dya_1119

exon [dyak_GLEANR_7547:3]; exon [dyak_GLEANR_7547:4]; CDS [Dyak\GE23791-cds]; CDS [Dyak\GE23791-cds]; intron [Dyak\GE23791-in]

##################################################----------------------------------------------------------------################################################## GCGGAAACATGGGCGGTGGCAACTACGGCAACCAGAATGGCGGGAACTGGGTAAGAACCTTATAATAGCCTTCGATTCGCATTGTGGCTTATGGCCGGCTAATTGACATTGCAGAACAACGGTGGCAATAACTGGGGCAACAACCGCGGGGGTAACGACAACTG ************************************************.................((..((((((.((....(((((...))))))).))))))....))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	M056 embryo	V120 male body	V052 head	V058 head
.............................AACCAGAATGGCGGGAACTGGA.................................................................................................................	22	1	1	2.00	2	2	0	0	0	0
.................................................................................................................................AACTGGGGCAACAACCGCGGGGGT...........	24	0	1	1.00	1	0	0	1	0	0
.............................AACCAGAATGGCGGGAACTGGAA................................................................................................................	23	2	1	1.00	1	1	0	0	0	0
...........................................................................TGCGCATTGTGGCTTATGGCCGGCC................................................................	25	2	1	1.00	1	0	1	0	0	0
.................................................................................................................GAACAACGGTGGCAATAACTGGG............................	23	0	1	1.00	1	1	0	0	0	0
..................................................................................................................AACAACGGTGGCAATAACT...............................	19	0	1	1.00	1	1	0	0	0	0
.....AACATGGGCGGTGGCAACTAC..........................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................GCCACAACCGCGGGGGTAAC........	20	1	1	1.00	1	0	0	0	0	1
....................AACTACGGCAACCAGAATGGCGGGAACT....................................................................................................................	28	0	1	1.00	1	0	0	1	0	0
......................CTACGGCAACCAGAATGGC...........................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................GTGGCAATAACTGGGGCAAC.......................	20	0	1	1.00	1	0	0	0	1	0
.......................................................................................................................................GGCAACAACCGCGGGGGTAACGACAAC..	27	0	1	1.00	1	0	1	0	0	0
................................CAGAATGGCGGGAACTGGAACA..............................................................................................................	22	3	2	0.50	1	0	0	1	0	0
............................................................................................................................GCAGTAACTGGGGAAACGAC....................	20	3	9	0.11	1	1	0	0	0	0
.........................................GGTAAATGGGTAAGAACC.........................................................................................................	18	2	12	0.08	1	0	1	0	0	0

CGCCTTTGTACCCGCCACCGTTGATGCCGTTGGTCTTACCGCCCTTGACCCATTCTTGGAATATTATCGGAAGCTAAGCGTAACACCGAATACCGGCCGATTAACTGTAACGTCTTGTTGCCACCGTTATTGACCCCGTTGTTGGCGCCCCCATTGCTGTTGAC ************************************************.................((..((((((.((....(((((...))))))).))))))....))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body
...............................................................................................................................CATAGACCCCGTTGTTGGC..................	19	2	1	1.00	1	1

Species	Coordinate	ID	Alignment
droYak3	3R:22065325-22065488 -	dya_1119	GCGG---AAACATGGGCGGT------GGCA--------------------------------ACTACGGCAACCAGAATGG---CGGGAACTGGGTAA----------------------------GAACCTTATAA-----------------TAGCCTTC--GATT-CGCA--TTGTGGC----TT--ATG---GC------CGG----CTAATT-GACA----TTGCAGAACAACGGTGGCAATAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG
droEre2	scaffold_4820:3605062-3605228 -		GCGG---AAACATGGGCGGT------GGCA--------------------------------ACTACGGCAACCAGAATGGTGGTGGGAACTGGGTAA----------------------------GAACTTAATGA-----------------TAGCCTTC--AATT-CGAA--TTGTGGC----TT--ATG---GC------TGG----TTAATT-GACA----TTGCAGAACAACGGTGGCAATAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG
droSec2	scaffold_22:1030999-1031165 +		GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGGAACTGGGTAA----------------------------GGACTTATTGA-----------------TCGCCAAC--AATT-CGAT--TTGAGAC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG
droSim2	3r:23806203-23806369 +	dsi_29915	GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGCAACTGGGTAA----------------------------GGACTTATTGA-----------------TCGCCAAC--AATT-CGAT--TTGAGAC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG
dm3	chr3R:24428617-24428783 +		GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGCAACTGGGTAA----------------------------GAACTTATTGA-----------------TCGCCATC--AATT-CGAT--TTGAGGC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG
droEug1	scf7180000409787:1152083-1152256 -		GTGG---CAATATGGGAGGCGGTGGCGGTA--------------------------------ACTATGGTAACCAGAATGGAGGTGGTAATTGGGTAA----------------------------GCATAATTTAA-----------------TAGTCTTT--CATT-TAAA--TTGTGGT----TT-TTAA---TT------TGC----TTAATT-GACA----TTTCAGAACGGTGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAATG------------------ATAACTG
droBia1	scf7180000302075:2349448-2349621 -		GCGG---CAACATGGGCGGTGGTGGTGGCA--------------------------------ACTACGGCAACCAGAATGGAGGAGGCAACTGGGTGA----------------------------GTGCCATTAAG-----------------TGGTTGGC--CATG-CGAA--CTGTGAT----TT-TACA---GC------TGG----TTAATT-AAAA----TTGCAGAATGGCGGCGGTAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ACAACTG
droTak1	scf7180000415383:24007-24183 -		GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTATGGCAACCAGAATGGAGGAGGCAACTGGGTAA----------------------------GTGCCATTATG-----------------GGGTTTTT--CATT-TGTACATTCCGTT----TT--ATA---GCTGC---T-T----TTAATT-GATA----TTGCAGAATGGCGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ATAACTG
droEle1	scf7180000491280:3494153-3494330 -		GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGCAACCAGAATGGAGGCGGCAACTGGGTAA----------------------------GTACAATTAAA-----------------TGGGTTTTAACACT-CGAA--TTGTGTT----TTCTATA---GC------TGG----TTAATTCGACT----TTGCAGAATGGCGGTGGTAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ATAACTG
droRho1	scf7180000779501:152549-152718 +		GGGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGAAACCAGAATGGAGGAGGCAACTGGGTAA----------------------------GTACTTTTATT-----------------TGGCCTCC--CATT-TTAA--TT----C----TT--ATA--AAC------TGG----TTAATT-GACA----TTGTAGAATGGCGGTGGTAACAA-----------CTGGGGCAACAACCGTGGAGGCAACG------------------ACAGCTG
droFic1	scf7180000453581:189789-189962 -		GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGCAACCAGAACGGAGGTGGCAACTGGGTGA----------------------------GTGGATTTGGA-----------------TCTGCTTC--TATT-TTGA--GTCTGGT----TT-AATA---GC------TGG----CTAATT-GACC----TTCTAGAACGGCGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ACAACTG
droKik1	scf7180000302706:1366441-1366617 +		GCGG---CAATATGGGTGGTGGCGGGGGCC--------------------------------AGTATGGCAACCAGAATGGAGGTGGCAACTGGGTAA----------------------------GTACTGTCAGA-----------------TGACCTTC--CAAC-CTAA--TAGTGAT----TTTAATACG-G--ACTC-TGG----TCAATT-GACG----TTCCAGAATGGCGGCGGTA---A-----------TTGGGGAAATAACCGCGGGGGCAACG------------------ATAACTG
droAna3	scaffold_13340:17233087-17233259 +		GCGGTAGCAACATGGGCGGCGGTGGCGGCG-----------------------------GAAACTACGGCAACCAAAACGGAGGTGGCAACTGGGTTA----------------------------GT--TGCGTGA-----------------CATTCTAC--AGTA-A-----GAGTGGC----TA--ATT---AT---TACT-G----CTAATT-GACA----TTTCAGAACGGAGGTGGCA---A-----------CTGGGGAAACAATCGTGGTGGGAACG------------------ACAACTG
droBip1	scf7180000396424:734560-734732 +		GCGGAGGCAATATGGGCGGCGGTGGAGGCG-----------------------------GAGGCTATGGCAATCAAAACGGAGGGGGCAACTGGGTTAGTTGC-----------------------GTGCCATT------------------------GGTG--CA----TAA--GAGTGGC----TA--ATT---AT---TTG-TG----CTAATT-GACA----TTTCAGAACGGAGGTGGCA---G-----------CTGGGGCAACAACCGCGGCGGCAACG------------------ATAGCTG
dp5	2:3611309-3611487 -		GTGGATCCAACATGGGCGGCGGTGGCGGCA--------------------------------GCTACGGCAATCAGAATGGAGGCGGTAATTGGGTAA----------------------------GTGATTCG--------------ATTAAATC------CACTTT-CTAA--TTGCA------TT--ATA--AAT------TGACTGACGTATG-GATATTTTGTGCAGAATGGCGGCGGTA---A-----------TTGGGGTGGTAACCGTGGGGGCAATG------------------ATAACTG
droPer2	scaffold_7:737202-737353 +		GTGGATCCAACATGGGCGGCGGTGGCGGCA--------------------------------GCTACGGCAATCAGAATGGCGGCGGTAATTGGGTAA----------------------------GTGATTCG--------------ATTAAATC------CACTTT-CTAA--TTGCA------TT--ATA--AAT------TGACAGACGTATG-GATATTTTCTGCAGAATGGAGGCGGTA---A-----------TTGGGG---------------------------------------------
droWil2	scf2_1100000004902:9124803-9124982 +		GTGGCAACAACATGGGTGGTGGCGGCGGCGGT--------------------------GGAGGCTACGGCAACCAGAATGGCGGAGGCAACTGGGTAA----------------------------GA-CTGCATGA------------------AGCTTTC--TACTCTTTA--TTGTG-CTGACATTAA-------------T-T----CTATTT-GAAC--TTCTGTAGAATGGCGGCGGCA---A-----------TTGGGGTAACAATCGCGGGGGCAATG------------------ATAATTG
droVir3	scaffold_12875:14857068-14857218 +		GCGT---TGGCGTGGGCGTTGGCAGTGGCAACAATGCCGGCTCTGTCCAGGCCGTTGCACA---------AACATCGGCGGGCACCGCAGCGGTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----AACAAGAACAGCAGCAGCAGTAA--------------CAGCAGCGGCAACGGTAATGGCG------------------GCACCGG
droMoj3	scaffold_6680:8327044-8327193 -		C-AA---------TAACAAC------AACA--------------------------------ACAACAACAATCCA------------------GCAA----------------------------CA-CCAAATGCAAATCTTGCAA------CGGCC------ACG-CCCA--CTGTGAA------------------------C----ACCGCC-GCCG----CTGTGGCACAGCAGCAACAGGCACATGAGAATAGCTTGGTCAACAGTCTCGTGGGCGTCA------------------TCAACAA
droGri2	scaffold_14830:716017-716188 +		GCGG---CAACATGGGTGGTGG---TGGCA--------------------------------ACTTTGGCAGCCAGAACGGCAG------CTGGGGCAATCGCGGCGGCAACAATGACAACTGGGGTG-GCAACAGCAACTTTGGTGG-----------------------------------------------------------------------------------CGGCGGCGGCGGCTACGG-----------TGGCGGCAACAATTGCTGGGGCAACAATGCCGGTCCCTGGGACAATAGTTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

GCGG---AAACATGGGCGGT------GGCA--------------------------------ACTACGGCAACCAGAATGG---CGGGAACTGGGTAA----------------------------GAACCTTATAA-----------------TAGCCTTC--GATT-CGCA--TTGTGGC----TT--ATG---GC------CGG----CTAATT-GACA----TTGCAGAACAACGGTGGCAATAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................AACCAGAATGG---CGGGAACTGGA........................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AA-----------CTGGGGCAACAACCGCGGGGGT.............................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................AACCAGAATGG---CGGGAACTGGAA.......................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GAACAACGGTGGCAATAA-----------CTGGG..............................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AACAACGGTGGCAATAA-----------CT.................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........AACATGGGCGGT------GGCA--------------------------------ACTAC....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................A--------------------------------ACTACGGCAACCAGAATGG---CGGGAACT...........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................CTACGGCAACCAGAATGG---C..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTGGCAATAA-----------CTGGGGCAAC.........................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GGCAACAACCGCGGGGGTAACG------------------ACAAC..	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GCGG---AAACATGGGCGGT------GGCA--------------------------------ACTACGGCAACCAGAATGGTGGTGGGAACTGGGTAA----------------------------GAACTTAATGA-----------------TAGCCTTC--AATT-CGAA--TTGTGGC----TT--ATG---GC------TGG----TTAATT-GACA----TTGCAGAACAACGGTGGCAATAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGGAACTGGGTAA----------------------------GGACTTATTGA-----------------TCGCCAAC--AATT-CGAT--TTGAGAC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................ACAACCGCGGGGGTAACG------------------.......	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................AACCGCGGGGGTAACG------------------ACAACT.	22	1	1.00	1	0	0	1	0
....................................................................GCAACCAGAATGGTGGCGGGAACTG..........................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0

droSim2

GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGCAACTGGGTAA----------------------------GGACTTATTGA-----------------TCGCCAAC--AATT-CGAT--TTGAGAC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................ATT---AC------TGG----TTAATT-GGCA----TTG..................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ACGGCAACCAGAATGGTGGCG.................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CTGGGGCAACAACCGCGGGGGTAACG------------------A......	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GT------GGAA--------------------------------ACTACGGCAACCAGAATG.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GTAA----------------------------GGACTTATTGA-----------------TCGCCAAC--AATT-..............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........ACATGGGCGGT------GGAA--------------------------------ACTACGGCA................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................AA----------------------------GGACTTATTGA-----------------TCGCC........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................C----TT--ATT---AC------TGG----TTAATT-GG...........................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

dm3

GCGG---AAACATGGGCGGT------GGAA--------------------------------ACTACGGCAACCAGAATGGTGGCGGCAACTGGGTAA----------------------------GAACTTATTGA-----------------TCGCCATC--AATT-CGAT--TTGAGGC----TT--ATT---AC------TGG----TTAATT-GGCA----TTGCAGAACAACGGTGGCAACAA-----------CTGGGGCAACAACCGCGGGGGTAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........ATGGGCGGT------GGAA--------------------------------ACTACGGCAACC.............................................................................................................................................................................................................................................	25	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	4	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGGGCGGT------GGAA--------------------------------ACTACGGC.................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	2	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGGGCGGT------GGAA--------------------------------ACTACGGCAAC..............................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................A-----------CTGGGGCAACAACCGCGGGG...............................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AA-----------CTGGGGCAACAACCGCGGGGGT.............................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAACAACCGCGGGGGTAAC..........................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AACAACCGCGGGGGTAACG------------------.......	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCAACAACCGCGGGGGTAACG------------------A......	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................T------GGAA--------------------------------ACTACGGCAACCAGA..........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAACAA-----------CTGGGGCAACAACCGCG..................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GGCAACAACCGCGGGGGTAAC..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CGGTGGCAACAA-----------CTGGGGCAACA........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................T--ATT---AC------TGG----TTAATT-GGCA----TTGCAG...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................GCAACCAGAATGGTGGCGGCAACTGGAAC......................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ACAA-----------CTGGGGCAACAACCGCGGGA...............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGCAACCAGAATGGTGGCGGCA..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AC------TGG----TTAATT-GGCA----TTG..................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GTGG---CAATATGGGAGGCGGTGGCGGTA--------------------------------ACTATGGTAACCAGAATGGAGGTGGTAATTGGGTAA----------------------------GCATAATTTAA-----------------TAGTCTTT--CATT-TAAA--TTGTGGT----TT-TTAA---TT------TGC----TTAATT-GACA----TTTCAGAACGGTGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAATG------------------ATAACTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCGG---CAACATGGGCGGTGGTGGTGGCA--------------------------------ACTACGGCAACCAGAATGGAGGAGGCAACTGGGTGA----------------------------GTGCCATTAAG-----------------TGGTTGGC--CATG-CGAA--CTGTGAT----TT-TACA---GC------TGG----TTAATT-AAAA----TTGCAGAATGGCGGCGGTAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTATGGCAACCAGAATGGAGGAGGCAACTGGGTAA----------------------------GTGCCATTATG-----------------GGGTTTTT--CATT-TGTACATTCCGTT----TT--ATA---GCTGC---T-T----TTAATT-GATA----TTGCAGAATGGCGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ATAACTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGCAACCAGAATGGAGGCGGCAACTGGGTAA----------------------------GTACAATTAAA-----------------TGGGTTTTAACACT-CGAA--TTGTGTT----TTCTATA---GC------TGG----TTAATTCGACT----TTGCAGAATGGCGGTGGTAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ATAACTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGAAACCAGAATGGAGGAGGCAACTGGGTAA----------------------------GTACTTTTATT-----------------TGGCCTCC--CATT-TTAA--TT----C----TT--ATA--AAC------TGG----TTAATT-GACA----TTGTAGAATGGCGGTGGTAACAA-----------CTGGGGCAACAACCGTGGAGGCAACG------------------ACAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGG---CAACATGGGCGGCGGTGGCGGCA--------------------------------ACTACGGCAACCAGAACGGAGGTGGCAACTGGGTGA----------------------------GTGGATTTGGA-----------------TCTGCTTC--TATT-TTGA--GTCTGGT----TT-AATA---GC------TGG----CTAATT-GACC----TTCTAGAACGGCGGTGGCAACAA-----------CTGGGGCAACAACCGCGGAGGCAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGG---CAATATGGGTGGTGGCGGGGGCC--------------------------------AGTATGGCAACCAGAATGGAGGTGGCAACTGGGTAA----------------------------GTACTGTCAGA-----------------TGACCTTC--CAAC-CTAA--TAGTGAT----TTTAATACG-G--ACTC-TGG----TCAATT-GACG----TTCCAGAATGGCGGCGGTA---A-----------TTGGGGAAATAACCGCGGGGGCAACG------------------ATAACTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCGGTAGCAACATGGGCGGCGGTGGCGGCG-----------------------------GAAACTACGGCAACCAAAACGGAGGTGGCAACTGGGTTA----------------------------GT--TGCGTGA-----------------CATTCTAC--AGTA-A-----GAGTGGC----TA--ATT---AT---TACT-G----CTAATT-GACA----TTTCAGAACGGAGGTGGCA---A-----------CTGGGGAAACAATCGTGGTGGGAACG------------------ACAACTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........ATGGGCGGCGGTGGCGGCG-----------------------------GA..........................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	6
...........ATGGGCGGCGGTGGCGGCG-----------------------------GAA.........................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
............TGGGCGGCGGTGGCGGCG-----------------------------GA..........................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
............TGGGCGGCGGTGGCGGCG-----------------------------GAA.........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
......GCAACATGGGCGGCGGTGGCGGC..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...........ATGGGCGGCGGTGGCGGCG-----------------------------GAAA........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............GGGCGGCGGTGGCGGCG-----------------------------GAAA........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................GTGGCGGCG-----------------------------GAAACTACGGC.................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....AGCAACATGGGCGGCGGTGGCGGCG-----------------------------GA..........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................TACGGCAACCAAAACGGAGG...................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........ATGGGCGGCGGTGGCGGCG-----------------------------GAC.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................CAACCAAAACGGAGGTGGCAACTGG.........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................GAAACAATCGTGGTGGGAAC..........................	20	2	1.00	2	0	0	0	0	0	2
...........ATGGGCGGCGGTGGCGGCG-----------------------------GAT.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........ATGGGCGGCGGTGGCGGCG-----------------------------GAAT........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........AACATGGGCGGCGGTGGC.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........ACATGGGCGGCGGTGGCGGCG-----------------------------GAAAC.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................GGCA---A-----------CTGGGGAAACAATCGTGGT................................	24	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................AACAATCGTGGTGGGAACG------------------ACA....	22	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GGAGGTGGCA---A-----------CTGGGGAAACAAT......................................	24	2	0.50	1	0	1	0	0	0	0

droBip1

GCGGAGGCAATATGGGCGGCGGTGGAGGCG-----------------------------GAGGCTATGGCAATCAAAACGGAGGGGGCAACTGGGTTAGTTGC-----------------------GTGCCATT------------------------GGTG--CA----TAA--GAGTGGC----TA--ATT---AT---TTG-TG----CTAATT-GACA----TTTCAGAACGGAGGTGGCA---G-----------CTGGGGCAACAACCGCGGCGGCAACG------------------ATAGCTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTGGATCCAACATGGGCGGCGGTGGCGGCA--------------------------------GCTACGGCAATCAGAATGGAGGCGGTAATTGGGTAA----------------------------GTGATTCG--------------ATTAAATC------CACTTT-CTAA--TTGCA------TT--ATA--AAT------TGACTGACGTATG-GATATTTTGTGCAGAATGGCGGCGGTA---A-----------TTGGGGTGGTAACCGTGGGGGCAATG------------------ATAACTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................GAATGGCGGCGGTA---A-----------TTGGGGTG...........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CAGAATGGAGGCGGTAAT............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................ACGGCAATCAGAATGGAGGCGGTAAA............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...GATCCAACATGGGCGGCGGTG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AATGGCGGCGGTA---A-----------TTGGGGTG...........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GCGGCA--------------------------------GCTACGGCAATC.............................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CTGACGTATG-GATATTTTGTGCAG...............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................T------TGACTGACGTATG-GATATTTTGTGC.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................GCGGCGGTA---A-----------TTGGGGTGGTA........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGACTGACGTATG-GATATC.......................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................TACGGCAATCAGAATGGAGGCGGT...............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

GTGGATCCAACATGGGCGGCGGTGGCGGCA--------------------------------GCTACGGCAATCAGAATGGCGGCGGTAATTGGGTAA----------------------------GTGATTCG--------------ATTAAATC------CACTTT-CTAA--TTGCA------TT--ATA--AAT------TGACAGACGTATG-GATATTTTCTGCAGAATGGAGGCGGTA---A-----------TTGGGG---------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........ATGGGCGGCGGTGGCGGCA--------------------------------GCT......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

GTGGCAACAACATGGGTGGTGGCGGCGGCGGT--------------------------GGAGGCTACGGCAACCAGAATGGCGGAGGCAACTGGGTAA----------------------------GA-CTGCATGA------------------AGCTTTC--TACTCTTTA--TTGTG-CTGACATTAA-------------T-T----CTATTT-GAAC--TTCTGTAGAATGGCGGCGGCA---A-----------TTGGGGTAACAATCGCGGGGGCAATG------------------ATAATTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	26	1	59.00	59	0	34	0	7	18
...........ATGGGTGGTGGCGGCGGCGGT--------------------------GGA..........................................................................................................................................................................................................................................................	24	1	8.00	8	0	7	0	0	1
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAGG........................................................................................................................................................................................................................................................	25	1	6.00	6	0	5	0	0	1
..............GGTGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	24	2	6.00	12	0	10	0	1	1
.............GGGTGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	25	1	5.00	5	0	3	0	0	2
...........ATGGGTGGTGGCGGCGGCGGT--------------------------GGAG.........................................................................................................................................................................................................................................................	25	1	4.00	4	0	2	0	1	1
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAGGCT......................................................................................................................................................................................................................................................	27	1	4.00	4	0	1	0	0	3
............TGGGTGGTGGCGGCGGCGGT--------------------------GGA..........................................................................................................................................................................................................................................................	23	1	4.00	4	0	3	0	0	1
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAG.........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2
..............GGTGGTGGCGGCGGCGGT--------------------------GGAGGCT......................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0
...............................................................CTACGGCAACCAGAATGGCG....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............GTGGTGGCGGCGGCGGT--------------------------GGAGGCT......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................TATTT-GAAC--TTCTGTAGAATGGCGGC......................................................................	26	1	1.00	1	0	0	1	0	0
..GGCAACAACATGGGTGGTGGCGGCG............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................GCGGCGGCA---A-----------TTGGGGTA...........................................	18	1	1.00	1	0	1	0	0	0
...............GTGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	23	2	1.00	2	0	1	0	0	1
.........................................................................................................................................................................................................................................................................GTAACAATCGCGGGGGCAATG------------------ATAATT.	27	1	1.00	1	0	1	0	0	0
.............GGGTGGTGGCGGCGGCGGT--------------------------GGAGGCT......................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAGGA.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
....................................................................GCAACCAGAATGGCGGAGGC...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........CATGGGTGGTGGCGGCGG...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.......CAACATGGGTGGTGGCGGCGGC..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
............TGGGTGGTGGCGGCGGCG.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................................................................AATGGCGGCGGCA---A-----------TTGG...............................................	18	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................ATGGCGGCGGCA---A-----------TTGGGGTAAC.........................................	23	1	1.00	1	0	0	1	0	0
...........ATGGGTGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............TGGGTGGTGGCGGCGGCGGT--------------------------GG...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...........ATGGGTGGTGGCGGCGGCGGT--------------------------GG...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......................GGCGGCGGT--------------------------GGAGGCTAC....................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
...............................T--------------------------GGAGGCTACGGCAACCAGAATGGCGGA..................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...........ATGGGTGGTGGCGGCGGCGGT--------------------------GGAT.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAGC........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............TGGGTGGTGGCGGCGGCGGT--------------------------GGAT.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
................TGGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0
...............GTGGTGGCGGCGGCGGT--------------------------GGAGGCC......................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	1
.................GGTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	21	4	0.50	2	0	2	0	0	0
..........................................................................AGAATGGCGGAGGCAACTGGAAT......................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0
..................GTGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	20	5	0.40	2	0	2	0	0	0
..............GGTGGTGGCGGCGGCGGT--------------------------GGAGG........................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0
...............GTGGTGGCGGCGGCGGT--------------------------GGAGG........................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0
..............GGTGGTGGCGGCGGCGGT--------------------------GGAG.........................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
.................GGTGGCGGCGGCGGT--------------------------GGA..........................................................................................................................................................................................................................................................	18	8	0.25	2	0	2	0	0	0
...............GTGGTGGCGGCGGCGGT--------------------------GGAG.........................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0
...................TGGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0
....................GGCGGCGGCGGT--------------------------GGAGGC.......................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0
..............GGTGGTGGCGGCGGCGGT--------------------------.............................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0

droVir3

GCGT---TGGCGTGGGCGTTGGCAGTGGCAACAATGCCGGCTCTGTCCAGGCCGTTGCACA---------AACATCGGCGGGCACCGCAGCGGTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----AACAAGAACAGCAGCAGCAGTAA--------------CAGCAGCGGCAACGGTAATGGCG------------------GCACCGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................GCAGCAGCAGTAA--------------CAGCAGCGGC......................................	23	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTGGGCGTTGGCAGTGGCA.........................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTTGCACA---------AACATCGGCG.......................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTTGCACA---------AACATCGGCGGGC....................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCGGCAACGGTAATGGCG------------------GCAC...	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CTGTCCAGGCCGTTGCACA---------AACATC...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................T-GACC----AACAAGAACAGCAGCAGCAGT................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGCCGGCTCTGTCCAGGCCGTTG..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GT---TGGCGTGGGCGTTGGCAGTGGC..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................CTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----AAC..................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGT---TGGCGTGGGCGTTGGCAGTGGC..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GCAGCAGTAA--------------CAGCAGCGGC......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GTAA--------------CAGCAGCGGCAACGG.................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTTGCACA---------AACATCGGCGG......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCGTGGGCGTTGGCAGTGGC..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCAACAATGCCGGCTCTGTC........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTCCAGGCCGTTGCACA---------AAC..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAGCAGCAGCAGTAA--------------CAGCAGCGGCA.....................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTGGCAGTGGCAACAATGCCGGC..............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----A....................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATGCCGGCTCTGTCCAGGCCGTTGC.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGCAGCGGTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----.....................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTGGGCGTTGGCAGTGGC..........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GTAA--------------CAGCAGCGGCAACG..................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CTCTGTCCAGGCCGTTGCAC...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGCGTGGGCGTTGGCAGTGGC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGCAGCGGTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----AAC..................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TCGCT-GACC----AACAAGAACAGCA........................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GTAA--------------CAGCAGCGGCAACGGT................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CAGCAGTAA--------------CAGCAGCGGC......................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCAGCGGTGCTG----------------------------G-------------------------------------------------------------------------------C----CTCGCT-GACC----A....................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTGGGCGTTGGCAGTGGCAACAAT....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...T---TGGCGTGGGCGTTGGCA...............................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AA--------------CAGCAGCGGCAACGGTAAT.............................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGT---TGGCGTGGGCGTTGGC................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AA--------------CAGCAGCGGCAACGGT................................	18	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GT---TGGCGTGGGCGTTGGC................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AACAAGAACAGCAGCAGC...................................................................	18	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAGCAGCAGCAGTAA--------------CAGC............................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C-AA---------TAACAAC------AACA--------------------------------ACAACAACAATCCA------------------GCAA----------------------------CA-CCAAATGCAAATCTTGCAA------CGGCC------ACG-CCCA--CTGTGAA------------------------C----ACCGCC-GCCG----CTGTGGCACAGCAGCAACAGGCACATGAGAATAGCTTGGTCAACAGTCTCGTGGGCGTCA------------------TCAACAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................TGCAAATCTTGCAA------CGGCC------ACG-CC............................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................AATAGCTTGGTCAACAGTCTCGTGG...............................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AACAGGCACATGAGAATAGCTTG...............................................	23	1	1.00	1	1	0	0	0	0	0
...A---------TAACAAC------AACA--------------------------------ACAACAACAA...............................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
C-AA---------TAACAAC------AACA--------------------------------ACAACAACAAT..............................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

GCGG---CAACATGGGTGGTGG---TGGCA--------------------------------ACTTTGGCAGCCAGAACGGCAG------CTGGGGCAATCGCGGCGGCAACAATGACAACTGGGGTG-GCAACAGCAACTTTGGTGG-----------------------------------------------------------------------------------CGGCGGCGGCGGCTACGG-----------TGGCGGCAACAATTGCTGGGGCAACAATGCCGGTCCCTGGGACAATAGTTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........ATGGGTGGTGG---TGGCA--------------------------------ACT......................................................................................................................................................................................................................................................	19	1	2.00	2	2	0
........................................................................................................................................................................................................................................................G-----------TGGCGGCAACAATTGCTGGGGCAAC..........................	26	1	1.00	1	1	0
..............................................................................................................................................................................................................................................GGCGGCTACGG-----------TGGCGGCA...........................................	19	1	1.00	1	1	0

dya_1119

3R:22065375-22065438 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads