dya_110

Name	Class	Family	Strand
FW_DM	LINE	Jockey	+

GGTGTTGCAGTACTATCTGCAGCCGTAACAATGGACTCTAGTGTACCTGAACTGCTCTTCATATCAGATTCCGTGTTGAGTATTGGGTTTAGCTCAATGTGTGACAAATTCGGTTCTAGAGAGGTTTTTGTGGTGTATTATCAAGTGGTCGTGAACAAGTTCGTACATATGTATCACC *********************************...(((((((((.(((((.((((.......(((..(((((((..(((((((((...)))))))))..))))....))).))))))).)))))....)))))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M056 embryo	M043 female body	V120 male body	M026 head	V046 embryo	V058 head	SRR1275484 Male prepupae	V052 head	SRR1275488 Male larvae	GSM1528802 follicle cells	SRR1275486 Male prepupae
........................................................................................................CAAATTCGGTTCTAGAGAGGTTT...................................................	23	0	3	71583.33	214750	136605	52642	15257	3719	2727	1915	874	586	395	12	18
........................................................................................................CAAATTCGGTTCTAGAGAGGTT....................................................	22	0	3	7005.67	21017	8552	5805	3402	2345	168	478	61	160	32	12	2
........................................................................................................CGAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	2463.00	7389	7348	13	10	1	12	3	0	2	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTC...................................................	23	1	3	2283.00	6849	6785	16	7	34	2	4	1	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGTTT...................................................	23	1	3	2146.00	6438	6428	4	3	0	1	2	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTT...................................................	22	0	3	1531.33	4594	327	4141	89	3	16	13	2	3	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTT..................................................	24	0	2	1454.00	2908	1075	766	862	36	81	57	10	12	6	3	0
........................................................................................................CAAATTCGGTTCTAGAGAGGT.....................................................	21	0	3	1356.67	4070	964	1188	1335	276	34	153	51	49	20	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGTT...................................................	23	1	3	434.67	1304	1177	32	47	14	15	12	1	6	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGG......................................................	20	0	3	407.67	1223	110	392	590	49	10	32	25	10	5	0	0
........................................................................................................CTAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	374.33	1123	1120	1	1	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGTTTCTAGAGAGGTTT...................................................	23	1	3	255.00	765	311	432	12	3	0	4	3	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGTTT...................................................	23	1	3	254.00	762	36	720	5	0	0	1	0	0	0	0	0
........................................................................................................TAAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	234.67	704	661	19	9	0	11	2	1	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTC....................................................	22	1	3	171.67	515	470	4	8	29	1	3	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTT....................................................	21	0	3	166.00	498	12	459	16	8	1	2	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGTTT...................................................	23	1	3	155.33	466	110	353	2	0	1	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGTT....................................................	22	1	3	142.33	427	423	1	1	0	0	0	0	2	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGTTT...................................................	23	1	3	131.33	394	342	12	23	9	2	4	0	2	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGTTT...................................................	23	1	3	125.00	375	252	28	48	11	7	26	0	3	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGTT....................................................	22	1	3	119.33	358	358	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGTTC...................................................	23	2	3	117.33	352	352	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTTCTAGAGAGGTTT...................................................	21	0	3	113.00	339	56	252	28	0	0	3	0	0	0	0	0
........................................................................................................CAAATTCGGGTCTAGAGAGGTTT...................................................	23	1	3	103.33	310	240	12	29	4	5	17	0	3	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGATGTTT...................................................	23	1	3	101.33	304	261	19	10	0	1	7	2	4	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGTTC...................................................	23	2	3	99.00	297	297	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAG.......................................................	19	0	3	96.33	289	13	69	167	2	3	14	13	7	1	0	0
........................................................................................................CAAATTCTGTTCTAGAGAGGTTT...................................................	23	1	3	96.00	288	242	28	14	1	0	1	0	1	0	1	0
........................................................................................................CAAATTCGGTTCTAGAGAGTTTT...................................................	23	1	3	94.67	284	212	31	13	7	0	20	0	0	1	0	0
........................................................................................................CAAATTCGGTTATAGAGAGGTTT...................................................	23	1	3	89.00	267	246	3	10	4	1	3	0	0	0	0	0
........................................................................................................CGATTTCGGTTCTAGAGAGGTTT...................................................	23	2	3	88.00	264	264	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATGCGGTTCTAGAGAGGTTT...................................................	23	1	3	77.00	231	214	1	0	0	3	12	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGTGAGGTTT...................................................	23	1	3	73.33	220	210	3	1	0	1	5	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGC.....................................................	21	1	3	68.67	206	182	1	6	15	1	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTA..................................................	24	1	3	64.67	194	35	115	29	0	6	6	1	2	0	0	0
........................................................................................................CACATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	61.00	183	167	0	7	0	2	6	0	0	1	0	0
........................................................................................................CAAATTCAGTTCTAGAGAGGTTT...................................................	23	1	3	60.00	180	150	13	10	3	2	1	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGCTT...................................................	23	1	3	59.33	178	88	28	33	1	10	16	1	1	0	0	0
........................................................................................................GAAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	57.33	172	26	143	2	0	0	0	0	0	1	0	0
........................................................................................................CAAATTCGGTTCTGGAGAGGTTT...................................................	23	1	3	55.00	165	48	47	15	45	1	6	0	2	0	1	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTGT...................................................	23	1	3	52.67	158	3	150	1	0	2	0	0	2	0	0	0
.........................................................................................................AAATTCGGGTCTAGAGAGGTTT...................................................	22	1	3	51.67	155	0	155	0	0	0	0	0	0	0	0	0
.......................................................................................................ACAAATTCGGTTCTAGAGAGGTTT...................................................	24	0	3	50.33	151	100	44	3	1	3	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTG...................................................	23	1	3	48.67	146	126	11	2	5	0	1	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGGGGTTT...................................................	23	1	3	48.00	144	94	17	11	4	5	8	0	4	0	1	0
........................................................................................................CAAATTCGGTTCTAGGGAGGTTT...................................................	23	1	3	46.00	138	90	21	18	3	4	1	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGTTT....................................................	22	1	3	45.67	137	109	7	12	2	0	7	0	0	0	0	0
........................................................................................................CAAATTCGGATCTAGAGAGGTTT...................................................	23	1	3	43.33	130	87	10	20	6	3	4	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTCT...................................................	23	1	3	42.67	128	65	48	11	2	1	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTTT.................................................	25	0	2	41.00	82	16	28	31	1	3	3	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGATT...................................................	23	1	3	40.33	121	94	14	5	1	4	2	0	0	1	0	0
........................................................................................................CAAATTTGGTTCTAGAGAGGTTT...................................................	23	1	3	39.33	118	95	11	7	0	1	1	3	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTTT..................................................	23	0	2	37.50	75	12	52	9	0	0	2	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGTGGTTT...................................................	23	1	3	36.33	109	99	2	2	0	3	3	0	0	0	0	0
.......................................................................................................CCAAATTCGGTTCTAGAGAGGTTT...................................................	24	1	3	36.33	109	57	49	3	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTCCTAGAGAGGTTT...................................................	23	1	3	34.33	103	83	8	6	1	3	2	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTC..................................................	24	1	3	34.33	103	63	15	3	18	1	1	0	2	0	0	0
........................................................................................................CAAATTCGGTTCTAGAAAGGTTT...................................................	23	1	3	34.00	102	80	5	9	1	3	3	0	1	0	0	0
........................................................................................................CAGATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	32.33	97	34	26	21	4	2	8	0	2	0	0	0
............................................................................................................TTCGGTTCTAGAGAGGTTT...................................................	19	0	3	31.67	95	39	53	3	0	0	0	0	0	0	0	0
........................................................................................................CAAACTCGGTTCTAGAGAGGTTT...................................................	23	1	3	30.67	92	75	4	7	4	0	1	0	1	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGT.....................................................	20	0	3	30.67	92	0	81	9	2	0	0	0	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGTT....................................................	22	1	3	29.33	88	3	84	0	1	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTAT...................................................	23	1	3	28.67	86	27	59	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGT....................................................	22	1	3	28.00	84	57	7	10	5	2	1	0	2	0	0	0
.............................................................................................................TCGGTTCTAGAGAGGTTT...................................................	18	0	3	27.00	81	16	65	0	0	0	0	0	0	0	0	0
........................................................................................................AAAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	26.33	79	24	40	3	0	5	5	0	2	0	0	0
...........................................................................................................ATTCGGTTCTAGAGAGGTTT...................................................	20	0	3	26.00	78	32	39	7	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTTTAGAGAGGTTT...................................................	23	1	3	25.67	77	66	3	5	1	0	1	1	0	0	0	0
........................................................................................................CAAATTCCGTTCTAGAGAGGTTT...................................................	23	1	3	25.33	76	67	5	2	0	0	2	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	25.00	50	50	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	24.50	49	46	0	2	0	0	0	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGACAGGTTT...................................................	23	1	3	24.33	73	34	12	16	8	2	1	0	0	0	0	0
........................................................................................................CAACTTCGGTTCTAGAGAGGTTT...................................................	23	1	3	24.00	72	5	0	53	0	3	11	0	0	0	0	0
........................................................................................................CAAATTCGGTTCCAGAGAGGTTT...................................................	23	1	3	24.00	72	47	10	11	3	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTATAGAGGTTT...................................................	23	1	3	22.67	68	18	25	6	7	1	8	1	2	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTA...................................................	23	1	3	22.67	68	11	41	11	0	0	1	1	3	0	0	0
.........................................................................................................CAATTCGGTTCTAGAGAGGTTT...................................................	22	1	3	22.00	66	44	7	14	0	0	0	0	1	0	0	0
........................................................................................................CTAATTCGGTTCTAGAGAGGTT....................................................	22	1	3	22.00	66	65	1	0	0	0	0	0	0	0	0	0
........................................................................................................CAAAATCGGTTCTAGAGAGGTTT...................................................	23	1	3	22.00	66	63	2	0	0	0	1	0	0	0	0	0
.........................................................................................................AAATTCGGATCTAGAGAGGTTT...................................................	22	1	3	21.67	65	0	65	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTACAGAGGTTT...................................................	23	1	3	21.33	64	44	2	9	7	1	1	0	0	0	0	0
........................................................................................................CAAATTCGTTTCTAGAGAGGTT....................................................	22	1	3	20.67	62	19	36	5	1	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAAAGAGGTTT...................................................	23	1	3	20.33	61	49	9	2	1	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTGGAGAGGTT....................................................	22	1	3	20.33	61	1	11	12	33	0	1	0	2	0	1	0
........................................................................................................CTATTTCGGTTCTAGAGAGGTTT...................................................	23	2	3	19.67	59	59	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTGGGTTCTAGAGAGGTTT...................................................	23	1	3	19.00	57	50	3	2	0	1	1	0	0	0	0	0
........................................................................................................CTAATTCGGTTCTAGAGAGGTTC...................................................	23	2	3	18.33	55	55	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATCCGGTTCTAGAGAGGTTT...................................................	23	1	3	18.00	54	41	1	7	1	0	2	1	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGA........................................................	18	0	3	17.67	53	6	31	5	0	1	4	2	4	0	0	0
........................................................................................................CAAAGTCGGTTCTAGAGAGGTTT...................................................	23	1	3	17.67	53	49	0	1	0	1	2	0	0	0	0	0
.......................................................................................................TCAAATTCGGTTCTAGAGAGGTTT...................................................	24	1	3	17.67	53	0	53	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGTT....................................................	22	1	3	17.33	52	9	42	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGACGTTT...................................................	23	1	3	16.67	50	35	7	6	1	1	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGGTT...................................................	23	2	3	15.67	47	47	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAATTCGGTTCTAGAGAGGTT....................................................	22	1	3	15.67	47	42	1	2	2	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAAGTTT...................................................	23	1	3	15.33	46	36	5	2	0	3	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGT.....................................................	21	1	3	15.00	45	43	0	1	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGGTCTAGAGAGGTT....................................................	22	1	3	14.67	44	23	2	11	2	0	5	0	1	0	0	0
........................................................................................................CAAGTTCGGTTCTAGAGAGGTTT...................................................	23	1	3	14.67	44	29	7	2	1	2	3	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGCGGTTT...................................................	23	1	3	13.67	41	5	0	4	0	9	11	1	1	1	9	0
........................................................................................................CAAATTCGGTACTAGAGAGGTTT...................................................	23	1	3	13.67	41	37	4	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGGTTT.....................................................	21	3	9	13.33	120	82	12	16	10	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGGTT...................................................	23	2	3	12.67	38	38	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGTC...................................................	23	2	3	12.33	37	37	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GCAAATTCGGTTCTAGAGAGGTTT...................................................	24	1	3	12.00	36	0	36	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGG......................................................	19	0	3	12.00	36	0	33	3	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGT.....................................................	21	1	3	12.00	36	35	0	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGTT....................................................	22	1	3	12.00	36	17	8	5	1	0	4	0	1	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGTC....................................................	22	2	3	11.67	35	35	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTA....................................................	22	1	3	11.33	34	6	16	11	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTATAGAGAGGTT....................................................	22	1	3	11.00	33	30	0	2	0	1	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGGTT...................................................	23	2	3	10.67	32	32	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCTGTTCTAGAGAGGTT....................................................	22	1	3	10.67	32	20	5	4	3	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTTCTAGAGAGGTT....................................................	20	0	3	10.33	31	3	22	6	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTTGAGAGGTTT...................................................	23	1	3	10.33	31	22	4	2	0	3	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGTTT..................................................	24	1	2	10.00	20	17	1	2	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTGGAGAGGT.....................................................	21	1	3	10.00	30	0	4	5	9	0	9	0	3	0	0	0
........................................................................................................CAAATTCGGTTCTCGAGAGGTTT...................................................	23	1	3	9.67	29	6	1	1	0	2	15	0	0	3	1	0
........................................................................................................TAAATTCGGTTCTAGAGAGGTTC...................................................	23	2	3	9.67	29	29	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGCTCTAGAGAGGTTT...................................................	22	1	3	9.67	29	1	27	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTGTAGAGAGGTTT...................................................	23	1	3	9.67	29	27	1	0	0	0	0	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGG.....................................................	21	1	3	9.33	28	5	2	2	19	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGATTT...................................................	23	1	3	9.33	28	16	7	3	0	1	0	1	0	0	0	0
........................................................................................................CAAATTAGGTTCTAGAGAGGTTT...................................................	23	1	3	9.33	28	11	6	3	0	2	3	0	3	0	0	0
........................................................................................................CAAATTCGGTTCTAGCGAGGTTT...................................................	23	1	3	9.00	27	2	1	3	0	6	14	0	0	1	0	0
........................................................................................................CAATTTCGGTTCTAGAGATGTTT...................................................	23	2	3	9.00	27	27	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ACAAATTCGGTTCTAGAGAGGTT....................................................	23	0	3	9.00	27	13	11	0	2	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGTT....................................................	22	1	3	8.67	26	10	4	4	6	0	1	0	1	0	0	0
........................................................................................................CAAATTCGGTTCAAGAGAGGTTT...................................................	23	1	3	8.00	24	19	4	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATACGGTTCTAGAGAGGTTT...................................................	23	1	3	8.00	24	20	1	2	1	0	0	0	0	0	0	0
........................................................................................................CAAATTCTGTTCTAGAGAGGTTC...................................................	23	2	3	7.67	23	22	0	0	0	1	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGTC....................................................	22	2	3	7.67	23	23	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAGATTCGGTTCTAGAGAGGTT....................................................	22	1	3	7.33	22	1	4	10	6	1	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGATGTT....................................................	22	1	3	7.33	22	14	3	2	1	0	2	0	0	0	0	0
........................................................................................................CCAATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	7.33	22	4	0	9	0	2	7	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAAGGTTT....................................................	22	3	6	7.17	43	42	0	0	1	0	0	0	0	0	0	0
........................................................................................................CGATTTCGGTTCTAGAGAGGTT....................................................	22	2	3	7.00	21	21	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTG....................................................	22	1	3	7.00	21	0	17	0	4	0	0	0	0	0	0	0
........................................................................................................GAAATTCGGTTCTAGAGAGGTT....................................................	22	1	3	7.00	21	2	19	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGTTTT..................................................	24	1	2	7.00	14	0	14	0	0	0	0	0	0	0	0	0
........................................................................................................CAACTTCGGTTCTAGAGAGGTT....................................................	22	1	3	6.67	20	0	0	17	0	0	1	0	0	2	0	0
........................................................................................................CAAATTCGTTTCTAGAGAGGTTC...................................................	23	2	3	6.67	20	20	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGTGAGGTT....................................................	22	1	3	6.67	20	16	1	0	0	0	3	0	0	0	0	0
........................................................................................................CAAATTCGGTTCGAGAGAGGTTT...................................................	23	1	3	6.67	20	1	19	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTC...................................................	22	1	3	6.33	19	18	1	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGTTTCTAGAGAGGTTT...................................................	23	2	3	6.33	19	19	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGTTTTT..................................................	24	1	2	6.00	12	12	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGGGAGGTT....................................................	22	1	3	6.00	18	9	2	2	3	1	1	0	0	0	0	0
........................................................................................................CAAATGCGGTTCTAGAGAGGTT....................................................	22	1	3	6.00	18	14	0	1	0	1	2	0	0	0	0	0
........................................................................................................CAAATTCGGTTATAGAGAGGTTC...................................................	23	2	3	5.67	17	17	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGGGGTT....................................................	22	1	3	5.67	17	7	2	3	3	1	1	0	0	0	0	0
....................................................................................................GATCCAAATTCGGTTCTAGAGAGGTTT...................................................	27	3	2	5.50	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CTAATTCGGTTCTAGAGAGGGTT...................................................	23	2	3	5.33	16	16	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGTGAGGTTC...................................................	23	2	3	5.33	16	16	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGTT.....................................................	21	1	3	5.33	16	10	1	4	0	0	1	0	0	0	0	0
........................................................................................................CAATTTCGTTTCTAGAGAGGTTT...................................................	23	2	3	5.33	16	16	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGATCTAGAGAGGTT....................................................	22	1	3	5.00	15	13	0	0	0	0	1	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTAA.................................................	25	2	3	5.00	15	0	9	4	0	0	1	1	0	0	0	0
.........................................................................................................AAATTCGGGTCTAGAGAGGTT....................................................	21	1	3	5.00	15	0	15	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCTGTTCTAGAGAGGTTT...................................................	23	2	3	4.67	14	14	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGTTC...................................................	23	2	3	4.67	14	14	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGCGGTT....................................................	22	1	3	4.67	14	1	0	0	0	1	8	0	0	0	4	0
........................................................................................................CAACTTCGGTTCTAGAGAGGT.....................................................	21	1	3	4.67	14	0	0	12	0	0	2	0	0	0	0	0
........................................................................................................CATATTCGGTTCTAGAGAGGTTT...................................................	23	1	3	4.67	14	7	4	2	0	1	0	0	0	0	0	0
........................................................................................................CGATTTCGGTTCTAGAGAGGTTC...................................................	23	3	3	4.67	14	14	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGCTTT...................................................	23	1	3	4.67	14	3	3	4	2	0	2	0	0	0	0	0
........................................................................................................TGAATTCGGTTCTAGAGAGGTTT...................................................	23	2	3	4.67	14	13	0	0	0	1	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTTA..................................................	23	1	3	4.67	14	1	13	0	0	0	0	0	0	0	0	0
........................................................................................................CTAATTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	4.50	9	8	1	0	0	0	0	0	0	0	0	0
........................................................................................................CAACTTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	4.50	9	0	0	8	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGATGTTC...................................................	23	2	3	4.33	13	13	0	0	0	0	0	0	0	0	0	0
........................................................................................................CACATTCGGTTCTAGAGAGGTT....................................................	22	1	3	4.33	13	12	0	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGTTTCTAGAGAGGT.....................................................	21	1	3	4.00	12	1	10	1	0	0	0	0	0	0	0	0
.........................................................................................................AGATTCGGTTCTAGAGAGGTTT...................................................	22	1	3	4.00	12	9	2	0	0	1	0	0	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGT.....................................................	21	1	3	4.00	12	0	12	0	0	0	0	0	0	0	0	0
........................................................................................................TAAATTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	4.00	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTTTTT................................................	26	1	2	4.00	8	1	1	5	0	1	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTGGAGAGG......................................................	20	1	3	4.00	12	0	5	4	3	0	0	0	0	0	0	0
........................................................................................................CAAATGCGGTTCTAGAGAGGTTC...................................................	23	2	3	4.00	12	12	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GAATTCGGTTCTAGAGAGGTTT...................................................	22	1	3	4.00	12	0	12	0	0	0	0	0	0	0	0	0
........................................................................................................AAAATTCGGTTCTAGAGAGGTT....................................................	22	1	3	4.00	12	1	6	1	0	0	4	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGTTG...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CAATTCGGTTCTAGAGAGGTT....................................................	21	1	3	3.67	11	5	1	3	1	0	0	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGGGAGGTTC...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGTTTT...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGGC.....................................................	21	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGTTT....................................................	22	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGATAGGTTT...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGTTC...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAATTCGGTTCTAGAGAGGT.....................................................	21	1	3	3.67	11	7	2	2	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGCT....................................................	22	1	3	3.67	11	1	3	2	2	0	2	0	1	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGTGGTTT...................................................	23	2	3	3.67	11	11	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGCTTT..................................................	24	1	2	3.50	7	0	0	7	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGTTTT..................................................	24	1	2	3.50	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGTTTT..................................................	24	1	2	3.50	7	4	0	3	0	0	0	0	0	0	0	0
..........................................................................................................CATTCGGTTCTAGAGAGGTTT...................................................	21	1	3	3.33	10	6	0	4	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCCAGAGAGGTT....................................................	22	1	3	3.33	10	5	1	2	0	1	1	0	0	0	0	0
........................................................................................................CAAATTCCGTTCTAGAGAGGTT....................................................	22	1	3	3.33	10	8	0	2	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGATGTTT...................................................	23	2	3	3.33	10	10	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCAGTTCTAGAGAGGTT....................................................	22	1	3	3.33	10	6	1	3	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCAGTTCTAGAGAGGTTC...................................................	23	2	3	3.33	10	10	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTCCTAGAGAGGTT....................................................	22	1	3	3.33	10	3	4	3	0	0	0	0	0	0	0	0
.......................................................................................................CCAAATTCGGTTCTAGAGAGGTT....................................................	23	1	3	3.33	10	4	6	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGTTTT...................................................	23	2	3	3.33	10	10	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTATAGAGGTT....................................................	22	1	3	3.33	10	2	1	2	3	0	1	0	1	0	0	0
........................................................................................................CAAATTCGGGTCTAGAGAGGTTTT..................................................	24	1	2	3.00	6	2	0	4	0	0	0	0	0	0	0	0
........................................................................................................CACTTTCGGTTCTAGAGAGGTTT...................................................	23	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGTTC....................................................	22	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTGGGTTCTAGAGAGGTTT...................................................	23	2	3	3.00	9	8	0	0	0	0	1	0	0	0	0	0
........................................................................................................CAATTTCTGTTCTAGAGAGGTTT...................................................	23	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTG...................................................	22	1	3	3.00	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGATAGGTTT...................................................	23	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTATAGAGAGGTTT...................................................	23	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTGCTAGAGAGGTTT...................................................	23	1	3	3.00	9	1	1	1	0	2	3	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTTCT..................................................	24	1	2	3.00	6	3	1	1	0	1	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGGTT...................................................	22	1	3	3.00	9	3	5	1	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTGCTAGAGAGGTTT...................................................	21	1	3	3.00	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGT.....................................................	21	1	3	3.00	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGA.....................................................	21	1	3	3.00	9	0	5	4	0	0	0	0	0	0	0	0
.......................................................................................................CCAAATTCGGTTCTAGAGAGGTTC...................................................	24	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTACTAGAGAGGTTT...................................................	21	1	3	3.00	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTACAGAGGTTT...................................................	23	2	3	3.00	9	9	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTTCTAGAGAGGTTTT..................................................	22	0	2	3.00	6	2	2	2	0	0	0	0	0	0	0	0
........................................................................................................GAAATTCGGTTCTAGAGAGGT.....................................................	21	1	3	3.00	9	0	8	0	0	0	0	0	0	1	0	0
........................................................................................................CAAATTCGGATCTAGAGAGGTTC...................................................	23	2	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGACAGGTT....................................................	22	1	3	2.67	8	3	0	2	2	0	1	0	0	0	0	0
........................................................................................................CACATTCGGTTCTAGAGAGGTTC...................................................	23	2	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
............................................................................................................TTCGGTTCTAGAGAGGTTC...................................................	19	1	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAACTCGGTTCTAGAGAGGTT....................................................	22	1	3	2.67	8	6	0	1	1	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGAT....................................................	22	1	3	2.67	8	3	1	0	1	2	1	0	0	0	0	0
........................................................................................................CAAATTTGGTTCTAGAGAGGTT....................................................	22	1	3	2.67	8	6	0	1	1	0	0	0	0	0	0	0
........................................................................................................CAGATTCGGTTCTGGAGAGGTTT...................................................	23	2	3	2.67	8	0	3	4	1	0	0	0	0	0	0	0
........................................................................................................CAAATTTGGTTCTAGAGAGGTTC...................................................	23	2	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGTGGTT....................................................	22	1	3	2.67	8	4	1	0	0	0	3	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGGC.....................................................	21	2	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGGTCTAGAGAGGTTT...................................................	23	2	3	2.67	8	8	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGGGTTT....................................................	22	2	3	2.67	8	6	0	0	2	0	0	0	0	0	0	0
.........................................................................................................CAATTTCGTTCTAGAGAGGTTT...................................................	22	3	5	2.60	13	13	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGATGTTTT..................................................	24	1	2	2.50	5	3	0	2	0	0	0	0	0	0	0	0
........................................................................................................CACATTCGGTTCTAGAGAGGTTTT..................................................	24	1	2	2.50	5	2	0	2	0	0	1	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTTTT.................................................	24	0	2	2.50	5	0	4	1	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGGTCTAGAGAGGTTTT..................................................	23	1	2	2.50	5	0	5	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGGGGTTTT..................................................	24	1	2	2.50	5	2	2	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGGTCTAGAGAGGTTC...................................................	23	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGAGTTT....................................................	22	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTTCTAGAGAGGT.....................................................	19	0	3	2.33	7	0	7	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGTG...................................................	23	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGTTTCTAGAGAGGTGT...................................................	23	2	3	2.33	7	0	7	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGAGG......................................................	20	1	3	2.33	7	6	0	0	0	0	1	0	0	0	0	0
.......................................................................................................ACAAATTCGGTTCTAGAGAGGTTC...................................................	24	1	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGGGAGGTTT...................................................	23	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGGC....................................................	22	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGATAGGTTT...................................................	22	1	3	2.33	7	3	3	0	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGT.....................................................	21	1	3	2.33	7	2	1	2	1	0	1	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGTGAGGTTT...................................................	23	2	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTTCGGTTCTAGAGAGGTTT...................................................	21	1	3	2.33	7	7	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATGCGGTTCTAGAGAGGGTT...................................................	23	2	3	2.00	6	3	0	0	0	0	2	0	1	0	0	0
........................................................................................................CAAATGCGGGTCTAGAGAGGTTT...................................................	23	2	3	2.00	6	0	0	0	0	0	6	0	0	0	0	0
........................................................................................................CGCATTCGGTTCTAGAGAGGTTT...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CCAAATTCGGTTCTAGAGAGGTTTT..................................................	25	1	2	2.00	4	1	3	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGGTCTAGAGAGGTTC...................................................	22	2	3	2.00	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTCGAGAGGTT....................................................	22	1	3	2.00	6	0	0	0	0	2	2	0	1	0	1	0
.........................................................................................................AAAGTCGGTTCTAGAGAGGTTT...................................................	22	1	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGTTC...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTTTAGAGAGGTT....................................................	22	1	3	2.00	6	5	0	0	1	0	0	0	0	0	0	0
........................................................................................................CAAATGCGGTTCTAGAGAGGTTTT..................................................	24	1	2	2.00	4	4	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGTGAGGTTTT..................................................	24	1	2	2.00	4	3	0	1	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGCTCTAGAGAGGTTT...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGTCT...................................................	23	2	3	2.00	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCTGTTCTAGAGAGGT.....................................................	21	1	3	2.00	6	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGCTTCTAGAGAGGTTT...................................................	23	2	3	2.00	6	5	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AATTCGGTTCTAGAGAGG......................................................	18	0	3	2.00	6	1	4	0	1	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGATAGGTTG...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGTGAGGTTT...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGTGAGGTCT...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAAGTTTT..................................................	24	1	2	2.00	4	1	0	2	0	0	0	0	1	0	0	0
........................................................................................................CAAATTCGGTTCTAAAGAGGGTT...................................................	23	2	3	2.00	6	4	0	1	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGAGAGGTCC...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGGTTCTAGAGGGGTTT...................................................	23	2	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCTGTTCTAGAGAGGTTT...................................................	22	1	3	2.00	6	5	1	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGCTCTAGAGAGGGTT...................................................	23	2	3	2.00	6	4	0	0	0	0	2	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGTTA...................................................	22	1	3	2.00	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGTTTT..................................................	24	1	2	2.00	4	0	3	1	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGGTCTAGAGAGGGTT...................................................	23	2	3	2.00	6	5	0	0	0	1	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGGGAGGT.....................................................	21	1	3	2.00	6	2	1	2	0	0	1	0	0	0	0	0
........................................................................................................CAAATTCGATTCTAGAGAGGTGT...................................................	23	2	3	2.00	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATCCGGTTCTAGAGAGGTT....................................................	22	1	3	2.00	6	4	1	1	0	0	0	0	0	0	0	0
...........................................................................................................AGTCGGTTCTAGAGAGGTTT...................................................	20	1	3	2.00	6	6	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAAATCGGTTCTAGAGAGGTT....................................................	22	1	3	2.00	6	5	0	0	0	0	1	0	0	0	0	0
........................................................................................................CGAATTCGGGTCTAGAGAGGTTT...................................................	23	2	3	1.67	5	5	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGAATTCGATTCTAGAGAGGTTT...................................................	23	2	3	1.67	5	4	1	0	0	0	0	0	0	0	0	0
.........................................................................................................CAAATCGGTTCTAGAGAGGTTT...................................................	22	2	3	1.67	5	5	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGATCTAGAGAGGTTT...................................................	23	2	3	1.67	5	5	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAAATTCGGTTCTAGCGAGGTT....................................................	22	1	3	1.67	5	0	0	1	0	0	4	0	0	0	0	0
........................................................................................................CAAATTCGCTTCTAGAGAGGTGT...................................................	23	2	3	1.67	5	0	5	0	0	0	0	0	0	0	0	0
......................................................................................................TTCAAATTCGGTTCTAGAGAGGTTT...................................................	25	2	3	1.67	5	0	5	0	0	0	0	0	0	0	0	0
.........................................................................................................AAATTCGGTTCTAGAGAGGATT...................................................	22	1	3	1.67	5	1	3	0	0	1	0	0	0	0	0	0
.......................................................................................................ACATATTCGGTTCTAGAGAGGTTT...................................................	24	1	3	1.67	5	5	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAACTTCGGTTCTAGAGAGG......................................................	20	1	3	1.67	5	0	0	5	0	0	0	0	0	0	0	0
........................................................................................................CAATTTCGGTTCTAGAGGGGTTT...................................................	23	2	3	1.67	5	5	0	0	0	0	0	0	0	0	0	0

CCACAACGTCATGATAGACGTCGGCATTGTTACCTGAGATCACATGGACTTGACGAGAAGTATAGTCTAAGGCACAACTCATAACCCAAATCGAGTTACACACTGTTTAAGCCAAGATCTCTCCAAAAACACCACATAATAGTTCACCAGCACTTGTTCAAGCATGTATACATAGTGG *********************************...(((((((((.(((((.((((.......(((..(((((((..(((((((((...)))))))))..))))....))).))))))).)))))....)))))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M056 embryo
......................................................................................................CTGTTTAAGCCTAGATCCCA........................................................	20	3	7	0.57	4	4
......................................................................................................CTGTTTAAGCCAAGATGTCACA......................................................	22	3	4	0.25	1	1
......................................................................................................CTGTTTAAGCCTAGATCTCCCG......................................................	22	3	4	0.25	1	1
......................................................................................................CTGTTTAAGCCTAGATGTCACC......................................................	22	3	4	0.25	1	1
......................................................................................................CTGTTTAAGCCTAGATTTCTCA......................................................	22	3	4	0.25	1	1
......................................................................................................CTGTTTAAGCCTAGATTT..........................................................	18	2	13	0.15	2	2
......................................................................................................TTGTTTAAGCCTAGATCCCT........................................................	20	3	9	0.11	1	1
.......................................................................................................TGTTTAAGCCTAGATCCCA........................................................	19	3	20	0.10	2	2

Species	Coordinate	ID	Type	Alignment
droYak3	v2_chrUn_5709:227691-227868 -	dya_110	candidate-rescued	GGTGTTGCAGTA----CTATCTGCAGCCGTAACAATGG--------ACTCTAGTGTACCTGAACTGCTC--------TTCATATCAGATTC------CGTGTTGAGTATTGGGTTTAGCTCAATGTGTGACAAATTCGGT--------TCTAGAGAGGTTTTTGTGGTGT-----ATTATCAAGTGGT----------------------------CGTGAACAAGTTC----G-----TACATATGTATCACC
droEre2	scaffold_4784:23548909-23549000 -			GGTGTTGAAATA----CGAGCTGCC--------AGTGG--------ATTCTAGTGTTGCTGTGGAATTC--------TCTATATCAGATTC------TTTCTTGAGTTGTGGGCTTTACTAAAGGT--------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_51:183605-183756 -			GGTGTAGCTGTA----CGAGATGCTGCCGTAAGAATGG--------ATTCTAGTAAACCTGCCAAGATC--------TTTTTATCAGATTC------AGTGTTGAGTTTTAAGATTAGCTCAATGCGTGAACTTATATATTTTGTATACCTGAGCAAGTTTGTTTGGTGT-----GAAATCAA-----------------------------------------------------------------------
droSim2	node_36:3071-3174 -			GGTGTTGCTTTA----CGAGCTGCTTCCGTAAGAATGG--------ATTCCAGTGTACCTGTGCAGCTC--------TCTATATCAGATTC------AGTATTGTGTTTTGGGCTTAGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:454756-454858 -			GGTTTTGCATTA----CGAGCTGCTTTCGTAAGAATGA--------ATTCCAGTGTACCTGTGCAGCTC--------TTTATATCAGATTC------AGTATTGGGT-TTGGACTTAACTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409825:16137-16240 -			GGTGTTGAAGCT----CAAGCTCCAGAGACGAGTATAG--------ACTCTGGTGAATTACCAAACCTG--------TCTACGTCGGCTTC------ATTGTTGAGATGAGGACCTTGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302155:2026136-2026283 +			CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTGTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATGTCCATCGTAAAACGCATTTTGAGTGAAAAAGAAATGGAGTGATAAAGTGAACCCGAGAAC-----ATGTTTCACT
droTak1	scf7180000415671:411455-411606 +			CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTTTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATATCCATCGATAA-AACATTTAAAGTGAAACTGAAATGAAGTGAAAAAGTGAAACTAAAAACGAAATATATAAAAAC
droEle1	scf7180000491321:6205-6308 +			GGTGTGGAAACT----CGAGCCGCAGTGACGAGTACGG--------ACTCCAGTGTAGTTACAAAGCTG--------TCTATGTCAGCTTC------CTCGTTGAGGCGAGGACATAGCTCAATATGTGA----------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779496:8576-8695 +			GGTGTTGAAACT----TGATCTGCAGAGACGAGTACAG--------ACTCCAGTGAATTAACAAATCTG--------TCTACGTTGGCTTC------ATCGTTGAGATGAGGACTTAGCTCAATGTGTGAGCTAATGTAT------------------------------------------------------------------------------------------------------------TTCTAG
droFic1	scf7180000453835:71933-72050 -			CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTTTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATGTCCATCGAAAAAGTGATCTC------------------------------AGCTGATATT-----AAACTTTACC
droKik1	scf7180000302735:9167-9270 -			GGTGTTGAGATC----CTAACTGCAGTCACAAGTTCCT--------CTTCCAGACCGGAGGTGGAGGAG--------TCGATGTCCGCTTC------AGTATTGAGCTGGGGGGCTAGCTCAATGTGGGA----------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_9019:2919-3083 +			GGTATTGAAGCT----CGAGCTGCAGAGACGAGTACAG--------ACTCCAGTGAATTAACAAAGCTG--------TCTACGTTGGCTTC------CTCGTTGAGGTGACGACTTAGCTCGATATGTGAGCTAATCTACTTTCTGTACATAATCCAGTTGGTTTCTTGTGGGGTCCATTTTAATGGT----------------------------T-----------------------------------GT
droBip1	scf7180000395035:1474-1577 +			TGTGTTGAAACT----CGAGCTGCAGAGACGAGTACAG--------ACTCCAGCGAAATAACAAAACTG--------TCTTCGTTGGCTTC------GTCGCTGAGGTGAGGATTCAGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_singleton_799:1166-1249 -			AGAATTTCCATA----CT-------TTCGCGGAAACAG--------ATTCTAATATTGTTTCGCA------------------TTATTCCGTGGGT------CAGGTCTAGGTTGCAGTTAAATGTG-------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_183:34478-34530 -			GAACCGCTC--------------------------------------------------------------------CTAAGACTGCATCT------CATGGCGAGTATTCGGCCTAGTTTAATCTG-------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004577:3663082-3663190 -			TTTTTTGCATAA----TTATCTAAACTGAAAACTACAA--------CTTTT--------------GTTC--------TTTATATTGATTGA---AT-TGAATTGAGTTTTGAATTTAATTAAATATTTGT------ATGT--------TCTACTGAGA---------------------------------------------------------------------------------------------TTT
droVir3	scaffold_13049:2946349-2946433 +			CGAGTGGCCACA----ATAACAGCAACAGCAACAAAG------------------TATTTGCACTGCAT--------TCAATGAAAGCA------------------TAAAGAAATTCT-------------TATCG------------------------------------------------------------------------------------------------------------AGTATCTGG
droMoj3	scaffold_4206:814-926 +			TGTATATATGTATCC-ATATCTATGGATATAAATATAAGTTAAGCGCTCCCGTACTAGAGTACTAGTGA--------TTGGGGG---ACGC------TGTG-------TTGGGTTTTTGTGAATATATAACAAC--------------------------------------------------------------------------------------------------------------------TTCG
droGri2	scaffold_15074:5711536-5711597 -			AATTATGCATTT----CCATTTTCAGCGGCAACTGCTC-----------------------AACTGATC--------TTTATAAATAATTC------CTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

GGTGTTGCAGTA----CTATCTGCAGCCGTAACAATGG--------ACTCTAGTGTACCTGAACTGCTC--------TTCATATCAGATTC------CGTGTTGAGTATTGGGTTTAGCTCAATGTGTGACAAATTCGGT--------TCTAGAGAGGTTTTTGTGGTGT-----ATTATCAAGTGGT----------------------------CGTGAACAAGTTC----G-----TACATATGTATCACC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTT.............................................................................................	23	3	71583.33	214750	3719	52642	136605	2727	586	1915	15257	395	18	874	12
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTT..............................................................................................	22	3	7005.67	21017	2345	5805	8552	168	160	478	3402	32	2	61	12
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTC.............................................................................................	23	3	2283.00	6849	34	16	6785	2	0	4	7	0	0	1	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTT.............................................................................................	22	3	1531.33	4594	3	4141	327	16	3	13	89	0	0	2	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTT............................................................................................	24	2	1454.00	2908	36	766	1075	81	12	57	862	6	0	10	3
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGT...............................................................................................	21	3	1356.67	4070	276	1188	964	34	49	153	1335	20	0	51	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGG................................................................................................	20	3	407.67	1223	49	392	110	10	10	32	590	5	0	25	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTC..............................................................................................	22	3	171.67	515	29	4	470	1	0	3	8	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTT..............................................................................................	21	3	166.00	498	8	459	12	1	0	2	16	0	0	0	0
....................................................................................................................................AATTCGGT--------TCTAGAGAGGTTT.............................................................................................	21	3	113.00	339	0	252	56	0	0	3	28	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAG.................................................................................................	19	3	96.33	289	2	69	13	3	7	14	167	1	0	13	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGC...............................................................................................	21	3	68.67	206	15	1	182	1	0	1	6	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTA............................................................................................	24	3	64.67	194	0	115	35	6	2	6	29	0	0	1	0
.................................................................................................................................ACAAATTCGGT--------TCTAGAGAGGTTT.............................................................................................	24	3	50.33	151	1	44	100	3	0	0	3	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTG.............................................................................................	23	3	48.67	146	5	11	126	0	1	1	2	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTTT...........................................................................................	25	2	41.00	82	1	28	16	3	0	3	31	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTTT............................................................................................	23	2	37.50	75	0	52	12	0	0	2	9	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTC............................................................................................	24	3	34.33	103	18	15	63	1	2	1	3	0	0	0	0
......................................................................................................................................TTCGGT--------TCTAGAGAGGTTT.............................................................................................	19	3	31.67	95	0	53	39	0	0	0	3	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGT...............................................................................................	20	3	30.67	92	2	81	0	0	0	0	9	0	0	0	0
.......................................................................................................................................TCGGT--------TCTAGAGAGGTTT.............................................................................................	18	3	27.00	81	0	65	16	0	0	0	0	0	0	0	0
.....................................................................................................................................ATTCGGT--------TCTAGAGAGGTTT.............................................................................................	20	3	26.00	78	0	39	32	0	0	0	7	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTA.............................................................................................	23	3	22.67	68	0	41	11	0	3	1	11	0	0	1	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGA..................................................................................................	18	3	17.67	53	0	31	6	1	4	4	5	0	0	2	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGG................................................................................................	19	3	12.00	36	0	33	0	0	0	0	3	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTA..............................................................................................	22	3	11.33	34	0	16	6	0	0	1	11	0	0	0	0
....................................................................................................................................AATTCGGT--------TCTAGAGAGGTT..............................................................................................	20	3	10.33	31	0	22	3	0	0	0	6	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGG...............................................................................................	21	3	9.33	28	19	2	5	0	0	0	2	0	0	0	0
.................................................................................................................................ACAAATTCGGT--------TCTAGAGAGGTT..............................................................................................	23	3	9.00	27	2	11	13	0	0	1	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTG..............................................................................................	22	3	7.00	21	4	17	0	0	0	0	0	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTC.............................................................................................	22	3	6.33	19	0	1	18	0	0	0	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTAA...........................................................................................	25	3	5.00	15	0	9	0	0	0	1	4	0	0	1	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTTA............................................................................................	23	3	4.67	14	0	13	1	0	0	0	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTTTTTT..........................................................................................	26	2	4.00	8	0	1	1	1	0	0	5	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTG.............................................................................................	22	3	3.00	9	0	9	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGA...............................................................................................	21	3	3.00	9	0	5	0	0	0	0	4	0	0	0	0
....................................................................................................................................AATTCGGT--------TCTAGAGAGGTTTT............................................................................................	22	2	3.00	6	0	2	2	0	0	0	2	0	0	0	0
......................................................................................................................................TTCGGT--------TCTAGAGAGGTTC.............................................................................................	19	3	2.67	8	0	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTTTT...........................................................................................	24	2	2.50	5	0	4	0	0	0	0	1	0	0	0	0
....................................................................................................................................AATTCGGT--------TCTAGAGAGGT...............................................................................................	19	3	2.33	7	0	7	0	0	0	0	0	0	0	0	0
.................................................................................................................................ACAAATTCGGT--------TCTAGAGAGGTTC.............................................................................................	24	3	2.33	7	0	0	7	0	0	0	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGGC..............................................................................................	22	3	2.33	7	0	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................AATTCGGT--------TCTAGAGAGG................................................................................................	18	3	2.00	6	1	4	1	0	0	0	0	0	0	0	0
..................................................................................................................................CAAATTCGGT--------TCTAGAGAGGTCC.............................................................................................	23	3	2.00	6	0	0	6	0	0	0	0	0	0	0	0
...................................................................................................................................AAATTCGGT--------TCTAGAGAGGTTA.............................................................................................	22	3	2.00	6	0	6	0	0	0	0	0	0	0	0	0

droEre2

GGTGTTGAAATA----CGAGCTGCC--------AGTGG--------ATTCTAGTGTTGCTGTGGAATTC--------TCTATATCAGATTC------TTTCTTGAGTTGTGGGCTTTACTAAAGGT--------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droSec2

GGTGTAGCTGTA----CGAGATGCTGCCGTAAGAATGG--------ATTCTAGTAAACCTGCCAAGATC--------TTTTTATCAGATTC------AGTGTTGAGTTTTAAGATTAGCTCAATGCGTGAACTTATATATTTTGTATACCTGAGCAAGTTTGTTTGGTGT-----GAAATCAA-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................GTATACCTGAGCAAGTTTGTTTG........................................................................................	23	1	1.00	1	1	0	0	0

droSim2

GGTGTTGCTTTA----CGAGCTGCTTCCGTAAGAATGG--------ATTCCAGTGTACCTGTGCAGCTC--------TCTATATCAGATTC------AGTATTGTGTTTTGGGCTTAGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........TA----CGAGCTGCTTCCGTAAGAATGG--------A...............................................................................................................................................................................................................	25	1	42.00	42	0	0	0	0	0	0	32	2	7	1	0	0	0	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGTTTTGGGC............................................................................................................................................	25	1	25.00	25	0	0	1	0	0	0	10	0	8	1	5	0	0	0	0	0	0
.............................................................TGCAGCTC--------TCTATATCAGATTC------AGTA.........................................................................................................................................................	26	2	18.00	36	0	0	0	0	0	0	15	9	4	7	0	0	1	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGTTTTGGG.............................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	8	1	0	0	0	0	0	0	0
.........TTA----CGAGCTGCTTCCGTAAGAATGG--------A...............................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	1	1	4	0	0	0	0	0	0	0	0
........TTTA----CGAGCTGCTTCCGTAAGAATGG--------A...............................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGTTTTGGGCT...........................................................................................................................................	26	1	3.00	3	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.............................................................TGCAGCTC--------TCTATATCAGATTC------AGTAT........................................................................................................................................................	27	2	2.50	5	0	0	0	0	0	0	1	1	0	1	0	0	2	0	0	0	0
.........................................................................................TC------AGTATTGTGTTTTGGGCTTAGCT......................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................TCCGTAAGAATGG--------ATTCC...........................................................................................................................................................................................................	18	2	1.50	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
......GCTTTA----CGAGCTGCTTCCGTAAGAATGG--------A...............................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TC------AGTATTGTGTTTTGGGC............................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TTCCAGTGTACCTGTGCAGCTC--------TCTA.............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGTTTTGG..............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................TC------AGTATTGTGTTTTGGGCTTAGC.......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................TTCCAGTGTACCTGTGCAGCTC--------TCTATA...........................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGAA..................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................AGAATGG--------ATTCCAGTGTACCTGTGCAGC...........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TCAGATTC------AGTATTGTGTTTTG...............................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TGTACCTGTGCAGCTC--------TCTATA...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....TGCTTTA----CGAGCTGCTTCCGTAAGA............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................TC------AGTATTGTGTTTTGGGCTTAGCTCAA...................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................TGG--------ATTCCAGTGTACCTGTGCAGCTC--------.................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................AGCTC--------TCTATATCAGATTC------AGTATT.......................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................TAAGAATGG--------ATTCCAGT........................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................GCTGCTTCCGTAAGA............................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................TGCAGCTC--------TCTATATCA........................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................TGCAGCTC--------TCTATATCAGA......................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................TGCAGCTC--------TCTATATCAGATTC------AGTATT.......................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................GCAGCTC--------TCTATATCAGATTC------AGTA.........................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TTAGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------	16	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................CAGCTC--------TCTATATCAGATTC------AGTA.........................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................GCAGCTC--------TCTATATCAGATTC------AGTATT.......................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................CTATATCAGATTC------AGTA.........................................................................................................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................AGCTC--------TCTATATCAGATTC------AGT..........................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................TC--------TCTATATCAGATTC------AGTAT........................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................C--------TCTATATCAGATTC------AGT..........................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

GGTTTTGCATTA----CGAGCTGCTTTCGTAAGAATGA--------ATTCCAGTGTACCTGTGCAGCTC--------TTTATATCAGATTC------AGTATTGGGT-TTGGACTTAACTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................TATCAGATTC------AGTATTGGGT-TTGGA.............................................................................................................................................	25	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TATATCAGATTC------AGTATTGGG....................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAGATTC------AGTATTGGGT-TT................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATCAGATTC------AGTATTGGGT-TTGGACT...........................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATCAGATTC------AGTATTGGGT-TT................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
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................................................TCCAGTGTACCTGTGCAGCTC--------TTT..............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTGCTTTCGTAAGAATGA--------ATTCCAG.........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCTC--------TTTATATCAGATTC------AGT..........................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TC--------TTTATATCAGATTC------AGT..........................................................................................................................................................	19	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TTTATATCAGATTC------AGTATT.......................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TTTATATCAGATTC------AGTATTG......................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................C--------TTTATATCAGATTC------AGTATC.......................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATCAGATTC------AGTATTGGT....................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATCAGATTC------AGTATTGGAA-A.................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GGTGTTGAAGCT----CAAGCTCCAGAGACGAGTATAG--------ACTCTGGTGAATTACCAAACCTG--------TCTACGTCGGCTTC------ATTGTTGAGATGAGGACCTTGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTGTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATGTCCATCGTAAAACGCATTTTGAGTGAAAAAGAAATGGAGTGATAAAGTGAACCCGAGAAC-----ATGTTTCACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTTTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATATCCATCGATAA-AACATTTAAAGTGAAACTGAAATGAAGTGAAAAAGTGAAACTAAAAACGAAATATATAAAAAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGTGTGGAAACT----CGAGCCGCAGTGACGAGTACGG--------ACTCCAGTGTAGTTACAAAGCTG--------TCTATGTCAGCTTC------CTCGTTGAGGCGAGGACATAGCTCAATATGTGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGTGTTGAAACT----TGATCTGCAGAGACGAGTACAG--------ACTCCAGTGAATTAACAAATCTG--------TCTACGTTGGCTTC------ATCGTTGAGATGAGGACTTAGCTCAATGTGTGAGCTAATGTAT------------------------------------------------------------------------------------------------------------TTCTAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTACCCTGTAGATCCGA-ATTT-----------------------------------------------GTTTTATA------CTAGCTTTAAGGAC----------------------------------AAATTCGGT--------TCTAGAGAGGTTTGTGTGGTTC-----AATGTCCATCGAAAAAGTGATCTC------------------------------AGCTGATATT-----AAACTTTACC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGTGTTGAGATC----CTAACTGCAGTCACAAGTTCCT--------CTTCCAGACCGGAGGTGGAGGAG--------TCGATGTCCGCTTC------AGTATTGAGCTGGGGGGCTAGCTCAATGTGGGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGTATTGAAGCT----CGAGCTGCAGAGACGAGTACAG--------ACTCCAGTGAATTAACAAAGCTG--------TCTACGTTGGCTTC------CTCGTTGAGGTGACGACTTAGCTCGATATGTGAGCTAATCTACTTTCTGTACATAATCCAGTTGGTTTCTTGTGGGGTCCATTTTAATGGT----------------------------T-----------------------------------GT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................TAACAAAGCTG--------TCTACGTTGGCTTC------C............................................................................................................................................................	26	14	0.14	2	0	2	0	0	0	0
.........................................................TTAACAAAGCTG--------TCTACGTTGGC......................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................TAATCCAGTTGGTTTCTTGTGGGGTCC.............................................................................	27	17	0.06	1	1	0	0	0	0	0
......................................................................................................................CTCGATATGTGAGCTAATCTACTTT...............................................................................................................	25	17	0.06	1	1	0	0	0	0	0
..................................................................................................................................................TACATAATCCAGTTGGTTTCTTG.....................................................................................	23	17	0.06	1	1	0	0	0	0	0
..................................................................................................TCGTTGAGGTGACGACTTAGCTCGA...................................................................................................................................	25	17	0.06	1	1	0	0	0	0	0
........................................................................................TTC------CTCGTTGAGGTGACGACTTAGC.......................................................................................................................................	25	17	0.06	1	0	0	1	0	0	0
.........................................................................................................................................................TCCAGTTGGTTTCTTGTGGGG................................................................................	21	17	0.06	1	1	0	0	0	0	0
.....TGAAGCT----CGAGCTGCAGAGAC................................................................................................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0
...........T----CGAGCTGCAGAGACGAGTACAG--------A...............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................TGAATTAACAAAGCTG--------TCTACGTTGG.......................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.......................................................AATTAACAAAGCTG--------TCTACGT..........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
................CGAGCTGCAGAGACGAGTACAG--------AC..............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droBip1

TGTGTTGAAACT----CGAGCTGCAGAGACGAGTACAG--------ACTCCAGCGAAATAACAAAACTG--------TCTTCGTTGGCTTC------GTCGCTGAGGTGAGGATTCAGCTCAATGTGTGA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAATTTCCATA----CT-------TTCGCGGAAACAG--------ATTCTAATATTGTTTCGCA------------------TTATTCCGTGGGT------CAGGTCTAGGTTGCAGTTAAATGTG-------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022

Male-body

M040

Female-body

M059

Embryo

M062

Head

V043

Embryo

V051

Head

V112

Male-body

SRR902010

Ovary

SRR902011

Testis

SRR902012

CNS imaginal disc

No Reads

droPer2

GAACCGCTC--------------------------------------------------------------------CTAAGACTGCATCT------CATGGCGAGTATTCGGCCTAGTTTAATCTG-------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TTTTTTGCATAA----TTATCTAAACTGAAAACTACAA--------CTTTT--------------GTTC--------TTTATATTGATTGA---AT-TGAATTGAGTTTTGAATTTAATTAAATATTTGT------ATGT--------TCTACTGAGA---------------------------------------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

CGAGTGGCCACA----ATAACAGCAACAGCAACAAAG------------------TATTTGCACTGCAT--------TCAATGAAAGCA------------------TAAAGAAATTCT-------------TATCG------------------------------------------------------------------------------------------------------------AGTATCTGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.........ACA----ATAACAGCAACAGCAAC.............................................................................................................................................................................................................................	20	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGTATATATGTATCC-ATATCTATGGATATAAATATAAGTTAAGCGCTCCCGTACTAGAGTACTAGTGA--------TTGGGGG---ACGC------TGTG-------TTGGGTTTTTGTGAATATATAACAAC--------------------------------------------------------------------------------------------------------------------TTCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................TAGAGTACTAGTGA--------TTGGG............................................................................................................................................................................	19	20	0.85	17	13	4	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACGC------TG...........................................................................................................................................................	27	20	0.50	10	10	0	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---AC.....................................................................................................................................................................	23	20	0.50	10	8	2	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACGC------T............................................................................................................................................................	26	20	0.40	8	8	0	0	0	0	0
.......................................................................................ACGC------TGTG-------TTGGGTTTTTGTGAAC..................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1
.......................................................TAGAGTACTAGTGA--------TTGG.............................................................................................................................................................................	18	20	0.25	5	5	0	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACGC------.............................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---.......................................................................................................................................................................	21	20	0.25	5	5	0	0	0	0	0
........................................................AGAGTACTAGTGA--------TTGGGGG---ACG....................................................................................................................................................................	23	20	0.15	3	3	0	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGG...........................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	3
.......................................................TAGAGTACTAGTGA--------TTGGGGG---A......................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	3
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACG....................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
....................................................TACTAGAGTACTAGTGA--------TTGGGG...........................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................TTAAGCGCTCCCGTACTAGAG..................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................TAGTGA--------TTGGGGG---ACGC------TGTG-------TTGGG.............................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...................................................GTACTAGAGTACTAGTGA--------TTGGGGG---AC.....................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
........................................................AGAGTACTAGTGA--------TTGGGGG---AT.....................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACGG------.............................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................TAGAGTACTAGTGA--------TTGGGGG---ACT....................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...........................................................GTACTAGTGA--------TTGGGGG---ACGC------TGTA-------..................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................GTGA--------TTGGGGG---ACGC------TGTG-------TTGGG.............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..................................................CGTACTAGAGTACTAGTGA--------TTGGGGG---.......................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................TACTAGAGTACTAGTGA--------TTGGGGG---.......................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................................................GAGTACTAGTGA--------TTGGGGG---.......................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................TTGGGGG---ACGC------TGTG-------TTGGGT............................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

AATTATGCATTT----CCATTTTCAGCGGCAACTGCTC-----------------------AACTGATC--------TTTATAAATAATTC------CTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_110

v2_chrUn_5709:227741-227818 -

candidate-rescued

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.1	-23.0	-22.9