ID:

dya_1114

 Coordinate:

3R:21842722-21842942 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0 -40.0 -40.0

Flybase annnotation

CDS [Dyak\GE10491-cds]; CDS [Dyak\GE10491-cds]; exon [dyak_GLEANR_10411:2]; exon [dyak_GLEANR_10411:1]; intron [Dyak\GE10491-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGGATCCAGTCTGGTCGGCCCAGCCGTGCAACTCAAGGAGACTGTTCCGTGAGTAGTAAACACATTTAAACTATATGGCCAAGTAGGCTTTGCTTAATGAGTATTTAATTACTATTAAAAGTGATATCAATATCAAATGATCCATAGCATTACTATGATAATTGCTATTGCATGATAATGTTTTGCTTTAATATTAATTGGTGGTTCAAGTTAGCAAAGCTTATTTAAGTTAACTAGAAACTATATTTAATCAATCCATTTCCCATTAGATCCAGTGTGGATCAGAATCCTGGAATGAAGCCGAAGTCCGGTAAACAGA
**************************************************(((.........))).......(((..((((.((((((((((((((...((((...(((((((.(((((((.((((...((.(((((..((....((((((.............))))))..))))))).))..))))))))))).)))))))...))))....))))))))))))))..))))..)))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 M056
embryo
 V052
head
 V058
head
.............................................................................................................................................................................................................................................................................................AGAATCCTGGAATGAAGCCGA............... 21 0 1 1.00 1 0 1 0 0 0
..................GGCCCAGCCGTGCAACTCAAGGA........................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................CATCCAGTGTGGATCAGAATCCTG........................... 24 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGTCC.......... 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGT............ 18 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................CTGTAATGAAGCCGAAGTCCGGT....... 23 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CCAGTGTGGATCAGAATCCT............................ 20 0 1 1.00 1 0 0 1 0 0
.........AGTCTGGTCGGCCCAGCCGTGCAA................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................GATCAGAATCCTGGAATGAAGCC................. 23 0 1 1.00 1 0 1 0 0 0
.......................AGCCGTGCGACTCAAGGAGACTGTT................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
...........................GTGCAACTCAAGGAGACTGTTC................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................ATCAGAATCCTGGAATGAAGCCGAA.............. 25 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................GATAATGTTTTGCTTTAATATTA........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
....................CCCAGCCGTGCAACTCAAGGA........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................ATCCTGGAATGAAGCCGAAGTCCGGT....... 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCAGAATCCTGGAATGAAGCCGAAGTCC.......... 28 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGTCCGGTA...... 24 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................TGATATCAATATCAGTTGA................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1

Anti-sense strand reads

CACCCTAGGTCAGACCAGCCGGGTCGGCACGTTGAGTTCCTCTGACAAGGCACTCATCATTTGTGTAAATTTGATATACCGGTTCATCCGAAACGAATTACTCATAAATTAATGATAATTTTCACTATAGTTATAGTTTACTAGGTATCGTAATGATACTATTAACGATAACGTACTATTACAAAACGAAATTATAATTAACCACCAAGTTCAATCGTTTCGAATAAATTCAATTGATCTTTGATATAAATTAGTTAGGTAAAGGGTAATCTAGGTCACACCTAGTCTTAGGACCTTACTTCGGCTTCAGGCCATTTGTCT
**************************************************(((.........))).......(((..((((.((((((((((((((...((((...(((((((.(((((((.((((...((.(((((..((....((((((.............))))))..))))))).))..))))))))))).)))))))...))))....))))))))))))))..))))..)))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V046
embryo
 V052
head
.............................................................................................................................................................................................................................................TCTTTGATATAAATTTGTC................................................................. 19 2 15 0.07 1 1 0
.................................................................................................................................................................................................................................................................................................AGAACCTTACTTCGGGTTA............. 19 3 19 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:21842672-21842992 + dya_1114 GTGGG-ATCCAGT--CTGGTCGGCCCAGCCGTGCAACTCAAGGAGACTGT---TCCGTGAGTAGTAAACACA--------------TTTAAAC-----------------------------------------------------------------------------------------TATATGGCCAAGTAGGCTTTGCTTAA-----------TGAGTATTTAATT----------------------ACTATTAAA----A-------GTGATATCAATATCAAATGATCCATAGCA-----TT-------A------------------------------CT--------------A--------TGATAATTGCTATTGCATGAT--AATGTTTTGCTTTAATATTAATTGGTGGTTCAAGT-TAGC----AAAGCTTATT-TAA-----GTTAAC---------TAGAAACTATATTTAATCA----ATCCATTTCCCATTAGATCCAGTGTGGATCAGAATC---CTGGAATGAAGCCGAAGTCCGGTAAACAGA
droEre2 scaffold_4820:3374837-3375032 + GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTTCAACTCAAGGAGACTGT---ACCGTGAGTATTAATCCCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATGGTAAAGCAGGCTTTGCTTTA-----------TGAGCATTTAATT----------------------AATATTAAA----A-------TTGATATCAATATCAAATGATCCATATCA-----TT-------ACTATG--------------------ATA--CT--------------A--------TGA----TATTTCTGCACGAT--AATGTTGTGTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_4:3525849-3526146 - GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTGCAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCCG------------------AAAC-----------------------------------------------------------------------------------------TAAATAGTATAGTAGGCATTGCA-----------------------------------------------------TTAAA----ATTCAGTTGTGATATCAATATCAAATGATTCATATCA-----TT-------A------------------------------CT--------------A--------TGATTAATGCAATTC---TAT--AATGTTTTGCTTAAATATTAATTGGTGGTTCAAGT-TAGA----AAAGCTTATC-TAT-----ATTTAC---------T---AACTATATTTAATCA----ATCGATTTCCCAATAGATCCAGTGTAGATCAGAATC---CTGGGATGAAAGCAAAGCCCGGCAAACAGG
droSim2 3r:24024125-24024443 - dsi_5678 GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTGCAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCCCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATAGTATAGTAGGCTTTTT----AAATAAC----TGAACATTGCA----------------------------TTAAA----ATTCAGTTGTGATATCAATATCAAATGATTCATATCA-----TT-------A------------------------------CT--------------A--------TTATTAATGCAATTG---TTT--AATGTTTTGCTTAAATATTAATTGGTGGTTCAAGT-TAGA----AAAGCTTATA-CAT-----ATTTAC---------T---AACTATATTTAATCA----ATCGATTTCCCCATAGATCCAGTGTAGATCAGAATC---CTGGGATGAAGGCAAAGCCCGGCAAACAGG
dm3 chr3R:24662358-24662670 - GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTACAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCGCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATAGCAAAGTAGGCTTTAA----AAATAAC------AGCATTGCA----------------------------TTGAA----ATTCAGTTGTGATATCAATATCA---------TATCA-----TT-------A------------------------------CT--------------A--------TGATTATTGCAATTG---TAT--AATGTTTTGCTTCAATATTAATTGGTGGTTCAAGT-TAGA----AAATCATATC-TCAACTATTTTAAC---------T---GACTATATTAAATCA----ATCGATTTCCCAATAGATCCAGTGCGGATCAGAATC---CTGAGATGAAGGCGAAGCCTGGCAAACAGG
droEug1 scf7180000409787:921487-921890 + GTGGG-TTCCAGT--TTAGTTGGGCCAGCCGTGCAACTCAAGGAAACCGT---GTCGTGAGTAGTGATCCTAGAGAGAAACAAAAATTTGAACCAGACAATTATTAAGCAAGCTTAAA------------------------------ATTATATTTAAAAAGTTTTATTTTTGGGTCTAAATG-AAGATCTAGTAGGCTTTCA------------------------------------------------------TTAAACGATATTAGATTTTGATACCAGTGTCC----------------------------------ACATTGATATAATCAAGTAGCCTAT--ATAATAAATTATTAATCGTCTGCTTTTAAATC------AATTAG--AATGTTTTGCTTTAACATTAAAGGATGGTTCAAGT-TAGA----AAGATAT-CCGAAA-----TTATTA---------AATACATTCGT-TT----ATTACTTATATTTTTATACAGATCCACTGTGGATTCGAAAA---CCGGAACGGATATAAAACCCGCTAGACAGG
droBia1 scf7180000302075:2098295-2098668 + GTGGG-TTCTAGT--CTCGTTGGACCAGCTGTGGAGCTTAAGGAAACCGT---ATCGTGAGTAGTGATCTCA-AAAGATCTTTGAATTTCTTTTATAAAATCATAAAGCAAGCTGTAAAAAAACCGATGATTCGTAATTTTACTTAGAATT-------------------------CCTGAATGAAAGATATAGTAGGCTCTGCTT----------------------------------------------------------------------TGATATCAA-ATCAAATCATCAA---------AT----TAATAT--TC--------------------ATA--TTATC---------------------AAAAAATATACCTG---AAT--AATGTTTTGCTTTAATATTAAATGGTGGTTCAAGT-GAGA----GAAGATGATA-TAA-----ATAAAA---------GATAAATTGTTCTAATCCC----TATCAATTCCCAACAGATCCAACGTGAATCCCAAGC---CAGGATCGGATTCAAAGCCCGAAAGGCAGG
droTak1 scf7180000415700:208705-208907 - TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCAAGT---------------------TAATAT--CC--------------------CTTTT--ATAATATAATATTAA--------TATTAAATCGATCTG---AAT--AATGTTTTGCTTTAATGTCAAATGGTGGTTCAAGT-TAGT----AAAGAAGATT-ATA-----ATTTCC---------AAAACATTATTTTAACCAA----TATTAATTCCCAACAGATCCAGTGTGCAGCCGAAAC---CTGCAATGGATGCGAAACCCGCCAGAGAGG
droEle1 scf7180000491280:3241292-3241559 + GGCAA-AGTA----------------------------------------------------------------------------------------------------GGCTGTGATTGAATTTTTA---------------------------------------------------------------------------------------------A--------TATTATTC--------------------TAAT----TGCCATTTGTAGGCTTAGTTTGATTTGGGCCATATGAGAAAATTGGTTGCCTT--T--------------------------CTATC--T----ACTTA--------TAGTTAATCTTTCTG---TATCGAATGTTTTGCTTTAATGTCAAGTCCTGGTTCAAGT-TAGA----AAATGTC--TTAAA-----ATAACA---------GATAATCCATATTAAATAA----ATTAATTTTCCAACAGATCCAATGTAGAACCCAGAC---CTGGAATTGAACCGAAGCCCGGTAGACAAG
droRho1 scf7180000779501:395913-396170 - AGTAG-GCTT---------------------------------------------------------------------------------------------------------TTATTAAATTAGTG---------------------------------------------------------------------------------------------A--------TTTTATTTTAATAGCCTTTTTAAAATG-----------TCAGATTTTATATTAACATCAAGTGGGCTATATCAGGAAGTT-------A------------------------------CG--------------A--------TAATAAGTCTGACTA---TAT--AATGTTTTGCTTTAACGTGAAATGGTGGTCTAAGT-TAGA----AAAGTGCATT-CAA-----ATTAGA---------GATAAACTATATTTATTTA----TTATATTTACCCTTAGAACCAGTTTGGATCCAAAAC---GCAGAATTGACCCAAAGCCCGCTGGACAAG
droFic1 scf7180000454073:3688777-3689090 + GTGGG-ATCCAGT--CTGGTTGGCCCAGCCGTGCAGCTCAAGGAAACAAT---ATCGTGAGTAGATAG-----------------------TT-----------------------------------------------------------------------------------------TGTACACTATAGTAGGCTTTTTATAAGAATGACAAATTGATTGGGTGATT----------------------TC-----------------TTTTGATGCTAATGTTC----------------------------------ATATT---------------------------AAAGTATTACCCCTTCAATCTTAAATA------TATCAT--AATGTTTTGCTTTAATGTGAAGCGATGGTTCAAGT-TAGA----AAAGTTCATC-TGA-----TGGAAA---------AGCATTCCGATTTAAATCC----CTCGATTCCCCCACAGATCGAGCGCGAATCCGAAAC---CCGGAACCGATCCAAAGACCACCAGGCAGG
droKik1 scf7180000302639:2727708-2727948 + GTCGG-TTCCAGC--CTGGTGGGACCAGCGGTGCAGCTCAAGGAGAACCA---GGGGTAAGTAATGAA------------------------------------------------------------------------------------------------------------------AAAAGAATAAAGCAGGCTTTACTTTA-----------------------------------------------------------------TTGT-------------------------------------------------------------------------------------------------------------------GAC--AATGTTTTGTTTTAATATAAAATGTTGGTTTAAGT-AAGG----AATAATTTTTTAGA-----ATGACTGAAACTGGAAATGA-------TT----AATATTTATGTTTTCTCTTAGATCTGGTGGGGATCCAAAGCCACCTGGCATCGAACCAG---CTCCCAGACAAG
droAna3 scaffold_13340:17460175-17460236 - GTGGG-CTCTAGC--CTGGTAGGACCAGCTGTCCAGCTAAAGGAAGCAAT---TAAGTGAGTGGTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396424:961921-962000 - TGAGTTATCCAAAGATTG-T---------------------------------GTGAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTTTAATGAAATATTTTGTAGACCAAAGGC---CC----------AGCAACCGGCAAAGCAAG
dp5 2:13754606-13754693 + GTCGG-CTCCAGT--CTGGTGGGTCCAGCGGTGCAGCTAAAGGAAACAACTGTGGGGTATGTAC---TCGTA--------------TTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--GAC------------------TTTGTGGCTCAAT----------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:6692952-6692995 - GTCGG-CTCCAGT--CTGGTGGGTCCAGCGGTGCAGCTGAAGGAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:9366684-9366806 - GTCGG-TTCGAGT--CTAGTTGGCCCCGCCGTGCAATTGGAAGAGGCAAC---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTTCAATTGA-----GT-------A----------------------------------------------A--------TTATTAAAAGAATAT---TGA--AACATTAAGCTTAATTACTAAACAATTA-------------------------------------------------------------------------CTTCATTTCCA----------------------------------------------------------
droVir3 scaffold_13047:10228484-10228614 + GTGGG-CTCTAGT--CTAGTCGGACCTGCGGTGCAGCTCAAGGAAACAGC---TGGGTAAGC-GTGACGTTT--------------TCTAAGC-----------------------------------------------------------------------------------------TCGATGTTTA-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------AATA----GTTTTT---ATT--GAAGTTGTATTTCATTGTGAAAAATTGTTGA---------------------------------------------------------------------------------------------------------------------------------------AAGT
droMoj3 scaffold_6540:28378460-28378514 + GTGGG-CTCCAGT--CTGGTCGGACCTGCGGTGCAGCTGCAGGAAACAAT---TGGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:3833949-3834127 - GTCGG-CTCCAGT--CTGGTCGGACCAGCGGTGCAGCTGGAGCAGCAGGA---GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGGTAAGTC--CC--------------------CAATT--GAGATATAAACTTGT--------GGTCAAAATAAT------AGT--ACAGTTTTGGA-AAATGCTAAACAAGCAATTAATTCTCCAGCGATAAGTAAATA-TTA-----AAAGAA---------GGCATTGCTATAA---------------------------------------------------------------------------AAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GTGGG-ATCCAGT--CTGGTCGGCCCAGCCGTGCAACTCAAGGAGACTGT---TCCGTGAGTAGTAAACACA--------------TTTAAAC-----------------------------------------------------------------------------------------TATATGGCCAAGTAGGCTTTGCTTAA-----------TGAGTATTTAATT----------------------ACTATTAAA----A-------GTGATATCAATATCAAATGATCCATAGCA-----TT-------A------------------------------CT--------------A--------TGATAATTGCTATTGCATGAT--AATGTTTTGCTTTAATATTAATTGGTGGTTCAAGT-TAGC----AAAGCTTATT-TAA-----GTTAAC---------TAGAAACTATATTTAATCA----ATCCATTTCCCATTAGATCCAGTGTGGATCAGAATC---CTGGAATGAAGCCGAAGTCCGGTAAACAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATC---CTGGAATGAAGCCGA...............2111.00100000010000
.....................GGCCCAGCCGTGCAACTCAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGTCC..........2011.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGT............1811.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTGTGGATCAGAATC---CT............................2011.00100100000000
..........AGT--CTGGTCGGCCCAGCCGTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGAATC---CTGGAATGAAGCC.................2311.00100000010000
..............................GTGCAACTCAAGGAGACTGT---TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAATC---CTGGAATGAAGCCGAA..............2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................GAT--AATGTTTTGCTTTAATATTA......................................................................................................................................................2311.00101000000000
.......................CCCAGCCGTGCAACTCAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CTGGAATGAAGCCGAAGTCCGGT.......2611.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATC---CTGGAATGAAGCCGAAGTCC..........2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATGAAGCCGAAGTCCGGTA......2411.00101000000000
droEre2
GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTTCAACTCAAGGAGACTGT---ACCGTGAGTATTAATCCCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATGGTAAAGCAGGCTTTGCTTTA-----------TGAGCATTTAATT----------------------AATATTAAA----A-------TTGATATCAATATCAAATGATCCATATCA-----TT-------ACTATG--------------------ATA--CT--------------A--------TGA----TATTTCTGCACGAT--AATGTTGTGTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................AGCCGTTCAACTCAAGGAGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
....................TGGGCCAGCCGTTCAACTCAAGGAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
....G-ATCCAGT--CTGGTTGGGCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................CAACTCAAGGAGACTGT---ACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droSec2
GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTGCAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCCG------------------AAAC-----------------------------------------------------------------------------------------TAAATAGTATAGTAGGCATTGCA-----------------------------------------------------TTAAA----ATTCAGTTGTGATATCAATATCAAATGATTCATATCA-----TT-------A------------------------------CT--------------A--------TGATTAATGCAATTC---TAT--AATGTTTTGCTTAAATATTAATTGGTGGTTCAAGT-TAGA----AAAGCTTATC-TAT-----ATTTAC---------T---AACTATATTTAATCA----ATCGATTTCCCAATAGATCCAGTGTAGATCAGAATC---CTGGGATGAAAGCAAAGCCCGGCAAACAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................GGCCAGCCGTGCAGCTCAAGGAGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA----ATCGATTTCCCAATAG.....................................................2111.0010010
droSim2
GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTGCAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCCCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATAGTATAGTAGGCTTTTT----AAATAAC----TGAACATTGCA----------------------------TTAAA----ATTCAGTTGTGATATCAATATCAAATGATTCATATCA-----TT-------A------------------------------CT--------------A--------TTATTAATGCAATTG---TTT--AATGTTTTGCTTAAATATTAATTGGTGGTTCAAGT-TAGA----AAAGCTTATA-CAT-----ATTTAC---------T---AACTATATTTAATCA----ATCGATTTCCCCATAGATCCAGTGTAGATCAGAATC---CTGGGATGAAGGCAAAGCCCGGCAAACAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATCAGAATC---CTGGGATGAA....................2311.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATCAGAATC---CTGGGATGAAGGC.................2611.00100100000000000000
........................CCAGCCGTGCAGCTCAAGGAGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAGATCAGAATC---CTGGGAT.......................2311.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTAAATATTAATTGG.................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................TGATATCAATATCAA....................................................................................................................................................................................................................................................................................15200.05100000000001000000
dm3
GTGGG-ATCCAGT--CTGGTTGGGCCAGCCGTACAGCTCAAGGAGACCGA---ACCGTGAGTAGTGATCGCA--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATAGCAAAGTAGGCTTTAA----AAATAAC------AGCATTGCA----------------------------TTGAA----ATTCAGTTGTGATATCAATATCA---------TATCA-----TT-------A------------------------------CT--------------A--------TGATTATTGCAATTG---TAT--AATGTTTTGCTTCAATATTAATTGGTGGTTCAAGT-TAGA----AAATCATATC-TCAACTATTTTAAC---------T---GACTATATTAAATCA----ATCGATTTCCCAATAGATCCAGTGCGGATCAGAATC---CTGAGATGAAGGCGAAGCCTGGCAAACAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGCGGATCAGAATC---CTGAGAT.......................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATATTAATTGGTGGTTC...........................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGATCAGAATC---CTGAGATGAAGGC.................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................A--------------TTTAAAC-----------------------------------------------------------------------------------------TAAATAGCAAAGT....................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAATTGGTGGTTCAAGT-......................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATGAAGGCGAAGCC...........1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGTACAGCTCAAGGAGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGATCAGAATC---CTGA..........................1912.0020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGT-TAGA----AAATCATATC-TC.................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CTGAGATGAAGGCGAAGCCTGGC.......2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCGGATCAGAATC---CTGAGAT.......................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC---CTGAGATGAAGGCGAAGCCTGGC.......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
......ATCCAGT--CTGGTTGGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATCAGAATC---CTGAGATGAAGGC.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGCGGATCAGAATC---CTGAG.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATC---CTGAGATGAAGGCG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CTGAGATGAAGGCGAAGCCTGGCAAA....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATCAGAATC---CTGAGAC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATCAGAATC---CTGAGATGAAGG..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGAAGCCTGGCAAACA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTGGG-ATCCAGT--CTGGTTGGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGATCAGAATC---CTGAATC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGATCAGAATC---CTGAG.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATC---CTGAGATGAAGGCGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATC---CTGAGATGAAGGCG................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGATCAGAATC---CTGAGA........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CTGAGATGAAGGCGAAGCCTGGCAAA....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTGGTTGGGCCAGCCGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATCA----ATCGATTTCCCAATA......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTGCGGATCAGAATC---CTGA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G-ATCCAGT--CTGGTTGGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CTGAGATGAAGGCGAAGCCT..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......ATCCAGT--CTGGTTGGGCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGCGGATCAGAATC---CTGAGATG......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTGCGGATCAGAATC---CTGAGATG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................CCAGCCGTACAGCTCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTACAGCTCAAGGAGACCGA---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATC---CTGAGATGAAGGCGAAGCCTGGC.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAATCA----ATCGATTTCCCAATAG.....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGG-ATCCAGT--CTGGTTGGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAATC---CTGAGATGAAGGCG................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................GAA----ATTCAGTTGTGATATCAATA........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTGGG-ATCCAGT--CTGGTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CTGAGATGAAGGCGAAGCCTGGCA......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CTGAGATGAAGGCGAAGCCTGGCA......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGGCGAAGCCTGGCA......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
GTGGG-TTCCAGT--TTAGTTGGGCCAGCCGTGCAACTCAAGGAAACCGT---GTCGTGAGTAGTGATCCTAGAGAGAAACAAAAATTTGAACCAGACAATTATTAAGCAAGCTTAAA------------------------------ATTATATTTAAAAAGTTTTATTTTTGGGTCTAAATG-AAGATCTAGTAGGCTTTCA------------------------------------------------------TTAAACGATATTAGATTTTGATACCAGTGTCC----------------------------------ACATTGATATAATCAAGTAGCCTAT--ATAATAAATTATTAATCGTCTGCTTTTAAATC------AATTAG--AATGTTTTGCTTTAACATTAAAGGATGGTTCAAGT-TAGA----AAGATAT-CCGAAA-----TTATTA---------AATACATTCGT-TT----ATTACTTATATTTTTATACAGATCCACTGTGGATTCGAAAA---CCGGAACGGATATAAAACCCGCTAGACAGGSizeHit CountTotal NormTotal
No Reads
droBia1
GTGGG-TTCTAGT--CTCGTTGGACCAGCTGTGGAGCTTAAGGAAACCGT---ATCGTGAGTAGTGATCTCA-AAAGATCTTTGAATTTCTTTTATAAAATCATAAAGCAAGCTGTAAAAAAACCGATGATTCGTAATTTTACTTAGAATT-------------------------CCTGAATGAAAGATATAGTAGGCTCTGCTT----------------------------------------------------------------------TGATATCAA-ATCAAATCATCAA---------AT----TAATAT--TC--------------------ATA--TTATC---------------------AAAAAATATACCTG---AAT--AATGTTTTGCTTTAATATTAAATGGTGGTTCAAGT-GAGA----GAAGATGATA-TAA-----ATAAAA---------GATAAATTGTTCTAATCCC----TATCAATTCCCAACAGATCCAACGTGAATCCCAAGC---CAGGATCGGATTCAAAGCCCGAAAGGCAGGSizeHit CountTotal NormTotal
No Reads
droTak1
TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCAAGT---------------------TAATAT--CC--------------------CTTTT--ATAATATAATATTAA--------TATTAAATCGATCTG---AAT--AATGTTTTGCTTTAATGTCAAATGGTGGTTCAAGT-TAGT----AAAGAAGATT-ATA-----ATTTCC---------AAAACATTATTTTAACCAA----TATTAATTCCCAACAGATCCAGTGTGCAGCCGAAAC---CTGCAATGGATGCGAAACCCGCCAGAGAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GGCAA-AGTA----------------------------------------------------------------------------------------------------GGCTGTGATTGAATTTTTA---------------------------------------------------------------------------------------------A--------TATTATTC--------------------TAAT----TGCCATTTGTAGGCTTAGTTTGATTTGGGCCATATGAGAAAATTGGTTGCCTT--T--------------------------CTATC--T----ACTTA--------TAGTTAATCTTTCTG---TATCGAATGTTTTGCTTTAATGTCAAGTCCTGGTTCAAGT-TAGA----AAATGTC--TTAAA-----ATAACA---------GATAATCCATATTAAATAA----ATTAATTTTCCAACAGATCCAATGTAGAACCCAGAC---CTGGAATTGAACCGAAGCCCGGTAGACAAGSizeHit CountTotal NormTotal
No Reads
droRho1
AGTAG-GCTT---------------------------------------------------------------------------------------------------------TTATTAAATTAGTG---------------------------------------------------------------------------------------------A--------TTTTATTTTAATAGCCTTTTTAAAATG-----------TCAGATTTTATATTAACATCAAGTGGGCTATATCAGGAAGTT-------A------------------------------CG--------------A--------TAATAAGTCTGACTA---TAT--AATGTTTTGCTTTAACGTGAAATGGTGGTCTAAGT-TAGA----AAAGTGCATT-CAA-----ATTAGA---------GATAAACTATATTTATTTA----TTATATTTACCCTTAGAACCAGTTTGGATCCAAAAC---GCAGAATTGACCCAAAGCCCGCTGGACAAGSizeHit CountTotal NormTotal
No Reads
droFic1
GTGGG-ATCCAGT--CTGGTTGGCCCAGCCGTGCAGCTCAAGGAAACAAT---ATCGTGAGTAGATAG-----------------------TT-----------------------------------------------------------------------------------------TGTACACTATAGTAGGCTTTTTATAAGAATGACAAATTGATTGGGTGATT----------------------TC-----------------TTTTGATGCTAATGTTC----------------------------------ATATT---------------------------AAAGTATTACCCCTTCAATCTTAAATA------TATCAT--AATGTTTTGCTTTAATGTGAAGCGATGGTTCAAGT-TAGA----AAAGTTCATC-TGA-----TGGAAA---------AGCATTCCGATTTAAATCC----CTCGATTCCCCCACAGATCGAGCGCGAATCCGAAAC---CCGGAACCGATCCAAAGACCACCAGGCAGGSizeHit CountTotal NormTotal
No Reads
droKik1
GTCGG-TTCCAGC--CTGGTGGGACCAGCGGTGCAGCTCAAGGAGAACCA---GGGGTAAGTAATGAA------------------------------------------------------------------------------------------------------------------AAAAGAATAAAGCAGGCTTTACTTTA-----------------------------------------------------------------TTGT-------------------------------------------------------------------------------------------------------------------GAC--AATGTTTTGTTTTAATATAAAATGTTGGTTTAAGT-AAGG----AATAATTTTTTAGA-----ATGACTGAAACTGGAAATGA-------TT----AATATTTATGTTTTCTCTTAGATCTGGTGGGGATCCAAAGCCACCTGGCATCGAACCAG---CTCCCAGACAAGSizeHit CountTotal NormTotal
No Reads
droAna3
GTGGG-CTCTAGC--CTGGTAGGACCAGCTGTCCAGCTAAAGGAAGCAAT---TAAGTGAGTGGTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................GCTAAAGGAAGCAAT---TAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000010
droBip1
TGAGTTATCCAAAGATTG-T---------------------------------GTGAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTTTAATGAAATATTTTGTAGACCAAAGGC---CC----------AGCAACCGGCAAAGCAAGSizeHit CountTotal NormTotal
No Reads
dp5
GTCGG-CTCCAGT--CTGGTGGGTCCAGCGGTGCAGCTAAAGGAAACAACTGTGGGGTATGTAC---TCGTA--------------TTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--GAC------------------TTTGTGGCTCAAT----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................GGGTCCAGCGGTGCAGCTAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............CTGGTGGGTCCAGCGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........GT--CTGGTGGGTCCAGCGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................AAAGGAAACAACTGTGGGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100000000
droPer2
GTCGG-CTCCAGT--CTGGTGGGTCCAGCGGTGCAGCTGAAGGAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTCGG-TTCGAGT--CTAGTTGGCCCCGCCGTGCAATTGGAAGAGGCAAC---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTTCAATTGA-----GT-------A----------------------------------------------A--------TTATTAAAAGAATAT---TGA--AACATTAAGCTTAATTACTAAACAATTA-------------------------------------------------------------------------CTTCATTTCCA----------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......TCGAGT--CTAGTTGGCCCCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...........................GCCGTGCAATTGGAAGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
GTGGG-CTCTAGT--CTAGTCGGACCTGCGGTGCAGCTCAAGGAAACAGC---TGGGTAAGC-GTGACGTTT--------------TCTAAGC-----------------------------------------------------------------------------------------TCGATGTTTA-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------AATA----GTTTTT---ATT--GAAGTTGTATTTCATTGTGAAAAATTGTTGA---------------------------------------------------------------------------------------------------------------------------------------AAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........GT--CTAGTCGGACCTGCGGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000020000010000000000000000000000000000000000000000000000000
........................CCTGCGGTGCAGCTCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........CTAGT--CTAGTCGGACCTGCGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................AGTCGGACCTGCGGTGCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..........................TGCGGTGCAGCTCAAGGAAACAGC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
GTGGG-CTCCAGT--CTGGTCGGACCTGCGGTGCAGCTGCAGGAAACAAT---TGGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................GCAGCTGCAGGAAACAAT---TGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GTCGG-CTCCAGT--CTGGTCGGACCAGCGGTGCAGCTGGAGCAGCAGGA---GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGGTAAGTC--CC--------------------CAATT--GAGATATAAACTTGT--------GGTCAAAATAAT------AGT--ACAGTTTTGGA-AAATGCTAAACAAGCAATTAATTCTCCAGCGATAAGTAAATA-TTA-----AAAGAA---------GGCATTGCTATAA---------------------------------------------------------------------------AAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:07 AM