ID:

dya_1206

 Coordinate:

4:318124-318274 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.8 -3.6 -3.3

Flybase annnotation

CDS [Dyak\GE14521-cds]; exon [dyak_GLEANR_14637:2]; intron [Dyak\GE14521-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGAGCGCTCCAAGGACGTTCCCTCCGACCCCTCGGCAAAGCGGCAACGCGTACAGCCAGGGTAGTCTTTTGCGGAGATCGCGAAAAACCGCAATCTCCTGGGCGTGGTCGACAGAAACGACCGAGTGGCAGGATTCAACGAAACAAGTGCAAGTGGGTGGAGGCAGCCCTAGCCACAAAATGTTTCGAAATCTTAGCCAAGGCAGCGTCAAGGTGATCGCCTGTAACGACGAGCGCTCTGGAGAGCTATAC
***********************************************************************************************************............(((.....(((.................))).....)))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V058
head
...............................................................................................................................................................................................................................TAACGACGAGCGCTCTGGAGAGCTAT.. 26 0 1 8.00 8 1 7 0 0
...............................................................................................................................................................................................................................TAACGACGAGCGCGCTGGAGAGCTAT.. 26 1 1 2.00 2 0 2 0 0
........................................................................................................................................AACGAAACAAGTGCAAGTGGGT............................................................................................. 22 0 1 2.00 2 1 0 1 0
..............................................................................................................................................................................................................................CTAACGACGAGCGCTCTGGAGAGC..... 24 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................TCGCCTGTAACGACGAGCGCTCTGG.......... 25 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................TTCGAAATCTTAGCCAAGGC................................................ 20 0 1 1.00 1 1 0 0 0
...........................................................................................................TCGACAGAAACGACCGAGTGGC.......................................................................................................................... 22 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................TGTTTCGAAATCTTAGCCAAGGCA............................................... 24 0 1 1.00 1 1 0 0 0
..........AAGGACGTTCCCTCCGACCCCTCGGAT...................................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................GCCAAGGCAGCGTCAAGGTGATCGC............................... 25 0 1 1.00 1 0 0 1 0
........................................................................................CGCAATCTCCTGGGCGTGGTCG............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
........................................................................................CGCAATCTCCTGGGCGTGGTCGACAGA........................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
...........................................................................................................TCGACAGAAACGACCGAGTGGCA......................................................................................................................... 23 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................TCTTAGCCAAGGCAGCGTCAAGGTGA................................... 26 0 1 1.00 1 1 0 0 0
..........................................................................................................GTCGACAGAAACGACCGAGTGG........................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................TAACGACGAGCGCACTGGAGAGCTAT.. 26 1 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................AGCCAAGGCTGTGTCAAGG...................................... 19 2 1 1.00 1 0 0 1 0
........................................................................................................................................AACGAAACAAGTGCAAGTGGGTGGA.......................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................................................................GTCGACAGAAACGACCGAGTGGCAAA....................................................................................................................... 26 2 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................TAGCCAAGGCAGCGTCAAGGTGATCGCC.............................. 28 0 1 1.00 1 1 0 0 0
............................................AACGCGTACAGCCAGGGTAGTCT........................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
..........AAGGACGTTCCCTCCGACCCCTCGGC....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
..........................................................................................................GTCGACAGAAACGACCGAGTGGG.......................................................................................................................... 23 1 1 1.00 1 0 0 0 1
.......................................................................................................................................CAACGAAACAAGTGCAAGTGGGTGG........................................................................................... 25 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................TAACGACGAGCGCTCTGTAGAGCTAT.. 26 1 1 1.00 1 0 1 0 0
........CCAAGGACGTTCCCTCCGACCC............................................................................................................................................................................................................................. 22 0 3 0.33 1 0 0 1 0
.......TCCAAGGAGGTTCCCTCCGACC.............................................................................................................................................................................................................................. 22 1 3 0.33 1 1 0 0 0
..........AAGGACGTACCCTCCGACCCCT........................................................................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
..................TCCCTCCGACCCCTCGGCAAAGCGGC............................................................................................................................................................................................................... 26 0 20 0.20 4 4 0 0 0
......................TCCGACCCCTCGGCAAAGCGGCAACGCG......................................................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0
.........................................................................................................................................................TGGGTGGAGGCAGCCCTAGCCACAAAA....................................................................... 27 0 9 0.11 1 1 0 0 0
..................TCCCTCCGACCCCTCGGCAAAGCGGCA.............................................................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0
...........AGGACGTTCCCTCCGACCCCTC.......................................................................................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0
..AGCGCTCCGAGGACGTTCCCTCCGAC............................................................................................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0
.................TTCCCTCCGACCCCTCGGCAAAGC.................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
.................TTCCCTCCGACCCCTCGGCAAAGCGGC............................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
...............................TCGGCAAAGCGGCAACGCGTACAGC................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0
.....................................AAGCGGCAACGCGTACAGCCAGGG.............................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
..................TCCCTCCGACCCCTCGGCAAAGC.................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
...................CCCTCCGACCCCTCGGCAAAGCGGC............................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.......................CCGACCCCTCGGCAAAGCGGCAACGCG......................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.................TTCCCTCCAACCCCTCGGCAAAGCGGC............................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
......................TCCGACCCCTCGGCAAAGCGGCAAC............................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CCTCGCGAGGTTCCTGCAAGGGAGGCTGGGGAGCCGTTTCGCCGTTGCGCATGTCGGTCCCATCAGAAAACGCCTCTAGCGCTTTTTGGCGTTAGAGGACCCGCACCAGCTGTCTTTGCTGGCTCACCGTCCTAAGTTGCTTTGTTCACGTTCACCCACCTCCGTCGGGATCGGTGTTTTACAAAGCTTTAGAATCGGTTCCGTCGCAGTTCCACTAGCGGACATTGCTGCTCGCGAGACCTCTCGATATG
*********************************************************************************************............(((.....(((.................))).....)))*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V120
male body		 V046
embryo
 V058
head
 M026
head
.................................................................................................................................................................CCGTCGGGATCGGTGTTTTACAAAGCTT.............................................................. 28 0 1 10.00 10 0 10 0 0 0 0 0
.......................................................................................................................TGGCTCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 27 0 1 10.00 10 8 0 0 1 0 1 0
........................................................................................................................GGCTCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 26 0 3 9.00 27 21 4 2 0 0 0 0
.........................................................................................................................GCTCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 25 0 3 7.00 21 21 0 0 0 0 0 0
.........................................................................CTCTAGCGCTTTTTGGCGTTAGAGGAC....................................................................................................................................................... 27 0 1 6.00 6 0 6 0 0 0 0 0
.....................................................................................................................................................................CGGGATCGGTGTTTTACAAAGCTTT............................................................. 25 0 1 6.00 6 4 0 0 1 1 0 0
......................................................................................TGGCGTTAGAGGACCCGCACCAGCTGTCT........................................................................................................................................ 29 0 1 5.00 5 0 5 0 0 0 0 0
...........................................................................................................................................................................CGGTGTTTTACAAAGCTTTAGAATCGG..................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0
.............................................................................................................................................................................................TAGAATCGGTTCCGTCGCAGTTCCAC.................................... 26 0 1 3.00 3 2 0 1 0 0 0 0
..........................................................CCCATCAGAAAACGCCTCTAGCGCTTTT..................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................................................................................................................................CGGGATCGGTGTTTTACAAAGCTT.............................................................. 24 0 1 3.00 3 2 0 0 0 1 0 0
...........................................................................................TTAGAGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 29 0 1 3.00 3 0 3 0 0 0 0 0
......................................................................................................................................................................................................TTCCGTCGCAGTTCCACTAGCGGACAT.......................... 27 0 2 3.00 6 6 0 0 0 0 0 0
........................................................................................................................................................................................AGCTTTAGAATCGGTTCCGTCGCAGT......................................... 26 0 1 2.00 2 1 0 0 0 1 0 0
...........................................................................................TTAGAGGACCCGCACCAGCTGTCTT....................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................CGCAGTTCCACTAGCGGACATTGCTGCT................... 28 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................TAGAGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................GTTAGAGGACCCGCACCAGCTGTCTT....................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................CGGGATCGGTGTTTTGCAAAGCTT.............................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................CCCATCAGAAAACGCCTCTAGCGCTT....................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................TCAGAAAACGCCTCTAGCGCTTTTT.................................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0
.............................GGAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 25 0 20 1.90 38 25 10 1 2 0 0 0
...........................GGGGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 25 0 20 1.80 36 20 15 0 1 0 0 0
.......................................................................................................................................................................................................TCCGTCGCAGTTCCACTAGCGGACAT.......................... 26 0 2 1.50 3 2 0 1 0 0 0 0
..........................................................................................................................CTCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 24 0 3 1.33 4 3 0 1 0 0 0 0
...............................................................................................AGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 25 0 20 1.30 26 4 22 0 0 0 0 0
.....................GAGGCTGGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 24 0 20 1.30 26 9 15 1 1 0 0 0
..............................................................................................GAGGACCCGCACCAGCTGTCTTTGC.................................................................................................................................... 25 0 20 1.25 25 1 24 0 0 0 0 0
....................GGAGGCTGGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 25 0 20 1.20 24 6 16 0 2 0 0 0
..............................................................................................GAGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 26 0 20 1.10 22 1 21 0 0 0 0 0
.........................................................................................CGTTAGAGGACCCGCACAAGCTGTCT........................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................GGTGTTTTACAAAGCTTTAGAATCGG..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................TGCTTTGTTCACGTTCACCCACCTCCG....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TACAAAGCTTTAGAATCGGTTCCGT............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TAGAATCGGTTCCGTCGCAGTTCCACT................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGGCGTTAGAGGACCCGCACCCGCTGTCT........................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TGCTGCTCGCGAGACCTCTCGAT... 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCTTTAGAATCGGTTCGGTCGCAGT......................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................AGCGGACATTGCTGCTCGCGAGACCT......... 26 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................CCGTCGGGATCGGTGTTCTACAAAGCTT.............................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................AGCGTACATTGCTGCTCGCGAGACCT......... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................GCTGGCTCACCGTCCTAAGTTGCTTT............................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGGCGTTAGAGGACCCGCACCAGCT............................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................CACGTTCACCCACCTCCGTCGGGAT................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGGCGTTAGCGGCCCCGCACCAGCTGTCT........................................................................................................................................ 29 2 1 1.00 1 0 1 0 0 0 0 0
................................................GCATGTCGGTCCCATCAGAAAACGCCT................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................CTGGCTCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................AGAATCGGTTCCGTCGCAGTTCCACT................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................TAGAGGACCCGCACCAGCTGTCTTT...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................GGCGTTAGAGGACCCGCACCAGCTGTCTT....................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TCGCAGTTCCACTAGCGCACATTGCT...................... 26 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................GATCGGTGTTTTACAAAGCTTTAGAAT........................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................CGGTGTTTTACAAAGCTTTAGAAT........................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................CAGTTGTTTTTGCTGGCTCATCGT......................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0
.....................................TTCGCCGTTGCGCATGTCGGTCCCAT............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................TCGGTCCCATCAGAAAACGCCTC............................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................GTCGGTCCCATCAGAAAACGCCTCT.............................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.......................................CGCCGTTGCGCATGTCGGTCCCAT............................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................GGCGTTAGAGGACCCGCACCAGCTGTCT........................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................GTTCACCCACCTCCGTCGGGAT................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TTAGAGGACCCGGACCAGCTGTCTTT...................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................CTAGCGCTTTTTGGCGTTAGAGGAC....................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................CGGTCCCATCAGAAAACGCCTCT.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGGCGTTAGAGGCCCCGCACCAGCTGTCT........................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................TGGCTCACCGTCCTAAGTTGCTTTGT.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AGCTTTAGAATCGGTTCCGTCGCAGTT........................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................CCGTCGGGATCGGTGTTTTACAAAGC................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................CGGTGTTTTACAAAGCTTTAGAAACTG..................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0
......................................................................................TGGCGTTAGAGGACCCGCACCGGCTGTCT........................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................GCTTTGTTCACGTTCACCCACCTCCG....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
....................................................GTCGGTCCCATCAGAAAACGCCTCTA............................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1
......................................................CGGTCCCATCAGAAAACGCCTCTAGCGC......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TACAAAGCTTTAGAATCGGTTCCGTCG............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................ATCGGTGTTTTACAAAGCTTTAGAAT........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GCTCACCGTCCTAAGTTGCTTTGT.......................................................................................................... 24 0 3 1.00 3 3 0 0 0 0 0 0
...........................................................................................................................TCACCGTCCTAAGTTGCTTTGTT......................................................................................................... 23 0 3 1.00 3 0 0 1 0 0 0 2
..............................................................................................................................................................................................................CAGTTCCACTAGCGTACATTGCTGCTC.................. 27 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................GGCTCACCGTCCTAAGTTGCTTTGT.......................................................................................................... 25 0 3 1.00 3 3 0 0 0 0 0 0
.....................................................................................................................................................................CGGGATCGGTGTTTTACAAAGCT............................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TCGGTGTTTTACAAAGCTTTAGAA......................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................GTTAGAGGACCCGCACCAGCTGTCT........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................CCCATCAGAAAACGCCTCTAGCGC......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TGTCTTTGCTGGCTCACCGTCCTAAGT.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTAGAATCGGTTCCGTCGCAGTTCCAC.................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TCGGTTCCGTCGCAGTTCCAC.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TGGCTCACCGTCCTAAGTTGCTTTT........................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................TCACGTTCACCCACCTCCGTCGGGAT................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................CCGGTGTTTTACAAAGCTTTAGAAT........................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................TTACAAAGCTTTAGAATCGGTTCCGT............................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................AGAATCGGTTCCGTCGCAGTTCCAC.................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................TTAGAGGACCCGCACCAGCTGTCTTT...................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................CGTTAGAGGACCCGCACCAGCTGTCT........................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................CGTTAGAGGACCCGCACCAGCTGTGT........................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................TGGCGTTAGAGGACCTGCACCAGCTGTCT........................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................CCCATCAGAAAACGCCTCTAGCGCTTT...................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................CTCTAGCGCTTTTCGGCGTTAGAGGAC....................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................GTTAACGTTCACCCACCTCCGT...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................GGCGTTAGAGGCCCCGCACCAGCTGTCTT....................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................TTTACAAAGCTTTAGAATCGGTTCCGT............................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................GCGTTAGAGGACCCGCACCAGCTGTC......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TTAGAGGACCCGCACCAGTTGTCTTT...................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................TTGCTGGCTCACCGTCCTAAGTT................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................AGAGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 27 0 20 0.90 18 1 17 0 0 0 0 0
......................AGGCTGGGGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 30 0 20 0.75 15 0 15 0 0 0 0 0
...........................GGGGATCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 27 1 20 0.70 14 0 14 0 0 0 0 0
...................GGGAGGCTGGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 26 0 20 0.65 13 2 11 0 0 0 0 0
...........................GGGGAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 27 0 20 0.60 12 0 9 0 2 1 0 0
..................................CGTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 24 0 20 0.60 12 11 0 1 0 0 0 0
.....................................................................................................................................................................CGGAATCGGTGTTTTACAAAGCTTT............................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCGTCGCAGTTCCACTAGCGGACATT......................... 26 0 2 0.50 1 0 0 1 0 0 0 0
......................................................................................................................................................................TGAATCGGTGTTTTACAAAGCTTTAGAAT........................................................ 29 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCGTCGCAGTTCCACTAGCGGAAAT.......................... 25 1 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TCCACTAGCGGACATTGCTGCTCGG................ 25 1 2 0.50 1 1 0 0 0 0 0 0
..TCGCGAGGTTCCTGCAAGGGAGGCT................................................................................................................................................................................................................................ 25 0 4 0.50 2 1 0 1 0 0 0 0
........................................................................................................................................................................................................CCGTCGCAGTTCCACTAGCGGACAT.......................... 25 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................CGGAATCGGTGTTTTACAAAGCTT.............................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TTGGTGTTTTACAAAGCTTTAGAAT........................................................ 25 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................CTCACCGTCCTAAGTTGCTTTGGT......................................................................................................... 24 1 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................GGCTCACCGTCCTAAGTTGCTTTGGT......................................................................................................... 26 1 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................GGCTCACCGTCCTAAGTGGCTTTGTT......................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................GCTCACCGTCCTAAGTGGCTTTGTT......................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................CTGACCGTCCTAAGTTGCTTTGTT......................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................GGCTCACCGACCTAAGTTGCTTTGTT......................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0 0
.........................................................................................................................TCTCACCGTCCTAAGTGGCTTTGTT......................................................................................................... 25 2 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................CTCACCGTCCTAAGTTGCTTTGT.......................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................CTCACCGTCATAAGTTGCTTTGTT......................................................................................................... 24 1 3 0.33 1 0 0 1 0 0 0 0
...............................AGCCGTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 27 0 20 0.30 6 6 0 0 0 0 0 0
...............................AGCCGTTTCGCCGTTGCGCATGTCGTT................................................................................................................................................................................................. 27 1 20 0.30 6 0 6 0 0 0 0 0
......................................................................................................................................................................................................TTCCGTCGCAGTTCCACTAGCGGACA........................... 26 0 4 0.25 1 1 0 0 0 0 0 0
...........................GGGGAGCCGTTTCGCCGTTG............................................................................................................................................................................................................ 20 0 20 0.25 5 0 5 0 0 0 0 0
.................................CCGTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 25 0 20 0.25 5 0 0 5 0 0 0 0
.............................................................................................AGAGGACCCGCACCAGCTGTCTTTGC.................................................................................................................................... 26 0 20 0.25 5 1 4 0 0 0 0 0
............................................................................................................................................................................................................CGCAGTTCCACTAGCGGACAT.......................... 21 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................ACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 22 0 20 0.20 4 3 0 1 0 0 0 0
..............................GAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 24 0 20 0.20 4 3 0 0 1 0 0 0
...................................GTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 23 0 20 0.20 4 4 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGTTCCACTAGCGGACAT.......................... 20 0 5 0.20 1 0 0 0 0 1 0 0
.........................CTGGGGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0 0
............CCTGCAAGGGAGGCTGGGGAGCCGTTT.................................................................................................................................................................................................................... 27 0 13 0.15 2 2 0 0 0 0 0 0
............................GGGAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0 0
....................GGAGGCTGGGGAGCCGTTTCGCCGTT............................................................................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0 0 0
...................................................................................................CCCGCACCAGCTGTCTTTGCT................................................................................................................................... 21 0 20 0.15 3 2 0 0 0 1 0 0
.....................GAGGCTGGGGAGCCGTTTCGCCG............................................................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0 0
................................................................................................GGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 24 0 20 0.15 3 2 0 1 0 0 0 0
.............CTGCAAGGGAGGCTGGGGAGCCGTT..................................................................................................................................................................................................................... 25 0 14 0.14 2 1 0 1 0 0 0 0
.............CTGCAAGGGAGGCTGGGGAGCCGT...................................................................................................................................................................................................................... 24 0 18 0.11 2 1 0 1 0 0 0 0
..........................TGGGGAGCCGTTGCGCCGTTGCGCAT....................................................................................................................................................................................................... 26 1 20 0.10 2 0 2 0 0 0 0 0
...............................................................................................AGGACCCGCACCAGCTGGCTTTGCT................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0 0 0
.................................CCGTTTCGCCGTTGCGCATGTCGGTC................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0 0 0
............................GGGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................AGAGGACCCGCACCAGCTGTCTTT...................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0
...................................GTTTCGCCGTTGCGCATGTCGGTCCC.............................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0 0
.......................................................................................................................................................TCACCCACCTCCGTCGGGATCGGT............................................................................ 24 0 12 0.08 1 1 0 0 0 0 0 0
............CCTGCAAGGGAGGCTGGAGAGCCGTT..................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0 0 0
............CCTGCAAGGGAGGCTGGGGAGCCGTT..................................................................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0 0 0
............CCTGCAAGGGAGGCTGGGGAGCCGT...................................................................................................................................................................................................................... 25 0 17 0.06 1 1 0 0 0 0 0 0
............CCTGCAAGGGAGGCTGGGGAGC......................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0 0
................CAAGGGAGGCTGGGGAGCCGTT..................................................................................................................................................................................................................... 22 0 17 0.06 1 0 0 0 0 1 0 0
............CCTGCAAGGGAGGCTGGGGAGCCG....................................................................................................................................................................................................................... 24 0 17 0.06 1 0 0 0 1 0 0 0
..........................TGGGGAGCCGTTTCGCAGTTGCGCAT....................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0
......................AGGCTGGGGAGCCGTTTCGCCGGTGCGCAT....................................................................................................................................................................................................... 30 1 20 0.05 1 0 1 0 0 0 0 0
...........................GAGGAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0
.....................GAGGCTGGGGAGCCGTTT.................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0
...........................GGGGAGCTGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
.........................CTGGGGAGCCGTTTCGCCGTTGCGAAT....................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
..................................CGTTTCGCCGTTGCGCATGTCGGTC................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0
...............................AGCCGTTTCGCCGTTGCGCATGTCGG.................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0
...........................GGGGAGCCGTTTCGCCGTTGCGC......................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0
.........................CTGGGGAGCCGTTTCGCCGTTGCGC......................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................AGGACCCGCACTAGCTGTCTTTGCT................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
....................GGAGGCTGGGGGGCCGTTTCGCCGT.............................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0
.................................CCGTCTCGCCGTTGCGCATGTCGG.................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0 0
................................GCCGTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................AGGACACGCACCAGCTGTCTTTGCT................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
...............................................................................................AGGACCCGCACGAGCTGTCTTTGCT................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
..................................CGTCTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TCCAAGGCCTTAGAATCG...................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................AGAGGACCCGCACCAACTGTCTTT...................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0
............................AGGAGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................GAGGACCCGCAACAGCTGTCTTTGC.................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
....................GGAGGCTGAGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0
..............................GAGCCGTTTCGCCGTTGCGCATGTCGGT................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0
.....................GAGGCTGGGGGGCCGTGTCGCCGT.............................................................................................................................................................................................................. 24 2 20 0.05 1 0 1 0 0 0 0 0
......................AGGCTGGGGAGCCGTTTCGCCGTTGC........................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0
......................AGGTTGGGGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 30 1 20 0.05 1 0 1 0 0 0 0 0
..........................TGGGGCGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................CGAGGACCCGCACCAGCTGTCTTTGCT................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
...................GGGAGGCTGGGGAGCCGTTTCGC................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0
.....................GAGGCTGGGGAGCCGTTTCTCCGT.............................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0 0
.................................CCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................AGAGGACCCGCACGAGCTGGCTTTGCT................................................................................................................................... 27 2 20 0.05 1 0 1 0 0 0 0 0
....................GGAGGCTAGGGAGCGGTTTCGCCGT.............................................................................................................................................................................................................. 25 2 20 0.05 1 0 1 0 0 0 0 0
.......................GGCTGGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0
.................................CCGTTTCGCCGTTGCGCATGTCGG.................................................................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0 0 0 0
.........................CTGGGGAGCCGTTTCGCCGTTGCG.......................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0
...........................GGGGATCCGTTTCGCCGTTGCGCCTGT..................................................................................................................................................................................................... 27 2 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................TCGCACCAGCTGTCTTTGC.................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
....................GGAGGCTCGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................GAGGACCCGCAGCAGCTGTCTTTGC.................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................GGGGACCCGGACCAGCTGTCTTTGCT................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0 0
..................................CGTTTCGCCGTTGCGCATGTCGGTCC............................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................GAGGACACGCACCAGCTGCCTTTGCT................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0 0
...............................AGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0
.....................GAGGCTGGGGAGCCGTTTCGCCTT.............................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0 0
...........................GGGGGGCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
..........................TGGGGAGCCGTTTCGCTGTTGCGCAT....................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0
......................AGGCTGAGGAGCCGTTTCGCCGTT............................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0
.............................................................................................AGAGGACCCGCACCAGCCGTCTTTGCT................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
...................................GTTTCGCCGTTGCGCATGTCGGTC................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0
.....................GAGGCTAGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0
.............................GGAGCCGTTTCGCCGTTGCGCAT....................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0
....................GGAGGCTAGGGAGCCGTTTCGCCGT.............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................TGGCGTGAGAGGACCCGCACCAGCT............................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0
................................GCCGTTTCGCCGTTGCGCATGT..................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................CTAGCGCTTTTTGGC................................................................................................................................................................. 15 0 20 0.05 1 0 1 0 0 0 0 0
.............................GGAGCCGTTTCGCCGTTGCGCATG...................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0
...................................GTTTCGCCGTTGCGCATGTCGGTCC............................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
......................AGGCTGGGGAGCCGTTTCGCC................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0
...........................GGGGAGCCGTGTCGCCGTTG............................................................................................................................................................................................................ 20 1 20 0.05 1 0 1 0 0 0 0 0
...............................................................................................AGGACCCGCACCAGCTGTCT........................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0
....................GGAGGCTGGGGAGCCGTTTCGCCGTTGC........................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................CCCGCACCAGCTGTCTTTGC.................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0
....................GGAGGCTGGGGAGCCGTTTCGCCG............................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 4:318074-318324 - dya_1206 GGAGCGCTCCAAGGACGTTCCCTCCGACCCCTC-GGCAAAG-----CGGCAACGCGTACAGCCAGGGTAGTCTTTTGCGGAGATCGCGAAAAACCGCAATCTCCTGGGCGTGGTCGACAGAAACGACC-GAGTGGCAGGATTCAACGAAACAAGTGCAAGTGGGTGGAGGCAGCCCTAGCCACAAAATGTTTCGAAATCTTAGCC-------------------------------------------------AAGGCAGCGTCAAGGTGATCGCCTGTAACGACGAGCGCTCTGGAGAGCTATAC
droBia1 scf7180000297633:13649-13932 - GCAGCGTCCCCTCGAGCTACCCGG---ACCATC-GGCGAAG-----AAATGTAAGTTCCAGCCATCGTTCTCTTTCGCCGAGATCAGCAAAGATCGGA-----------CCTATCAAAAGGGGCAAACAGGAGTGCGTGTTCCACAGAAATAGGTGGAAGGCCGTGGAATCCCAGCTCTCCCGAATTTGCCTGCGCACGTTAAGGGAA---AAGCCAGGTTCACCGCCCTGCTTCATGGACGCCGGCTGGTATTAAGGCAGCGACAATGTGGTGGCCTACGAAAGTCAGCGGGCGGCTGGCCTATAT
droTak1 scf7180000415669:1733-1979 + GCAACGCTCCATAGAGCTGCCCGG---TCCGTC-GGCGAAC-----GGATCGAAGATCCAGCCGTCGGTCTCCTTTGCCGAGATTATCAAAGATCGGGTCCTACTAGGACTTATAGATAGGGGAAATCCGGAGAACAGGATCCCCAGAAACAAATGGAAGGCGGTTGAGTCCAAGCTGTCTC---------------------------------------------------TTATGGACGCGGGCTGGTACCAGGGCAGTGTAAAAGTGGTGGCCTGCGATGATCAGCGATCAGCTGACCTTTAC
droEle1 scf7180000488772:2848-3073 - GCAGCGATCTCTAGAATTGCCTGG---ACCTGC-GGCAAAG-----AGATCAAAGGTCCAACCAAACCTGTCTTTTGCGGACATCACGCGGGATGGGATTTTGATTGGGCTGGTGGACGAGGGAAGTTCCGGAGGCTGGATCCCCAAAAGGGGAAAGCTGGC------------------------------------------------------------------------CAAGGACGCGGGGTGGATCCAATTCAGCGTCAAAGTGGTGGCCTACGATAGTCAGCGGTCGGCTGACCTATAC
droRho1 scf7180000775526:802-1049 - GCAACGCTCCATAGAGCTGCCCGG---TCCGTC-GGCGAAG-----AGATCGAAGATCCAGCCGTCGGTCTCCTTTGCCGAGATCACCAAAGATCGGGTCCTACTTGGACTCATAGATAGGGGAAATCCGGAGAACAGGATCCCCAGAAATAAATGGAAGGCGGTTGAGTCCAAGCTGTCTCTCATTTGCCTGCGT--------------------------------------------------ATGGTACCAGGGCAGCGTAAAAGTGGTGGCCTGCGATAATCAGCGATCAGCTGACCTATAT
droAna3 scaffold_12911:1696917-1697169 + GGAGAGATCTCAAGATGTGCCGGGAGAACCAAT-GGCAAAA-----CGGTTGCGCACACATCCAAAGCGTTCCTTCGTAGAGCTTGCAAAAAGCCGCATCCTGCTCTTGGTTATCGACAGGGGTAACCCTGACGGCAAAGTCCCAAGGGATAAGTGGAGATGGGTCGAAGCAGCCCTAGCAGCAAAATGCTTTGAGCTCCTGGCCAAG---GAACCAGGCCCCCC----TCCTCCAATGACGCGGGGTGGTTCCAAGGCAGCGTAA-----------------------------------------
droBip1 scf7180000392990:7327-7583 - AGAACGCTCAAAAGACGTGCAAGA---AGATTACGGCACAG-----CGGTTGCCCACTCAGCCGAAAAGGTCATTTGCGGAAATTTCTAAGAACCGGATACTCTTAGCAGTTGTCGGCCAAGGCAACCCTGACGGCAAGATACGTCGGCACAAATGGAGATGGGTAGTAGCCGCCTTTGCCACGAAATGTTTC------------------------------------------AAAGACGCGGGGTGGTTCCAGGAGAGCGTTAACGTGGTAGCGTGCGACGACAAGCAATCTGCAGAGCTTTAT
dp5 Unknown_group_37:780-1025 - GCAGCGCTCGCAAGAGACTCCGGG---GCCGAC-ACCGAAGCCCGGAGTGGCAGAGTGCTGCCTAGCACATCATTCGCGCAGATTGCCAGAGAAAGGACGCTGATTGGCGTCCTGGACAAAGGCAGCGTGGACTCCCGGATACATAGAAACCAGTGGAAGTGGGTGGAAGCGGCACTGGCCGACCGCTGCTTCGAGCTGCTGGAAAAG---CAGCCTGAACCCCCCCCCTTCTACAAAGACATGGGCTCGTA------------------------------------------------------C
droPer2 scaffold_158:56233-56474 + GCAGCGCTTGCAGGAGACACCTGG---ACCGGT-GGAAAAG-----CGCTCCAGAGTGCTGCCCAACGTCTCCTTTGCGCAGATCGGCAAGGAGAGGATGCTAATCGTCGTCCTCGACAAAGGCATCGCAGAGGAGGGAATACCAAGGAGTCAGTGGAAGTGGGTGGAAGCGGCACTAGCCGACCGCTGCTTCGATCTCCTCGACGTA---GACCCAGGACCACCACCAGTCTACAAGGATATGGGGTGGTTCC-----------------------------------------------------
droVir3 scaffold_13047:17379910-17380198 + GAAGCGTTCCAGTGAAACTTACGG---GCGCTA-CGGAAAA-----AGATCGCGCGTTAAACCAGAAA------TCGCACAGATTGCCACGGAGATGATCCTAATCGGAGTTCTAGACTACGGCAATCGGGAACAAAGAGTGCCCAGGCATCAATGGAAGTGGGTGGAAGCGGCATTGGCCATACGCTGTATTGAGCTACTGGAGACG---GACCCGGGTCCACCTCCTGTCTGCAATGCCGTCGGCTGGTATTGGGGGTCCGTTAAGGTTATCGCCTGCGAAGATAGGAGATCAGCCGAGCTATAT
droMoj3 scaffold_6500:17456855-17457152 + ACAGCATTCACAAGATGTGTCAGG---ACCGTC-TGTTAAG-----CATGCCAAGCTGCCGCCAACCAAATCCCTCTTTGAGATGACCAAGGATAGCATACTAATCGGCGTATTTGACCGGGGCCACGCTGAAGGCAGAATTCCGAGACGATATTGGAAATGGATCGAAGCTGCCTTAGCAGATAAGTGCTTTGACCTGCTCGTCGAGTCAGAGTCGGGTCCACCACCTAGCTGCAAGGATGTCGGCTGGTATCAAGGCAACGTGAAAATCATATCATGCGATAGTCAACGATCTGTGGAACTCTAC
droGri2 scaffold_15018:31206-31447 + GCAACGCTCTCAAGAACCGCACAG---ACCCGT-TGCAAAA-----TGGGTCAAAGTGCAGCCGAGAAAGTCCTTCGCCGAAATTGCCAAGAAGAGAATCCTCATAGGGATCTTCGACAAGGGCAACAAGGATGGAAGGATTCCCAAAAACCAGTGGAAGTGGGTTGATGGAGCTCTAGCTGTCCGATGCTTACAGATGCTAAGTAAG---GCGCCTAGGCCACCACCAGTATGCAGAGATGCTGGCTGGTACC-----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GGAGCGCTCCAAGGACGTTCCCTCCGACCCCTC-GGCAAAG-----CGGCAACGCGTACAGCCAGGGTAGTCTTTTGCGGAGATCGCGAAAAACCGCAATCTCCTGGGCGTGGTCGACAGAAACGACC-GAGTGGCAGGATTCAACGAAACAAGTGCAAGTGGGTGGAGGCAGCCCTAGCCACAAAATGTTTCGAAATCTTAGCC-------------------------------------------------AAGGCAGCGTCAAGGTGATCGCCTGTAACGACGAGCGCTCTGGAGAGCTATACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................TAACGACGAGCGCTCTGGAGAGCTAT..2618.00801000000007
...............................................................................................................................................AACGAAACAAGTGCAAGTGGGT..............................................................................................................................................2212.00201100000000
................................................................................................................................................................................................................................................................................TCGCCTGTAACGACGAGCGCTCTGG..........2511.00101000000000
..............................................................................................................................................................................................TTCGAAATCTTAGCC-------------------------------------------------AAGGC................................................2011.00101000000000
.................................................................................................................TCGACAGAAACGACC-GAGTGGC...........................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................................TGTTTCGAAATCTTAGCC-------------------------------------------------AAGGCA...............................................2411.00101000000000
..........AAGGACGTTCCCTCCGACCCCTC-GGAT.............................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................GCC-------------------------------------------------AAGGCAGCGTCAAGGTGATCGC...............................2511.00100100000000
..............................................................................................CGCAATCTCCTGGGCGTGGTCG...............................................................................................................................................................................................2211.00101000000000
..............................................................................................CGCAATCTCCTGGGCGTGGTCGACAGA..........................................................................................................................................................................................2711.00101000000000
.................................................................................................................TCGACAGAAACGACC-GAGTGGCA..........................................................................................................................................................................2311.00101000000000
.....................................................................................................................................................................................................TCTTAGCC-------------------------------------------------AAGGCAGCGTCAAGGTGA...................................2611.00101000000000
................................................................................................................GTCGACAGAAACGACC-GAGTGG............................................................................................................................................................................2211.00101000000000
...............................................................................................................................................AACGAAACAAGTGCAAGTGGGTGGA...........................................................................................................................................2511.00101000000000
................................................................................................................GTCGACAGAAACGACC-GAGTGGCAAA........................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................TAGCC-------------------------------------------------AAGGCAGCGTCAAGGTGATCGCC..............................2811.00101000000000
..................................................AACGCGTACAGCCAGGGTAGTCT..........................................................................................................................................................................................................................................2311.00101000000000
..........AAGGACGTTCCCTCCGACCCCTC-GGC..............................................................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................GTCGACAGAAACGACC-GAGTGGG...........................................................................................................................................................................2311.00100000100000
..............................................................................................................................................CAACGAAACAAGTGCAAGTGGGTGG............................................................................................................................................2511.00101000000000
........CCAAGGACGTTCCCTCCGACCC.....................................................................................................................................................................................................................................................................................2230.33100100000000
..................TCCCTCCGACCCCTC-GGCAAAG-----CGGC.................................................................................................................................................................................................................................................................26200.20404000000000
......................TCCGACCCCTC-GGCAAAG-----CGGCAACGCG...........................................................................................................................................................................................................................................................28200.15303000000000
................................................................................................................................................................TGGGTGGAGGCAGCCCTAGCCACAAAA........................................................................................................................2790.11101000000000
..................TCCCTCCGACCCCTC-GGCAAAG-----CGGCA................................................................................................................................................................................................................................................................27200.10202000000000
...........AGGACGTTCCCTCCGACCCCTC-.................................................................................................................................................................................................................................................................................22160.06101000000000
.................TTCCCTCCGACCCCTC-GGCAAAG-----C....................................................................................................................................................................................................................................................................24200.05101000000000
.................TTCCCTCCGACCCCTC-GGCAAAG-----CGGC.................................................................................................................................................................................................................................................................27200.05101000000000
...............................TC-GGCAAAG-----CGGCAACGCGTACAGC.....................................................................................................................................................................................................................................................25200.05100100000000
......................................AAG-----CGGCAACGCGTACAGCCAGGG................................................................................................................................................................................................................................................24200.05101000000000
..................TCCCTCCGACCCCTC-GGCAAAG-----C....................................................................................................................................................................................................................................................................23200.05101000000000
...................CCCTCCGACCCCTC-GGCAAAG-----CGGC.................................................................................................................................................................................................................................................................25200.05101000000000
.......................CCGACCCCTC-GGCAAAG-----CGGCAACGCG...........................................................................................................................................................................................................................................................27200.05101000000000
......................TCCGACCCCTC-GGCAAAG-----CGGCAAC..............................................................................................................................................................................................................................................................25200.05101000000000
droBia1
GCAGCGTCCCCTCGAGCTACCCGG---ACCATC-GGCGAAG-----AAATGTAAGTTCCAGCCATCGTTCTCTTTCGCCGAGATCAGCAAAGATCGGA-----------CCTATCAAAAGGGGCAAACAGGAGTGCGTGTTCCACAGAAATAGGTGGAAGGCCGTGGAATCCCAGCTCTCCCGAATTTGCCTGCGCACGTTAAGGGAA---AAGCCAGGTTCACCGCCCTGCTTCATGGACGCCGGCTGGTATTAAGGCAGCGACAATGTGGTGGCCTACGAAAGTCAGCGGGCGGCTGGCCTATATSizeHit CountTotal NormTotal
No Reads
droTak1
GCAACGCTCCATAGAGCTGCCCGG---TCCGTC-GGCGAAC-----GGATCGAAGATCCAGCCGTCGGTCTCCTTTGCCGAGATTATCAAAGATCGGGTCCTACTAGGACTTATAGATAGGGGAAATCCGGAGAACAGGATCCCCAGAAACAAATGGAAGGCGGTTGAGTCCAAGCTGTCTC---------------------------------------------------TTATGGACGCGGGCTGGTACCAGGGCAGTGTAAAAGTGGTGGCCTGCGATGATCAGCGATCAGCTGACCTTTACSizeHit CountTotal NormTotal
No Reads
droEle1
GCAGCGATCTCTAGAATTGCCTGG---ACCTGC-GGCAAAG-----AGATCAAAGGTCCAACCAAACCTGTCTTTTGCGGACATCACGCGGGATGGGATTTTGATTGGGCTGGTGGACGAGGGAAGTTCCGGAGGCTGGATCCCCAAAAGGGGAAAGCTGGC------------------------------------------------------------------------CAAGGACGCGGGGTGGATCCAATTCAGCGTCAAAGTGGTGGCCTACGATAGTCAGCGGTCGGCTGACCTATACSizeHit CountTotal NormTotal
No Reads
droRho1
GCAACGCTCCATAGAGCTGCCCGG---TCCGTC-GGCGAAG-----AGATCGAAGATCCAGCCGTCGGTCTCCTTTGCCGAGATCACCAAAGATCGGGTCCTACTTGGACTCATAGATAGGGGAAATCCGGAGAACAGGATCCCCAGAAATAAATGGAAGGCGGTTGAGTCCAAGCTGTCTCTCATTTGCCTGCGT--------------------------------------------------ATGGTACCAGGGCAGCGTAAAAGTGGTGGCCTGCGATAATCAGCGATCAGCTGACCTATATSizeHit CountTotal NormTotal
No Reads
droAna3
GGAGAGATCTCAAGATGTGCCGGGAGAACCAAT-GGCAAAA-----CGGTTGCGCACACATCCAAAGCGTTCCTTCGTAGAGCTTGCAAAAAGCCGCATCCTGCTCTTGGTTATCGACAGGGGTAACCCTGACGGCAAAGTCCCAAGGGATAAGTGGAGATGGGTCGAAGCAGCCCTAGCAGCAAAATGCTTTGAGCTCCTGGCCAAG---GAACCAGGCCCCCC----TCCTCCAATGACGCGGGGTGGTTCCAAGGCAGCGTAA-----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGAACGCTCAAAAGACGTGCAAGA---AGATTACGGCACAG-----CGGTTGCCCACTCAGCCGAAAAGGTCATTTGCGGAAATTTCTAAGAACCGGATACTCTTAGCAGTTGTCGGCCAAGGCAACCCTGACGGCAAGATACGTCGGCACAAATGGAGATGGGTAGTAGCCGCCTTTGCCACGAAATGTTTC------------------------------------------AAAGACGCGGGGTGGTTCCAGGAGAGCGTTAACGTGGTAGCGTGCGACGACAAGCAATCTGCAGAGCTTTATSizeHit CountTotal NormTotal
No Reads
dp5
GCAGCGCTCGCAAGAGACTCCGGG---GCCGAC-ACCGAAGCCCGGAGTGGCAGAGTGCTGCCTAGCACATCATTCGCGCAGATTGCCAGAGAAAGGACGCTGATTGGCGTCCTGGACAAAGGCAGCGTGGACTCCCGGATACATAGAAACCAGTGGAAGTGGGTGGAAGCGGCACTGGCCGACCGCTGCTTCGAGCTGCTGGAAAAG---CAGCCTGAACCCCCCCCCTTCTACAAAGACATGGGCTCGTA------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGG........................................................................................................................................................................24810.758607700000540
...................................................................................................................GACAAAGGCAGCGTGGACTCC...........................................................................................................................................................................21810.258207610001400
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---C...............................................................................................24119.91109010502200000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCG.........................................................................................................................................................................2389.507607400000200
...................................................................................................................GACAAAGGCAGCGTGGACTCCC..........................................................................................................................................................................2288.887106920000000
...................................................................ACATCATTCGCGCAGATTGCCAG.........................................................................................................................................................................................................................2334.671401400000000
...................................................................................................................GACAAAGGCAGCGTGGACT.............................................................................................................................................................................1983.883102800001020
...................................................................................................................GACAAAGGCAGCGTGGACTC............................................................................................................................................................................2083.753002910000000
......................................................................TCATTCGCGCAGATTGCCAGAGA......................................................................................................................................................................................................................2333.671101100000000
...................................................................ACATCATTCGCGCAGATTGCCAGA........................................................................................................................................................................................................................2433.671101100000000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGGA.......................................................................................................................................................................2582.752201700101210
........................................................................................................TTGGCGTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2572.29160100000870
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGGAT......................................................................................................................................................................2682.251801500001200
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---................................................................................................23131.772302300000000
......................................................................TCATTCGCGCAGATTGCCAGA........................................................................................................................................................................................................................2131.6750500000000
...................................................................................................................GACAAAGGCAGCGTGGAC..............................................................................................................................................................................1881.381101100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CAGCC...........................................................................................2891.331201000000200
...................................................................ACATCATTCGCGCAGATTGCC...........................................................................................................................................................................................................................2141.2550400100000
......................................................................TCATTCGCGCAGATTGCCAGAGAA.....................................................................................................................................................................................................................2431.0030300000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAA.....................................................................................................21141.001401400000000
............................CCGAC-ACCGAAGCCCGGAGTGGC...............................................................................................................................................................................................................................................................2311.0010100000000
........................................................TGCTGCCTAGCACATCATTCGCGC...................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................GGCAGCGTGGACTCCCGGATAC....................................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................CCTTCTACAAAGACATG...............................................................1711.0010000000010
...................................................................ACATCATTCGCGCAGATTGCCA..........................................................................................................................................................................................................................2241.0040400000000
............................CCGAC-ACCGAAGCCCGGAGTGGCAGAG...........................................................................................................................................................................................................................................................2711.0010100000000
...............................................................................................................................................ATAGAAACCAGTGGAAGTGGGT..............................................................................................................................................2211.0010100000000
.....................................................................................................................................TCCCGGATACATAGAAACCAGTGGC.....................................................................................................................................................2511.0010100000000
............................................................................................................................................TACATAGAAACCAGTGGAAGTGGG...............................................................................................................................................2411.0010100000000
...............................................................................................................................................ATAGAAACCAGTGGAAGTGGGTGG............................................................................................................................................2411.0010100000000
.........................................................................................................................................................GTGGAAGTGGGTGGAAGCGG......................................................................................................................................20200.901800000011070
..................................................................CACATCATTCGCGCAGATTGCCAGAG.......................................................................................................................................................................................................................2630.6720200000000
......................................................................TCATTCGCGCAGATTGCCAG.........................................................................................................................................................................................................................2030.6720200000000
..................................................................................................................................................GAAACCAGTGGAAGTGGGTGG............................................................................................................................................2130.6720200000000
..................................................................CACATCATTCGCGCAGATTGCCAG.........................................................................................................................................................................................................................2430.6720200000000
....................................................................................................................ACAAAGGCAGCGTGGACTCCC..........................................................................................................................................................................2180.6350500000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CAGC............................................................................................27100.6060600000000
.................................................................................................................TGGACAAAGGCAGCGTGGACTCCCGGA.......................................................................................................................................................................2770.5740200000020
.............................................................................................................GTCCTGGACAAAGGCAGCGTGG................................................................................................................................................................................2270.5740400000000
..........................................................................................................................................................................................CTGCTTCGAGCTGCTGGAAAAG---C...............................................................................................23110.5560600000000
.......TCGCAAGAGACTCCGGG---GCCGAC-.................................................................................................................................................................................................................................................................................2320.5010100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CAG.............................................................................................26100.5050500000000
....................................................................................................................ACAAAGGCAGCGTGGACTCC...........................................................................................................................................................................2080.5040400000000
..........CAAGAGACTCCGGG---GCCGAC-ACCGA............................................................................................................................................................................................................................................................................2520.5010100000000
........................................................................................................TTGGCGTCCTGGACAAAGGCAGCG...................................................................................................................................................................................24180.5090100000710
....................................................................................TGCCAGAGAAAGGACGCTGATTGG.......................................................................................................................................................................................................24160.5080800000000
.......TCGCAAGAGACTCCGGG---GCCGAC-AC...............................................................................................................................................................................................................................................................................2520.5010100000000
.......TCGCAAGAGACTCCGGG---GCCGA...................................................................................................................................................................................................................................................................................2220.5010100000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGCTG.........................................................................................................23120.5060600000000
........................................................................................AGAGAAAGGACGCTGATTGGC......................................................................................................................................................................................................21200.50100200000251
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAA....................................................................................................22130.4660500000100
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CAGCCT..........................................................................................2990.4440400000000
.........................................................................................................TGGCGTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2470.4330200000100
..AGCGCTCGCAAGAGACTCCGGG---G.......................................................................................................................................................................................................................................................................................2350.4020200000000
..AGCGCTCGCAAGAGACTCCGGG---GC......................................................................................................................................................................................................................................................................................2450.4020200000000
.....................................................................................................TGATTGGCGTCCTGGACAAAGGCAGCG...................................................................................................................................................................................27180.3970000000700
....................................................................................TGCCAGAGAAAGGACGCTGATTG........................................................................................................................................................................................................23160.3860500001000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGGT.......................................................................................................................................................................2580.3830100000200
.....................................................................................................TGATTGGCGTCCTGGACAAAGGCAG.....................................................................................................................................................................................25200.3570300000040
....................................................................CATCATTCGCGCAGATTGCCAGAGA......................................................................................................................................................................................................................2530.3310100000000
.................................................................................................................................................AGAAACCAGTGGAAGTGGGTGGAA..........................................................................................................................................2430.3310100000000
....................................................................CATCATTCGCGCAGATTGCCAGA........................................................................................................................................................................................................................2330.3310100000000
......................................................................TCATTCGCGCAGATTGCCAGAGAAAGG..................................................................................................................................................................................................................2730.3310100000000
................................................................................................................................................TAGAAACCAGTGGAAGTGGGT..............................................................................................................................................2130.3310100000000
..................................................................CACATCATTCGCGCAGATTGCCAGA........................................................................................................................................................................................................................2530.3310100000000
...................................................................ACATCATTCGCGCAGATTGCCAGAG.......................................................................................................................................................................................................................2530.3310100000000
......................................................................TCATTCGCGCAGATTGCCAGAG.......................................................................................................................................................................................................................2230.3310100000000
.................................................................................................................................................AGAAACCAGTGGAAGTGGGT..............................................................................................................................................2030.3310100000000
.......................................................................CATTCGCGCAGATTGCCAGAGAAA....................................................................................................................................................................................................................2430.3310100000000
.....................................................................................GCCAGAGAAAGGACGCTGATTGGC......................................................................................................................................................................................................24150.3350100000220
......................................................................TCATTCGCGCAGATTGCCAGAGAAA....................................................................................................................................................................................................................2530.3310100000000
.........................................................................................................TGGCGTCCTGGACAAAGGCAGCG...................................................................................................................................................................................23180.3360200000310
................................................................................................................................................TAGAAACCAGTGGAAGTGGGTGG............................................................................................................................................2330.3310100000000
.......................................................................CATTCGCGCAGATTGCCAGAGAA.....................................................................................................................................................................................................................2330.3310100000000
..................................................................CACATCATTCGCGCAGATTGCCAGAGA......................................................................................................................................................................................................................2730.3310100000000
.......................................................................CATTCGCGCAGATTGCCAG.........................................................................................................................................................................................................................1930.3310100000000
...................................................................ACATCATTCGCGCAGATTGCCAGAGA......................................................................................................................................................................................................................2630.3310100000000
.....................................................................................GCCAGAGAAAGGACGCTGATTG........................................................................................................................................................................................................22160.3150400000100
.....................................................................................GCCAGAGAAAGGACGCTGATTGG.......................................................................................................................................................................................................23160.3150400000010
................................................................................................................................................................................TGGCCGACCGCTGCTTCGAGCT.............................................................................................................22130.3140400000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGC...........................................................................................................21130.3140301000000
.....................................................................................................TGATTGGCGTCCTGGACAAAGGCAGC....................................................................................................................................................................................26200.3060300001020
.....................................................................................................TGATTGGCGTCCTGGACAAAGG........................................................................................................................................................................................22200.3060600000000
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAA..........................................................................................................................................20170.2950500000000
.................................................................................................................TGGACAAAGGCAGCGTGGAC..............................................................................................................................................................................2070.2920100000010
..............................................................................................................TCCTGGACAAAGGCAGCGTGGACT.............................................................................................................................................................................2470.2920000000020
.....................................................................................................TGATTGGCGTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2870.2920100000010
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CA..............................................................................................25110.2730300000000
....................................................................................TGCCAGAGAAAGGACGCTGATTGGC......................................................................................................................................................................................................25150.2740100000300
...................................................................................................................GACAAAGGCAGCGTGGACAA............................................................................................................................................................................2080.2520200000000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGT........................................................................................................................................................................2480.2520200000000
...................................................................................................................GACAAAGGCAGCGTGGACTT............................................................................................................................................................................2080.2520200000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGCTGG........................................................................................................24120.2530300000000
..................................................................CACATCATTCGCGCAGATTGCCA..........................................................................................................................................................................................................................2340.2510100000000
....................................................................................................................ACAAAGGCAGCGTGGACTCCCGGA.......................................................................................................................................................................2480.2520200000000
...................................................................ACATCATTCGCGCAGATTGC............................................................................................................................................................................................................................2040.2510100000000
....................................................................................................................ACAAAGGCAGCGTGGACTCCCGG........................................................................................................................................................................2380.2520200000000
.....................................................................................................TGATTGGCGTCCTGGACAAAGGC.......................................................................................................................................................................................23200.2550300000020
..................................................................CACATCATTCGCGCAGATTGCCAA.........................................................................................................................................................................................................................2440.2510100000000
....................................................................................................................................................................................CGACCGCTGCTTCGAGCTGCTGG........................................................................................................23130.2330200010000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGCT..........................................................................................................22130.2330300000000
..........................................................................................................................................................................................CTGCTTCGAGCTGCTGGAAAAG---CAGCCT..........................................................................................2890.2220200000000
.....................................................................................................................................................................................GACCGCTGCTTCGAGCTGCT..........................................................................................................20140.2130300000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAA......................................................................................................20140.2130300000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGA.......................................................................................................19140.2130300000000
...................................................................................................................GACAAAGGCAGCGTGGAAA.............................................................................................................................................................................19100.2020200000000
...................................................................ACATCATTCGCGCAGATTG.............................................................................................................................................................................................................................1950.2010100000000
..........................................................................................................................................................TGGAAGTGGGTGGAAGCGGCACTGG................................................................................................................................25200.2040000000310
......................................................................................................................................................CCAGTGGAAGTGGGTGGAAGCGGC.....................................................................................................................................24150.2030100000110
.................................................................................GATTGCCAGAGAAAGGACGCTGA...........................................................................................................................................................................................................23150.2030300000000
.........................................................................................................TGGCGTCCTGGACAAAGGCAG.....................................................................................................................................................................................21200.2040300000010
........CGCAAGAGACTCCGGG---GC......................................................................................................................................................................................................................................................................................1850.2010100000000
....................................................................................TGCCAGAGAAAGGACGCTGATT.........................................................................................................................................................................................................22160.1930300000000
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAAGCG.......................................................................................................................................23170.1830300000000
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAAGC........................................................................................................................................22170.1830300000000
......................................................................................................................................................CCAGTGGAAGTGGGTGGAAGCGG......................................................................................................................................23170.1830300000000
GCAGCGCTCGCAAGAGACTCCGGG---T.......................................................................................................................................................................................................................................................................................2560.1710100000000
....................................................................................................................................................................................CGACCGCTGCTTCGAGCTGCTG.........................................................................................................22130.1520200000000
................................................................................................................................................................................TGGCCGACCGCTGCTTCGAGCTG............................................................................................................23130.1520100001000
...............................................................................................................................................................................CTGGCCGACCGCTGCTTCGAGC..............................................................................................................22130.1520200000000
.............................................................................................................................................................................CACTGGCCGACCGCTGCTTCGAGC..............................................................................................................24130.1520200000000
...................................................................................................................................................................GTGGAAGCGGCACTGGCCGA............................................................................................................................20200.1530300000000
.......................................................................................CAGAGAAAGGACGCTGATTGGC......................................................................................................................................................................................................22200.1530100000200
.....................................................................................................TGATTGGCGTCCTGGACAAAGGCA......................................................................................................................................................................................24200.1530300000000
.............................................................................................................GTCCTGGACAAAGGCAGCGTGGAC..............................................................................................................................................................................2470.1410100000000
..............................................................................................................TCCTGGACAAAGGCAGCGTGGAC..............................................................................................................................................................................2370.1410100000000
...............GACTCCGGG---GCCGAC-ACCGG............................................................................................................................................................................................................................................................................2070.1410100000000
.............................................................................................................GTCCTGGACAAAGGCAGCGTGGACT.............................................................................................................................................................................2570.1410100000000
.......................................................................................................ATTGGCGTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2670.1410100000000
.............................................................................................................GTCCTGGACAAAGGCAGCGTGGA...............................................................................................................................................................................2370.1410100000000
............................................................................................................CGTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2170.1410100000000
..........................................................................................................................................................................................CTGCTTCGAGCTGCTGGAAA.....................................................................................................20140.1420200000000
...............................................................................................................CCTGGACAAAGGCAGCGTGGA...............................................................................................................................................................................2170.1410000000010
..............................................................................................................TCCTGGACAAAGGCAGCGTGG................................................................................................................................................................................2170.1410100000000
..........................................................................................................GGCGTCCTGGACAAAGGCAGCGTGGA...............................................................................................................................................................................2670.1410000010000
................................................................................................................CTGGACAAAGGCAGCGTGGA...............................................................................................................................................................................2070.1410000000010
...............................................................................................................CCTGGACAAAGGCAGCGTGGACT.............................................................................................................................................................................2370.1410100000000
.............................................................................................................GTCCTGGACAAAGGCAGCGT..................................................................................................................................................................................2070.1410100000000
..............................................................................................................TCCTGGACAAAGGCAGCGTGGACTC............................................................................................................................................................................2570.1410000000010
.............................................................................................................GTCCTGGACAAAGGCAGCGTGGACTCC...........................................................................................................................................................................2770.1410100000000
..............................................................................................................TCCTGGACAAAGGCAGCGTG.................................................................................................................................................................................2070.1410100000000
................................................................................AGATTGCCAGAGAAAGGACGC..............................................................................................................................................................................................................21150.1320200000000
...................................................................................................................GACAAAGGCAGCGTGGAA..............................................................................................................................................................................1880.1310100000000
........................................................................................................................AGGCAGCGTGGACTCCCGGAA......................................................................................................................................................................2180.1310100000000
...................................................................................................................GACAAAGGCAGCGTGGACTAA...........................................................................................................................................................................2180.1310100000000
.....................................................................................GCCAGAGAAAGGACGCTGATTGT.......................................................................................................................................................................................................23160.1320000000020
.....................................................................................................................CAAAGGCAGCGTGGACTCCC..........................................................................................................................................................................2080.1310100000000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCGGAA......................................................................................................................................................................2680.1310010000000
....................................................................................................................ACAAAGGCAGCGTGGACTCCCGGAT......................................................................................................................................................................2580.1310100000000
......................................................................................................................AAAGGCAGCGTGGACTCCCGG........................................................................................................................................................................2180.1310100000000
......................................................................................................................AAAGGCAGCGTGGACTCCCGGAT......................................................................................................................................................................2380.1310100000000
....................................................................................................................ACAAAGGCAGCGTGGACTCCCG.........................................................................................................................................................................2280.1310100000000
....................................................................................................................ACAAAGGCAGCGTGGACTA............................................................................................................................................................................1980.1310100000000
...................................................................................................................GACAAAGGCAGCGTGGACTA............................................................................................................................................................................2080.1310100000000
..................................................................................................................GGACAAAGGCAGCGTGGACTCCC..........................................................................................................................................................................2380.1310001000000
...................................................................................................................GACAAAGGCAGCGTGGACTCCCA.........................................................................................................................................................................2380.1310100000000
...................................................................................................................GACAAAGGCAGCGTGGACC.............................................................................................................................................................................1980.1310000001000
..................................................................................................................GGACAAAGGCAGCGTGGAC..............................................................................................................................................................................1980.1310100000000
.......................................................................................................................AAGGCAGCGTGGACTCCCGG........................................................................................................................................................................2080.1310100000000
.....................................................................................................................CAAAGGCAGCGTGGACTCC...........................................................................................................................................................................1980.1310100000000
.....................................................................................................................CAAAGGCAGCGTGGACTCCCG.........................................................................................................................................................................2180.1310100000000
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAAG.........................................................................................................................................21170.1220200000000
.............................................................................CGCAGATTGCCAGAGAAAGGA.................................................................................................................................................................................................................21170.1220200000000
....................................................................................................................................................AACCAGTGGAAGTGGGTGGAAG.........................................................................................................................................22170.1220200000000
.............................................................................................................................................................................CACTGGCCGACCGCTGCTTCGA................................................................................................................22180.1120200000000
......................................................................................................................................................CCAGTGGAAGTGGGTGGAAG.........................................................................................................................................20180.1120200000000
..................................................................................................CGCTGATTGGCGTCCTGGACAAAGGCAG.....................................................................................................................................................................................28190.1120200000000
.......................................................................................................................................................................AAGCGGCACTGGCCGACCGCTG......................................................................................................................22190.1120200000000
........................................................................................................TTGGCGTCCTGGACAAAGGCAGC....................................................................................................................................................................................23200.1020100000010
........................................................................................................................................................AGTGGAAGTGGGTGGAAGC........................................................................................................................................19200.1020000000020
....................................................................................................CTGATTGGCGTCCTGGAC.............................................................................................................................................................................................18200.1020200000000
.........................................................................................................TGGCGTCCTGGACAAAGGCA......................................................................................................................................................................................20200.1020200000000
................................................................................................................................................................TGGGTGGAAGCGGCACTGG................................................................................................................................19200.1020200000000
..........................................................................................................................................................TGGAAGTGGGTGGAAGCGGCAC...................................................................................................................................22200.1020200000000
...................................................................................................GCTGATTGGCGTCCTGGAC.............................................................................................................................................................................................19200.1020100100000
...................................................................................................GCTGATTGGCGTCCTGGACAAAGG........................................................................................................................................................................................24200.1020200000000
........................................................................................AGAGAAAGGACGCTGATTGGCG.....................................................................................................................................................................................................22200.1020200000000
................................................................................................................................................................TGGGTGGAAGCGGCACTGGCCGA............................................................................................................................23200.1020200000000
.............................................................................................................................................................AAGTGGGTGGAAGCGGCACTGGC...............................................................................................................................23200.1020200000000
................................................................................................................................................................................TGGCCGACCGCTGCTTCGAGCTGCTGG........................................................................................................27110.0910100000000
............................................................................................................................................................................................GCTTCGAGCTGCTGGAAAAG---CAGCC...........................................................................................25110.0910100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---CT..............................................................................................25110.0910100000000
................................................................................................................................................................................TGGCCGACCGCTGCTTCGAGCTGCT..........................................................................................................25120.0810100000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGCTGGAA......................................................................................................26120.0810100000000
..........................................................................TCGCGCAGATTGCCAGAGAAAGGAC................................................................................................................................................................................................................25130.0810100000000
...........................................................................................................................................................................................TGCTTCGAGCTGCTGGAAAAG---C...............................................................................................22130.0810100000000
...........................................................................CGCGCAGATTGCCAGAGAAAGGACGC..............................................................................................................................................................................................................26130.0810100000000
..................................................................................................................................................................................GCCGACCGCTGCTTCGAGCTG............................................................................................................21130.0810100000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCTGCAAA........................................................................................................24130.0810100000000
.............................................................................................................................................................................................CTTCGAGCTGCTGGAAAAG---C...............................................................................................20130.0810100000000
..........................................................................TCGCGCAGATTGCCAGAGAAAGGACG...............................................................................................................................................................................................................26130.0810100000000
..................TCCGGG---GCCGAC-ACCGAAAAA........................................................................................................................................................................................................................................................................21130.0810100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAA---................................................................................................23130.0810100000000
.................................................................................................................................................................................GGCCGACCGCTGCTTCGAGCTT............................................................................................................22130.0810100000000
...........................................................................CGCGCAGATTGCCAGAGAAAGGACG...............................................................................................................................................................................................................25130.0810100000000
..........................................................................................................................................................................................CTGCTTCGAGCTGCTGGAAAA....................................................................................................21130.0810100000000
.........................................................................TTCGCGCAGATTGCCAGAGAAAGG..................................................................................................................................................................................................................24140.0710100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGG........................................................................................................18140.0710100000000
...................................................................................................................................................................................CCGACCGCTGCTTCGAGCT.............................................................................................................19140.0710100000000
..........................................................................................................................................................................................CTGCTTCGAGCTGCTGGAA......................................................................................................19140.0710100000000
........................................................................................................................................................................................CGCTGCTTCGAGCTGCTGGA.......................................................................................................20140.0710100000000
.........................................................................................................................................................................................GCTGCTTCGAGCTGCTGGAAAAG---T...............................................................................................24140.0710100000000
....................................................................................TGCCAGAGAAAGGACGCTGATTGGCGT....................................................................................................................................................................................................27150.0710000000010
..............................................................................................................................................................................................TTCGAGCTGCTGGAAAAG---................................................................................................18150.0710100000000
.....................................................................................GCCAGAGAAAGGACGCTGATTGGCGAG...................................................................................................................................................................................................27150.0710100000000
....................................................................................................................................................................................CGACCGCTGCTTCGAGCTG............................................................................................................19150.0710100000000
..........................................................................TCGCGCAGATTGCCAGAGAAAGG..................................................................................................................................................................................................................23150.0710100000000
................................................................................AGATTGCCAGAGAAAGGAC................................................................................................................................................................................................................19150.0711000000000
...........................................................................................................................................................................................TGCTTCGAGCTGCTGGAAAAG---................................................................................................21150.0710000000010
.................................................................................GATTGCCAGAGAAAGGACGCTGATTGG.......................................................................................................................................................................................................27150.0710100000000
..............................................................................GCAGATTGCCAGAGAAAGGAC................................................................................................................................................................................................................21150.0710100000000
...................................................................................TTGCCAGAGAAAGGACGCTGATTGGC......................................................................................................................................................................................................26150.0710000000010
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAAGCGGCA....................................................................................................................................26150.0710000000100
...............................................................................CAGATTGCCAGAGAAAGGACG...............................................................................................................................................................................................................21150.0710100000000
...................................................................................TTGCCAGAGAAAGGACGCTGATTGG.......................................................................................................................................................................................................25160.0610100000000
.....................................................................................................................................................ACCAGTGGAAGTGGGTGGAAGCGG......................................................................................................................................24160.0610100000000
...................................................................................TTGCCAGAGAAAGGACGCTGATTAA.......................................................................................................................................................................................................25160.0610100000000
...................................................................................TTGCCAGAGAAAGGACGCTGATA.........................................................................................................................................................................................................23160.0610100000000
....................................................................................TGCCAGAGAAAGGACGCTGA...........................................................................................................................................................................................................20160.0610100000000
....................................................................................................................................................AACCAGTGGAAGTGGGTGGAAGCGG......................................................................................................................................25160.0610000000100
droPer2
GCAGCGCTTGCAGGAGACACCTGG---ACCGGT-GGAAAAG-----CGCTCCAGAGTGCTGCCCAACGTCTCCTTTGCGCAGATCGGCAAGGAGAGGATGCTAATCGTCGTCCTCGACAAAGGCATCGCAGAGGAGGGAATACCAAGGAGTCAGTGGAAGTGGGTGGAAGCGGCACTAGCCGACCGCTGCTTCGATCTCCTCGACGTA---GACCCAGGACCACCACCAGTCTACAAGGATATGGGGTGGTTCC-----------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................GCTGCTTCGATCTCCTCGACGTA---GACC............................................................................................2712.002020000
...................................................................................................................GACAAAGGCATCGCAGAGGAGGG.........................................................................................................................................................................2311.001010000
.................................................................ACGTCTCCTTTGCGCAGATCGGCAAG........................................................................................................................................................................................................................2611.001010000
..........CAGGAGACACCTGG---ACCGGT-GGA..............................................................................................................................................................................................................................................................................2311.001010000
...............GACACCTGG---ACCGGT-GGAAAAG-----CGC..................................................................................................................................................................................................................................................................2511.001010000
..............................................................................................................................CGCAGAGGAGGGAATACCAAGGAGT............................................................................................................................................................2511.001010000
................................................................................................................................................AAGGAGTCAGTGGAAGTGGGTGG............................................................................................................................................23200.50100100000
................................................................................................................................................AAGGAGTCAGTGGAAGTGGGTG.............................................................................................................................................22200.50100100000
................................................................................................................................................AAGGAGTCAGTGGAAGTGGGTGGA...........................................................................................................................................24200.306060000
................................................................................................................................................AAGGAGTCAGTGGAAGTGGG...............................................................................................................................................20200.255031001
.........................................................................................................................................................GTGGAAGTGGGTGGAAGCGG......................................................................................................................................20200.204000004
.................................................................................................................................................AGGAGTCAGTGGAAGTGGGTGG............................................................................................................................................22200.204040000
.....................................................................................................................................................GTCAGTGGAAGTGGGTGGAAGCGG......................................................................................................................................24200.051010000
................................................................................................................................................AAGGAGTCAGTGGAAGTGG................................................................................................................................................19200.051010000
...................................................................................................................................................GAGTCAGTGGAAGTGGGTGGA...........................................................................................................................................21200.051000001
................................................................................................................................................AAGGAGTCAGTGGAAGTGGGTGGAA..........................................................................................................................................25200.051010000
......................................................................................................................................................TCAGTGGAAGTGGGTGGAAG.........................................................................................................................................20200.051000001
.................................................................................................................................................AGGAGTCAGTGGAAGTGGGTGGA...........................................................................................................................................23200.051010000
...................................................................................................................................................GAGTCAGTGGAAGTGGGTGGAAA.........................................................................................................................................23200.051010000
.................................................................................................................................................AGGAGTCAGTGGAAGTGGT...............................................................................................................................................19200.051000001
...................................................................................................................................................GAGTCAGTGGAAGTGGGTGGAAG.........................................................................................................................................23200.051010000
.......................................................................................................................................................CAGTGGAAGTGGGTGGAAGC........................................................................................................................................20200.051010000
droVir3
GAAGCGTTCCAGTGAAACTTACGG---GCGCTA-CGGAAAA-----AGATCGCGCGTTAAACCAGAAA------TCGCACAGATTGCCACGGAGATGATCCTAATCGGAGTTCTAGACTACGGCAATCGGGAACAAAGAGTGCCCAGGCATCAATGGAAGTGGGTGGAAGCGGCATTGGCCATACGCTGTATTGAGCTACTGGAGACG---GACCCGGGTCCACCTCCTGTCTGCAATGCCGTCGGCTGGTATTGGGGGTCCGTTAAGGTTATCGCCTGCGAAGATAGGAGATCAGCCGAGCTATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................TAGACTACGGCAATCGGGAACAAAGA........................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
......................GG---GCGCTA-CGGAAAA-----AGATCG...............................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...........................................................AACCAGAAA------TCGCACAC.................................................................................................................................................................................................................................1740.251000000000000000000000000000000000000000000000000000000000010000
droMoj3
ACAGCATTCACAAGATGTGTCAGG---ACCGTC-TGTTAAG-----CATGCCAAGCTGCCGCCAACCAAATCCCTCTTTGAGATGACCAAGGATAGCATACTAATCGGCGTATTTGACCGGGGCCACGCTGAAGGCAGAATTCCGAGACGATATTGGAAATGGATCGAAGCTGCCTTAGCAGATAAGTGCTTTGACCTGCTCGTCGAGTCAGAGTCGGGTCCACCACCTAGCTGCAAGGATGTCGGCTGGTATCAAGGCAACGTGAAAATCATATCATGCGATAGTCAACGATCTGTGGAACTCTACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCAACGCTCTCAAGAACCGCACAG---ACCCGT-TGCAAAA-----TGGGTCAAAGTGCAGCCGAGAAAGTCCTTCGCCGAAATTGCCAAGAAGAGAATCCTCATAGGGATCTTCGACAAGGGCAACAAGGATGGAAGGATTCCCAAAAACCAGTGGAAGTGGGTTGATGGAGCTCTAGCTGTCCGATGCTTACAGATGCTAAGTAAG---GCGCCTAGGCCACCACCAGTATGCAGAGATGCTGGCTGGTACC-----------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:16 AM