dya_1229

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGCAACGTGAATCGACAAGCTTGTGCTGCGTATATGGAGTCTGTATGCTTAGTCTTTATAGCTTTTATAGTTCCTGAGATCTCGACGTTCATACGGACGGACTGTTAAGTTTGCTTGTATGTAAATATGCAGTGATAGAATGTTTTTAATAAACCAATAATCTTGTGAAAATCAATGTTAAATGGTTTTGTTTTTTCCAGTGCGGTTACGCCAATTCCAAGCTTCAGCCATTCATCCGTCGGTCCGCTGG ************************************************..(((((...((((.....))))...))))).....(((((....))))).(((((...((((((......))))))..))))).................((((((.((((.(((.......))).))))..))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V046 embryo	M056 embryo	V052 head	V120 male body
......CGTGAATCGACAAGCTTGTGCTGCGT...........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................TCAGCCATTCATCCGTCGGTCCGC...	24	0	1	1.00	1	1	0	0	0	0
........................................................................................TTCATACGGACGGACTGTTAAGTTTGC........................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
...................GCTCGTTCTGCGTAGATGGAGTCTGT..............................................................................................................................................................................................................	26	3	1	1.00	1	0	1	0	0	0
...........................................................................TGAGATCTCGACGTTCATACGGACG.......................................................................................................................................................	25	0	20	0.50	10	10	0	0	0	0
.............................................................................................................................................................ATAATCTTGTGAAACTCCGT..........................................................................	20	3	7	0.14	1	1	0	0	0	0
...............................................................................................................................................................AATCTTGTGAAACTCCAT..........................................................................	18	2	10	0.10	1	0	0	0	1	0
.......................................................................TTCCTGAGATCTCGACGTTCATA.............................................................................................................................................................	23	0	20	0.10	2	0	0	2	0	0
.................................................................TTATAGTTCCTGAGATCTCGACGT..................................................................................................................................................................	24	0	20	0.05	1	0	0	1	0	0
....................................................................TAGTTCCTGAGATCTCGACGTTCATACG...........................................................................................................................................................	28	0	20	0.05	1	0	0	1	0	0
..................................................................TATAGTTCCTGAGATCTCGACGTTC................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	1

ACCGTTGCACTTAGCTGTTCGAACACGACGCATATACCTCAGACATACGAATCAGAAATATCGAAAATATCAAGGACTCTAGAGCTGCAAGTATGCCTGCCTGACAATTCAAACGAACATACATTTATACGTCACTATCTTACAAAAATTATTTGGTTATTAGAACACTTTTAGTTACAATTTACCAAAACAAAAAAGGTCACGCCAATGCGGTTAAGGTTCGAAGTCGGTAAGTAGGCAGCCAGGCGACC ************************************************..(((((...((((.....))))...))))).....(((((....))))).(((((...((((((......))))))..))))).................((((((.((((.(((.......))).))))..))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	M056 embryo	V120 male body
...........................................................................................................................................TTACAAAAATAATTTGGTAATT..........................................................................................	22	2	1	1.00	1	1	0	0
...........................................................................................................................................TTACAAAAATAATTTGGTAATTT.........................................................................................	23	3	8	0.25	2	1	1	0
...........................................................................................................................................TTACAAAAATAATTTGGTAAT...........................................................................................	21	2	6	0.17	1	1	0	0
.........................................................TTATATAAAATATCAAGGACTCTAGAG.......................................................................................................................................................................	27	3	20	0.05	1	1	0	0
..............CTGTTTGAACACGACGCATATA.......................................................................................................................................................................................................................	22	1	20	0.05	1	0	0	1
........................................................................AGGACTCTAGAGCTGCAAGTATGCCT.........................................................................................................................................................	26	0	20	0.05	1	0	1	0
..........................................................TCTCGAAAATATGAAGGACTC............................................................................................................................................................................	21	2	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droYak3	4:804649-804899 +	dya_1229	TGGCAACGTGAATCGACAAGCTTGTGCTGCGTAT------ATGGAGTCTGTATGCTTAGTCT-----TTATAGCTTTTATAGTTCCTGAGATCTCGACGTTCATACGGACGGACTGTT----AAGTTTGCTTGTATGTAAAT---ATGCAGTGATAGAATGTT-TTTAATAAACCAATAATCTTGTGAAAATCAATGTTAAATGGTTTTGTTTTTTCCAGTGCGGTTACGCCAATTCCAAGCTTCAGCCATTCATCCGTCGG-------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GCTG---G
droEre2	scaffold_4845:386393-386607 +		TGGCAACATTTGGAAACAAACTCGCGCTGCGTCTTTGTAACTTGAAGCTGCATTGTTAATCTTA-----ACAGCTTTTGTAGTTCACGATATGATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTTGGTC--ATTAGAAAA-------------AAC---TGGCAAAAATGCCAAAATCATAGAATATT--------------------------------------------AAAACCGTGACAGTTTT----------GTGAGAC--TTCTTTCATATAAGAAAGGCAATTATATTTTCCAATAC------GCCAATT
droSec2	scaffold_48:213968-214207 -		TGACAACATGGGTCAACAAACTAGCGCTGCGTCTATGTCTCTAGAATCTGTATTCTTAATCTCAACCTTCTAGCTTCTTTAGTTCCTTAAATCGAGACCTCGACTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTAAGAA-AATATTATATTATTATTATTATT------------ATTATTTTTTAAATT---------------------------------------------------------TATAAAAATATCTAATTTTATTTATATGTATTTTATTTATGTA----TTAGTT--TTT--TTTTTTGCTGTTGGTT---------------AT------GCT---A
droSim2	2l:19683718-19683960 +		TGACAACATGGGTCAACAAACTTGCGCTGCGTCTATGTCTCTAGAATCTGTATTCTTAATCTCAGCCTTCTAGCTTCTTTAGTTCCTGAAATCGGGACCTCGACTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTAAGAA-AATATTATATTATTATTATTATT---------------ATTTTTTAAATT---------------------------------------------------------TATAAAAATATCTAATTTTATGTATATGTAATTTATTTATGTATTTATTAGTT--TTTTTTTTTTTGCTGTTGGTT---------------AT------GCC---A
dm3	chr2R:1188367-1188568 +		TGGCAACATCAGAAAA-------------------GGTCTCTGGAATCTGTATTCATAATTTTAACTTCATACCTTTTATAATTCTTGATATCTCGACGTTGGTTCGGCGGACCTGA-------------------------------------------------------------------------------------------------------------------------------------------------TCAAATCGATTCTGCTATAGATACTGATCAATAA-T------------------------------AAATATTCTTTAC-AG----------------------GCC--------CTGAAGAAGATAGTCCTTTTAAATCCTTGAAGAACTATCTCA-------------------------------------CTT------------------------------------GT------TCC---A
droEug1	scf7180000407820:19004-19207 -		TGGCAGGATGCTGAAATAAACTTGCGATGTCCCGGAACATCATGAATCTTCATGGTTAATCTCAACTATGTATCTGCTATAGTTCCTGAGATCTCAGCGTTTATACGGACATGG----------------------------------------------------------------------------------------------------------------------------------------------------CTCAATCTACTTCGATATTGATCCTGATCAAGAA-TATTGTTTATTA---------------------------------------------------------ATT--------TTAA----AATATTTTTTTCAAATT--TATATCTATA--TTA-------------------------------------AGT-----------------------------------------------ATTT
droBia1	scf7180000302087:309745-309952 -		CCT-----AGGTGAAACAAACTTGCGCA-----GGAAGCCCAGGAATCTGCGTGCCATGTCTGACTATTCTAACTTTTATAGTTTCCGAGATCTCTGCGTTTATACGGACTGACGGAC----ATGT----------------------------------------------------------------------------------------------------------------------------------------CTAGGTCGATTCGGCTTGTGATCCTAATAAAAATTT------------GGGCCG--TTATTTTAC---------------AAACCAAACAGAATTGGCAAAAAAATTGAACATTT---------------------------------------TTG-------------------------------------ATT-----------------------------------------------TTTC
droTak1	scf7180000410727:10350-10566 -		TGGCGCTCGGCTAAAATAAACTTGCGCTGCGTAGGAAGCCGAAGAATATGTGTGGGTAATCCCAACTTTCTAGCTTTCGTAGTTTCCGAGATCTTAGCGTTCGTACAGACAACTTGATTGTGAGCTTTAATTTCGGTTGAAAATCACAAAATTATCAAGTTTTCTCTGATGAAAAAAGAAATCTGAG-AATTAAATCTTAAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTAATTTTA-------------------------------------------------------------------------------------------------------------------------------CC
droEle1	scf7180000491347:456723-456923 +		TA-----------------------------------------AAATTTGTATGCCAAGTCCCAAATTTCTACGTTGTATAGTTTCCGAGATCTCGACGTTCATACAGACGGACATG--------T----------------------------------------------------------------------------------------------------------------------------------------CTAGATCGACTTGGCAATTGATGCTGATACAATA-T------------ACCCTT--TTACTCTACGAGT-------------AAC---GGGTATAAACCCGAAAATCGAACAATTTTGA----TCTTATCGTTTCAATGG--CAGCGCCG--------------------------------------------------------------------------TTTTCAA----------AC---TT
droRho1	scf7180000768833:9329-9548 +		TGGCACCTTTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGAATGCAAAATGCCAATCTTCTAGCTTTTATAGTTTCCGAGATCTCAGCGTTCATACGGATAATATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATA--TAGTATGCTA----TA-TAGT-ATGCTATATTAAAAC---------------CAGAATTTCAT--------------------------------------------AATATTGTTCCTATGGGAGCTAT----------ATGA--TATAGTTGTCCGATCAGGC-----------------------TCGTTCCG---A
droFic1	scf7180000453495:181617-181747 -		TGGCAAAACAATTTAACAAACTTGCACTGCGTAAGAATAATAAGTATCTACAGTTTTAATCCCAATATTCTAGTTCCTGCAGTTCCCGAGACCTCGACTTTAATACGGACAGTCGACC----AGACT----------------------------------------------------------------------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GTCT---A
droKik1	scf7180000301795:40236-40296 +		TTCAGATC----------AATTGGACCCGTG-----------------------CCCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAATCATCCCTCTGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCT---------------CTTC---GCTT---G
droAna3	scaffold_13099:648807-648877 -		AAATGCTTTT------------------------TTGTTTCTTAGATCGGTCACTCCAATGTCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAATCATGCGTCGATTGG-------------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CTTA---G
droBip1	scf7180000395161:6143-6246 +		TGGCAATATT----AACAAACTTTAACTGCGTGGGTATTTTAGGAGTCTCTATTTCA------AAAGCTCCATCTCTTATAGTCTCTGAGATCCACGCGTTCATACGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_243:7107-7223 -		GGGCAAAGTTTT--GAAAAATTGTAGCAGTGTCA-TATCACAGAAGTCTGGATACAAAATTTTGTTGCTCTAGCTTTTATAGTCTTTGAGCACTAGTCGTTCATACGGACGGACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---A
droPer2	scaffold_122:78032-78148 -		GGGCAAAGTTTT--GAAAAATTGTAGCAGTGTCA-TATCACAGAAGTCTGGATACAAAATTTTGTTGCTCTAGCTTTTATAGTCTTTGAGCACTAGTCGTTCATACGGACGGACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---A
droWil2	scf2_1100000004558:748537-748663 -		GGGAAGGGGGGTTCGTTGAAATCA-ACTACA----TACAACACGAGTCTATATACCAAAATTGGTGGCTCTAGCTTTTATAGTCTCCGAGATCTAGAAGTTCTTACGGACGGACAGAT----AGACT--------------------------------------------------------------------------------------------------------------------------------------------------TGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA---T
droVir3	scaffold_13052:1530439-1530477 +		CGATACCAAACTTCGGCCATCCAACAGTGGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GTTG---G
droMoj3	scaffold_6680:23575280-23575387 +		CTGTAATGTGGG-CAATAAGCTTTTACTGCGTATGATATACACGAGTATGCATGCCAAATTT-----CTCTAGCTCTTATACCTTCTGAGATCGGTTTGCTCATACGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14822:535748-535779 +		ATGCCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGTCATGCCACCATTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

TGGCAACGTGAATCGACAAGCTTGTGCTGCGTAT------ATGGAGTCTGTATGCTTAGTCT-----TTATAGCTTTTATAGTTCCTGAGATCTCGACGTTCATACGGACGGACTGTT----AAGTTTGCTTGTATGTAAAT---ATGCAGTGATAGAATGTT-TTTAATAAACCAATAATCTTGTGAAAATCAATGTTAAATGGTTTTGTTTTTTCCAGTGCGGTTACGCCAATTCCAAGCTTCAGCCATTCATCCGTCGG-------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GCTG---G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......CGTGAATCGACAAGCTTGTGCTGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCAGCCATTCATCCGTCGG-------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................TTCATACGGACGGACTGTT----AAGTTTGC............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TGAGATCTCGACGTTCATACGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0	0
..................................................................................TTCCTGAGATCTCGACGTTCATA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
............................................................................TTATAGTTCCTGAGATCTCGACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................TAGTTCCTGAGATCTCGACGTTCATACG...................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................TATAGTTCCTGAGATCTCGACGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TGGCAACATTTGGAAACAAACTCGCGCTGCGTCTTTGTAACTTGAAGCTGCATTGTTAATCTTA-----ACAGCTTTTGTAGTTCACGATATGATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTTGGTC--ATTAGAAAA-------------AAC---TGGCAAAAATGCCAAAATCATAGAATATT--------------------------------------------AAAACCGTGACAGTTTT----------GTGAGAC--TTCTTTCATATAAGAAAGGCAATTATATTTTCCAATAC------GCCAATT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

TGACAACATGGGTCAACAAACTAGCGCTGCGTCTATGTCTCTAGAATCTGTATTCTTAATCTCAACCTTCTAGCTTCTTTAGTTCCTTAAATCGAGACCTCGACTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTAAGAA-AATATTATATTATTATTATTATT------------ATTATTTTTTAAATT---------------------------------------------------------TATAAAAATATCTAATTTTATTTATATGTATTTTATTTATGTA----TTAGTT--TTT--TTTTTTGCTGTTGGTT---------------AT------GCT---A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................TGCGTCTATGTCTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0

droSim2

TGACAACATGGGTCAACAAACTTGCGCTGCGTCTATGTCTCTAGAATCTGTATTCTTAATCTCAGCCTTCTAGCTTCTTTAGTTCCTGAAATCGGGACCTCGACTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTAAGAA-AATATTATATTATTATTATTATT---------------ATTTTTTAAATT---------------------------------------------------------TATAAAAATATCTAATTTTATGTATATGTAATTTATTTATGTATTTATTAGTT--TTTTTTTTTTTGCTGTTGGTT---------------AT------GCC---A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................TGCGCTGCGTCTATGTCTCTAGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.65	13	0	0	0	0	0	0	2	3	4	4	0	0	0	0	0	0	0
........TGGGTCAACAAACTTGCGCTGCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	1	0	0	0	4	0	3	0	0	0	0	0	0	0
.........................................TAGAATCTGTATTCTTAATCTCAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	2	0	0	3	1	0	0	0	0	0
.............CAACAAACTTGCGCTGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
...................................TGTCTCTAGAATCTGTATTCTTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.29	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
........TGGGTCAACAAACTTGCGCTGCGTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.25	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTCTAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
....................................................................................................CGACTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTA..........................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTAATCCTGATTAAGA.......................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TT---------------ATTTTTTAAATT---------------------------------------------------------TATA......................................................................................................	18	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTTTTTTTGCTGTTGGTT---------------AT------GCC---.	27	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0
........TGGGTCAACAAACTTGCGCTGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
........TGGGTCAACAAACTTGCGCTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
......................................................................TAGCTTCTTTAGTTCCTGAAATCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................GTCTATGTCTCTAGAATCTGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................TAGAATCTGTATTCTTAATCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................TTGCGCTGCGTCTATGTCTCTAGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	18	0.11	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................TGCGCTGCGTCTATGTCTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................TGCGTCTATGTCTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......ATGGGTCAACAAACTTGCGCTGCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
TGACAACATGGGTCAACAAACTTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........GGGTCAACAAACTTGCGCTGCGTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................TGTCTCTAGAATCTGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................CTTGCGCTGCGTCTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................TGTCTCTAGAATCTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............TCAACAAACTTGCGCTGCGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................TGCGCTGCGTCTATGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTATGTCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTCTAGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............AACAAACTTGCGCTGCGTCTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........TGGGTCAACAAACTTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................AACTTGCGCTGCGTCTATGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............AACAAACTTGCGCTGCGTCTATGTCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................TGCGCTGCGTCTATGTCTCTAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................ACTTGCGCTGCGTCTATGTCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................GCGCTGCGTCTATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................TGCGCTGCGTCTATGTCTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................GTCTATGTCTCTAGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................TTGCGCTGCGTCTATGTCTCTAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................ACTTGCGCTGCGTCTATGTCTCTAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................TGCGTCTATGTCTCTAGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TTGCGCTGCGTCTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTGCGCTGCGTCTATGTCTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....ACATGGGTCAACAAACTTGCGCTGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............TCAACAAACTTGCGCTGCGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...CAACATGGGTCAACAAACTTGCGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............CAACAAACTTGCGCTGCGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

dm3

TGGCAACATCAGAAAA-------------------GGTCTCTGGAATCTGTATTCATAATTTTAACTTCATACCTTTTATAATTCTTGATATCTCGACGTTGGTTCGGCGGACCTGA-------------------------------------------------------------------------------------------------------------------------------------------------TCAAATCGATTCTGCTATAGATACTGATCAATAA-T------------------------------AAATATTCTTTAC-AG----------------------GCC--------CTGAAGAAGATAGTCCTTTTAAATCCTTGAAGAACTATCTCA-------------------------------------CTT------------------------------------GT------TCC---A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGATAGTCCTTTTAAATCCTT.........................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGCTATAGATACTGATCAATA.......................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TATAATTCTTGATATCTCGACGTTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTTAAATCCTTGAAGAACTATCTCA-------------------------------------C.....................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TAC-AG----------------------GCC--------CTGAAGAAGATAGTCCT....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TATAATTCTTGATATCTCGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................ACGTTGGTTCGGCGGACCT...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ATCGATTCTGCTATAGATACT...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATAATTCTTGATATCTCGACGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGAAGAACTATCTCA-------------------------------------CTT------------------------------------GT------TC.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TAGTCCTTTTAAATCCCA.........................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TGGCAGGATGCTGAAATAAACTTGCGATGTCCCGGAACATCATGAATCTTCATGGTTAATCTCAACTATGTATCTGCTATAGTTCCTGAGATCTCAGCGTTTATACGGACATGG----------------------------------------------------------------------------------------------------------------------------------------------------CTCAATCTACTTCGATATTGATCCTGATCAAGAA-TATTGTTTATTA---------------------------------------------------------ATT--------TTAA----AATATTTTTTTCAAATT--TATATCTATA--TTA-------------------------------------AGT-----------------------------------------------ATTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCT-----AGGTGAAACAAACTTGCGCA-----GGAAGCCCAGGAATCTGCGTGCCATGTCTGACTATTCTAACTTTTATAGTTTCCGAGATCTCTGCGTTTATACGGACTGACGGAC----ATGT----------------------------------------------------------------------------------------------------------------------------------------CTAGGTCGATTCGGCTTGTGATCCTAATAAAAATTT------------GGGCCG--TTATTTTAC---------------AAACCAAACAGAATTGGCAAAAAAATTGAACATTT---------------------------------------TTG-------------------------------------ATT-----------------------------------------------TTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGGCGCTCGGCTAAAATAAACTTGCGCTGCGTAGGAAGCCGAAGAATATGTGTGGGTAATCCCAACTTTCTAGCTTTCGTAGTTTCCGAGATCTTAGCGTTCGTACAGACAACTTGATTGTGAGCTTTAATTTCGGTTGAAAATCACAAAATTATCAAGTTTTCTCTGATGAAAAAAGAAATCTGAG-AATTAAATCTTAAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTAATTTTA-------------------------------------------------------------------------------------------------------------------------------CC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TA-----------------------------------------AAATTTGTATGCCAAGTCCCAAATTTCTACGTTGTATAGTTTCCGAGATCTCGACGTTCATACAGACGGACATG--------T----------------------------------------------------------------------------------------------------------------------------------------CTAGATCGACTTGGCAATTGATGCTGATACAATA-T------------ACCCTT--TTACTCTACGAGT-------------AAC---GGGTATAAACCCGAAAATCGAACAATTTTGA----TCTTATCGTTTCAATGG--CAGCGCCG--------------------------------------------------------------------------TTTTCAA----------AC---TT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGCACCTTTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGAATGCAAAATGCCAATCTTCTAGCTTTTATAGTTTCCGAGATCTCAGCGTTCATACGGATAATATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATA--TAGTATGCTA----TA-TAGT-ATGCTATATTAAAAC---------------CAGAATTTCAT--------------------------------------------AATATTGTTCCTATGGGAGCTAT----------ATGA--TATAGTTGTCCGATCAGGC-----------------------TCGTTCCG---A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGCAAAACAATTTAACAAACTTGCACTGCGTAAGAATAATAAGTATCTACAGTTTTAATCCCAATATTCTAGTTCCTGCAGTTCCCGAGACCTCGACTTTAATACGGACAGTCGACC----AGACT----------------------------------------------------------------------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GTCT---A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTCAGATC----------AATTGGACCCGTG-----------------------CCCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAATCATCCCTCTGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCT---------------CTTC---GCTT---G	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAATGCTTTT------------------------TTGTTTCTTAGATCGGTCACTCCAATGTCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAATCATGCGTCGATTGG-------------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CTTA---G	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TGGCAATATT----AACAAACTTTAACTGCGTGGGTATTTTAGGAGTCTCTATTTCA------AAAGCTCCATCTCTTATAGTCTCTGAGATCCACGCGTTCATACGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGGCAAAGTTTT--GAAAAATTGTAGCAGTGTCA-TATCACAGAAGTCTGGATACAAAATTTTGTTGCTCTAGCTTTTATAGTCTTTGAGCACTAGTCGTTCATACGGACGGACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........T--GAAAAATTGTAGCAGTGTCA-T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.....................................TCACAGAAGTCTGGATACAAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.80	8	0	5	0	0	0	0	0	3	0	0
......................................CACAGAAGTCTGGATACAAAATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................TAGTCTTTGAGCACTAGTCGTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................TTATAGTCTTTGAGCACTAGTCGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.......................................ACAGAAGTCTGGATACAAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.43	6	0	0	0	0	0	0	0	6	0	0
............................................................................TTATAGTCTTTGAGCACTAGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.43	3	0	0	0	0	0	0	0	0	3	0
.....................................TCACAGAAGTCTGGATACAAAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..........................................................ATTTTGTTGCTCTAGCTTTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	1	0
............................................................................TTATAGTCTTTGAGCACTAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	1	0	0
..........................................GAAGTCTGGATACAAAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................TCACAGAAGTCTGGATACAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................TATCACAGAAGTCTGGATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TTTTATAGTCTTTGAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

GGGCAAAGTTTT--GAAAAATTGTAGCAGTGTCA-TATCACAGAAGTCTGGATACAAAATTTTGTTGCTCTAGCTTTTATAGTCTTTGAGCACTAGTCGTTCATACGGACGGACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................CACAGAAGTCTGGATACAAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	1	0	0	0	0
......................................CACAGAAGTCTGGATACAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droWil2

GGGAAGGGGGGTTCGTTGAAATCA-ACTACA----TACAACACGAGTCTATATACCAAAATTGGTGGCTCTAGCTTTTATAGTCTCCGAGATCTAGAAGTTCTTACGGACGGACAGAT----AGACT--------------------------------------------------------------------------------------------------------------------------------------------------TGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA---T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................TTTATAGTCTCCGAGATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................TAGCTTTTATAGTCTCCGAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

droVir3

CGATACCAAACTTCGGCCATCCAACAGTGGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---GTTG---G

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

CTGTAATGTGGG-CAATAAGCTTTTACTGCGTATGATATACACGAGTATGCATGCCAAATTT-----CTCTAGCTCTTATACCTTCTGAGATCGGTTTGCTCATACGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................TACACGAGTATGCATGCCAAATTT-----CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.30	3	2	0	0	0	1	0
......................................TACACGAGTATGCATGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

ATGCCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGTCATGCCACCATTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_1229

4:804699-804849 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.0	-24.7	-24.7