dya_1180

Name	Class	Family	Strand
XDMR_DM	Unknown	Unknown	-
SAR_DM	Satellite	Satellite	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCAAAAATTGAAAAAAATTTGAAAAAAATAGAATTATTTTTTGAAAGCACAGTTTGATAGGAAATTTTATTACGAACTCAACGAGGTGTGACATTCCATATTCGGACCAATATTTCGAATGCTGTGATGAAAATACTGATATTTATAGTCGCAAAGAACAATTAAAATGAAAACAAACAAAATATAATTGATTCTTTGAAGGTTCGTGGTGCGCCCGCCATCGCCATCGTTGGCTGCCTCTCCCTCGCCGT ************************************************(((((((((((....)))))..))))))...((((((((.....(((......)))...))))))))...(((((((...............)))))))..(((((((((((((....................)))))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M056 embryo	M043 female body
.................................................................................................................................................................................................................TTCGCCCGCCATCGCCATCGTTGGCC................	26	2	1	1.00	1	1	0
.....................................................................................................................................................................................................GCAGGTTCGTGGTGCGCCCGCC................................	22	1	1	1.00	1	1	0
..............................................................................................................................................................................................................................GCCATCGTTGGCTGCCTCTCCCTC.....	24	0	1	1.00	1	0	1
................................................................................................................................................................................................................................CATCGTTGGCTGCCTCTCCCT......	21	0	1	1.00	1	0	1
.................................................................................................................................................................................................................................ATCGTTGGCTGCCTCTCCCT......	20	0	1	1.00	1	1	0
....................................TTCTTTGAAAGCACAGTTTGATAGGAA............................................................................................................................................................................................	27	1	2	0.50	1	1	0
...............................................................................................................................................................................AACAGAATATAATCGTTTCT........................................................	20	3	19	0.05	1	0	1

AGTTTTTAACTTTTTTTAAACTTTTTTTATCTTAATAAAAAACTTTCGTGTCAAACTATCCTTTAAAATAATGCTTGAGTTGCTCCACACTGTAAGGTATAAGCCTGGTTATAAAGCTTACGACACTACTTTTATGACTATAAATATCAGCGTTTCTTGTTAATTTTACTTTTGTTTGTTTTATATTAACTAAGAAACTTCCAAGCACCACGCGGGCGGTAGCGGTAGCAACCGACGGAGAGGGAGCGGCA ************************************************(((((((((((....)))))..))))))...((((((((.....(((......)))...))))))))...(((((((...............)))))))..(((((((((((((....................)))))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V052 head	V120 male body	M026 head
.............................................................................................................................................................................GTTTGTTTGATATTGACTAA..........................................................	20	2	5	1.40	7	4	0	2	1
...................................................................................................................................................................................................................................GCAGCCGACAGAGAGGGAGCGA..	22	3	2	0.50	1	0	1	0	0
.......................................................................................................................................................GTCTCTTGTTAATTTTGCTTTT..............................................................................	22	2	2	0.50	1	1	0	0	0
...........................................................................................................................................................................TAGTTTGTTTGATATTGACTAA..........................................................	22	3	6	0.50	3	3	0	0	0
..................................................................................................................AGCTTACGACACTACTTTTATGACT................................................................................................................	25	0	12	0.08	1	1	0	0	0
....................................................................TAATGTTTGAGTTGCTCCACACTGTAA............................................................................................................................................................	27	1	13	0.08	1	1	0	0	0
...............................................GTGTCAAACTATCCTTTAAA........................................................................................................................................................................................	20	0	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droYak3	3R:28218278-28218528 -	dya_1180	TCAAAAA------TTGAAAA-AAATTT-G-AAAAAAATAGAATTATTTTTTGAAAGCACAGTTTGATAGGAAATT--TTATTACGAACTCAACGAGGTGTGACATTCCATATTCGGACCAATATTTCGAAT-GCTGTGATG------AAAA-TACT------GATATTTATAGTC--------GCA-AAGA-A-----CAATTAAAATGAAAACAAAC---------------------------------------------------------------------------------AAAATATAATT-GAT-TCTTTGAAGGTTCGTGGTGCGCCCGCCATCGCCATCGTTGGCTGCCTCTCCCTCG----------CC----GT
droEre2	scaffold_4644:887783-888024 +		ACAAAAT------TTGCAAA-AAAT-GGC-CAAAA-ATTGAATTCCTATTTTTTGATACAGTTCGATTGGAAATT--TAGATACGAACTCAACGATGTATGACATTCCACATTCAGACAATTATTTTTAAA-GTTTTGCCC------AAAA-AACT------GATTATTTTATGT---------CG-GAAA-A-----TCGGAAAAACGACTTTTAAC---AAA-------------------------TGTTTGATATTTTCGATAG----------------------------------------------------GAATTTTTATCATAAGCATCTTAT----------TACCAACGCTAACCGT----------CC----CT
droSec2	scaffold_35:186783-187040 +		TCAAAAT------TTGCAAA-AATT-G-C-GAAAAAATAAAATTCCCAAAATTGAATCCAAATCGATTGGGAATAAATAAAAACAAGTTCAACGAGGTATGAGAGTCCATTTTTGGACTATTATTTTCCAT-TTTATGAAC------AAAA-TACG------CCAAAT------C--ATCTTCT-A--G-AATT-------------------GTGAGCACAAAACACAAATTTACTGAAAACTTCAATTGATCGATATTTTCAAAT-----------------------------------------------------------TGAAA--TTGCGTTCCACACCTATCGATGTTTGCAATCCACTCG----------CG----GT
droSim2	x:9624327-9624528 +		TCAAAAT------TAGCAAA-AAAT-GGT-CAAAAAATAGAATTCGCATTTTTGAACACAGTTTGATTGGAAATT--TAATTACGAACTCAACGATGTATAACATTCCATATTCAGACAATTATTTTTAAT-GTTGTGGCA------AAAA-AACT------GATTATTTTAAGA---------CC-GAAA-T-----CTGGGAAAACGGATTCTAGC---CAA-------------------------CATTAA----------------------------------------------------ATAT--A-------------------------------------------------TTTTTGA----------AG----GT
dm3	chrX:8424511-8424721 -		TCAAAAT------TTGCAAAAAAAT-TGC-AAAAAAATAAAATTCCAAAATTTGAATGCAAATCGATTGGAATTT--AAATAACAAGCTCAACGAGGTATGACATTCCAAATTTGAACCATTATTTCCAAT-GTTATGATC------AAAA-TACC------GATTATTTTCTAT-------TT-C-GAAA-A-----TCAGAC--------------CAAAAAA------------------------AAAAGG-----------------------------------------------GTTTAGTT-TGT------------------------------------------ACACTTATTGTTGG----------TTGTGAGC
droEug1	scf7180000409672:3131791-3132003 +		CAAAAATTAGTTTTTGCCAA-AAAT-GAC-CAAAAATGTACATTTAAAGGTGAGAGCACAGTTATGTTGGAAATT--TAATTACAAACTCATCGAGATATGACATTCCATATTCCGACCATTTTTGACAAT-GTTATGGGT------AAAA-TATT------GATTTCTTTGGTA------------ATAA-A-----TGGAAATAAAGATTTTAAAA---TAA-------------------------CATTTG----------------------------------------------------CAAT--ATTTTT---------------------------------------------TCTAGG-----------TTTATAG
droBia1	scf7180000302428:2701492-2701702 -		TCAAATT------TTACGAA-AATG-GGT-CAAAAATAAAATTTGTCAGGTGTGAATGCCACTTGATAGGAAATT--TTATTACGAGTTCGACGAGGTATGACATTCCATTTTTGGGACATTACTTTAATT-GATACGCCG------AAAA-TACT------GATTGATTTGGGG---------TA-AAAA-A-----CTATGACCTTGTAT-TTAGC---AAA-------------------------AAAATGATATTT----------------------------------------------------T-TCTT--------------------------------------TGACCTTTTTTGG----------------TG
droTak1	scf7180000415169:892851-893055 +		TCATTTT------TTGCAAA-AAAT-GGA-CAAAATTAAAAATTTTCAGGTTGAAATGCCAATCGATTGGGAATT--TAATTACGAGCTCAACGAGGTGTGACATTCTATATTTGGACCATTATTTCCATT-GTTCTGGTC------AAAA-TACT------GGTTATTTTTGGG-------G-TG-GAAA-A-----TCAGAATCTTGATTTTTGGT---AAA-------------------------AATTTG----------------------------------------------------ATTT--ATTTTT---------------------------------------------TATAGA----------------TT
droEle1	scf7180000491249:2639595-2639797 -		TCATTTT------TTTCGAA-ATTT-GAT-CCAACCCAAAATTTTTGAGCTGTGAATGCCAGTTTGTTGGAAATT--TTACGACGAATTCAACGAGGTATGGCATTCCAACATTAAACCATTATATTCCATAGTTTTGATC------AAAA--ATTGCAATTTAAACT------C--ATATTTT-CGAATA-G-----CTAGAAACTT-------------TAAA-ATAAAT-------------------------------------------------------------------TAATTTGAACC-GAT-TC----------------------------------------------------------------T----TT
droRho1	scf7180000779364:43945-44161 -		TCTTTTT------TTCG-AA-ATTC-GGACC-AAAAAAAATAT-TTTTGCTGATAATACCAATGAATTGGAAATT--TTGTAACGAGTTCAACGAGGTATGACATTCCAAGATCTGACCAGTATTTCCAAGGGTTTTGATC------AAAAAAACT------GAAAAATTTATCAGAATTTTCC-A--G-AATT-------------------TTTGCCATTAAA-AAAAATTTATTGAAAA-----------------------------------------------------------------GCC-AAT-TTTT---------------------------------------------TAAGGG----------TTTTTTGT
droFic1	scf7180000453858:777187-777373 -		TCATTTT------TTTGCAAAAAAT-GGC-CAAAA-ATAAAATTTTTTGATTTGAATGCCAATTGATTGCAAATG--TTTTTACGAGCTCAGAAATATGTTACATTCCT-----GAACCATTTTTTCAACT-AATATGGCC------TAAA-TACA------GATTTTTCCA----------------ACT-AATAAACCG----------------C---AAA-------------------------AATACG----------------------------------------------------ATTT--T-TTTT---------------------------------------------TGAGGG----------TTTTTCGT
droKik1	scf7180000301810:47010-47079 +		TTAAAAT------TCTAAAA-AAAT-TGA-AAAAAAAATTAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAATTGTCCAATTAAGTAAGCAGATTTGT----TA
droAna3	scaffold_13337:17189268-17189489 +		AAAAAAT------TTGAAAA-AAAATT-A-AAAAAAATTG-ATTTCCTGGTTTTGAAGCAGGTTTATAGAGGATC--TTTCTACAAATCGTTTAAGGTATGCCGCTTCTGAATCGGATGATTATTGGCAAA-GTTATGGCCTTCACCGGGG--GCCATAA--------------------------------------TG--------GGCTCCCCAT---GCA-------------------------TTTTTAAAATTCT-G-CAAGGGATACCATCAAAAAATTTTGAAAACAAACAAAAAAAAAT-----------------------------------------------------------------------TG----AT
droBip1	scf7180000396412:779905-780020 +		GAAAAAT------TCGAAAA-AAAT-CTT-AAAAAAATATGCTTTCCAGATTTAAATGCAGTTTCATAGATAATC--GTTTAACGATTCCAGAACTATATGCCTTTTAAGGATCGAATAAATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:4511758-4511809 -		AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGAGGAGCCCCCGCCATTGCCATTGTGGGTTGCCTGTCGCTGG----------CC----GT
droPer2	scaffold_19:210529-210580 -		AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGAGGAGCCCCCGCCATTGCCATTGTGGGTTGCCTGTCGCTGG----------CC----GT
droWil2	scf2_1100000006624:544-689 -		TTAAAAC------TTGTAAA-ACAT-GGC-CAAAAAATTTAATTTCCATTGTTGAACACAGTTTGATTGGAAATT--TTATTACGAGCTCAACGAGGTACGGCAATCCATATTCAGACAATTATTTTTAAA-GTTGTGCCG------TAAA-AACT------GATTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13047:12695518-12695575 -		CTTTAT-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTACGGGGCGCTCCGGCCATTGCCATTGTGGGCTGCCTCTCGCTGG----------CC----GT
droMoj3	scaffold_6540:29144593-29144651 +		TCTTTGT------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGGGCGCTCCGGCTATTGCCATTGTGGGCTGCCTCTCGCTGG----------CC----GT
droGri2	scaffold_15074:2025846-2025909 +		TTACTTT------TTTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGAGGGGCACCGGCGATTGCCATTGTCGGCTGCCTTTCCCTGG----------CC----GT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

TCAAAAA------TTGAAAA-AAATTT-G-AAAAAAATAGAATTATTTTTTGAAAGCACAGTTTGATAGGAAATT--TTATTACGAACTCAACGAGGTGTGACATTCCATATTCGGACCAATATTTCGAAT-GCTGTGATG------AAAA-TACT------GATATTTATAGTC--------GCA-AAGA-A-----CAATTAAAATGAAAACAAAC---------------------------------------------------------------------------------AAAATATAATT-GAT-TCTTTGAAGGTTCGTGGTGCGCCCGCCATCGCCATCGTTGGCTGCCTCTCCCTCG----------CC----GT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................GCCATCGTTGGCTGCCTCTCCCTC...................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CATCGTTGGCTGCCTCTCCCT....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ATCGTTGGCTGCCTCTCCCT....................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

ACAAAAT------TTGCAAA-AAAT-GGC-CAAAA-ATTGAATTCCTATTTTTTGATACAGTTCGATTGGAAATT--TAGATACGAACTCAACGATGTATGACATTCCACATTCAGACAATTATTTTTAAA-GTTTTGCCC------AAAA-AACT------GATTATTTTATGT---------CG-GAAA-A-----TCGGAAAAACGACTTTTAAC---AAA-------------------------TGTTTGATATTTTCGATAG----------------------------------------------------GAATTTTTATCATAAGCATCTTAT----------TACCAACGCTAACCGT----------CC----CT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................TATTTTATGT---------CG-GAAA-A-----TCGGA.........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0

droSec2

TCAAAAT------TTGCAAA-AATT-G-C-GAAAAAATAAAATTCCCAAAATTGAATCCAAATCGATTGGGAATAAATAAAAACAAGTTCAACGAGGTATGAGAGTCCATTTTTGGACTATTATTTTCCAT-TTTATGAAC------AAAA-TACG------CCAAAT------C--ATCTTCT-A--G-AATT-------------------GTGAGCACAAAACACAAATTTACTGAAAACTTCAATTGATCGATATTTTCAAAT-----------------------------------------------------------TGAAA--TTGCGTTCCACACCTATCGATGTTTGCAATCCACTCG----------CG----GT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droSim2

TCAAAAT------TAGCAAA-AAAT-GGT-CAAAAAATAGAATTCGCATTTTTGAACACAGTTTGATTGGAAATT--TAATTACGAACTCAACGATGTATAACATTCCATATTCAGACAATTATTTTTAAT-GTTGTGGCA------AAAA-AACT------GATTATTTTAAGA---------CC-GAAA-T-----CTGGGAAAACGGATTCTAGC---CAA-------------------------CATTAA----------------------------------------------------ATAT--A-------------------------------------------------TTTTTGA----------AG----GT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................CACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	20	20	22.70	454	0	0	0	0	148	296	0	0	7	3	0	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	23	20	14.00	280	0	0	0	0	0	87	1	2	87	0	103	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TT.....................................................................................................................................................................................................................................................................................................................	24	20	4.35	87	0	0	0	0	0	0	0	0	50	0	37	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	26	20	2.75	55	0	0	0	0	0	0	0	0	7	3	45	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	25	20	2.55	51	0	0	0	0	0	0	0	0	3	1	47	0	0	0	0	0	0
.........................................................ACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	18	20	2.35	47	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	25	20	1.95	39	0	0	0	0	0	0	3	3	18	10	4	0	1	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	24	20	1.75	35	0	0	0	0	0	28	0	0	0	2	3	0	2	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	25	20	1.60	32	0	0	1	1	0	0	12	7	0	2	8	0	1	0	0	0	0
...............................................ATTTTTGAACACAGTTTGAT.................................................................................................................................................................................................................................................................................................................................	20	20	1.45	29	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATTAT........................................................................................................................................................................................................................................................................	19	10	1.40	14	0	0	0	0	7	7	0	0	0	0	0	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	27	20	1.15	23	0	0	1	2	0	0	2	0	0	4	12	0	2	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	22	20	1.05	21	0	0	0	0	0	0	0	1	5	0	15	0	0	0	0	0	0
.................................................................................TACGAACTCAACGATGTATAACATT..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCAGACAATTATTTTTAAT-GT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TACGAACTCAACGATGTATAACATTC.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................ATAGAATTCGCATTTTTGAACACAGTT.....................................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................TCAGACAATTATTTTTAAT-GTT.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................AATAGAATTCGCATTTTTGAACACAGTT.....................................................................................................................................................................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
........................T-GGT-CAAAAAATAGAATTCGCATTTT................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	24	20	0.90	18	0	0	0	0	0	0	6	1	0	0	10	0	1	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--TAATTA.................................................................................................................................................................................................................................................................................................................	25	20	0.90	18	0	0	0	0	0	0	1	4	8	5	0	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATTATTT......................................................................................................................................................................................................................................................................	21	9	0.78	7	0	0	0	0	0	6	0	0	0	0	1	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	26	20	0.75	15	0	0	0	0	0	0	0	2	11	0	1	0	1	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	0	2	0	0	0	1	0	4	0	7	0	0	0	0	0	0
.......................................................................................................ATTCCATATTCAGACAATTAT........................................................................................................................................................................................................................................................................	21	10	0.70	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	20	20	0.70	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATTATTTT.....................................................................................................................................................................................................................................................................	22	9	0.67	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATTATTTTTAA..................................................................................................................................................................................................................................................................	25	6	0.67	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
...........................................TCGCATTTTTGAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--TT.....................................................................................................................................................................................................................................................................................................................	21	20	0.65	13	0	0	0	0	0	0	0	0	7	6	0	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	25	20	0.65	13	0	0	1	0	0	0	1	0	1	0	10	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATTATTTTT....................................................................................................................................................................................................................................................................	23	8	0.63	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................CATTCCATATTCAGACAATTA.........................................................................................................................................................................................................................................................................	21	13	0.62	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	21	20	0.60	12	0	0	0	0	0	0	0	0	10	2	0	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	0	1	0	0	10	0	0	0	0	0	0
..............................CAAAAAATAGAATTCGCATTTTTGAA............................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	26	20	0.50	10	0	0	0	0	0	0	0	1	3	3	2	0	1	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--TAATTACGA..............................................................................................................................................................................................................................................................................................................	28	20	0.45	9	0	0	0	0	0	0	0	3	5	1	0	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	3	2	1	0	2	0	1	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	26	20	0.40	8	0	0	0	0	0	0	1	1	1	0	5	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	23	20	0.40	8	0	0	0	0	0	0	0	1	2	1	4	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0
.........................................................ACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	19	20	0.40	8	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TTG....................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...........................................................AGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	16	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	1	4	0	2	0	0	0	0
.....................................TAGAATTCGCATTTTTGAACACAGT......................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................TATAACATTCCATATTCAGACAATTATT.......................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	18	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	0	0	3	2	1	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	1	0	3	2	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATT--TT.....................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.............................................................TTTGATTGGAAATT--TAATTACGAACT...........................................................................................................................................................................................................................................................................................................	26	9	0.22	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTG...............................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AACACAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0
.........................................................ACAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0
..........................................................CAGTTTGATTGGAAATT--TT.....................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TAATT..................................................................................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--TAATT..................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TAATTA.................................................................................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAAAA..........................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TT.....................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
...............................................................TGATTGGAAATT--TAATTACGAACTC..........................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TTTGATTGGAAATT--TAATTACGAACTC..........................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................GAAATT--TAATTACGA..............................................................................................................................................................................................................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAATA--.......................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TTT....................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................GTTTGATTGGAAATT--.......................................................................................................................................................................................................................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................ACACAGTTTGATTGGAAATT--TAATTACGA..............................................................................................................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................TTTTGAACACAGTTTGATT................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................AACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................TTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGATTGG..............................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
............................................................GTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................ACACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................GCA------AAAA-AACT------GATTATTT..........................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................TTGTGGCA------AAAA-AACT------GAT...............................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................TGGAAATT--TAATTACGAACTC..........................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................GCATTTTTGAACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	31	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................TAATTACGAACTCAACGA.....................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................TCCATATTCAGACAATT..........................................................................................................................................................................................................................................................................	17	15	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................TGTGGCA------AAAA-AACT------G.................................................................................................................................................................................................................................	16	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGG..............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................ACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--TAAG...................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................ACAGTTTGATTGGAAATT--TA.....................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................AACACAGTTTGATTGGAAATT--T......................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................GTTTGATTGGAAATT--TTT....................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................TTTGAACACAGTTTGATTGGAAATT--TTG....................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................CATTTTTGAACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................TGAACACAGTTTGATTGGAAATT--TAAA...................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................TTTTTGAACACAGTTTGAT.................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................GAACACAGTTTGATTGGAAATT--C......................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................CATTCCATATTCAGACA.............................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TTCCATATTCAGACA.............................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................CACAGTTTGATTGGAA............................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................CAGTTTGATTGGAAATT--TAA....................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................CATTTTTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................AACACAGTTTGATTGGAAATT--TAAT...................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................CACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................AACACAGTTTGATTGGA.............................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

dm3

TCAAAAT------TTGCAAAAAAAT-TGC-AAAAAAATAAAATTCCAAAATTTGAATGCAAATCGATTGGAATTT--AAATAACAAGCTCAACGAGGTATGACATTCCAAATTTGAACCATTATTTCCAAT-GTTATGATC------AAAA-TACC------GATTATTTTCTAT-------TT-C-GAAA-A-----TCAGAC--------------CAAAAAA------------------------AAAAGG-----------------------------------------------GTTTAGTT-TGT------------------------------------------ACACTTATTGTTGG----------TTGTGAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................TTCCAAT-GTTATGATC------AAAA-TACC------GAT...............................................................................................................................................................................................................................	27	3	2.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TCCAAT-GTTATGATC------AAAA-TACC------GAT...............................................................................................................................................................................................................................	26	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACAAGCTCAACGAGGTATGA..............................................................................................................................................................................................................................................................................................	20	4	1.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCCAAAATTTGAATGCAAATCGAT.................................................................................................................................................................................................................................................................................................................................	24	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AATCGATTGGAATTT--AAATAACAAGCTC..........................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAAGCTCAACGAGGTATGACATT..........................................................................................................................................................................................................................................................................................	23	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TTCCAAAATTTGAATGCAAATCGATTG...............................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TTCCAAAATTTGAATGCAAATCGAT.................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AAGCTCAACGAGGTATGACAT...........................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TTGGAATTT--AAATAACAA..............................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T-GTTATGATC------AAAA-TACC------GAT...............................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TATTTCCAAT-GTTATGATC------A................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCTCAACGAGGTATGACAT...........................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CAAATCGATTGGAATTT--AAATAACAAAA............................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTTCCAAT-GTTATGATC------AAAA-TACC------..................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AATGCAAATCGATTGGAATTT--.......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGCAAATCGATTGGAATTT--AA.....................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCTCAACGAGGTATGACATTC.........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................AAATTTGAATGCAAATCGATTGG..............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CAAAAATTAGTTTTTGCCAA-AAAT-GAC-CAAAAATGTACATTTAAAGGTGAGAGCACAGTTATGTTGGAAATT--TAATTACAAACTCATCGAGATATGACATTCCATATTCCGACCATTTTTGACAAT-GTTATGGGT------AAAA-TATT------GATTTCTTTGGTA------------ATAA-A-----TGGAAATAAAGATTTTAAAA---TAA-------------------------CATTTG----------------------------------------------------CAAT--ATTTTT---------------------------------------------TCTAGG-----------TTTATAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAAATT------TTACGAA-AATG-GGT-CAAAAATAAAATTTGTCAGGTGTGAATGCCACTTGATAGGAAATT--TTATTACGAGTTCGACGAGGTATGACATTCCATTTTTGGGACATTACTTTAATT-GATACGCCG------AAAA-TACT------GATTGATTTGGGG---------TA-AAAA-A-----CTATGACCTTGTAT-TTAGC---AAA-------------------------AAAATGATATTT----------------------------------------------------T-TCTT--------------------------------------TGACCTTTTTTGG----------------TG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCATTTT------TTGCAAA-AAAT-GGA-CAAAATTAAAAATTTTCAGGTTGAAATGCCAATCGATTGGGAATT--TAATTACGAGCTCAACGAGGTGTGACATTCTATATTTGGACCATTATTTCCATT-GTTCTGGTC------AAAA-TACT------GGTTATTTTTGGG-------G-TG-GAAA-A-----TCAGAATCTTGATTTTTGGT---AAA-------------------------AATTTG----------------------------------------------------ATTT--ATTTTT---------------------------------------------TATAGA----------------TT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCATTTT------TTTCGAA-ATTT-GAT-CCAACCCAAAATTTTTGAGCTGTGAATGCCAGTTTGTTGGAAATT--TTACGACGAATTCAACGAGGTATGGCATTCCAACATTAAACCATTATATTCCATAGTTTTGATC------AAAA--ATTGCAATTTAAACT------C--ATATTTT-CGAATA-G-----CTAGAAACTT-------------TAAA-ATAAAT-------------------------------------------------------------------TAATTTGAACC-GAT-TC----------------------------------------------------------------T----TT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTTTTT------TTCG-AA-ATTC-GGACC-AAAAAAAATAT-TTTTGCTGATAATACCAATGAATTGGAAATT--TTGTAACGAGTTCAACGAGGTATGACATTCCAAGATCTGACCAGTATTTCCAAGGGTTTTGATC------AAAAAAACT------GAAAAATTTATCAGAATTTTCC-A--G-AATT-------------------TTTGCCATTAAA-AAAAATTTATTGAAAA-----------------------------------------------------------------GCC-AAT-TTTT---------------------------------------------TAAGGG----------TTTTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCATTTT------TTTGCAAAAAAT-GGC-CAAAA-ATAAAATTTTTTGATTTGAATGCCAATTGATTGCAAATG--TTTTTACGAGCTCAGAAATATGTTACATTCCT-----GAACCATTTTTTCAACT-AATATGGCC------TAAA-TACA------GATTTTTCCA----------------ACT-AATAAACCG----------------C---AAA-------------------------AATACG----------------------------------------------------ATTT--T-TTTT---------------------------------------------TGAGGG----------TTTTTCGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTAAAAT------TCTAAAA-AAAT-TGA-AAAAAAAATTAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAATTGTCCAATTAAGTAAGCAGATTTGT----TA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAAAAAT------TTGAAAA-AAAATT-A-AAAAAAATTG-ATTTCCTGGTTTTGAAGCAGGTTTATAGAGGATC--TTTCTACAAATCGTTTAAGGTATGCCGCTTCTGAATCGGATGATTATTGGCAAA-GTTATGGCCTTCACCGGGG--GCCATAA--------------------------------------TG--------GGCTCCCCAT---GCA-------------------------TTTTTAAAATTCT-G-CAAGGGATACCATCAAAAAATTTTGAAAACAAACAAAAAAAAAT-----------------------------------------------------------------------TG----AT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................TGATTATTGGCAAA-GTTATG..........................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................GAAAACAAACAAAAAAAAA................................................................................	19	6	0.17	1	0	1	0	0	0	0
.............................................................................................................GAATCGGATGATTATTGGC....................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droBip1

GAAAAAT------TCGAAAA-AAAT-CTT-AAAAAAATATGCTTTCCAGATTTAAATGCAGTTTCATAGATAATC--GTTTAACGATTCCAGAACTATATGCCTTTTAAGGATCGAATAAATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGAGGAGCCCCCGCCATTGCCATTGTGGGTTGCCTGTCGCTGG----------CC----GT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................TGGGTTGCCTGTCGCTGG----------CC----G.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTGGGTTGCCTGTCGCTGG----------C.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGAGGAGCCCCCGCCATTGCCATTGTGGGTTGCCTGTCGCTGG----------CC----GT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................ATTGCCATTGTGGGTTGCCT..........................	20	1	1.00	1	0	0	1	0	0	0

droWil2

TTAAAAC------TTGTAAA-ACAT-GGC-CAAAAAATTTAATTTCCATTGTTGAACACAGTTTGATTGGAAATT--TTATTACGAGCTCAACGAGGTACGGCAATCCATATTCAGACAATTATTTTTAAA-GTTGTGCCG------TAAA-AACT------GATTATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................CACAGTTTGATTGGAAATT--TTATTA.................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	6	0
........................................................CACAGTTTGATTGGAAATT--TTATTACGA..............................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	3	0
.....................................................GAACACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	3	0
........................................................CACAGTTTGATTGGAAATT--TTATT..................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0
.................................................................................TACGAGCTCAACGAGGTACGGC.............................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
.....................................................GAACACAGTTTGATTGGAAATT--TTA....................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.........................................................ACAGTTTGATTGGAAATT--TTA....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................................................CACAGTTTGATTGGAAATT--TTAA...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................................CACAGTTTGATTGGAAATT--TTAT...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................................CACAGTTTGATTGGAAATT--TTA....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........................................................CACAGTTTGATTGGAAAT..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................TATTACGAGCTCAACGAGGT..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................TGTTGAACACAGTTTGATTGGAAA...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0

droVir3

CTTTAT-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTACGGGGCGCTCCGGCCATTGCCATTGTGGGCTGCCTCTCGCTGG----------CC----GT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................ATTGTGGGCTGCCTCTCGCT....................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCTCCGGCCATTGCCATTGTGGGCTGC............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ATTGCCATTGTGGGCTGCCTC.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CATTGTGGGCTGCCTCTCGCTGG----------C.......	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCTTTGT------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGGGGCGCTCCGGCTATTGCCATTGTGGGCTGCCTCTCGCTGG----------CC----GT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................GCCATTGTGGGCTGCCTCTCGCTGG----------C.......	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CATTGTGGGCTGCCTCTCGCTGG----------........	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TTGTGGGCTGCCTCTCGCTGG----------CC----..	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TTGTGGGCTGCCTCTCGCTGG----------CC----GT	25	1	1.00	1	1	0	0	0	0	0

droGri2

TTACTTT------TTTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCGAGGGGCACCGGCGATTGCCATTGTCGGCTGCCTTTCCCTGG----------CC----GT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_1180

3R:28218328-28218478 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads