dya_119

GACTTAAAAATATGCCAAATGATTCAAATAAATTAAAAAAATTTACATGTCAGTCTAGTCTCAGGAGATATAACTCTAAGATTTTGTTATTACATAAATCTTAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAAAATAAAGTTTATAAATATTTATTAAATAGTG *******************************************..(((((((((.((.((((((((((((((.((((((((((((....))).))))))))))))))))))))))).)).)))....))))))************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M056 embryo	M043 female body	V120 male body	V046 embryo	M026 head	SRR1275484 Male prepupae
..................................................................................................TCTTAGGTTATGTTTTCTGAAA.....................................................	22	0	1	32.00	32	17	4	4	5	1	1
..................................................................................................TCTTAGGTTATGTTTTCTGA.......................................................	20	0	1	18.00	18	9	2	5	1	1	0
..................................................................................................TCTTAGGTTATGTTTTCTGAA......................................................	21	0	1	16.00	16	9	1	3	2	1	0
..................................................................................................TCTTAGGTTATGTTTTCTGAAAA....................................................	23	1	1	8.00	8	4	3	0	1	0	0
............................................................TCAGGAGATATAACTCTAAGATT..........................................................................................	23	0	1	8.00	8	7	1	0	0	0	0
............................................................TCAGGAGATATAACTCTAAGATC..........................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
..................................................................................................TCTTAGGTTATGTTTTCTGAAT.....................................................	22	1	1	3.00	3	1	1	1	0	0	0
.................................................................................................ATCTTAGGTTATGTTTTCTGA.......................................................	21	0	1	2.00	2	0	1	1	0	0	0
..................................................................................................TCCTAGGTTATGTTTTCTGA.......................................................	20	1	1	1.00	1	1	0	0	0	0	0
...................................................................................................CTTAGGTTATGTTTTCTGAAAA....................................................	22	1	1	1.00	1	0	1	0	0	0	0
..................................................................................................TGTTAGGTTATGTTTTCTGAAA.....................................................	22	1	1	1.00	1	1	0	0	0	0	0
............................................................TCAGGAGATATAACTCTAAGATTT.........................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................ATCTTAGGTTATGTTTTCTGAA......................................................	22	0	1	1.00	1	0	0	0	0	1	0
............................................................TCAGGAGATATAACTCTAAGA............................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTTAGGTTATGTTTTCTGAAC.....................................................	22	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTTAGGTTATTTTTTCTGA.......................................................	20	1	1	1.00	1	0	0	0	0	1	0
.................................................................................................AGCTTAGGTTATGTTTTCTGAA......................................................	22	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................TTTTAGGTTATGTTTTCTGAA......................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTTAGGTAATGTTTTCTGAA......................................................	21	1	1	1.00	1	0	1	0	0	0	0
.................................................................................................ATCTTAGGTTATGTTTTCTGAAC.....................................................	23	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTTAGGTTATGTTTACTGAA......................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................TGTTAGGTTATGTTTTGTGAAAA....................................................	23	3	3	0.33	1	1	0	0	0	0	0

CTGAATTTTTATACGGTTTACTAAGTTTATTTAATTTTTTTAAATGTACAGTCAGATCAGAGTCCTCTATATTGAGATTCTAAAACAATAATGTATTTAGAATCCAATACAAAAGACTTTGTTCCACCAAACCGCAGTCGTTTTATTTCAAATATTTATAAATAATTTATCAC ************************************..(((((((((.((.((((((((((((((.((((((((((((....))).))))))))))))))))))))))).)).)))....))))))*******************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V058 head
...................................TTTTATAAATGTACAGTCATACC...................................................................................................................	23	3	2	0.50	1	1

Species	Coordinate	ID	Alignment
droYak3	X:4178493-4178665 +	dya_119	GACT--------TAAAAAT---ATGCCAAATG----------------------------------------------ATTCAAATAAATTAA-AAAAATTTA--CATGTCAGTCTAG---------TCTCAGGAGATATAACTCT-AAGATTTTGTTATTA-CATAAATCT-TAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAA-AATAA-AGTTTA--------T--------AA--------------------ATATTTATTAAATA-----------------GTG
droEre2	scaffold_4690:1630358-1630527 -		TTAAA--------AAAAT----------------------------------------------------ATAAAGCCATGCTAGTGCAACAAAAAGAGTTTATGAATATCAAAATGACCTA--------GTGTATTGATTTTAAATAAATCA-ATCATTTT-CTTGAACAAAATAATA-TTAGTGCCTGCACGTAATAAT-----------------AA-AATATGATA-TTTTA--------GTCCACACAAT---------------ATATAGACAA-----------------GTA
droSec2	scaffold_4:2466005-2466159 +	dse_123	GAAT--------GAAAGGG-A----ACGAATATATCAAGT------------------------TAAAAAACGAAAT---------------------------------CATGCTAG---------ATCTTGGACAAATATCAAGTAGATTA-TTTTTATA-CATCAATTTATTGTTA-TTTGTCCTTGAACTTAATTGTTTTACAGCTGCAA-AAAAA-ATTGTGAATTTT--------------------------------------------TTT-----------------TAA
droSim2	x:3953607-3953754 -	dsi-mir-2582b	GCAAT--------TTTTTACAA---A--------------TATTAAGAATATTACAAATTATTA------------------------------------------------------CCATTCATATCCTGGAGAGTGTTCTTAATAGTCTG-TTATTATTACA-CAAACT-TTGGGAATACTTT-CGAGATATGATGGCATAACG-CTGCAA-AAATA-AGTATAAACATA------------------------------------------------------------------T
dm3	chrX:4259671-4259823 -		GCTATTTTTTCTGACAAAT---ATTACGAATG----------------------------ATTA------------------------------------------------------CCATTCATATCCTTGGAACAATTCCTAATAGAATG-TTATTATTACAACAATCT-TTAGCAAGACTTTCGAGATAAGGATGGCATAACG-CTGCAA-AAAAAAAATATAAAAATTT-----------------------------------------ACATA-----------------CTT
droTak1	scf7180000415394:1165149-1165311 +		CATA--------TGAAATTAAA---T--------------------------------------TGAATTAATCT---------------------------A--TA-ATCATTCATG---------TCTTCG-AAATGTAGACAGCAGCATT-TTTTTATA-AATAAATCTGTTGTCTATATT-TCTGAAACAAGATGATATTTTT-CAACAA-TCA------GTAGATTACCGAAATCATATAA--------------------ATATATAAAATATA-----------------ATT
droEle1	scf7180000491011:2115387-2115534 +		T-------------------------------------------------------------------------------------------------------------CATTCATG---------TCTTGGGAAGCATTTTCATTAGATTG-TTTTTTTT--ACCATTCTTTTGATAATGCTTTCCAAAACAAGATTGCATTACTTCTGCAA-ATAT-----GTATACATCTAC--------ATACATACAGTTTAAAAGAAATATATGTATAATTAA-----------------GTG
droRho1	scf7180000779334:419046-419147 +		TATA--------TGAAATTAAA---T--------------TATTAAAAAAG---------ATTA-----------------------------------------------------------------------------------------------------------------------------------TACAGTTTGTATTCAATCC-AATAA-AA--------TCCAA--------ATCCATCCAAT---------------AAAAAAATAAATGAAGCTCTTCATTTGAAG
droFic1	scf7180000453901:212936-213064 +		ACAAA--------C--------------------------------------------------TAAAGTAATCGCT---------------------------------CGTGCT----------GGTCTAATCACCATTGCTGGTAGGCTT-TTGTTTTA-AACAAAATTATCGGTGATGGTGTTTGGATTACGATGAGACTTTT-GCATCAGA---------TGGG-----------------------------------------TTACTCAAAA-----------------ATG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

GACT--------TAAAAAT---ATGCCAAATG----------------------------------------------ATTCAAATAAATTAA-AAAAATTTA--CATGTCAGTCTAG---------TCTCAGGAGATATAACTCT-AAGATTTTGTTATTA-CATAAATCT-TAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAA-AATAA-AGTTTA--------T--------AA--------------------ATATTTATTAAATA-----------------GTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGAAA............................................................................................................	22	1	32.00	32	1	4	17	5	0	0	4	0	0	1	0
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGA..............................................................................................................	20	1	18.00	18	1	2	9	1	0	0	5	0	0	0	0
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGAA.............................................................................................................	21	1	16.00	16	1	1	9	2	0	0	3	0	0	0	0
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGAAAA...........................................................................................................	23	1	8.00	8	0	3	4	1	0	0	0	0	0	0	0
.................................................................................................................................TCAGGAGATATAACTCT-AAGATT...................................................................................................................................................	23	1	8.00	8	0	1	7	0	0	0	0	0	0	0	0
.................................................................................................................................TCAGGAGATATAACTCT-AAGATC...................................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGAAT............................................................................................................	22	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................ATCT-TAGGTTATGTTTTCTGA..............................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................CT-TAGGTTATGTTTTCTGAAAA...........................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCAGGAGATATAACTCT-AAGATTT..................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATCT-TAGGTTATGTTTTCTGAA.............................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCAGGAGATATAACTCT-AAGA.....................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TCT-TAGGTTATGTTTTCTGAAC............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATCT-TAGGTTATGTTTTCTGAAC............................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TTAAA--------AAAAT----------------------------------------------------ATAAAGCCATGCTAGTGCAACAAAAAGAGTTTATGAATATCAAAATGACCTA--------GTGTATTGATTTTAAATAAATCA-ATCATTTT-CTTGAACAAAATAATA-TTAGTGCCTGCACGTAATAAT-----------------AA-AATATGATA-TTTTA--------GTCCACACAAT---------------ATATAGACAA-----------------GTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

GAAT--------GAAAGGG-A----ACGAATATATCAAGT------------------------TAAAAAACGAAAT---------------------------------CATGCTAG---------ATCTTGGACAAATATCAAGTAGATTA-TTTTTATA-CATCAATTTATTGTTA-TTTGTCCTTGAACTTAATTGTTTTACAGCTGCAA-AAAAA-ATTGTGAATTTT--------------------------------------------TTT-----------------TAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAAC...........................................................................................................	22	2	27.00	54	21	15	11	7
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAA............................................................................................................	21	2	11.00	22	4	13	0	5
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGA.............................................................................................................	20	2	3.50	7	2	3	0	2
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAAA...........................................................................................................	22	2	3.50	7	0	6	0	1
................................................................................................................................TCTTGGACAAATATCAAGTAGAT.....................................................................................................................................................	23	2	3.50	7	7	0	0	0
................................................................................................................................TCTTGGACAAATATCAAGTAGA......................................................................................................................................................	22	2	2.50	5	1	3	0	1
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAACT..........................................................................................................	23	2	2.50	5	1	3	0	1
...........................................................................................................................................................................TATTGTTA-TTTGTCCTTGAAC...........................................................................................................	21	2	1.50	3	2	1	0	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGT.............................................................................................................	20	2	1.00	2	0	2	0	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAAT...........................................................................................................	22	2	1.00	2	0	2	0	0
.........................................................................................................................................................................TTTATTGTTA-TTTGTCCTTGAA............................................................................................................	22	2	1.00	2	0	1	1	0
..................................................................................................................................TTGGACAAATATCAAGTAGATT....................................................................................................................................................	22	2	1.00	2	0	1	1	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAACA..........................................................................................................	23	2	1.00	2	0	0	1	1
............................................................................................................................................................................ATTGTTA-TTTGTCCTTGAAC...........................................................................................................	20	2	1.00	2	1	0	1	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAACTA.........................................................................................................	24	2	0.50	1	0	1	0	0
................................................................................................................................TCTTGGACAAATATCAAGT.........................................................................................................................................................	19	2	0.50	1	0	0	1	0
.........................................................................................................................................................................TTTATTGTTA-TTTGTCCTTGA.............................................................................................................	21	2	0.50	1	1	0	0	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAACC..........................................................................................................	23	2	0.50	1	0	1	0	0
..........................................................................................................................................................................TTATTGTTA-TTTGTCCTTGAAAA..........................................................................................................	23	2	0.50	1	0	1	0	0

droSim2

GCAAT--------TTTTTACAA---A--------------TATTAAGAATATTACAAATTATTA------------------------------------------------------CCATTCATATCCTGGAGAGTGTTCTTAATAGTCTG-TTATTATTACA-CAAACT-TTGGGAATACTTT-CGAGATATGATGGCATAACG-CTGCAA-AAATA-AGTATAAACATA------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAG.............................................................................................................	22	1	1810.00	1810	0	2	0	4	424	6	41	49	42	31	858	12	1	340	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGA..............................................................................................................	21	1	549.00	549	0	0	0	1	167	3	7	19	10	8	121	0	0	213	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-..................................................................................................................................................	23	1	327.00	327	0	6	0	1	234	2	1	0	6	0	77	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCT....................................................................................................................................................	22	1	232.00	232	0	0	0	1	155	2	0	0	0	0	66	8	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-T.................................................................................................................................................	24	1	223.00	223	0	1	0	1	143	3	5	0	3	2	65	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-C................................................................................................................	19	1	159.00	159	0	0	0	0	140	0	0	0	0	0	19	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATA........................................................................................................................................................	18	1	159.00	159	0	0	0	0	143	1	0	0	0	0	15	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAG.......................................................................................................................................................	19	1	155.00	155	0	0	0	0	150	4	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGA............................................................................................................	22	1	152.00	152	0	0	0	2	36	0	8	4	4	4	83	0	0	11	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CG...............................................................................................................	20	1	140.00	140	0	0	0	0	60	3	0	1	0	0	29	0	0	47	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAG.............................................................................................................	21	1	128.00	128	0	0	0	0	47	0	0	3	2	0	32	0	0	44	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTC.....................................................................................................................................................	21	1	101.00	101	0	0	0	0	93	2	0	0	0	0	6	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-.................................................................................................................	18	1	73.00	73	0	0	0	0	63	2	0	0	0	0	8	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGA............................................................................................................	23	1	66.00	66	0	3	1	0	16	0	1	0	4	0	25	1	0	15	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGT......................................................................................................................................................	20	1	50.00	50	0	0	0	0	42	1	0	0	0	0	7	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGAG.............................................................................................................	17	1	31.00	31	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACT....................................................................................................................	16	1	31.00	31	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGA..............................................................................................................	20	1	26.00	26	0	0	0	0	14	0	0	1	1	0	5	0	0	5	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-C................................................................................................................	18	1	20.00	20	0	0	0	0	13	2	0	0	0	0	5	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGAA...........................................................................................................	23	1	14.00	14	0	1	0	0	0	0	0	0	1	0	9	0	0	3	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGT............................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	3	0	0	11	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTT...................................................................................................................	17	1	13.00	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
...........................................................................................................................................................................T-TTGGGAATACTTT-CGAG.............................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CG...............................................................................................................	19	1	12.00	12	0	0	0	0	9	1	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAA.............................................................................................................	22	1	11.00	11	0	0	0	0	0	0	0	1	0	0	8	0	0	2	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAT.............................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	6	0	0	4	0	0	0
..........................................................................................................................................GTTCTTAATAGTCTG-T.................................................................................................................................................	16	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGAA...........................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	5	0	0	2	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGT............................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	4	0	1	2	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-TT................................................................................................................................................	25	1	6.00	6	0	0	0	0	2	0	2	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................GGAGAGTGTTCTTAATAGTCTG-..................................................................................................................................................	22	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTGTTCTTAATAGTCTG-..................................................................................................................................................	17	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
......................................................................................................................................................................CAAACT-TTGGGAATACTTT-CGAG.............................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0
........................................................................................................................................GTGTTCTTAATAGTCTG-T.................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTA...........................................................................................................................................................	15	2	4.50	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
..............................................................................................................................................................................TGGGAATACTTT-CGAG.............................................................................................................	16	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................GAGTGTTCTTAATAGTCTG-..................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATAC.....................................................................................................................	15	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGAGA............................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................................................................GGGAATACTTT-CGAGA............................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGAT...........................................................................................................	23	1	3.00	3	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAAT.........................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................ACT-TTGGGAATACTTT-CGAG.............................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGC............................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
......................................................................................................................................................................CAAACT-TTGGGAATACTTT-CGA..............................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGG............................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGAGATATGATGGCA..................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGG............................................................................................................	23	1	2.00	2	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGT..............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-A.................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
.........................................................................................................................................TGTTCTTAATAGTCTG-T.................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGATA..........................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGTGTTCTTAATAGTCTG-T.................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................T-TTGGGAATACTTT-CGAGA............................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................GTGTTCTTAATAGTCT....................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACT....................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-TA................................................................................................................................................	25	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCA....................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................CAAACT-TTGGGAATACTTT-CG...............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................GTTCTTAATAGTCTG-..................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-C.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-TTAAA.............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAC.............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CG...............................................................................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................TGGGAATACTTT-CGAGA............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................AGAGTGTTCTTAATAGTCTG-T.................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................GAGTGTTCTTAATAGTCT....................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAA..........................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................AGTGTTCTTAATAGTCTG-..................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTG-TTA...............................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGGA...........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGC..............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTA-..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................AGTGTTCTTAATAGTCT....................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-CGAGATA..........................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGGG...........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGA..............................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................GAGTGTTCTTAATAGTCTG-T.................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGTT.............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTT-C.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CGAGGGT..........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................T-TTGGGAATACTTT-CGA..............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-CA...............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGGAGAGTGTTCTTAATAGTCTA-A.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................CTGGAGAGTGTTCTTAATAG.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GGAGAGTGTTCTTAATAGTCT....................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AACT-TTGGGAATACTTT-.................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACG....................................................................................................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGAA.............................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................AAACT-TTGGGAATACTTT-GAG..............................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATACTTT-CGC..............................................................................................................	16	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

GCTATTTTTTCTGACAAAT---ATTACGAATG----------------------------ATTA------------------------------------------------------CCATTCATATCCTTGGAACAATTCCTAATAGAATG-TTATTATTACAACAATCT-TTAGCAAGACTTTCGAGATAAGGATGGCATAACG-CTGCAA-AAAAAAAATATAAAAATTT-----------------------------------------ACATA-----------------CTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................CTTTCGAGATAAGGATGG....................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCAA-AAAAAAAATATAAAA......................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTTCTGACAAAT---ATTACCC...............................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTCGAGATAAGGATC.....................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droTak1

CATA--------TGAAATTAAA---T--------------------------------------TGAATTAATCT---------------------------A--TA-ATCATTCATG---------TCTTCG-AAATGTAGACAGCAGCATT-TTTTTATA-AATAAATCTGTTGTCTATATT-TCTGAAACAAGATGATATTTTT-CAACAA-TCA------GTAGATTACCGAAATCATATAA--------------------ATATATAAAATATA-----------------ATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-------------------------------------------------------------------------------------------------------------CATTCATG---------TCTTGGGAAGCATTTTCATTAGATTG-TTTTTTTT--ACCATTCTTTTGATAATGCTTTCCAAAACAAGATTGCATTACTTCTGCAA-ATAT-----GTATACATCTAC--------ATACATACAGTTTAAAAGAAATATATGTATAATTAA-----------------GTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TATA--------TGAAATTAAA---T--------------TATTAAAAAAG---------ATTA-----------------------------------------------------------------------------------------------------------------------------------TACAGTTTGTATTCAATCC-AATAA-AA--------TCCAA--------ATCCATCCAAT---------------AAAAAAATAAATGAAGCTCTTCATTTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAAA--------C--------------------------------------------------TAAAGTAATCGCT---------------------------------CGTGCT----------GGTCTAATCACCATTGCTGGTAGGCTT-TTGTTTTA-AACAAAATTATCGGTGATGGTGTTTGGATTACGATGAGACTTTT-GCATCAGA---------TGGG-----------------------------------------TTACTCAAAA-----------------ATG	Size	Hit Count	Total Norm	Total
No Reads

dya_119

X:4178543-4178615 +

Known Ortholog

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.0	-32.8	-32.8