ID:

dya_1196

 Coordinate:

4:113349-113499 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.7 -7.0

Flybase annnotation

CDS [Dyak\GE14529-cds]; exon [dyak_GLEANR_14644:4]; intron [Dyak\GE14529-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. 2L:19522777-19522804 +
  2. 2R:6577006-6577033 +
  3. 3R:139614-139641 +
  4. 3R:359476-359503 +
  5. 3R:6269073-6269100 +
  6. v2_chrUn_1190:2195-2222 +
  7. v2_chrUn_3980:1078-1105 +
  8. v2_chrUn_1721:593-620 +
  9. v2_chrUn_2309:308-335 +
  10. v2_chrUn_4897:724-751 +
  11. v2_chrUn_2785:819-846 +
  12. v2_chrUn_5709:228437-228464 +
  13. v2_chrUn_6897:7743-7770 +
  14. v2_chrUn_6954:8118-8145 +
  15. v2_chr2L_random_028:1391557-1391584 +
  16. v2_chr2h_random_001:7203-7230 +
  17. v2_chr2h_random_003:425219-425246 +
  18. v2_chrUn_052:295-322 +
  19. v2_chrUn_083:602-629 +
  20. v2_chrUn_825:505-532 +
  21. 3L:23913053-23913080 -
  22. 2L:14588199-14588226 -
  23. 2L:20598924-20598951 -
  24. 2R:1040769-1040796 -
  25. X:4752866-4752893 -
  26. X:21089096-21089123 -
  27. dya_1196  4:113428-113455 -
  28. 4:1117372-1117399 -
  29. v2_chrUn_1414:43557-43584 -
  30. v2_chrUn_1471:47189-47216 -
  31. v2_chrUn_2222:36645-36672 -
  32. v2_chrUn_2244:708-735 -
  33. v2_chrUn_6018:1299-1326 -
  34. v2_chrUn_6166:10301-10328 -
  35. v2_chr2h_random_005:267671-267698 -
  36. chr2h:542168-542195 -
  37. v2_chr2L_random_019:80605-80632 -
  38. v2_chr2L_random_019:90815-90842 -
  39. v2_chr3R_random_170:291406-291433 -
  40. v2_chrUn_006:123374-123401 -
star
  1. 2L:14588154-14588175 -
  2. 2L:20598879-20598900 -
  3. 2R:1040724-1040745 -
  4. X:20721518-20721539 -
  5. X:21052037-21052058 -
  6. X:21089051-21089072 -
  7. dya_1196  4:113383-113404 -
  8. 4:936518-936539 -
  9. 4:1117327-1117348 -
  10. v2_chrUn_1471:47144-47165 -
  11. v2_chrUn_1857:3987-4008 -
  12. v2_chrUn_1913:1207-1228 -
  13. v2_chrUn_2222:36600-36621 -
  14. v2_chrUn_6166:10256-10277 -
  15. v2_chrUn_6581:632-653 -
  16. v2_chrUn_6728:18230-18251 -
  17. v2_chrUn_6896:10673-10694 -
  18. v2_chrUn_6885:5865-5886 -
  19. v2_chr3R_random_170:291361-291382 -
  20. v2_chrUn_300:2203-2224 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAAACTGCCACGCCCACACTTTTGAAAAATGTTTTAATATTTTTTCATTTTTGTATTGGTCTTGTAAATTTCTATCGATTTGCCAAAAAACTTTTGGCCACGCCCACTCTAACGCCCACAAACCGCCAAAAACTGTCCTTCGCACTTACACTAGCTGAGTAACGGGCAAATTTATAATATTTGTTGTACAATTTTTCAGGCTGTATAAATATTGTCATATATTTACTACAACATGAAGCTAGTGCGGAT
**********************************************************************************************..........((.((((...............................................))))...))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 V120
male body		 V046
embryo
 GSM1528802
follicle cells		 M043
female body
...........................................................................................................................................................................................................................TATATTTACTACAACATGAAGCT......... 23 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................TACCTGAGTAACGGGCAAATTTATA......................................................................... 25 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................CTACAACATGAAGCTGGT...... 18 1 2 0.50 1 0 0 1 0 0
..............................................................................................TTTGGCCACGCCCACTCTAACGCCCACA................................................................................................................................. 28 0 20 0.40 8 0 0 0 8 0
..................................................................................................................CGCCCACAAACCGCCAAAAACTGTCCTT............................................................................................................. 28 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................ACTTACACTAGCTGAGTAACGG.................................................................................... 22 0 20 0.05 1 0 0 0 0 1
.......................................................................................AAAAACTTTTGGCCACGCCCACTCTAACGCC..................................................................................................................................... 31 0 20 0.05 1 0 0 0 1 0
........................................................................TCTATCGATTTGCCAAAAAACTTT........................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1
..................................................................TAAATTTCTATCGATTTGCCA.................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
..............................................................................................TTTGGCCACGCCCACTCTAACGCCC.................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GTTTTTGACGGTGCGGGTGTGAAAACTTTTTACAAAATTATAAAAAAGTAAAAACATAACCAGAACATTTAAAGATAGCTAAACGGTTTTTTGAAAACCGGTGCGGGTGAGATTGCGGGTGTTTGGCGGTTTTTGACAGGAAGCGTGAATGTGATCGACTCATTGCCCGTTTAAATATTATAAACAACATGTTAAAAAGTCCGACATATTTATAACAGTATATAAATGATGTTGTACTTCGATCACGCCTA
************************************************************************************..........((.((((...............................................))))...))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 M043
female body
 V120
male body		 V046
embryo
........CGGTGCGGGTGTGAAAACTTTTTAC.......................................................................................................................................................................................................................... 25 0 20 0.55 11 11 0 0 0
.............................................................................................................................GCGGTTTTTGACAGGAAGCGTGAAT..................................................................................................... 25 0 20 0.30 6 0 6 0 0
........................................................................................................................................CAGGAAGCGTGAATGTGATCGACTCAGT....................................................................................... 28 1 20 0.10 2 2 0 0 0
..............................................AGTAAAAACATAACCAGAACAT....................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
....................................................................................................................GGGTGTTTGGCGGTTTTTGACA................................................................................................................. 22 0 20 0.05 1 1 0 0 0
..............................................................................................................................................GCGTGAATGTGATCGACTCATT....................................................................................... 22 0 20 0.05 1 0 0 1 0
......................................................................................................................................GACAGGAAGCGTGAATGTGATCGACT........................................................................................... 26 0 20 0.05 1 0 0 0 1
.............................................................................................................................GCGGTTTTTGACAGGAAGCGTGAATG.................................................................................................... 26 0 20 0.05 1 0 0 1 0
....................................................................................GGTTTTTTGAAAACCGGTGCGGGT............................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
.TTTTTGACGGTGCGGGTGTGAAAACT................................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0
.....................................................................................................................GGTGTTTGGCGGTTTTTGAC.................................................................................................................. 20 0 20 0.05 1 0 0 1 0
..........................................................................................................................TTGGCGGTTTTTGACAGGAAG............................................................................................................ 21 0 20 0.05 1 0 0 1 0
..............................................................................................AAACCGGTGCGGGTGAGATTGC....................................................................................................................................... 22 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 4:113299-113549 - dya_1196 CAAAAACTG---------------C----CACGCCCAC------ACTTTTGAAAAAT-GT--------------TT-TAATA--TT---TTTTCA--TTTTTG--------------------------------------------------------------T--ATTGGTCTTGTAAATTTCTATCGATTTGC-CAAAAA-A-CTTTTGGC--CACGCCCACTCTAACGCCCACAAACC---------GCCAAAAACT---GTCCTTCGCACTTA--------------------CACTAGCTGAGTAACGGGCAAATTTATAATATTTGTTGT----------------------------------------------------------------------AC---AATTTTTCAG-------------------------------------------G-------------------CTGTATAAATA-------------------------------TTGTCATATATTTACTACA-ACA---TGAAGCTAGTGCGGAT
droEre2 scaffold_1381:3116-3340 + CCAAAACTG---------------T----GACGCCCAC------ACTATTGAAAAAT-GT--------------TG-TGATA--TAT---TTTA---AATTAT--------------------------------------------------------------TAAATATATCTTGTACATTTCTATATATTTGC-CAAAAA-A-CTTTTTGC--CACACCCACTCCAACGCCCACAAACC---------GCCGAAAACT---GTCA----CACCCA--------------------CACTTTTAAAT-A---------A---------------------------------------G--------------------------GTTA--TATTTT----TTA-ATTTT---TTTATATATCTTGTAC-------------ATTTCTATAGAAATACTA----------------------------------------------------------------------------------------------AACAAGTTCA-GA
droSec2 scaffold_55:58701-58915 + TG----------------------C----CACGCCCAC------ACTTTTGAAAAAT-GT--------------GT-TGACA--TTT----TTCA--CATTTT--------------------------------------------------------------T--ATTAGTCTTTTAAATTTATATCGATTTGC-AAAAAA-ATCTTTTTGC--CACGCCCACTCGAGCGCTCTAAAACC---------GACCAACATC---AACA----CGCCCA--------------------CATTTTTGAAA-A---------TT--------------------------------------T--------------------------TTTCGATATTTG----TTT-AT---AATTTTATTAGTTGTGTAA-------------ATTTCTATCGATTTGCTA----------------------------------------------------------------------------------TAAAA------------------CG
droSim2 2l:23359832-23360040 + CCAAACCCG---------------C----CACTCCCAC------ACTTTTGAAAAAT-GC--------------GT-TGATA--TAT-TTTTTCA--TATTTT--------------------------------------------------------------T--AATAGTCTTGTAAATTTCTAT-GATTTGC-CAAAAATA-ATGTTTGC--CACGCCCACTCATACGCCTACAAACC---------GCACAAAACT---GCCA----CGCCTA--------------------TCCTTTTGCAACA---------T---------------------------------------G--------------------------TTTT------TATATTTGATATTTT---TCTATAGATTT------------------------------------------------------------------------------------------------------TTTCATATTTTTAT-------------------------TA
dm3 chr3LHet:201888-202119 + CTAAAACTG---------------C---CTACCCCCAC------ACTTTTCAAAAAT-GT--------------TT-TCATA--TT---ATTTTA--TAATTT--------------------------------------------------------------T--GTTAGTTTCGTGAATTTCTATCGATTTGA-CAAAAA-A-CTTTATGC--CACGCACACTCTAACGCCAACCAACC---------GCACAAAACT---GCCA----CGCCCA--------------------CACTTTTGAAA-A---------A--------------------------------------------------------------------------TTTG----TAT-ATATA---TTTATAGGTCTTGTAA-------------ATTTTTATCGATTTGCCAAAA-------------------------------------------AGATATTTAC------------------------CACG-CCC---TTAA----------GC
droEug1 scf7180000408959:7238-7485 - AAAAAACCA---------------A----AAATGTGAA------AATCTTGAAAA------CTATAAGAACTTCA----AAA--T------------------------------TTTCCTTAA----GATTACGTATTTAAGAGAGGCCTCTGCACATTGCAAC------------------------GAAGT---------T-G-CATCCGGC--CACGCCCTTTCTAACGCCCACAAACC---------ACGAAAATG-----CCT-T--CGTTTG--------------------ACCTTATATAACT---------T---------------------------------------ATTTCTGTTA--------------------------------------------------------------------------TAATCTATCGATTTACCAAAGA-------------------TTTTATAAATA-------------------------------TGATCATTATTTTGCTAT--TTA---TGAAGATATTTAAGTT
droBia1 scf7180000301407:3594-3816 - CCAAAACTG---------------T----GGTGGCCAC------AGTTGTCATGC-TAGAATTTTTTTTG-----------------------CT--AAAATG--------------------------------------------------------------T--ATTTGTCTCATTAAAACCTTTCTGTTGGC-CTAAAAAA-ATATTCGC--CACACTCACTCTAACGCACTAAAACG----------CTTAACACT---GTCTGC--CGCCCAAAATATCCAGTAGGT---GGCACTTTAGAAT-A---------TT-----TCTTTGC---------------------------------------------------------------TG---TTTATAT---------------------------AT------------------------------------------------------------------------------------------TTCCATTTTTATTTTTCT-CCC---TCAAGC--------TA
droTak1 scf7180000415877:365715-365971 + TAATAAAAG---------------CC--TGGCGCCCAC------ATCTTTACAGATT-TT--------------GT-TGAAG--TG-----TAAA--TATCAG--------------------------------------------------------------T--TTTTGTGTTATTAATACCTATCAAAATGAACAAAT--A-ATGCAATGCATGCAGCCAGTTTACTGCGTGCATAAC---------TTCAGTAACG--GTTACTTGATA-------------------GTCGAGGTATTTGAAA-T---------T--------------------------------------TATTTTAGTTAT------------------------------------CC---A--------------------------------ATTTTATTGTATAGTTACAA-------------------------------------------CTAT-----ACTAACTAACTATTCATGTATGTACTACA-GTACATTGAATTCATTACTATT
droEle1 scf7180000491113:334039-334161 - CAAC----------------------------GCCCAC------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--CACGCCCACTTTAACGCCCAAAAATA---------GCGAAAGTCT---TTCA----TGTCAC--------------------TC---------------------------------------------TGAGACAAGGTAAAG-----------------------------GG--TAGTTA----TT--------------------------TATATAATTTTAT---------------------------------TTTTAATT--------------------------------------------------------------------TTTTTGTATGATTGTT
droRho1 scf7180000769012:76-249 + AAGC-------------------------TGTGTCCAC------AGTTTTGATGC-TA-T--------------TA-TGAAA--ATT----TTAATTGATATG--------------------------------------------------------------T--ATTTGTTTCGTCAATAACTATCGATTGGC-CTAATA-A-AAGTTTGC--CACGCCCACTCTAACGCCCGAAAACC---------CAT-TAAACG---CTTAAACGCAATAA--------------------CG------------------------------------------------------------------------------------------------------------------------------------------------CCGTCTAACGGATGACTT------------------------------------------------TG-----TAACAG-------------------------C------------------TG
droFic1 scf7180000454040:680069-680212 - AGAAAATAT---------------CTATGTATGCTCGC------AGTTTTTACGT-TA-C--------------AA-TATA---TTT----GATATTGATATATTTTGATTTTACTTC-----TAAAAACGCAGAAA----------ACCGCTTTTT---AT-----------------------------------------T-T-TAATTTGC--CACGGCCACTTTCACGTCCACCAGCC---------TCAGGAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000299277:531738-531859 - ACTATTATT---------------T----G-AACCTATAC----TTATTTA--------------------------------------------------------------------------------------------------------------------------GGGTGGAAAACTA-------------------------------------------------------------------------------------------------------------------------------------------AGAAATTTACCGAAGAAATTATTAAAAGTTGTATAAA--------------------------------TATTGA----TT--------------------------TATATAATTTATC---------------------------------TATTATTA--------------------------------------------------------------------TCTATCTATTATTATT
droAna3 scaffold_13034:817867-817948 - AATATAAGT----------------------AATAC--------------------AAAATTCGTCTCGT---------------------CTA----G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------GTGCATGAACA-------------------------------TTGTTATATTCTTGCTACA-GCA---CAACGCCAACCCGGAT
droBip1 scf7180000396714:908747-908879 - GAATTTCTG---------------T----AGCGCCAGTACATAAAATTTTTTTGA-TG-C--------------CA-A---A----------CTA--TTTCTA---T-AG-----TTAACATAC----ATATATGTATTTGAAAAACAATCTGAAGTATTGTGTC--------------------------------------A-A-AATTTTGC--TACGCCCGCTCCCGCCACCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_2890:545-731 + GAAAATCTG---------------G----GGCATCCAC------AATTCTCAGAGA-----CTATTAAGGCTAGAGTAAACAAA--TT----TTG--TATCGGCAC---------TTCTGTTAGATCTAACTATAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGCCCACACAAAGG---------ACAAAAATCT---GTTG----CATCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACTAAAAAT
droPer2 scaffold_92:138869-139100 - AAAAATCTG---------------T----GGAATCTAC------AATTTTAAAGA-TA-C--------------GA-GCAAA--TCT----GTTCTAGA--TT--------------------------------------------------------------T--GGTAGTCTGTTAGATACATATATATATGG-TACAA----AATTTGGT--TGCACTAGCTCTTATAG------TCTCTGAGAACTAGGC--------------------------------------GTCAAAAAA------------------------------------------------TTCGTCATTCGTCTCGGCTATTTATGCTAAAAAATAATATATACATATG----TAT-AT---ACACTGTTAAG---------------------CTTTCCAAACGTTACA------------------------------------------------TTTA-----CTGACA-------------------------C------------------GT
droWil2 scf2_1100000004968:3332176-3332428 - AAAAAACAG---------------A----TTTTC--------------TTAAAAA------CTATGTAAGCTACCGACATTAAA--TT----TGG--TATGTAAGC---------TAGCTTAATAGACGTGCAGATATTGAC--T---------------ATTTA--------------------------------------A-A-AATTTTGC--CACGCCCATTTCCGCCCCCGAAAATT---------AAACAAAACA---GATT----TTCTCG--------------------AAAACTA-------------------ACAAAGCTA------AAGTCACCAAATTTAGTATGTA--------------------------------TATTGG----CT-------TAGTATGCGC-------------------------------------------GCAGAATACATATATTATAC--------ATATAATTATAATAA----ATTGAC------------------------C-TAGTC------------------CG
droVir3 scaffold_13047:6141482-6141558 + CTTACAC---------------------------------------TCATGGAAAAT-AT--------------TT-TAATA--TAT---TTTAG---TTTA---------------------------------------------------------------------------------------------------------------TC--TATTTCTCTTTCCATTCTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT-----ATAAAA-----------------------------------T--------AA
droMoj3 scaffold_6496:26410523-26410719 + AATAAATTT---------------A---TATCTCCTAC------ATCTTTAAAGC-TAGA---------------GTCTCTAAT--TTTTATGTA--TACTTA--------------------------------------------------------------T--ATGCATTTTATACAATTTCGG-CTTTTGT-CAA--A-ATTTACCCCC--CACCTCTAATCTAACGATAAAAAGCC---------GCTAAA-TCAGCCATTT----CACCCACTGTGCACTGTGGGC---AATA-TTAAGAGA-A---------TT-----TATTTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA-------------------------T------------------TT
droGri2 scaffold_14906:13445028-13445153 - ACCGCCACTAAATAATTTAAATAGC----TGTATCTGT------ATTTT----------------------------------------------------CG--------------------------------------------------------------A--ATTAGAGCCGTCAATTTTGATAGATAAAA-CA---A-T-ATTGTGGC--CACGCCCACACTTGCGCCCATAATCT---------CCA-AAGCCG---ATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CAAAAACTG---------------C----CACGCCCAC------ACTTTTGAAAAAT-GT--------------TT-TAATA--TT---TTTTCA--TTTTTG--------------------------------------------------------------T--ATTGGTCTTGTAAATTTCTATCGATTTGC-CAAAAA-A-CTTTTGGC--CACGCCCACTCTAACGCCCACAAACC---------GCCAAAAACT---GTCCTTCGCACTTA--------------------CACTAGCTGAGTAACGGGCAAATTTATAATATTTGTTGT----------------------------------------------------------------------AC---AATTTTTCAG-------------------------------------------G-------------------CTGTATAAATA-------------------------------TTGTCATATATTTACTACA-ACA---TGAAGCTAGTGCGGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTACTACA-ACA---TGAAGCT.........2311.00100000010000
.................................................................................................................................................................................................................TTTGGC--CACGCCCACTCTAACGCCCACA...........................................................................................................................................................................................................................................................................................................................................28200.40800000000008
.......................................................................................................................................................................................................................................CGCCCACAAACC---------GCCAAAAACT---GTCCTT...........................................................................................................................................................................................................................................................................................................28200.10200200000000
..................................................................................................................................................................................................................................................................................ACTTA--------------------CACTAGCTGAGTAACGG..............................................................................................................................................................................................................................................................22200.05101000000000
........................................................................................................................................................................................................AAAA-A-CTTTTGGC--CACGCCCACTCTAACGCC...............................................................................................................................................................................................................................................................................................................................................31200.05100000000001
........................................................................................................................................................................................TCTATCGATTTGC-CAAAAA-A-CTTT.......................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................TAAATTTCTATCGATTTGC-CA..................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................................................................................................................................TTTGGC--CACGCCCACTCTAACGCCC..............................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
CCAAAACTG---------------T----GACGCCCAC------ACTATTGAAAAAT-GT--------------TG-TGATA--TAT---TTTA---AATTAT--------------------------------------------------------------TAAATATATCTTGTACATTTCTATATATTTGC-CAAAAA-A-CTTTTTGC--CACACCCACTCCAACGCCCACAAACC---------GCCGAAAACT---GTCA----CACCCA--------------------CACTTTTAAAT-A---------A---------------------------------------G--------------------------GTTA--TATTTT----TTA-ATTTT---TTTATATATCTTGTAC-------------ATTTCTATAGAAATACTA----------------------------------------------------------------------------------------------AACAAGTTCA-GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
TG----------------------C----CACGCCCAC------ACTTTTGAAAAAT-GT--------------GT-TGACA--TTT----TTCA--CATTTT--------------------------------------------------------------T--ATTAGTCTTTTAAATTTATATCGATTTGC-AAAAAA-ATCTTTTTGC--CACGCCCACTCGAGCGCTCTAAAACC---------GACCAACATC---AACA----CGCCCA--------------------CATTTTTGAAA-A---------TT--------------------------------------T--------------------------TTTCGATATTTG----TTT-AT---AATTTTATTAGTTGTGTAA-------------ATTTCTATCGATTTGCTA----------------------------------------------------------------------------------TAAAA------------------CGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
CCAAACCCG---------------C----CACTCCCAC------ACTTTTGAAAAAT-GC--------------GT-TGATA--TAT-TTTTTCA--TATTTT--------------------------------------------------------------T--AATAGTCTTGTAAATTTCTAT-GATTTGC-CAAAAATA-ATGTTTGC--CACGCCCACTCATACGCCTACAAACC---------GCACAAAACT---GCCA----CGCCTA--------------------TCCTTTTGCAACA---------T---------------------------------------G--------------------------TTTT------TATATTTGATATTTT---TCTATAGATTT------------------------------------------------------------------------------------------------------TTTCATATTTTTAT-------------------------TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................TGAAAAAT-GC--------------GT-TGATA--TAT-TTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
.................................................TGAAAAAT-GC--------------GT-TGATA--TAT-TTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
..........................................................................................................................................................................................TAT-GATTTGC-CAAAAATA-ATGTTTGC--CA...............................................................................................................................................................................................................................................................................................................................................................2820.50100000000100000000
............................................................................................................................................................................................................................................ACAAACC---------GCACAAAACT---G................................................................................................................................................................................................................................................................................................................18200.5010100000000000000000
................................................TTGAAAAAT-GC--------------GT-TGATA--TAT-TTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
...............................................................................................................................................................................................................................................................CAAAACT---GCCA----CGCCTA--------------------TCCTTTTGC......................................................................................................................................................................................................................................................................2620.50100000000001000000
..............................................TTTTGAAAAAT-GC--------------GT-TGATA--TAT-TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
.........................................................................................................................................................................................................................................CCTACAAACC---------GCACAAAAC.....................................................................................................................................................................................................................................................................................................................19110.09100000000001000000
.....................................................AAAT-GC--------------GT-TGATA--TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000000010000000
dm3
CTAAAACTG---------------C---CTACCCCCAC------ACTTTTCAAAAAT-GT--------------TT-TCATA--TT---ATTTTA--TAATTT--------------------------------------------------------------T--GTTAGTTTCGTGAATTTCTATCGATTTGA-CAAAAA-A-CTTTATGC--CACGCACACTCTAACGCCAACCAACC---------GCACAAAACT---GCCA----CGCCCA--------------------CACTTTTGAAA-A---------A--------------------------------------------------------------------------TTTG----TAT-ATATA---TTTATAGGTCTTGTAA-------------ATTTTTATCGATTTGCCAAAA-------------------------------------------AGATATTTAC------------------------CACG-CCC---TTAA----------GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................TA--TT---ATTTTA--TAATTT--------------------------------------------------------------T--GTTAGTTTCGT.......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
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...........................................................................................................................................................................................................................CGCACACTCTAACGCCAACCAACC---------..............................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TCTATCGATTTGA-CAAAAA-A-C..........................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEug1
AAAAAACCA---------------A----AAATGTGAA------AATCTTGAAAA------CTATAAGAACTTCA----AAA--T------------------------------TTTCCTTAA----GATTACGTATTTAAGAGAGGCCTCTGCACATTGCAAC------------------------GAAGT---------T-G-CATCCGGC--CACGCCCTTTCTAACGCCCACAAACC---------ACGAAAATG-----CCT-T--CGTTTG--------------------ACCTTATATAACT---------T---------------------------------------ATTTCTGTTA--------------------------------------------------------------------------TAATCTATCGATTTACCAAAGA-------------------TTTTATAAATA-------------------------------TGATCATTATTTTGCTAT--TTA---TGAAGATATTTAAGTTSizeHit CountTotal NormTotal
No Reads
droBia1
CCAAAACTG---------------T----GGTGGCCAC------AGTTGTCATGC-TAGAATTTTTTTTG-----------------------CT--AAAATG--------------------------------------------------------------T--ATTTGTCTCATTAAAACCTTTCTGTTGGC-CTAAAAAA-ATATTCGC--CACACTCACTCTAACGCACTAAAACG----------CTTAACACT---GTCTGC--CGCCCAAAATATCCAGTAGGT---GGCACTTTAGAAT-A---------TT-----TCTTTGC---------------------------------------------------------------TG---TTTATAT---------------------------AT------------------------------------------------------------------------------------------TTCCATTTTTATTTTTCT-CCC---TCAAGC--------TASizeHit CountTotal NormTotal
No Reads
droTak1
TAATAAAAG---------------CC--TGGCGCCCAC------ATCTTTACAGATT-TT--------------GT-TGAAG--TG-----TAAA--TATCAG--------------------------------------------------------------T--TTTTGTGTTATTAATACCTATCAAAATGAACAAAT--A-ATGCAATGCATGCAGCCAGTTTACTGCGTGCATAAC---------TTCAGTAACG--GTTACTTGATA-------------------GTCGAGGTATTTGAAA-T---------T--------------------------------------TATTTTAGTTAT------------------------------------CC---A--------------------------------ATTTTATTGTATAGTTACAA-------------------------------------------CTAT-----ACTAACTAACTATTCATGTATGTACTACA-GTACATTGAATTCATTACTATTSizeHit CountTotal NormTotal
No Reads
droEle1
CAAC----------------------------GCCCAC------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--CACGCCCACTTTAACGCCCAAAAATA---------GCGAAAGTCT---TTCA----TGTCAC--------------------TC---------------------------------------------TGAGACAAGGTAAAG-----------------------------GG--TAGTTA----TT--------------------------TATATAATTTTAT---------------------------------TTTTAATT--------------------------------------------------------------------TTTTTGTATGATTGTTSizeHit CountTotal NormTotal
No Reads
droRho1
AAGC-------------------------TGTGTCCAC------AGTTTTGATGC-TA-T--------------TA-TGAAA--ATT----TTAATTGATATG--------------------------------------------------------------T--ATTTGTTTCGTCAATAACTATCGATTGGC-CTAATA-A-AAGTTTGC--CACGCCCACTCTAACGCCCGAAAACC---------CAT-TAAACG---CTTAAACGCAATAA--------------------CG------------------------------------------------------------------------------------------------------------------------------------------------CCGTCTAACGGATGACTT------------------------------------------------TG-----TAACAG-------------------------C------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
AGAAAATAT---------------CTATGTATGCTCGC------AGTTTTTACGT-TA-C--------------AA-TATA---TTT----GATATTGATATATTTTGATTTTACTTC-----TAAAAACGCAGAAA----------ACCGCTTTTT---AT-----------------------------------------T-T-TAATTTGC--CACGGCCACTTTCACGTCCACCAGCC---------TCAGGAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACTATTATT---------------T----G-AACCTATAC----TTATTTA--------------------------------------------------------------------------------------------------------------------------GGGTGGAAAACTA-------------------------------------------------------------------------------------------------------------------------------------------AGAAATTTACCGAAGAAATTATTAAAAGTTGTATAAA--------------------------------TATTGA----TT--------------------------TATATAATTTATC---------------------------------TATTATTA--------------------------------------------------------------------TCTATCTATTATTATTSizeHit CountTotal NormTotal
No Reads
droAna3
AATATAAGT----------------------AATAC--------------------AAAATTCGTCTCGT---------------------CTA----G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------GTGCATGAACA-------------------------------TTGTTATATTCTTGCTACA-GCA---CAACGCCAACCCGGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTACA-GCA---CAACGCCAACCC....2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTACA-GCA---CAACGCCAACCCGG..2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GCA---CAACGCCAACCCGGAT2111.001010000
droBip1
GAATTTCTG---------------T----AGCGCCAGTACATAAAATTTTTTTGA-TG-C--------------CA-A---A----------CTA--TTTCTA---T-AG-----TTAACATAC----ATATATGTATTTGAAAAACAATCTGAAGTATTGTGTC--------------------------------------A-A-AATTTTGC--TACGCCCGCTCCCGCCACCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GAAAATCTG---------------G----GGCATCCAC------AATTCTCAGAGA-----CTATTAAGGCTAGAGTAAACAAA--TT----TTG--TATCGGCAC---------TTCTGTTAGATCTAACTATAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGCCCACACAAAGG---------ACAAAAATCT---GTTG----CATCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACTAAAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................TAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CC...............................................................................................................................................................................................................................................................................................................................................................27204.208400820200000
................................................................................................................................................T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCC..........................................................................................................................................................................................................................................................................................................................................................23201.152302300000000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTT......................................................................................................................................................................................................................................................................................................................................................23200.601201200000000
.....................................................................................................................................TAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--.................................................................................................................................................................................................................................................................................................................................................................25200.55110020000900
........................................................................................................AC---------TTCTGTTAGATCTAACTATAAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000100
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCG...................................................................................................................................................................................................................................................................................................................................................26200.501001000000000
.....................................................................................................................CTGTTAGATCTAACTATAAAACGTA--T---------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000100
................................................CTCAGAGA-----CTATTAAGGCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4590900000000
................................................CTCAGAGA-----CTATTAAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.4080800000000
...............................................TCTCAGAGA-----CTATTAAGGCTAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.4080000000800
................................................................................................................................................T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCCC........................................................................................................................................................................................................................................................................................................................................................25200.4080800000000
..............................................TTCTCAGAGA-----CTATTAAGGCTAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
..............................................TTCTCAGAGA-----CTATTAAGGCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
....................................................GAGA-----CTATTAAGGCTAGAGTAAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000100
...........................................................................................................................................GTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CC...............................................................................................................................................................................................................................................................................................................................................................21200.3060600000000
...................................................................................................................................................................................................................................................................................TCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA.............21200.2550500000000
................................................................................................................................................T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCC.........................................................................................................................................................................................................................................................................................................................................................24200.2550500000000
.....................................................................................................................................TAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATT.......................................................................................................................................................................................................................................................................................................................................................................21200.2550500000000
................................................................................................................................................................................................................................................................................................................TTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACT......19200.2550500000000
....................................................GAGA-----CTATTAAGGCTAGAGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
.................................................TCAGAGA-----CTATTAAGGCTAGAGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510100000000
...........................................................................................................................................GTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACC...........................................................................................................................................................................................................................................................................................................................................................25200.2550500000000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGC..................................................................................................................................................................................................................................................................................................................................................27200.2550400000100
.....................................................................................................................................................................................................................................................................T---GTTG----CATCCA--------------------CAATATTGCAGATT.................................................................................................................................................................................................................................................................25200.2040000000400
.......................................................................................................................................AAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--C................................................................................................................................................................................................................................................................................................................................................................24200.2040010000300
.............................................................................................................................................A--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACC...........................................................................................................................................................................................................................................................................................................................................................23200.2040400000000
....................................................................................................................................ATAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CC...............................................................................................................................................................................................................................................................................................................................................................28200.2040010000300
................................................................................................................................................T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCT.......................................................................................................................................................................................................................................................................................................................................................26200.2040400000000
............................................................................................................................................TA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCC..........................................................................................................................................................................................................................................................................................................................................................25200.1530030000000
.................................................................................................................................................................TCTC--------------------------------------A-G-AATTTCGC--CCCACC...........................................................................................................................................................................................................................................................................................................................................................20200.1530200100000
.................................................TCAGAGA-----CTATTAAGGCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000030
.................................................................................................................................ACTATAAAACGTA--T---------------ATCTC--------------------------------------A-G-...........................................................................................................................................................................................................................................................................................................................................................................21200.1530300000000
..................................................................................................................................................................................................................................................................................ATCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAA..........25200.1530300000000
.............................................................................................................................................A--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CC...............................................................................................................................................................................................................................................................................................................................................................19200.1530200010000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGCC.................................................................................................................................................................................................................................................................................................................................................28200.1530300000000
.................................................................................................................................................................................................................................................................................................................TGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACTAAAAAT2480.1310100000000
.............................................................................................................................................................................................................................................................................................................ATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAAC.......21200.1020200000000
..................................................CAGAGA-----CTATTAAGGCTAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000020
.............................................................................................................................................................................................................................................................................................................ATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACT......22200.1020000002000
............................................................................................................................................TA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCT.......................................................................................................................................................................................................................................................................................................................................................28200.1020200000000
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGC..................................................................................................................................................................................................................................................................................................................................................26200.1020200000000
.................................................................................................................................................................................................................TTTCGC--CCCACCCCCTTCCGC..................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
......................................................................................................................................AAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--C................................................................................................................................................................................................................................................................................................................................................................25200.1020200000000
.................................................TCAGAGA-----CTATTAAGGCTAGAGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020200000000
...................................................................................................................................................................................................................................................................................TCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA...........23200.1020200000000
................................................................................................................................................................................................................................................................AAATCT---GTTG----CATCCA--------------------CAATATTG.......................................................................................................................................................................................................................................................................24200.1020000000200
..........................................................................................................................................CGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACC...........................................................................................................................................................................................................................................................................................................................................................26200.1020000000200
......................................................................................................................................AAAACGTA--T---------------ATCTC--------------------------------------A-G-AAT........................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCC.........................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..............................................................................................................................................................................................................................................AAAGG---------ACAAAAATCT---GTTG----CATC.....................................................................................................................................................................................................................................................................................................23110.0910100000000
..............................................................................................................................................................................................................................................AAAGG---------ACAAAAATCT---GTTG----CA.......................................................................................................................................................................................................................................................................................................21110.0910100000000
...............................................................................................................................................................................................................................CCCTTCCGCCCACACAAAGG---------A.............................................................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCG...................................................................................................................................................................................................................................................................................................................................................25200.0510010000000
.................................................................................................................................................................................................................................................................................CATCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA...........25200.0510010000000
............................................................................................................................................TA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCA.............................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..................................................CAGAGA-----CTATTAAGGCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
.............................................................................................................................................................................................................................................................................................................ATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACTAAAA..26200.0510010000000
............................................................................................................................................TA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCC..............................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
...........................................................................................................................................................................................................................................................................TG----CATCCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA...........27200.0510000000100
.....................................................................................................................................TAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--C................................................................................................................................................................................................................................................................................................................................................................26200.0510000100000
...................................................................................................................................................................................................................TCGC--CCCACCCCCTTCCGCCCA...............................................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................ATAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--C................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
.............................................................................................................................................................................................................G-AATTTCGC--CCCACCCCCTTCCGCC.................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCC.........................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
.................................................................................................................................................................................................................................CTTCCGCCCACACAAAGG---------A.............................................................................................................................................................................................................................................................................................................................19200.0510100000000
...................................................................................................................................................................................................................TCGC--CCCACCCCCTTCCGCCCACACAA..........................................................................................................................................................................................................................................................................................................................................27200.0510100000000
....................................................................................................................................................................................................................................................................................CCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGA...........22200.0510100000000
......................................................................................................................................AAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCA.............................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
.................................................................................................................................................................TCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCT.......................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...................................................................................................................................................................................................................TCGC--CCCACCCCCTTCCGCCCAC..............................................................................................................................................................................................................................................................................................................................................23200.0510010000000
................................................................................................................................................................................................................................................................AAATCT---GTTG----CATCCA--------------------CAATATTGCAGAT..................................................................................................................................................................................................................................................................29200.0510100000000
...................................................AGAGA-----CTATTAAGGCTAGAGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................................................TAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCC..............................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
....................................................................................................................................................................................................................................................................................CCA--------------------CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACT......27200.0510010000000
................................................................................................................................................T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCA.............................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
..................................................................................................................................................................................................................TTCGC--CCCACCCCCTTCCGCC.................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
...........................................................................................................................................................................................................................................................................................................CAATATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAA..........20200.0510000100000
..............................................................................................................................................................................................................................................................................................................TATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAA........19200.0510000000010
....................................................................................................................................ATAAAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--.................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
........................................................................................................................................AACGTA--T---------------ATCTC--------------------------------------A-G-AATTTC.....................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCGCCC................................................................................................................................................................................................................................................................................................................................................29200.0510100000000
.............................................................................................................................................A--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCC..........................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCCCT.......................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................TC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTC.....................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.......................................................................................................................................AAACGTA--T---------------ATCTC--------------------------------------A-G-AATTTC.....................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
..............................................................................................................................................................................................................................................................................................................TATTGCAGATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAAACTA.....22200.0510000000100
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCCCTTC.....................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................................................GTA--T---------------ATCTC--------------------------------------A-G-AATTTCGC--CCCACCCA.........................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
GAAAATCTG---------------G----GGCATCCAC------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.................................................................................................................................................................TCTC--------------------------------------A-G-AATTTCGC--CCCACCCCCTTCCG...................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
....................................................................................................................................................................C--------------------------------------A-G-AATTTCGC--CCCACCCCCTT......................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
droPer2
AAAAATCTG---------------T----GGAATCTAC------AATTTTAAAGA-TA-C--------------GA-GCAAA--TCT----GTTCTAGA--TT--------------------------------------------------------------T--GGTAGTCTGTTAGATACATATATATATGG-TACAA----AATTTGGT--TGCACTAGCTCTTATAG------TCTCTGAGAACTAGGC--------------------------------------GTCAAAAAA------------------------------------------------TTCGTCATTCGTCTCGGCTATTTATGCTAAAAAATAATATATACATATG----TAT-AT---ACACTGTTAAG---------------------CTTTCCAAACGTTACA------------------------------------------------TTTA-----CTGACA-------------------------C------------------GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................TTATAG------TCTCTGAGAACTAGGC--------------------------------------G...................................................................................................................................................................................................................................................................................23200.459090000
.....................................................................................................................................................................................................................................TATAG------TCTCTGAGAACTAGGC--------------------------------------....................................................................................................................................................................................................................................................................................21200.408080000
....................................................................................................................................................................................................................................TTATAG------TCTCTGAGAACTAGGC--------------------------------------....................................................................................................................................................................................................................................................................................22200.306060000
....................................................................................................................................................................................................................................TTATAG------TCTCTGAGAACTAGG...........................................................................................................................................................................................................................................................................................................................21200.204040000
......................................................................................................................................................................................................................................ATAG------TCTCTGAGAACTAGGC--------------------------------------....................................................................................................................................................................................................................................................................................20200.102020000
...............................................................................................................................................................................................................................AGCTCTTATAG------TCTCTGAGAACTAGGC--------------------------------------....................................................................................................................................................................................................................................................................................27110.091010000
.....................................................................................................................................................................................................................................TATAG------TCTCTGAGAACTAGGC--------------------------------------GTCAAA..............................................................................................................................................................................................................................................................................27110.091010000
.....................................................................................................................................................................................................................................TATAG------TCTCTGAGAACTAGGC--------------------------------------G...................................................................................................................................................................................................................................................................................22200.051100000
.....................................................................................................................................................................................................................................TATAG------TCTCTGAGAACTAGG...........................................................................................................................................................................................................................................................................................................................20200.051010000
droWil2
AAAAAACAG---------------A----TTTTC--------------TTAAAAA------CTATGTAAGCTACCGACATTAAA--TT----TGG--TATGTAAGC---------TAGCTTAATAGACGTGCAGATATTGAC--T---------------ATTTA--------------------------------------A-A-AATTTTGC--CACGCCCATTTCCGCCCCCGAAAATT---------AAACAAAACA---GATT----TTCTCG--------------------AAAACTA-------------------ACAAAGCTA------AAGTCACCAAATTTAGTATGTA--------------------------------TATTGG----CT-------TAGTATGCGC-------------------------------------------GCAGAATACATATATTATAC--------ATATAATTATAATAA----ATTGAC------------------------C-TAGTC------------------CGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................TATGTAAGCTACCGACATTAAA--TT----TGG--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
...........................................................................................................................................GAC--T---------------ATTTA--------------------------------------A-A-AATTTTGC--CACGCCCA.........................................................................................................................................................................................................................................................................................................................................................27200.05101000
....................................................................................................................................................................................................................................................................................................................................................................TATGTA--------------------------------TATTGG----CT-------TAGTATGCGC-------------------------------------------G.......................................................................................................25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................TATGTA--------------------------------TATTGG----CT-------TAGTATG......................................................................................................................................................21200.05101000
............................................................................................TGG--TATGTAAGC---------TAGCTTAATAGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
droVir3
CTTACAC---------------------------------------TCATGGAAAAT-AT--------------TT-TAATA--TAT---TTTAG---TTTA---------------------------------------------------------------------------------------------------------------TC--TATTTCTCTTTCCATTCTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT-----ATAAAA-----------------------------------T--------AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AATAAATTT---------------A---TATCTCCTAC------ATCTTTAAAGC-TAGA---------------GTCTCTAAT--TTTTATGTA--TACTTA--------------------------------------------------------------T--ATGCATTTTATACAATTTCGG-CTTTTGT-CAA--A-ATTTACCCCC--CACCTCTAATCTAACGATAAAAAGCC---------GCTAAA-TCAGCCATTT----CACCCACTGTGCACTGTGGGC---AATA-TTAAGAGA-A---------TT-----TATTTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA-------------------------T------------------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................TAC------ATCTTTAAAGC-TAGA---------------GTCTCTAAT--G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................TAC------ATCTTTAAAGC-TAGA---------------GTCTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.502200000
......................................................................................................................................................................................................................C--CACCTCTAATCTAACGATAAAAAG.........................................................................................................................................................................................................................................................................................................................................2530.331000010
...................................TAC------ATCTTTAAAGC-TAGA---------------GTCTCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251100000
...................................TAC------ATCTTTAAAGC-TAGA---------------GTCTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251100000
....................................AC------ATCTTTAAAGC-TAGA---------------GTCTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251100000
...........................................................................................................................................................................................................................................................................................................TA-TTAAGAGA-A---------TT-----TATTTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.................................................2480.131000010
.............................................................................................TA--TACTTA--------------------------------------------------------------T--ATGCATTTTATACAATT.................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................TTTGT-CAA--A-ATTTACCCCC--CACCTC...........................................................................................................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................T-CAA--A-ATTTACCCCC--CACCTCC..........................................................................................................................................................................................................................................................................................................................................................22200.051000010
............................TATCTCCTAC------ATCTTTAAAGC-TAGA---------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................TTTGT-CAA--A-ATTTACCCCC--CACCTCT..........................................................................................................................................................................................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................GT-CAA--A-ATTTACCCCC--CACC.............................................................................................................................................................................................................................................................................................................................................................20200.051100000
...................................................................................................................................................................................................................................................................................................................AGA-A---------TT-----TATTTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA-------------------------T------------------..21200.051100000
.ATAAATTT---------------A---TATCTCCTAC------ATCTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droGri2
ACCGCCACTAAATAATTTAAATAGC----TGTATCTGT------ATTTT----------------------------------------------------CG--------------------------------------------------------------A--ATTAGAGCCGTCAATTTTGATAGATAAAA-CA---A-T-ATTGTGGC--CACGCCCACACTTGCGCCCATAATCT---------CCA-AAGCCG---ATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:21 AM