ID:

dya_1207

 Coordinate:

4:318365-318515 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5 -10.5 -10.5 -10.5

Flybase annnotation

CDS [Dyak\GE14521-cds]; exon [dyak_GLEANR_14637:1]; intron [Dyak\GE14521-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGTCCTTGTTCCTAGTGCCATGATGCCCCTTTCAGGCGCAGCCAAGGACGGTAAGCACTCAGTTTCAACTGGTAACGGCAAATTCACCTACGCAGAAAAACAATCTGCAGGGCAAATCCTACGCAGCCAGGAGAAATCGAAAACTGCTTCTTCTGCTGAATGGATGAAGAAGGTGGAATGGGAAAGATCCGTTTTGCCAAGCCAGTCAAGCCCAAGTCAAAAAGCGACCTCCACCTAAGAGGGAGCGCTCC
*************************************************************************************************************************************.((..((...((.(((.(((((((..............))))))).)))..)).))..))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V058
head
 GSM1528802
follicle cells		 V052
head
 V120
male body		 SRR1275488
Male larvae
................................................................................................................................................................................GATGGGGAAGCTCCGTTT......................................................... 18 3 20 6.15 123 92 0 25 0 6 0 0
..........................................CAAGGACGGTAAGCACTCAGTTTCAAC...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................GAAGGTGGAATGGGAAAGATCCGTT.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................AGGTGAAAGATCCGTTTTGCC..................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TGCCAAGCCAGTCAAGCCCAAGT.................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................GAAGGTGGAATGGGAAAGATCCGT........................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................AAATCGAAAACTGCTTCTTCTGC............................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
............................................AGGACGGTAAGCACTCAGTTTCAACTGG................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................GGAATCGAAAACTGCTTCTTCTGC............................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................GAAATCGAAAACTGCTTCTTCTGCTG............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAAAGCGACCTCCACCTAAGAGGG........ 26 0 16 0.69 11 4 0 0 7 0 0 0
............................................................GGTTTCAACTGGTAACGG............................................................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................TGCAGGGCAAATCCTACGCAGCCAGGA....................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAAAGCGACCTCCACCTAAGAGG......... 25 0 19 0.21 4 4 0 0 0 0 0 0
.............................................................GTTTCAACTGGTAACGGGGA.......................................................................................................................................................................... 20 2 20 0.20 4 4 0 0 0 0 0 0
................................................................TCAACGGGTAACGGGAAATA....................................................................................................................................................................... 20 3 20 0.15 3 3 0 0 0 0 0 0
.............................................................GTTTCAACTGGTAACGGGGAATA....................................................................................................................................................................... 23 3 20 0.15 3 3 0 0 0 0 0 0
.............................................................GTTTCAACTGGTAACGGGGAAT........................................................................................................................................................................ 22 2 20 0.15 3 2 0 1 0 0 0 0
..................................................................AACGGGTAACGGCAGATT....................................................................................................................................................................... 18 2 7 0.14 1 0 0 1 0 0 0 0
...............................................................TTCAACGGGTAACGGCGAAT........................................................................................................................................................................ 20 2 19 0.11 2 2 0 0 0 0 0 0
................................................................TCAACTGGTAACGGGGAAT........................................................................................................................................................................ 19 2 20 0.10 2 2 0 0 0 0 0 0
.................................................................CAACGGGTAACGACAAAT........................................................................................................................................................................ 18 2 10 0.10 1 0 0 1 0 0 0 0
.................................................................................................................................................................................ATGGGGAAGATCCGT........................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................CAAAAAGCGACCTCCACCTAAGAGGGAG...... 28 0 15 0.07 1 1 0 0 0 0 0 0
................................................................TCAACGGGTAACGGCGAAT........................................................................................................................................................................ 19 2 19 0.05 1 1 0 0 0 0 0 0
..............................................................TTTCAACGGGTAACGGGAAAT........................................................................................................................................................................ 21 2 19 0.05 1 0 0 0 0 0 0 1
.............................................................GTTTCAACGGGCAACGGCGAAT........................................................................................................................................................................ 22 3 19 0.05 1 0 0 1 0 0 0 0
...............................................................TTCAACGGGTAACGGGAAAT........................................................................................................................................................................ 20 2 19 0.05 1 0 0 0 0 0 1 0
.............................................................GTTTCAACGGGTAACGGCGAATA....................................................................................................................................................................... 23 3 19 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................................................CTGAATGGATGAAGAAGGT............................................................................. 19 0 19 0.05 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................CAAAAAGCGACCTCCACCTAA............. 21 0 20 0.05 1 0 0 0 0 0 1 0
.............................................................GTTTCAACGGGTAACGGGA........................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................TTCAACGGGTAACGGGAA.......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0
.............................................................GGTTCAACTGGTAACGGGGAAT........................................................................................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAAAGCGACCTCCACCTAAGA........... 23 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................TTCAACGGGTAACGGCGAAC........................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AAAAGCGACCTCCACCTAAGA........... 21 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................TTTCAACTGGTAACGGGGAAT........................................................................................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0 0
............................................................AGTTTCAACGGGTAACGGG............................................................................................................................................................................ 19 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................CAGTTGCAACGGGTAACG.............................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

GCAGGAACAAGGATCACGGTACTACGGGGAAAGTCCGCGTCGGTTCCTGCCATTCGTGAGTCAAAGTTGACCATTGCCGTTTAAGTGGATGCGTCTTTTTGTTAGACGTCCCGTTTAGGATGCGTCGGTCCTCTTTAGCTTTTGACGAAGAAGACGACTTACCTACTTCTTCCACCTTACCCTTTCTAGGCAAAACGGTTCGGTCAGTTCGGGTTCAGTTTTTCGCTGGAGGTGGATTCTCCCTCGCGAGG
**********************************************************.((..((...((.(((.(((((((..............))))))).)))..)).))..))************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V046
embryo
 V058
head
...........................................................................................................................GTCGGTCCTCTTTAGCTTTTGACGAAG..................................................................................................... 27 0 1 27.00 27 1 26 0 0 0 0
.........................................................GAGTCAAAGTTGACCATTGCCGTTTAA....................................................................................................................................................................... 27 0 1 22.00 22 0 22 0 0 0 0
...........................................................................................................................................................................................................TCAGTTCGGGTTCAGTTTTTCGCT........................ 24 0 1 14.00 14 8 0 6 0 0 0
....................................................................................................................AGGATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 26 0 2 8.00 16 1 15 0 0 0 0
..........................................................................................................................................................................................................GTCAGTTCGGGTTCAGTTTTTCGCT........................ 25 0 1 6.00 6 6 0 0 0 0 0
..................................CCGCGTCGGTTCCTGCCATTCGTGAGT.............................................................................................................................................................................................. 27 0 1 6.00 6 6 0 0 0 0 0
...........................GGAAAGTCCGCGTCGGTTCCTGCCAT...................................................................................................................................................................................................... 26 0 1 5.00 5 1 2 2 0 0 0
...............................AGTCCGCGTCGGTTCCTGCCATTCGT.................................................................................................................................................................................................. 26 0 1 5.00 5 5 0 0 0 0 0
....................................................................................................................AGGATGCGTCGGTCCTCTTTAGCTT.............................................................................................................. 25 0 3 4.33 13 0 13 0 0 0 0
.....................................................................................................................GGATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 25 0 2 4.00 8 4 4 0 0 0 0
............................................................................................................................................................................................................CAGTTCGGGTTCAGTTTTTCGCT........................ 23 0 1 4.00 4 2 0 2 0 0 0
.........................................................................................................................................................................................................GGTCAGTTCGGGTTCAGTTTTTCGCT........................ 26 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................................GCGTCGGTCCTCTTTAGCTTTTGA.......................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
..............................AAGTCCGCGTCGGTTCCTGCCATTCG................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
............................................................TCAAAGTTGACCATTGCCGTTTAA....................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................CCACCTTACCCTTTCTAGGCAAAACGGT.................................................... 28 0 1 2.00 2 2 0 0 0 0 0
................................................GCCATTCGTGAGTCAAAGTTGACCAT................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................TAGACGTCCCGTTTAGGATGCGTC............................................................................................................................. 24 0 4 1.75 7 0 7 0 0 0 0
..................................................................................................................TTAGGATGCGTCGGTCCTCTTTAGCTT.............................................................................................................. 27 0 3 1.67 5 2 3 0 0 0 0
......................................................................................................................GATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 24 0 2 1.50 3 3 0 0 0 0 0
.......................................................................................................................................................AGACGACTTACCTACTTCTTCCACCTT......................................................................... 27 0 4 1.25 5 5 0 0 0 0 0
..........................GGGAAAGTCCGCGTCGGTTCCTGCCAT...................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TTTGTTAGACGTCCCGTTTAGGAT.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................GAGTCAAAGTTGAGCATTGCCGTTTAA....................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................TCGGGTTCAGTTTTTCGCTGGAGGT.................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................CAAAACGGTTCGGTCAGT........................................... 18 0 1 1.00 1 1 0 0 0 0 0
.........................................................GAGTCAAAGTTGACCATTGCCG............................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TGCGTCGGTCCTCTTTAGCTTTTGA.......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................GGTTCGGTCAGTTCGGGTTCAGTT............................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................TCGTGAGTCAAAGTTGACGATTGCCGT........................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CCTCTTTAGCTTTTGGCGAAGAAG.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GGTCAGTTCGGGTTCAGTTTTTCGC......................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................................CGTGAGTCAAAGTTGACCATTGCCGT........................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................ACCTACTTCTTCCACCTTACCCTTTCT................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
........AAGGATCACGGTACTACGGGGAAAGT......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................CGGTCCTCTTTAGCTTTTGACGAAG..................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................................TACCCTTTCTAGGCAAAACGGTTCGGTCA............................................. 29 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................TTCAGTTTTTCGCTGGAGGTGGAT.............. 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................GAGTCAAAGTTGACCATTGCCGT........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GGTTCAGTTTTTCGCTGGAGGTGGAT.............. 26 0 1 1.00 1 0 0 0 1 0 0
...........................................TTCCTGCCATTCGTGAGTCAAAGT........................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................CGGTCCTCTTTAGCTTTTGACGAAGAAG.................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................AAAATTTGACGAAGAAGACGACTTACCT....................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................GCGTCTTTTTGTTAGACGTCCCGT......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................GTTAGACGTCCCGTTTAGGATGCGT.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................CAGTTCGGGTTCAGTTTTTCGCG........................ 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................GAGTCAAAGTTGACCATTGCCGTT.......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TTGACGAAGAAGACGACTTACCTACTT................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................CGGTTCCTGCCATTCGTGAGTCAAA.......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
.................................................................GTTGACCATTGCCGTTTAA....................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TCAGTTCGGGTTCAGTTTGTCGCT........................ 24 1 1 1.00 1 0 0 1 0 0 0
.....................................................TCGTGAGTCAAAGTTGACCATTGCCGT........................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GACAGTTCGGGTTCAGTTTTTCGCT........................ 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................CTTACCTACTTCTTCCACCTTACCCT.................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................CGAAGAAGACGACTTACCTACTTCTT................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................AGGCAAAACGGTTCGGTCAGTTCGGGT..................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................AGTCAAAGTTGACCATTGCCGTTTAA....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................TTCTAGGCAAAACGGTTCGGTCAGT........................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCGGTCAGTTCGGGTTCAGTGT.............................. 22 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................CGGTCCTCTTTAGCTTTTGACG........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..........GGATCACGGTACTACGGGGAAAGT......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AGTTCGGGTTCAGTTTTTCGCT........................ 22 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................GGTCAGTTCGGGTTCAGTTTTTC........................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TCAGTTCGGGTTCAGTTTTTCGGT........................ 24 1 1 1.00 1 0 0 1 0 0 0
............................................................................................................................TCGGTCCTCTTTAGCTTTTGACGAAG..................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AGTTCGGGTTCAGATTTTCGCT........................ 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................CCACCTTACCCTTTCTAGGCAAAACGGTT................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...................................CGCGTCGGTTCCTGCCATTCGTGAGT.............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.............................AAAGTCCGCGTCGGTTCCTGCCAT...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TCGGTCAGTTCGGGTTCAGTTTT............................. 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................GTCGGTCCTCTTTAGCTTTGGACGAAG..................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
............................................................TCAAAGTTGACCATTTCCGTTTAA....................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................GACGACTTACCTACTTCTTCCACCTT......................................................................... 26 0 5 0.80 4 4 0 0 0 0 0
.........................................................................................................................................................ACGACTTACCTACTTCTTCCACCTT......................................................................... 25 0 5 0.60 3 3 0 0 0 0 0
.......................................................................................................................................................AGACGACTTACCTACTTCTTCCACCT.......................................................................... 26 0 4 0.50 2 2 0 0 0 0 0
..................................................................................................................TTAGGATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 28 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................ATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGGATGCGTCGGGCCTCTTTAGCTTT............................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0
.....................CTACGGGGAAAGTCCGCGTCGGTTCCT........................................................................................................................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................GCGTCGGTCCTCTTTAGCTTT............................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
...........................GGAAAGTCCGCGTCGGTTCCTGCCATCT.................................................................................................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGGATGCGTCGGTCCTCTTTAGCTTT............................................................................................................. 27 0 2 0.50 1 0 0 0 1 0 0
......................................GTCGGTTCCTGCCATTCGTGAGT.............................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TTAGGATGCGTCGGTCCTCGTTAGCTT.............................................................................................................. 27 1 3 0.33 1 0 1 0 0 0 0
....................................GCGTCGGTTCCTGCCATTCGTGAGT.............................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
......................................GTCGGTTCCTGCCATTCGTGAGTCA............................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................AGGATGCGTCGGTCCTCTTTAGCTTG............................................................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................................AGGATGCGTCGGTCCTCTTTAGCT............................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
.............................AAAGTCCGCGTCGGTTCCTGCCTT...................................................................................................................................................................................................... 24 1 3 0.33 1 0 0 1 0 0 0
......................................................................................................TAGACGTCCCGTTTAGGATGCGTCGGT.......................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0
.............................................................................................................CCCGTTTAGGATGCGTCGGTCCTCTT.................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0
...............................................................................TTTAAGTGGATGGGTGTT.......................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0
.............................................................................................................CCCGTTTAGGATGCGTCGGTCCTCTTT................................................................................................................... 27 0 4 0.25 1 0 0 1 0 0 0
..........................................................................................................................................................CGACTTACCTACTTCTTCCACCTT......................................................................... 24 0 16 0.25 4 3 0 1 0 0 0
.........................................................................................................ACGTCCCGTTTAGGATGCGTCGGT.......................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0
......................................................................................................TAGACGTCCCGTTTAGGATGCGACGGT.......................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0
.........................................................................................................AAGTCCCGTTTAGGATGCGACGGT.......................................................................................................................... 24 2 5 0.20 1 0 1 0 0 0 0
.........................................................................................................................................................ACGACTTACCTACTTCTTCCACCTTA........................................................................ 26 0 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................CAGTTTTTCGCTGGAGGTGGATTCT........... 25 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................................CGACTTACCTACTTCTTCCACCTTAC....................................................................... 26 0 16 0.06 1 1 0 0 0 0 0
..........................................................................................................................................................CGACTTACCTACTTCCTACACCTTAC....................................................................... 26 2 16 0.06 1 0 0 0 0 1 0
..........................................................................................................................................................CGACTTACCTACTTCTTCCACCT.......................................................................... 23 0 16 0.06 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTCGCTGGAGGTGGATTCTCCCT....... 25 0 17 0.06 1 1 0 0 0 0 0
...............................AGTCCGCGTCGGTTCCTG.......................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................CGACTTACCTACTTCTTC............................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
.........GGGATCACGGTACTACGGGGAAAGT......................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
............AGCTCGGTACTAAGGGGAAA........................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................................................TGTTTTTCGCTGGAGGTGGATTCT........... 24 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................................................................AGTTTTTCGCTGGAGGTGGATTCT........... 24 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 4:318315-318565 - dya_1207 C-GTC---------C------TTGTTCCTAGTGCCATGATGCCCCTTTCAGGCGCAGCCAAG---------------------GACGGT------AAGCACTCAGTTTCA---ACTG---GTAACGGCAAATTCACCTACGCAGAAAAACAATCTGCAGGGCAAATCCTACGCAGCCA--GGA-----GAAATCGAAAACTGCTTCTTCTGCTGAAT-GGATGAAGAAGGTGGAATGGGAAAGATCCGTTTTGCCAAGC-------CAGTCAA-GCCC-----------AAGTCA--AAAAGCGACCTCCA---------CCTAAGAGGGAGCGCTCC
droEre2 scaffold_4929:26243929-26244061 + C-GTG---------G---------------------------------------AGGTGGTG-------TTGCTGGTGCTTATTC------AGATTAGTAAAGGCCTACA---AGCGGTCAGT------------------------------GCAGCGGCAATACACTAC---------------------------------------------------------------ATTGGAAAATATTGTGT--CCAGC--------------------------------------------ATTCCGCAGCTGTGAGCAGTGACACTGCTGCAT-TT
droSec2 scaffold_42:193867-193869 + C-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:23394910-23394912 + C-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000297633:13923-14052 - G-C-----------------------------------------------------------------------------------------------------------------------------AAACATACCTACGCGGAAAGGCGGACTGCAGCCCAGACTCTGCGCTC--------------------------------------ACAT-GGCTGAAGAAGGTAGAATGGGCAAGAACGGTGTTTCCT---TCCGCC---------------------------C----AAGAAGGTACTCAG---------GCGAAACGGCAGCGTCCC
droTak1 scf7180000412464:11044-11264 + CAGAC------------------------------------------------GCAGCAAAG----------------------TCGATCGG--------------GTCACCCGCTG---GTGTCACGAAATTCACATACGCAGAGAGACGGATGGCCGCCCAAACCCTGCGCTCACA--TGCCAGAAGCAAA--GTCGCCACGCCTTCGCCCGAAT-GGCTGAAGAAGGTAGAGTGGGCCAGGACGGTGTTCCCAAACTATGGGCAAGGAAACACCC------------AAC----AGGAAGGTGCCCAG---------GTGAAGAGGCAACGCTCC
droEle1 scf7180000488772:3064-3283 - A-GGT------------------------------------------------GCAGCTAAG----------------------ACTGTCGC--------------TCCATTCACCG---AGCAAAGGAAATTTACCTATGCGGAGAAGCAGACTGCCGCGCAGACACTCCGCTCACA--AAACAGGAGTAAG--ATCGACAACCCCTCAGCCGAAT-GGTTCAAGAAGGTTGAGTGGGCGTGAAAGGTGCTCCCAAATTATGGCCAAGAGAG-GCCT-----------AGTG----CAGAGAACGCACAG---------CCTAAGAGGCAGCGATCT
droRho1 scf7180000757807:12-231 + A-GGC------------------------------------------------GCAGCAAAG----------------------TCGATCGG--------------GTCACCCGCTG---GTGTAAAGAAGTTCACATACGCAGAGAGACGGACTGCCGCACAAACCCTGCGCTCGCA--TGCCAGAAGAAAT--GTCGCCACGCCTTCGCCCGAAT-GGCTAAAGAAGGTAGAGTGGGCAAGGACGGTGTTTCCTAACTATGGGCAAGAGAA-GCCC-----------CAGC----AAGAAGGTGCTCAG---------GCGAAGAGGCAACGCTCC
droAna3 scaffold_13111:85068-85330 - G-GCG---------GCATCTCCTGGCCCAAGTGGCATGATGCCCCCTTCAGGAGCGAGAAAGGATAGCGCCCGCGGCGGCTAGCA------AAC--------------------TTG---GCCAAAGAAAGTTCACATACGCTGAAGGAGCAACCGTAGGGCAGATTCTGCAAAGCCA--CGAGGTC---------------------C---GAAACTTCTGCAGAAAGGTGGAATGAGCTAAAAATGTTCTTCCAGAGTACAGCATGACACC-AAAACAGACAGCTCCGAAACACAAACCAAAACTACAT---------CCTAAAAGGGAGCGATCA
droBip1 scf7180000396438:7098-7302 - C-CT-------------------GGCCTAAGCGCCATGATAGCACCTTCAGGTGTGGCTAAA----------------------T--------------AGCTAGCGATA----GCG----CGAAAGGAAATTTACATACGTGGAGAAGAGCACCGCAGGGCAAAATCATT----ACA--AGCGATGAGTGAG-----CTAAGACGACCAA--GAGT-TTCGCAAAAAGGTAGAATGGGAGGAAAGTGTGC--CCAAG--------------------------------------------GGACCGCAG---------CGCAAGCGGGAGCGCTCC
dp5 Unknown_group_67:35973-36222 - T-CCTGCGGCTGCTATGCCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATGAGTCACCATCTACT---AGTGTCAAAGCCAAATCCTTTACATATGCCGACAGAAGGAGTGCTGGCAACATACTCCGTCGGCA--GAACGCAAGCCAG--ATGTCCAGCCCGACGGACAAAT-GGATTAAGAAGGTCGAGTGGGCCTCGAAGGTGCTGCCGAACTTTGGCAAGGAAGC-ACCG-----------AAGA----AGGAAGCCCCTCAG---------CAAAAAAGGCAGCGCTCG
droPer2 scaffold_2:371227-371463 - T-GCC---------CGACCTT---------------------------CTGGTGTAGCAGAG---------------------GG------GGATGACTTGCCGTCGACA---AGCGCTCAAGCCAAACGCTACACCTATGCCGAAAAAAGGAGTTCAGGGAACATACTCCGTCGGCACTCGCCAGAAGCGAA-----GCCAGCCCATCAGCCGACT-GGCTGAAGAAGGTGGAATGGGCTTCGACTATGCTCCCGGAGTTCACCTTAGAACA-GA--------------AAA----AGGTGGCTCCGCAA---------GCTAAGAGGCAGCGCTCG
droVir3 scaffold_13047:17379735-17379919 + C-GGC-----------------------------------------------------------------------------------------------------------------------AAAGATATGTACATATTGGGAGAAAAAGAGCGCAGAGCATATCCTTCTTTGGCA--GAACGCGTGCAGA--ACGGCCAATCAATCAGCAGACT-GGCTGAAAAAAATTAAATGGGCCCGGAGTGTGCACCAAAGCTTCAGCGAAAAACC-ATCA-----------AGC-------ACGCAGAGGCAA---------TTAAAGAGGAAGCGTTCC
droMoj3 scaffold_6500:17456765-17456864 + A-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCCATCGGCTGCCT-GGCTGAAGAAACTTGAATGGGCGAATACGGTGTTTCCGAATTTTGGGCAGCAA-------------------------------GTCCAGAGG---------ACTAAGCGACAGCATTCA
droGri2 scaffold_15203:478811-479003 + A-ACT---------------------------------------------------------------------------------------------------------------T---GTGATAAAAGGTTCAGCTATGCCGACCGCAGAAATGCCGCAAGCATTCTGAAGCGGCA--AAACGCGAACATA--CAGCCAAATCCACCAGCCGAAT-GGCTAAACAAAGTGGTGTGGGCTAGGAAGGTGTTGCCAAACTTCTGTGAGGCTCC-ACCC-----------CATA----AAGAGCAAAGCCAG---------GCAAAAAGGCAGCGCTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
C-GTC---------C------TTGTTCCTAGTGCCATGATGCCCCTTTCAGGCGCAGCCAAG---------------------GACGGT------AAGCACTCAGTTTCA---ACTG---GTAACGGCAAATTCACCTACGCAGAAAAACAATCTGCAGGGCAAATCCTACGCAGCCA--GGA-----GAAATCGAAAACTGCTTCTTCTGCTGAAT-GGATGAAGAAGGTGGAATGGGAAAGATCCGTTTTGCCAAGC-------CAGTCAA-GCCC-----------AAGTCA--AAAAGCGACCTCCA---------CCTAAGAGGGAGCGCTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................CAAG---------------------GACGGT------AAGCACTCAGTTTCA---AC...............................................................................................................................................................................................................................2711.00101000000000
.................................................................................................................................................................................................................................GAAGGTGGAATGGGAAAGATCCGTT........................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................................TGCCAAGC-------CAGTCAA-GCCC-----------AAGT.............................................2311.00101000000000
.................................................................................................................................................................................................................................GAAGGTGGAATGGGAAAGATCCGT.........................................................................................2411.00101000000000
.............................................................................................................................................................................................AAATCGAAAACTGCTTCTTCTGC..............................................................................................................................2311.00101000000000
............................................................AG---------------------GACGGT------AAGCACTCAGTTTCA---ACTG---G.........................................................................................................................................................................................................................2811.00101000000000
............................................................................................................................................................................................GAAATCGAAAACTGCTTCTTCTGCTG............................................................................................................................2611.00101000000000
.....................................................................................................................................................................................................................................................................................................CA--AAAAGCGACCTCCA---------CCTAAGAGGG........26160.691104000000007
..........................................................................................................................................................TGCAGGGCAAATCCTACGCAGCCA--GGA-----......................................................................................................................................................2740.25101000000000
.....................................................................................................................................................................................................................................................................................................CA--AAAAGCGACCTCCA---------CCTAAGAGG.........25190.21404000000000
.....................................................................................................................................................................................................................................................................................................CA--AAAAGCGACCTCCA---------CCTAAGAGGGAG......28150.07101000000000
...................................................................................................................................................................................................................CTGAAT-GGATGAAGAAGGT...........................................................................................................19190.05100000010000
.....................................................................................................................................................................................................................................................................................................CA--AAAAGCGACCTCCA---------CCTAA.............21200.05100000010000
.....................................................................................................................................................................................................................................................................................................CA--AAAAGCGACCTCCA---------CCTAAGA...........23200.05101000000000
.........................................................................................................................................................................................................................................................................................................AAAAGCGACCTCCA---------CCTAAGA...........21200.05101000000000
droEre2
C-GTG---------G---------------------------------------AGGTGGTG-------TTGCTGGTGCTTATTC------AGATTAGTAAAGGCCTACA---AGCGGTCAGT------------------------------GCAGCGGCAATACACTAC---------------------------------------------------------------ATTGGAAAATATTGTGT--CCAGC--------------------------------------------ATTCCGCAGCTGTGAGCAGTGACACTGCTGCAT-TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
C-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
C-GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droBia1
G-C-----------------------------------------------------------------------------------------------------------------------------AAACATACCTACGCGGAAAGGCGGACTGCAGCCCAGACTCTGCGCTC--------------------------------------ACAT-GGCTGAAGAAGGTAGAATGGGCAAGAACGGTGTTTCCT---TCCGCC---------------------------C----AAGAAGGTACTCAG---------GCGAAACGGCAGCGTCCCSizeHit CountTotal NormTotal
No Reads
droTak1
CAGAC------------------------------------------------GCAGCAAAG----------------------TCGATCGG--------------GTCACCCGCTG---GTGTCACGAAATTCACATACGCAGAGAGACGGATGGCCGCCCAAACCCTGCGCTCACA--TGCCAGAAGCAAA--GTCGCCACGCCTTCGCCCGAAT-GGCTGAAGAAGGTAGAGTGGGCCAGGACGGTGTTCCCAAACTATGGGCAAGGAAACACCC------------AAC----AGGAAGGTGCCCAG---------GTGAAGAGGCAACGCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
A-GGT------------------------------------------------GCAGCTAAG----------------------ACTGTCGC--------------TCCATTCACCG---AGCAAAGGAAATTTACCTATGCGGAGAAGCAGACTGCCGCGCAGACACTCCGCTCACA--AAACAGGAGTAAG--ATCGACAACCCCTCAGCCGAAT-GGTTCAAGAAGGTTGAGTGGGCGTGAAAGGTGCTCCCAAATTATGGCCAAGAGAG-GCCT-----------AGTG----CAGAGAACGCACAG---------CCTAAGAGGCAGCGATCTSizeHit CountTotal NormTotal
No Reads
droRho1
A-GGC------------------------------------------------GCAGCAAAG----------------------TCGATCGG--------------GTCACCCGCTG---GTGTAAAGAAGTTCACATACGCAGAGAGACGGACTGCCGCACAAACCCTGCGCTCGCA--TGCCAGAAGAAAT--GTCGCCACGCCTTCGCCCGAAT-GGCTAAAGAAGGTAGAGTGGGCAAGGACGGTGTTTCCTAACTATGGGCAAGAGAA-GCCC-----------CAGC----AAGAAGGTGCTCAG---------GCGAAGAGGCAACGCTCCSizeHit CountTotal NormTotal
No Reads
droAna3
G-GCG---------GCATCTCCTGGCCCAAGTGGCATGATGCCCCCTTCAGGAGCGAGAAAGGATAGCGCCCGCGGCGGCTAGCA------AAC--------------------TTG---GCCAAAGAAAGTTCACATACGCTGAAGGAGCAACCGTAGGGCAGATTCTGCAAAGCCA--CGAGGTC---------------------C---GAAACTTCTGCAGAAAGGTGGAATGAGCTAAAAATGTTCTTCCAGAGTACAGCATGACACC-AAAACAGACAGCTCCGAAACACAAACCAAAACTACAT---------CCTAAAAGGGAGCGATCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
C-CT-------------------GGCCTAAGCGCCATGATAGCACCTTCAGGTGTGGCTAAA----------------------T--------------AGCTAGCGATA----GCG----CGAAAGGAAATTTACATACGTGGAGAAGAGCACCGCAGGGCAAAATCATT----ACA--AGCGATGAGTGAG-----CTAAGACGACCAA--GAGT-TTCGCAAAAAGGTAGAATGGGAGGAAAGTGTGC--CCAAG--------------------------------------------GGACCGCAG---------CGCAAGCGGGAGCGCTCCSizeHit CountTotal NormTotal
No Reads
dp5
T-CCTGCGGCTGCTATGCCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATGAGTCACCATCTACT---AGTGTCAAAGCCAAATCCTTTACATATGCCGACAGAAGGAGTGCTGGCAACATACTCCGTCGGCA--GAACGCAAGCCAG--ATGTCCAGCCCGACGGACAAAT-GGATTAAGAAGGTCGAGTGGGCCTCGAAGGTGCTGCCGAACTTTGGCAAGGAAGC-ACCG-----------AAGA----AGGAAGCCCCTCAG---------CAAAAAAGGCAGCGCTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................2320319.256385102911206483115014
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................2720130.8526173561020623621852
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCAG--...............................................................................................................................................262039.757950000000718770
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCC...................................................................................................................................................242032.40648010900000491462
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................242015.1530302520000222540
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCA..................................................................................................................................................252014.752951010100274180
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACTTTGG..........................................................................232013.15263026300000000
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGAAGGT...........................................................................................................24610.6764010000021420
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................262010.0020001700000141420
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAG.....................................................................................................................................................22207.10142000020201371
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCAG--AA.............................................................................................................................................28206.25125010000012400
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAA......................................................................................................................................................21206.15123000000012300
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------G......................................................................................................................................................................................................................................................2136.001801700001000
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGA...............................................................................................................2355.802902310000230
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGAA..............................................................................................................2455.602802710000000
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGAAG.............................................................................................................2554.602301000000940
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................28204.308600000008600
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................26204.1583010000007300
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGAAG.............................................................................................................2464.002401300000740
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................24204.0080011000066120
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACTTTG...........................................................................22203.907807800000000
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACTTTGGC.........................................................................24203.907807800000000
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCAG--AT.............................................................................................................................................28203.607203000006090
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GAACG.........................................................................................................................................................2673.292305000016110
.............................................................................................................................................................................................................CGACGGACAAAT-GGATTAAGAAGGT...........................................................................................................2563.171900000005140
....................................................................................................................................................................................................................CAAAT-GGATTAAGAAGGTCGAGT......................................................................................................2343.00120100000920
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGAAGG............................................................................................................2653.00150900000510
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGA....................................................................................................................................................................................................................................................2332.6780800000000
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGAAGG............................................................................................................2362.671602000003110
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCA...................................................................................................................................................24202.555105000004510
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GAAC..........................................................................................................................................................2572.43170620000630
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAG................................................................................................................2252.401201100000010
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCA.......................................................................................................................................................20202.3547000000033140
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GG.....................................................................................................................................................................................................................................................2232.3370700000000
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................22202.104204100000001
........................................................................................................................................................AGTGCTGGCAACATACTCCGTCG...................................................................................................................................................................2382.001601600000000
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGTCGAG.......................................................................................................2442.0080300000410
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGC........................................................................................................................................................19201.753506001002800
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGAAG.............................................................................................................2261.67100100000090
...................................................................................................................................................................CATACTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................2561.67100000001180
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--ATGTC..........................................................................................................................................28201.603201000002650
...........................................................................................................ACT---AGTGTCAAAGCCAAATCCTTT............................................................................................................................................................................................................2441.5060400001100
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGAAGGT...........................................................................................................2661.5090300000150
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGTCGA........................................................................................................2341.5060400000200
....................................................................................................................................................................................................................CAAAT-GGATTAAGAAGGTCGAGTGG....................................................................................................2541.5060100000500
........................................................................................................................................................AGTGCTGGCAACATACTCCGTCGG..................................................................................................................................................................2481.501201100001000
........................................................................................................................................................................................................................T-GGATTAAGAAGGTCGAGTGGGC..................................................................................................2341.5060000000240
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGAAGGT...........................................................................................................2751.4070600000010
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGAAGG............................................................................................................2561.3380400000310
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGCAA......................................................................................................................................................22201.302600000012500
...............................................................................................................................................................................GCA--GAACGCAAGCCAG--ATGTC..........................................................................................................................................21201.302608000001440
...............................................................................................................................................................................GCA--GAACGCAAGCCAG--ATGTCC.........................................................................................................................................22201.302603200001740
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCCTCGAAG...........................................................................................2541.2550000000050
.............................................................................................................................................................................................................................................................................AAGC-ACCG-----------AAGA----AGGAAGCCC................................21201.252502410000000
.............................................................................................................T---AGTGTCAAAGCCAAATCCTTT............................................................................................................................................................................................................2241.2550500000000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTGGG...................................................................................................2541.2550100000040
...........................................................................................................ACT---AGTGTCAAAGCCAAATCCT..............................................................................................................................................................................................................2241.2550320000000
..................................................................................................................................................................ACATACTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................2661.1770000000070
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCAG---------..................23201.152301901102000
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGCCAG--...............................................................................................................................................25201.102206000001510
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCAG---------C.................24181.061901800001000
...................................................................................................................................................................................................................................................GAAGGTGCTGCCGAACTTTGG..........................................................................21201.052102100000000
.............................................................................................................................................................................CGGCA--GAACGCAAGCCAG--ATGTC..........................................................................................................................................23201.052100000001470
..............................................................................................................................................................................................CAG--ATGTCCAGCCCGACGGAC.............................................................................................................................21181.001801800000000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTGG....................................................................................................2441.0040300000100
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GA............................................................................................................................................................2371.0070600000010
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGCC...................................................................................................................................................23201.002007000001210
....TGCGGCTGCTATGCCTG---------------------------CTGGTAAAGT........................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GAACGCAA......................................................................................................................................................2961.0060210000030
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------G..............................................................................................................................................................................................................................................................1931.0030300000000
............................................................................................................................................................................................................................................................................GAAGC-ACCG-----------AAGA----AGGAAGCCCC...............................23200.901801800000000
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGCAAG.....................................................................................................................................................23200.901801800000000
............................................................................................................................................................................TCGGCA--GAACGCAAGCCAG--ATGTCCA........................................................................................................................................26200.851700000001700
............................................................................................................................................................................TCGGCA--GAACGCAAGCCAG--ATGTCCAG.......................................................................................................................................27200.851700000001700
.............................................................................................................................................................................................................CGACGGACAAAT-GGATTAAGAAGG............................................................................................................2460.8350200000120
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGA...............................................................................................................2260.8350500000000
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTC.............................21200.801601410001000
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCA............................22200.801601600000000
......................................................................................................................................................................................................TCCAGCCCGACGGACAAAT-GGATTAAG................................................................................................................2750.8040300000010
.........................................................................................................................................................................................CAAGCCAG--ATGTCCAGCCCGA..................................................................................................................................21170.761301300000000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTGGGC..................................................................................................2640.7530100000020
................................................................................................................................................................................................................CGGACAAAT-GGATTAAGAAGGTC..........................................................................................................2340.7530100000020
.......................................................................................................................................................................CTCCGTCGGCA--GAACGCAAGC....................................................................................................................................................21200.751501300100010
......................................................................................................................................................................................................................AAT-GGATTAAGAAGGTCGAGTGG....................................................................................................2340.7530100000020
......................................................................................................................................................................................................................AAT-GGATTAAGAAGGTCGAGTGGG...................................................................................................2440.7530000000120
........................................................................................................................................................AGTGCTGGCAACATACTCCGTCGGC.................................................................................................................................................................2580.7560410000010
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGTCGAGT......................................................................................................2540.7530100000020
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--...............................................................................................................................................23200.751503000001200
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGTC..........................................................................................................2140.7530300000000
...............................................................................................................................................................................................................................................................GAACTTTGGCAAGGAAGC-ACC.............................................................21200.751501500000000
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--ATGT...........................................................................................................................................27200.751500000001500
...................................................................................................................................................................................................................................................................................................................TCAG---------CAAAAAAGGCAGCGCTCG2270.7150400001000
.......................................................................................................................................................................CTCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................25200.701400000001400
...............................................................................................................................................................................GCA--GAACGCAAGCCAG--ATGTCCAGC......................................................................................................................................25200.701404000001000
.......................................................................................................................................................................CTCCGTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................27200.701400000001310
......................................................................................................................................................................................................................................................................GGCAAGGAAGC-ACCG-----------AAGA----AGG......................................22200.701401400000000
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGC........................................................................................................................................................20200.701400000001040
...............................................................................................................................................................................................................ACGGACAAAT-GGATTAAGAAGGT...........................................................................................................2360.6740100000210
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGAA..............................................................................................................2360.6740400000000
..................CTG---------------------------CTGGTAAAGTGGAG---------------------G..............................................................................................................................................................................................................................................................1830.6720200000000
...................................................................................................................................TTTACATATGCCGACAGAAGGAGTGC.....................................................................................................................................................................................2630.6720000000020
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATG..................................................................................................................................................................................................................................................2530.6720200000000
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATGA.................................................................................................................................................................................................................................................2630.6720200000000
.....................................................................................................................................TACATATGCCGACAGAAGGAGTGC.....................................................................................................................................................................................2430.6720000000200
....................................................................................................................................................................................GAACGCAAGCCAG--ATGTCCAG.......................................................................................................................................21200.651301300000000
................................................................................................................................................................................................................................................................AACTTTGGCAAGGAAGC-ACCG-----------.................................................21200.651301300000000
.............................................................................................................................................................................................................................................................................AAGC-ACCG-----------AAGA----AGGAAGCCCC...............................22200.651301210000000
...............................................................................................................................................................................GCA--GAACGCAAGCCAG--ATGTCCAG.......................................................................................................................................24200.651302000001010
.............................................................................................................................................................................CGGCA--GAACGCAAGCCAG--ATGTCC.........................................................................................................................................24200.65130000000940
................................................................................................................................................................................................................................................CTCGAAGGTGCTGCCGAACTT.............................................................................21200.651301300000000
.........................................................................................................................................TATGCCGACAGAAGGAGTGC.....................................................................................................................................................................................2080.6350100001210
............................................................................................................................................................................TCGGCA--GAACGCAAGCCAG--ATGTCCAGC......................................................................................................................................28200.60120000000390
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--G.............................................................................................................................................................2270.5740310000000
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GAACGCA.......................................................................................................................................................2870.5740100000030
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--GAACGC........................................................................................................................................................2770.5740000000130
............................................................................................................................................................................................GCCAG--ATGTCCAGCCCGACGG...............................................................................................................................21180.561001000000000
......................................................................................................................................................................................................................................................................GGCAAGGAAGC-ACCG-----------AAGA----AGGA.....................................23200.551101010000000
....................................................................................................................................................................................................................................................AAGGTGCTGCCGAACTTTGGC.........................................................................21200.55110900000200
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACTTTGGCA........................................................................25200.551101100000000
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGC....................................................................................................................................................20200.55110300000530
......................................................................................................................................................................................................TCCAGCCCGACGGACAAAT-GGAT....................................................................................................................23190.53100700000210
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGA...............................................................................................................2060.5030000000120
.............................................................................................................T---AGTGTCAAAGCCAAATCCTTTACA.........................................................................................................................................................................................................2540.5020200000000
..........................................................................................................................................................................................................................GGATTAAGAAGGTCGAGTGGGCC.................................................................................................2340.5020200000000
...............................................................................................................................................................................................................ACGGACAAAT-GGATTAAGAAGGTC..........................................................................................................2440.5020000000020
.............................................................................................................................................................TGGCAACATACTCCGTCGGCA--..............................................................................................................................................................2180.5040400000000
...............................................................................................................................................................................................................ACGGACAAAT-GGATTAAGA...............................................................................................................1960.5030000000120
............................................................................................................CT---AGTGTCAAAGCCAAATCCT..............................................................................................................................................................................................................2140.5020200000000
...........................................................................................................ACT---AGTGTCAAAGCCAAATC................................................................................................................................................................................................................2040.5020200000000
............................................................................................................CT---AGTGTCAAAGCCAAATCCTTT............................................................................................................................................................................................................2340.5020200000000
........................................................................................................................................................................................................................T-GGATTAAGAAGGTCGAGTGGG...................................................................................................2240.5020000000020
............................................................................................................CT---AGTGTCAAAGCCAAATCCTT.............................................................................................................................................................................................................2240.5020100001000
...........................................................................................................ACT---AGTGTCAAAGCCAAATCCTTTACA.........................................................................................................................................................................................................2740.5020200000000
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCAG---------CA................2580.5040400000000
.............................................................................................................T---AGTGTCAAAGCCAAATCCTTTAC..........................................................................................................................................................................................................2440.5020200000000
...................................................................................................................................................................CATACTCCGTCGGCA--GAACGCAAGCCAG--A..............................................................................................................................................2960.5030000000300
....................................................................................................................................................................................................................CAAAT-GGATTAAGAAGGTCGAGTG.....................................................................................................2440.5020000000200
......................................................................................................................................................................................................................AAT-GGATTAAGAAGGTCGAGTGGGC..................................................................................................2540.5020000000200
............................................................................................................CT---AGTGTCAAAGCCAAATCCTTTA...........................................................................................................................................................................................................2440.5020200000000
.........................................................................................................................................................................................CAAGCCAG--ATGTCCAGCCCG...................................................................................................................................20170.4780701000000
..............................................................................................................................................................................................................................................................CGAACTTTGGCAAGGAAGC-AC..............................................................21200.4590000010620
................................................................................................................................................................................................G--ATGTCCAGCCCGACGGACA............................................................................................................................20200.4590900000000
...................................................................................................................................................................................................................................................................TTTGGCAAGGAAGC-ACCG-----------AAG..............................................21200.4590900000000
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCCAG--AT.............................................................................................................................................25200.4590010000800
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCAG---------CAAA..............2770.4330200001000
.......................................................................................................................................................................................................................................................................GCAAGGAAGC-ACCG-----------AAGA----AGG......................................21200.4080700100000
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCC...............................19200.4080700010000
..................................................................................................................................................................ACATACTCCGTCGGCA--GAAC..........................................................................................................................................................20100.4040000000040
....................................................................................................................................................................................................................................................................TTGGCAAGGAAGC-ACCG-----------AAGA----.........................................21200.4080800000000
............................................................................................................................................................................................................................................................................GAAGC-ACCG-----------AAGA----AGGAAGCCC................................22200.4080700000010
...................................................................................................................................................................CATACTCCGTCGGCA--GAACGC........................................................................................................................................................21100.4040100000120
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGCCAG--AA.............................................................................................................................................27200.4080100000520
........................................................................................................................................................................................................................................................................CAAGGAAGC-ACCG-----------AAGA----AGGA.....................................21200.4080600000200
..........................................................................................................................................................................................................GCCCGACGGACAAAT-GGATTAAGAAGGT...........................................................................................................2850.4020000000020
...........................................................................................................................................................................................................................................................TGCCGAACTTTGGCAAGGAAGC-ACC.............................................................25200.4080000000800
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAAGAAA.............................................................................................................2550.4020200000000
..................................................................................................................................................................ACATACTCCGTCGGCA--GAACGCAAG.....................................................................................................................................................2580.3830000000300
.........................................................................................................................................................GTGCTGGCAACATACTCCGTCG...................................................................................................................................................................2280.3830300000000
.........................................................................................................................................TATGCCGACAGAAGGAGTGCTGG..................................................................................................................................................................................2380.3830300000000
.........................................................................................................................................TATGCCGACAGAAGGAGTGCTG...................................................................................................................................................................................2280.3830000001020
........................................................................................................................................................................................................................................................TGCTGCCGAACTTTGGCAAGGAAGC-ACC.............................................................28200.3570000001330
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACTTTGGCAAG......................................................................27200.3570700000000
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCC..................................................................................................................................................25200.3570000000250
.....................................................................................................................................................................TACTCCGTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................29200.3570100000240
...................................................................................................................................................................................................................................................GAAGGTGCTGCCGAACTTTG...........................................................................20200.3570700000000
.....................................................................................................................................................................................................................................................................TGGCAAGGAAGC-ACCG-----------AAGA----AGGAAG...................................26200.3570500100100
......................................................................................................................................................................ACTCCGTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................28200.3570100000150
.................................................................................................................................................................................................................................................TCGAAGGTGCTGCCGAACT..............................................................................19200.3570700000000
...................TG---------------------------CTGGTAAAGTGGAG---------------------GG------GGAT...................................................................................................................................................................................................................................................2230.3310000001000
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGT...............................................................................................................2260.3320010000100
........................................................GTGGAG---------------------GG------GGATGAGTCA.............................................................................................................................................................................................................................................1830.3310100000000
...................TG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATC..................................................................................................................................................................................................................................................2330.3310000001000
......................................................................................................................................................................................................TCCAGCCCGACGGACAAAT-GGATTA..................................................................................................................2560.3320200000000
............................................................................................................................................................................................................CCGACGGACAAAT-GGATTAAGAAA.............................................................................................................2460.3320200000000
......................................................AAGTGGAG---------------------GG------GGATGAGTCA.............................................................................................................................................................................................................................................2030.3310100000000
..................CTG---------------------------CTGGTAAAGTGGAG---------------------GG------GG.....................................................................................................................................................................................................................................................2130.3310100000000
....................................................................................................................................TTACATATGCCGACAGAAGGAGTGC.....................................................................................................................................................................................2530.3310000100000
...................TG---------------------------CTGGTAAAGTGGAG---------------------GG------.......................................................................................................................................................................................................................................................1830.3310000000100
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------...............................................................................................................................................................................................................................................................1860.3320200000000
..............................................................................................................................................................................................CAG--ATGTCCAGCCCGACGGACAA...........................................................................................................................23180.3360600000000
...............................................................................................................................................................................................................ACGGACAAAT-GGATTAAGAAG.............................................................................................................2160.3320000000020
...........................................................................................................................................................................................................CCCGACGGACAAAT-GGATTAA.................................................................................................................2160.3320200000000
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------A......................................................................................................................................................................................................................................................2130.3310100000000
......................................................AAGTGGAG---------------------GG------GGATGAGTC..............................................................................................................................................................................................................................................1930.3310100000000
....................G---------------------------CTGGTAAAGTGGAG---------------------GG------GGAT...................................................................................................................................................................................................................................................2130.3310000000100
...................TG---------------------------CTGGTAAAGTGGAG---------------------GG------GGATA..................................................................................................................................................................................................................................................2330.3310000001000
..................................................................................................................................................................................................................GACAAAT-GGATTAAGA...............................................................................................................1660.3320000000110
.............................................................................................................................................................................................................CGACGGACAAAT-GGATTAAGAAG.............................................................................................................2360.3320200000000
..................................................GGTAAAGTGGAG---------------------GG------GGATGTT................................................................................................................................................................................................................................................2130.3310100000000
......................................................................................................................................................................................................TCCAGCCCGACGGACAAAT-GGATT...................................................................................................................2460.3320200000000
.................CCTG---------------------------CTGGTAAAGTGGAG---------------------GG------GA.....................................................................................................................................................................................................................................................2230.3310100000000
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGT...........................................................................................................2060.3320000000110
..................CTG---------------------------CTGGTAAAGTGGAG---------------------GG------GGA....................................................................................................................................................................................................................................................2230.3310100000000
...........................................................................................................................................................................................................................................TGGGCCTCGAAGGTGCTGCC...................................................................................20200.3060400002000
................................................................................................................................................................................................G--ATGTCCAGCCCGACGGACAA...........................................................................................................................21200.3060600000000
.....................................................................................................................................................................................................................................................AGGTGCTGCCGAACTTTGGC.........................................................................20200.3060600000000
................................................................................................................................................................................................................................................CTCGAAGGTGCTGCCGAACT..............................................................................20200.3060600000000
................................................................................................................................................................................CA--GAACGCAAGCCAG--ATGTCCAGC......................................................................................................................................24200.3060000000060
................................................................................................................................................................................................................................................CTCGAAGGTGCTGCCGAACTTTG...........................................................................23200.3060600000000
...........................................................................................................................................................................GTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................23200.3060200000310
...........................................................................................................................................................................................................................................................TGCCGAACTTTGGCAAGGAAGC-ACCG-----------AA...............................................28200.3060200000400
.........................................................................................................................................................................CCGTCGGCA--GAACGCAAGCCAG--ATG............................................................................................................................................25200.3060000000600
....................................................................................................................................................................ATACTCCGTCGGCA--GAACGCAAGCCAG--...............................................................................................................................................27200.3060600000000
.............................................................................................................................................................................................................................................................................AAGC-ACCG-----------AAGA----AGGAAGCC.................................20200.3060200300010
.........................................................................................................................................................................................CAAGCCAG--ATGTCCAGCCCGT..................................................................................................................................21170.2950500000000
.................................................................................................................................................................................................................................................................................................AAGA----AGGAAGCCCCTCAG---------CAAAAA............2470.2920200000000
.........................................................................................................................................TATGCCGACAGAAGGAGTGCTGGCAA...............................................................................................................................................................................2670.2920100000010
......................................................................................................................................................................................................TCCAGCCCGACGGACAAAT-GGA.....................................................................................................................22190.2650500000000
....................................................................................................................................................................................................................CAAAT-GGATTAAGAAGGTCGAG.......................................................................................................2240.2510000000100
....................................................................................................................................................................ATACTCCGTCGGCA--GAACG.........................................................................................................................................................19200.2550100000400
.................................................................................................................AGTGTCAAAGCCAAATCCTTTAC..........................................................................................................................................................................................................2340.2510100000000
.....................................................................................................CCATCTACT---AGTGTCAAAGCCAAATCC...............................................................................................................................................................................................................2740.2510100000000
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCCTCGAA............................................................................................2440.2510100000000
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCC.................................................................................................1940.2510100000000
.....................................................................................................CCATCTACT---AGTGTCAAAGCCAAATCCT..............................................................................................................................................................................................................2840.2510100000000
.......................................................................................................................................................................................................................AT-GGATTAAGAAGGTCGAGTGGGC..................................................................................................2440.2510000000100
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTG.....................................................................................................2340.2510100000000
................................................................................................................................................................................................................................................................................C-ACCG-----------AAGA----AGGAAGCCCCTCAG---------CAA...............2680.2520200000000
.......................................................................................................................................................................................CGCAAGCCAG--ATGTCCAGCCC....................................................................................................................................21200.2550500000000
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCCTCGAAC...........................................................................................2540.2510000000010
...........................................................................................................................................TGCCGACAGAAGGAGTGCTGGCAACA.............................................................................................................................................................................2640.2510100000000
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGAAGGTCG.........................................................................................................2640.2510000000010
......................................................................................................................................................................................................................AAT-GGATTAAGAAGGTCGAGTGGT...................................................................................................2440.2510000000100
..............................................................................................................................................................................................................................................................................AGC-ACCG-----------AAGA----AGGAAGCCCC...............................21200.2550400000100
...........................................................................................................ACT---AGTGTCAAAGCCAAATCCTTTAC..........................................................................................................................................................................................................2640.2510010000000
.......................................................................................................ATCTACT---AGTGTCAAAGCCA....................................................................................................................................................................................................................2040.2510100000000
................................................................................................................................................................................................................CGGACAAAT-GGATTAAGAAGGTCG.........................................................................................................2440.2510000000100
.............................................................................................................................................................................CGGCA--GAACGCAAGCCAG--ATGTCCAG.......................................................................................................................................26200.2550000000410
..................................................................................................................................................................................................................GACAAAT-GGATTAAGAAGGTCG.........................................................................................................2240.2510100000000
........................................................................................................................................................................TCCGTCGGCA--GAACGCAAGCC...................................................................................................................................................21200.2550500000000
.............................................................................................................T---AGTGTCAAAGCCAAATCCTTTT...........................................................................................................................................................................................................2340.2510100000000
.................................................................................................................AGTGTCAAAGCCAAATCCTTTA...........................................................................................................................................................................................................2240.2510100000000
............................................................................................................................................................................................................................................................................GAAGC-ACCG-----------AAGA----AGGAAGCCCCT..............................24200.2550500000000
.....................................................................................................CCATCTACT---AGTGTCAAAGCCAAATCCTT.............................................................................................................................................................................................................2940.2510100000000
.............................................................................................................................................................................................................................TTAAGAAGGTCGAGTGGGCC.................................................................................................2040.2510100000000
............................................................................................................CT---AGTGTCAAAGCCAAATCCTTTACATA.......................................................................................................................................................................................................2840.2510100000000
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCCTCGAAGG..........................................................................................2640.2510000001000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTC.....................................................................................................2340.2510000000010
.........................................................................................................CTACT---AGTGTCAAAGCCAAATCCTTTA...........................................................................................................................................................................................................2740.2510100000000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTGGGT..................................................................................................2640.2510000001000
.............................................................................................................................................................................................................................................................................AAGC-ACCG-----------AAGA----AGGAAGCCCCTCAG---------..................26200.2550500000000
..........................................................................................................................................................TGCTGGCAACATACTCCGTCG...................................................................................................................................................................2180.2520200000000
.........................................................................................................................................................................CCGTCGGCA--GAACGCAAGCCAG--ATGTC..........................................................................................................................................27200.2550000000500
............................................................................................................................................................................TCGGCA--GAACGCAAGCCAG--ATGTC..........................................................................................................................................24200.2550100000040
..........................................................................................................................................................................................................................................GTGGGCCTCGAAGGTGCTGCC...................................................................................21200.2550400001000
........................................................................................................................................................................................................................T-GGATTAAGAAGGTCGAGTGG....................................................................................................2140.2510100000000
......................................................................................................................................................................................................................AAT-GGATTAAGAAGGTCGAGTG.....................................................................................................2240.2510100000000
........................................................................................................................................................AGTGCTGGCAACATACTCCGTCGGCA--..............................................................................................................................................................2680.2520200000000
..............................................................................................................................................................................................................GACGGACAAAT-GGATTAAGAAGGTC..........................................................................................................2540.2510000000010
...................................................GTAAAGTGGAG---------------------GG------GGATT..................................................................................................................................................................................................................................................1840.2510100000000
.............................................................................................................T---AGTGTCAAAGCCAAATCCTTTA...........................................................................................................................................................................................................2340.2510100000000
..................................................................................................................................................................................................................................................................................ACCG-----------AAGA----AGGAAGCCCCTCAG---------CAA...............2580.2520200000000
................................................................................................................................................................................................................................AGAAGGTCGAGTGGGCCTCT..............................................................................................2040.2510100000000
.....................................................................................................................................................................................................................AAAT-GGATTAAGAAGGTCGAGTGGGCC.................................................................................................2740.2510100000000
..............................................................................................................................................................................................................................TAAGAAGGTCGAGTGGGCCT................................................................................................2040.2510100000000
droPer2
T-GCC---------CGACCTT---------------------------CTGGTGTAGCAGAG---------------------GG------GGATGACTTGCCGTCGACA---AGCGCTCAAGCCAAACGCTACACCTATGCCGAAAAAAGGAGTTCAGGGAACATACTCCGTCGGCACTCGCCAGAAGCGAA-----GCCAGCCCATCAGCCGACT-GGCTGAAGAAGGTGGAATGGGCTTCGACTATGCTCCCGGAGTTCACCTTAGAACA-GA--------------AAA----AGGTGGCTCCGCAA---------GCTAAGAGGCAGCGCTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................AACA-GA--------------AAA----AGGTGGCTCCGCAA---------GC................2511.001010000
.........................................................................................................................................................................................................................................................GCTCCCGGAGTTCACCTTAGAA...................................................................22160.061010000
......................................................................................................................................................................................................GCCAGCCCATCAGCCGACT-........................................................................................................................19200.051010000
...............................................................................................................................................................................................AA-----GCCAGCCCATCAGCCGACT-G.......................................................................................................................22200.051010000
.........................................................................................................................................................................................................................................................................TTAGAACA-GA--------------AAA----AGGTGGCTCC...............................23200.051010000
........................................................................................................................................................................................................................T-GGCTGAAGAAGGTGGAATG.....................................................................................................20200.051000001
........................................................................................................................................................................................................................T-GGCTGAAGAAGGTGGAATGGG...................................................................................................22200.051001000
droVir3
C-GGC-----------------------------------------------------------------------------------------------------------------------AAAGATATGTACATATTGGGAGAAAAAGAGCGCAGAGCATATCCTTCTTTGGCA--GAACGCGTGCAGA--ACGGCCAATCAATCAGCAGACT-GGCTGAAAAAAATTAAATGGGCCCGGAGTGTGCACCAAAGCTTCAGCGAAAAACC-ATCA-----------AGC-------ACGCAGAGGCAA---------TTAAAGAGGAAGCGTTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
A-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCCATCGGCTGCCT-GGCTGAAGAAACTTGAATGGGCGAATACGGTGTTTCCGAATTTTGGGCAGCAA-------------------------------GTCCAGAGG---------ACTAAGCGACAGCATTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A-ACT---------------------------------------------------------------------------------------------------------------T---GTGATAAAAGGTTCAGCTATGCCGACCGCAGAAATGCCGCAAGCATTCTGAAGCGGCA--AAACGCGAACATA--CAGCCAAATCCACCAGCCGAAT-GGCTAAACAAAGTGGTGTGGGCTAGGAAGGTGTTGCCAAACTTCTGTGAGGCTCC-ACCC-----------CATA----AAGAGCAAAGCCAG---------GCAAAAAGGCAGCGCTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................AGCTATGCCGACCGCAGAAAT.......................................................................................................................................................................................21200.05110

Generated: 05/18/2015 at 12:17 AM