGGCTTACG.........................................................................................................................................................................	24	1	24.00	24	5	0	19	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGTT............................................................................................................................	24	1	4.00	4	0	0	4	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGT.............................................................................................................................	24	1	3.00	3	0	0	2	1	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAG..............................................................................................................................	23	1	3.00	3	0	0	1	0	2
......................................................................................AGCATTCGACGACGCTGGCTTA...........................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0
....................................................................................................................................GTCCAGTGACGTTGATTGCAG..............................................................................................................................	21	1	2.00	2	1	0	1	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCG...............................................................................................................................	21	1	2.00	2	2	0	0	0	0
....................................................................................................................................GTCCAGTGACGTTGATTGCA...............................................................................................................................	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGC................................................................................................................................	20	1	1.00	1	0	0	0	0	1
....................................................................................................................................GTCCAGTGACGTTGATTGCAGA.............................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCAGA.............................................................................................................................	24	1	1.00	1	0	0	1	0	0
......................................................................................AGCATTCGACGACGCTGGCT.............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................................................................................................TCCAGTGACGTTGATTGCAGT.............................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................TGTCCAGTGACGTTGATTGCAGG.............................................................................................................................	23	1	1.00	1	1	0	0	0	0
..................................................................................................................................GTGTCCAGTGACGTTGATTGCT...............................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................GTCCAGTGACGTTGATTGCAGTTT...........................................................................................................................	24	1	1.00	1	0	0	1	0	0
......................................................................................AGCATTCGACGACGCTGGC..............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0

dya_124

X:11883759-11883850 -

Known Ortholog

Testes-restricted

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.5	-30.9