ID:

dya_11

 Coordinate:

3R:481120-481176 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.2 -42.9

Flybase annnotation

intron [Dyak\GE25403-in]; utr5 [utr5_plus_9305]

No Repeatable elements found

Sense Strand Reads

CGCTATACATTACGTGCCTTGAAATGGCAAAACCAGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAGACAACACAGGACCACTAAAAAAAAATGTGTTAGC

***********************************.((((..((.(((((((.((((((((..(((((((((.(((...))).)))))))))..)))))))).))))))).)).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V058

head

 V052

head

 V120

male body		 M056

embryo

 V046

embryo

 M043

female body

 M026

head

 SRR1275484

Male prepupae
..................................................AAATTGACTCTAGTAGGGAGTC..................................................................................... 22 0 1 9518.00 9518 5712 1649 456 1193 264 217 27 0
..................................................AAATTGACTCTAGTAGGGAGT...................................................................................... 21 0 1 8797.00 8797 4267 1325 1883 563 529 127 103 0
.....................................................................................CTCCCTAACGGAGTCAGATTG................................................... 21 0 1 4517.00 4517 2752 1536 8 3 11 180 27 0
..................................................AAATTGACTCTAGTAGGGAGTCA.................................................................................... 23 1 1 1529.00 1529 1049 360 42 10 9 57 2 0
..................................................AAATTGACTCTAGTAGGGAGTCT.................................................................................... 23 1 1 858.00 858 543 140 35 100 10 26 4 0
.....................................................................................CTCCCTAACGGAGTCAGATTGA.................................................. 22 0 1 639.00 639 404 195 2 14 6 16 1 1
..................................................AAATTGACTCTAGTAGGG......................................................................................... 18 0 1 389.00 389 213 90 0 2 0 4 80 0
..................................................AAATTGACTCTAGTAGGGAG....................................................................................... 20 0 1 375.00 375 192 70 30 21 2 11 49 0
..................................................AAATTGACTCTAGTAGGGT........................................................................................ 19 1 1 183.00 183 114 50 9 0 0 1 9 0
......................................................................................TCCCTAACGGAGTCAGATTGA.................................................. 21 0 1 161.00 161 82 43 6 4 3 4 19 0
..................................................AAATTGACTCTAGTAGGGAGTCC.................................................................................... 23 0 1 161.00 161 69 25 3 53 5 6 0 0
..................................................AAATTGACTCTAGTAGGGAGTCG.................................................................................... 23 1 1 149.00 149 99 34 9 1 0 6 0 0
..................................................AAATTGACTCTAGTAGGGAGC...................................................................................... 21 1 1 125.00 125 26 2 5 85 0 0 7 0
.....................................................................................CTCCCTAACGGCGTCAGATTG................................................... 21 1 1 87.00 87 76 10 0 1 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTC..................................................................................... 21 0 1 80.00 80 33 12 0 6 5 24 0 0
......................................................................................TCCCTAACGGAGTCAGATTG................................................... 20 0 1 77.00 77 32 22 0 0 0 22 1 0
..................................................AAATTGACTCTCGTAGGGAGTC..................................................................................... 22 1 1 72.00 72 62 8 0 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGGCGT...................................................................................... 21 1 1 71.00 71 63 6 0 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGGA........................................................................................ 19 0 1 71.00 71 24 10 32 0 1 1 3 0
..................................................AAATTGACTCTAGTAGTGAGTC..................................................................................... 22 1 1 62.00 62 47 14 0 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTC..................................................................................... 22 1 1 61.00 61 55 5 0 0 1 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGCTTG................................................... 21 1 1 59.00 59 55 4 0 0 0 0 0 0
..................................................AGATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 58.00 58 6 2 0 49 1 0 0 0
..................................................AAATTGACTCTAGTCGGGAGT...................................................................................... 21 1 1 57.00 57 47 2 2 1 5 0 0 0
..................................................AAATTGACTCTCGTAGGGAGT...................................................................................... 21 1 1 56.00 56 46 8 1 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTC..................................................................................... 22 1 1 53.00 53 42 5 0 5 0 0 1 0
..................................................AAATTGACTCTAGTCGGGAGTC..................................................................................... 22 1 1 52.00 52 45 4 0 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGT......................................................................................... 18 1 1 51.00 51 33 10 0 0 0 0 8 0
...................................................AATTGACTCTAGTAGGGAGT...................................................................................... 20 0 1 48.00 48 16 7 7 2 2 13 1 0
....................................................ATTGACTCTAGTAGGGAGT...................................................................................... 19 0 1 46.00 46 26 14 1 3 0 1 1 0
..................................................AGATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 42.00 42 9 7 2 22 2 0 0 0
..................................................AAATTGACTCTAGCAGGGAGT...................................................................................... 21 1 1 42.00 42 28 9 4 0 1 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 41.00 41 25 4 0 12 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGGC..................................................................................... 22 1 1 41.00 41 25 7 1 7 1 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTC..................................................................................... 22 1 1 40.00 40 33 6 0 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGGGGT...................................................................................... 21 1 1 40.00 40 31 3 4 1 1 0 0 0
..................................................AAATTGACTCTAGTATGGAGTC..................................................................................... 22 1 1 40.00 40 28 7 0 3 1 1 0 0
..................................................AAATTGACTCTATTAGGGAGTC..................................................................................... 22 1 1 39.00 39 30 7 0 2 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAGT...................................................................................... 21 1 1 38.00 38 28 6 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAGT...................................................................................... 21 1 1 37.00 37 28 6 3 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTT.................................................................................... 23 2 1 37.00 37 22 6 2 4 0 3 0 0
..................................................AAATTGACTCTAGTAGGGAGG...................................................................................... 21 1 1 35.00 35 17 1 3 4 2 0 8 0
..................................................AAATTGACTCTAGCAGGGAGTC..................................................................................... 22 1 1 34.00 34 29 1 0 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTT..................................................................................... 22 1 1 31.00 31 19 7 3 2 0 0 0 0
..................................................AAATTGACTCTATTAGGGAGT...................................................................................... 21 1 1 29.00 29 18 9 2 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGAGTG................................................... 21 1 1 28.00 28 19 9 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCC..................................................................................... 22 1 1 28.00 28 26 0 0 1 1 0 0 0
....................................................ATTGACTCTAGTAGGGAGTC..................................................................................... 20 0 1 28.00 28 11 4 0 11 0 1 1 0
................................CCAGTCCTGGTGAAGCTC........................................................................................................... 18 0 1 27.00 27 0 0 0 2 0 0 25 0
.................................................CAAATTGACTCTAGTAGGGAGT...................................................................................... 22 0 1 27.00 27 10 1 7 6 1 2 0 0
.....................................................................................CTCCCTAACGGAGTCAGATT.................................................... 20 0 1 26.00 26 9 6 0 1 0 6 4 0
.................................................CAAATTGACTCTAGTAGGGAGTC..................................................................................... 23 0 1 26.00 26 3 1 0 19 2 1 0 0
..................................................AAATTGACTCTAGTAAGGAGTC..................................................................................... 22 1 1 24.00 24 14 7 0 0 2 1 0 0
.....................................................................................CTCCCTAACGGAGTCCGATTG................................................... 21 1 1 24.00 24 19 5 0 0 0 0 0 0
..................................................AAATTGACTCTAGTGGGGAGT...................................................................................... 21 1 1 24.00 24 17 1 2 0 3 1 0 0
.....................................................................................CTCCCTAACGGAGCCAGATTG................................................... 21 1 1 23.00 23 20 2 0 1 0 0 0 0
..................................................AAATTGACTCTAGAAGGGAGTC..................................................................................... 22 1 1 23.00 23 21 0 0 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGATTC..................................................................................... 22 1 1 23.00 23 20 3 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGGCAGATTG................................................... 21 1 1 23.00 23 20 3 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTA..................................................................................... 22 1 1 23.00 23 12 4 0 5 1 1 0 0
..................................................AAATTGACTCTAGTAGAGAGTC..................................................................................... 22 1 1 22.00 22 10 10 0 0 2 0 0 0
.....................................................................................CTCCCTCACGGAGTCAGATTG................................................... 21 1 1 21.00 21 18 3 0 0 0 0 0 0
..................................................AAATTGACTCTAGTATGGAGT...................................................................................... 21 1 1 21.00 21 13 7 0 1 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 21.00 21 11 2 0 8 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTC..................................................................................... 22 1 1 20.00 20 17 2 0 0 1 0 0 0
..................................................AAATTGACTCTAGGAGGGAGT...................................................................................... 21 1 1 20.00 20 17 0 1 0 2 0 0 0
..................................................AAATTGACTCTAGTGGGGAGTC..................................................................................... 22 1 1 20.00 20 14 4 0 0 0 2 0 0
..................................................AAATTGACTCTAGTAGGGAGAC..................................................................................... 22 1 1 19.00 19 9 2 0 8 0 0 0 0
..................................................AAATTGACTCTAGGAGGGAGTC..................................................................................... 22 1 1 19.00 19 15 2 1 1 0 0 0 0
..................................................AAATTGACTCTACTAGGGAGTC..................................................................................... 22 1 1 18.00 18 12 0 0 6 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTT................................................... 21 1 1 18.00 18 8 10 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATT...................................................................................... 21 1 1 17.00 17 15 1 1 0 0 0 0 0
......................................................................................TCCCTAACGGAGTCAGATTGAG................................................. 22 0 1 17.00 17 8 4 1 3 0 0 0 1
..................................................ATATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 17.00 17 7 1 0 9 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTCA.................................................................................... 23 2 1 17.00 17 17 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTC..................................................................................... 22 1 1 17.00 17 16 0 0 1 0 0 0 0
..................................................AAACTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 17.00 17 8 1 0 8 0 0 0 0
..................................................AAATTCACTCTAGTAGGGAGTC..................................................................................... 22 1 1 17.00 17 12 2 0 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGA...................................................................................... 21 1 1 16.00 16 7 6 0 0 2 0 1 0
..................................................AAATTGACTCTAGTAGGCAGTC..................................................................................... 22 1 1 16.00 16 14 0 2 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGACAGATTG................................................... 21 1 1 16.00 16 15 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGT...................................................................................... 21 1 1 16.00 16 15 1 0 0 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTC..................................................................................... 22 1 1 15.00 15 10 2 1 2 0 0 0 0
..............................AACCAGTCCTGGTGAAGCTC........................................................................................................... 20 0 1 15.00 15 1 1 0 7 0 0 6 0
..................................................AAATTGACCCTAGTAGGGAGTC..................................................................................... 22 1 1 15.00 15 10 3 1 1 0 0 0 0
..................................................AAATTGACTCTAGTACGGAGTC..................................................................................... 22 1 1 15.00 15 11 2 1 1 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTCA.................................................................................... 23 2 1 15.00 15 10 4 1 0 0 0 0 0
................................................TCAAATTGACTCTAGTAGGGAGT...................................................................................... 23 0 1 15.00 15 7 1 5 2 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGGTTG................................................... 21 1 1 14.00 14 8 6 0 0 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTC..................................................................................... 22 1 1 14.00 14 7 2 1 4 0 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGT...................................................................................... 21 1 1 14.00 14 11 2 0 1 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTCT.................................................................................... 23 2 1 14.00 14 12 1 1 0 0 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTC..................................................................................... 22 1 1 13.00 13 3 2 0 8 0 0 0 0
..................................................AAACTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 13.00 13 5 2 2 3 1 0 0 0
.....................................................................................ATCCCTAACGGAGTCAGATTG................................................... 21 1 1 13.00 13 11 2 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTG..................................................................................... 22 1 1 13.00 13 3 8 0 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGAAGT...................................................................................... 21 1 1 13.00 13 7 3 0 2 1 0 0 0
..................................................AAATTGACTCTAGCAGGGAGTCA.................................................................................... 23 2 1 12.00 12 11 1 0 0 0 0 0 0
.....................................................................................CTCCATAACGGAGTCAGATTG................................................... 21 1 1 12.00 12 11 1 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGC.................................................. 22 1 1 12.00 12 12 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGCGTCAGCTTG................................................... 21 2 1 12.00 12 10 2 0 0 0 0 0 0
..................................................AAATTGACTCTAGAAGGGAGT...................................................................................... 21 1 1 12.00 12 9 1 1 1 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGT...................................................................................... 21 1 1 12.00 12 10 0 0 1 1 0 0 0
.....................................................................................CTCCCTAACGTAGTCAGATTG................................................... 21 1 1 12.00 12 9 1 0 0 0 0 2 0
.....................................................................................CGCCCTAACGGAGTCAGATTG................................................... 21 1 1 12.00 12 9 2 0 1 0 0 0 0
..................................................AAATTGACTCTAGTACGGAGT...................................................................................... 21 1 1 11.00 11 6 4 0 1 0 0 0 0
..................................................AAATTGACTCTAGTAAGGAGT...................................................................................... 21 1 1 11.00 11 6 4 0 0 1 0 0 0
..................................................AAATTGACCCTAGTAGGGAGT...................................................................................... 21 1 1 11.00 11 5 2 1 2 1 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCC.................................................................................... 22 0 1 11.00 11 9 1 0 1 0 0 0 0
.....................................................................................CTCCCTAATGGAGTCAGATTG................................................... 21 1 1 11.00 11 1 3 0 0 0 7 0 0
...................................................AATTGACTCTAGTAGGGAGTCA.................................................................................... 22 1 1 11.00 11 2 1 0 0 0 8 0 0
.....................................................................................CTCCCTAACGGATTCAGATTG................................................... 21 1 1 11.00 11 7 3 0 0 0 0 1 0
..................................................AAATTGACTCGAGTAGGGAGT...................................................................................... 21 1 1 11.00 11 9 1 0 0 1 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTCA.................................................................................... 23 2 1 11.00 11 9 2 0 0 0 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 11.00 11 7 3 1 0 0 0 0 0
..................................................AAATTGTCTCTAGTAGGGAGTC..................................................................................... 22 1 1 10.00 10 10 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTCGGGAGTCA.................................................................................... 23 2 1 10.00 10 9 1 0 0 0 0 0 0
.....................................................................................CTACCTAACGGAGTCAGATTG................................................... 21 1 1 10.00 10 8 2 0 0 0 0 0 0
.....................................................................................TTCCCTAACGGAGTCAGATTG................................................... 21 1 1 10.00 10 8 2 0 0 0 0 0 0
..................................................AAATTGACTCTAGTTGGGAGT...................................................................................... 21 1 1 10.00 10 9 0 0 0 1 0 0 0
..................................................AAATTGACTCTAGTAGAGAGT...................................................................................... 21 1 1 10.00 10 6 4 0 0 0 0 0 0
.....................................................................................CTCCCTAACAGAGTCAGATTG................................................... 21 1 1 10.00 10 3 7 0 0 0 0 0 0
..................................................AAATTGTCTCTAGTAGGGAGT...................................................................................... 21 1 1 10.00 10 10 0 0 0 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGT...................................................................................... 21 1 1 10.00 10 3 3 4 0 0 0 0 0
..................................................GAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 10.00 10 5 3 0 1 0 1 0 0
..................................................AAAATGACTCTAGTAGGGAGT...................................................................................... 21 1 1 9.00 9 3 0 0 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGAAGTC..................................................................................... 22 1 1 9.00 9 5 2 0 2 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGT...................................................................................... 21 1 1 9.00 9 4 2 0 3 0 0 0 0
..................................................AAATTGACTCTACTAGGGAGT...................................................................................... 21 1 1 9.00 9 4 0 4 1 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGACTG................................................... 21 1 1 9.00 9 7 2 0 0 0 0 0 0
..................................................TAATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 9.00 9 6 0 0 3 0 0 0 0
..................................................AAATTGACTCTAGTAGTG......................................................................................... 18 1 1 9.00 9 9 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATCG................................................... 21 1 1 9.00 9 6 3 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGCGTCAGATTGA.................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0 0
....................................................................................ACTCCCTAACGGAGTCAGATTGA.................................................. 23 0 1 9.00 9 3 1 0 2 3 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGT.................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCATATTG................................................... 21 1 1 9.00 9 5 4 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTCT.................................................................................... 23 2 1 9.00 9 7 2 0 0 0 0 0 0
..................................................AAATGGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 9.00 9 9 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGCAGT...................................................................................... 21 1 1 9.00 9 9 0 0 0 0 0 0 0
..................................................AAATTCACTCTAGTAGGGAGT...................................................................................... 21 1 1 9.00 9 6 1 1 1 0 0 0 0
..................................................ATATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 9.00 9 2 0 0 6 1 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 8.00 8 2 2 0 4 0 0 0 0
..................................................AAATTAACTCTAGTAGGGAGTC..................................................................................... 22 1 1 8.00 8 5 2 0 0 1 0 0 0
.....................................................................................CTCCCTACCGGAGTCAGATTG................................................... 21 1 1 8.00 8 8 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGGGTCAGATTG................................................... 21 1 1 8.00 8 7 1 0 0 0 0 0 0
..................................................GAATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 8.00 8 3 2 1 0 2 0 0 0
..................................................AGATTGACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 8.00 8 2 0 0 6 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGCTTGA.................................................. 22 1 1 8.00 8 6 2 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGTTTG................................................... 21 1 1 8.00 8 6 2 0 0 0 0 0 0
..................................................AAATGGACTCTAGTAGGGAGT...................................................................................... 21 1 1 8.00 8 7 0 0 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTA.................................................................................... 23 2 1 8.00 8 5 3 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTCT.................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAGTC..................................................................................... 22 1 1 7.00 7 5 2 0 0 0 0 0 0
..................................................AAATTGACGCTAGTAGGGAGT...................................................................................... 21 1 1 7.00 7 3 0 0 0 0 4 0 0
..................................................AAATTGACTCTAGTAGGGAGGCA.................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTCA.................................................................................... 23 2 1 7.00 7 6 1 0 0 0 0 0 0
..................................................AAATTGACTCTATTAGTGAGTC..................................................................................... 22 2 1 7.00 7 5 2 0 0 0 0 0 0
.....................................................................................CTCCCGAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0 0
..................................................AAATTGACGCTAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 4 0 0 0 0 3 0 0
..................................................ACATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAATC..................................................................................... 22 1 1 7.00 7 2 4 1 0 0 0 0 0
..................................................ACATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 7.00 7 6 0 1 0 0 0 0 0
..................................................AAATTGACTCGAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
.....................................................................................CTCCCTGACGGAGTCAGATTG................................................... 21 1 1 7.00 7 2 5 0 0 0 0 0 0
..................................................AAATTGACTCCAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 5 0 0 1 1 0 0 0
..................................................AAATTGACTCTAGTTGGGAGTC..................................................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTATGGAGTCA.................................................................................... 23 2 1 6.00 6 5 1 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGAA................................................. 23 1 1 6.00 6 2 1 0 1 1 1 0 0
..................................................AAATTGACTCTATTAGGGAGTCA.................................................................................... 23 2 1 6.00 6 5 1 0 0 0 0 0 0
..................................................AACTTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 4 0 1 1 0 0 0 0
..................................................AAATTGACTCTCGTAGGGCGT...................................................................................... 21 2 1 6.00 6 6 0 0 0 0 0 0 0
.....................................................................................CTCCCTAAGGGAGTCAGATTG................................................... 21 1 1 6.00 6 0 0 0 0 0 6 0 0
.....................................................................................CTCCCTAAAGGAGTCAGATTG................................................... 21 1 1 6.00 6 3 2 0 0 0 1 0 0
..................................................AAATTGACTCTAGCAGGGAGTCT.................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0
..................................................AGATTGACTCTAGTAGGGAGC...................................................................................... 21 2 1 6.00 6 0 0 0 6 0 0 0 0
..................................................AAATTGACTCTAGAAGGGAGTCA.................................................................................... 23 2 1 6.00 6 5 0 1 0 0 0 0 0
..................................................AAATTGATTCTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 4 1 0 0 1 0 0 0
..................................................AAATTGACTCTAGTCGGGAGTCT.................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0
..................................................AAATTGACTCTATTAGTGAGT...................................................................................... 21 2 1 6.00 6 6 0 0 0 0 0 0 0
.....................................................................................CCCCCTAACGGAGTCAGATTG................................................... 21 1 1 6.00 6 2 3 0 0 0 1 0 0
..................................................AAAATGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 0 0 0 6 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCACATTG................................................... 21 1 1 6.00 6 6 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCG....................................................................................... 20 1 1 6.00 6 3 2 0 0 0 0 1 0
..................................................AAATTGACTCTTGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 5 1 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGACTCAGATTG................................................... 21 1 1 6.00 6 3 2 0 0 0 0 1 0
..................................................AAATTGACTCTAGTAGGGACTC..................................................................................... 22 1 1 6.00 6 5 0 0 1 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGAT..................................................... 19 0 1 6.00 6 0 0 0 1 0 0 5 0
..................................................AAATCGACTCTAGTAGGGAGT...................................................................................... 21 1 1 6.00 6 3 0 2 0 1 0 0 0
..................................................AAATCGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 4 1 0 0 0 1 0 0
..................................................AAATTGACTTTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 3 0 0 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTCA.................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0
..................................................AAATTGACTCTAATAGGGAGT...................................................................................... 21 1 1 5.00 5 2 1 1 0 1 0 0 0
...................................................AATTGACTCTAGTAGGGAG....................................................................................... 19 0 1 5.00 5 2 1 0 0 0 1 1 0
.....................................................................................CTCCCTAACGGTGTCAGATTG................................................... 21 1 1 5.00 5 3 2 0 0 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGTCA.................................................................................... 23 2 1 5.00 5 1 4 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGG.......................................................................................... 17 0 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTT................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGACAGATTGA.................................................. 22 1 1 5.00 5 4 1 0 0 0 0 0 0
..................................................AAATTGTCTCTGGTAGGGAGTC..................................................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATTGACTCTCGTAGGGGGT...................................................................................... 21 2 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTG.................................................................................... 23 2 1 5.00 5 2 1 1 0 0 0 1 0
...................................................AATTGACTCTAGTAGGGAGTCT.................................................................................... 22 1 1 5.00 5 0 0 1 3 0 1 0 0
.....................................................................................CTCCCTAACTGAGTCAGATTG................................................... 21 1 1 5.00 5 4 0 0 0 0 0 1 0
..................................................AAATTGACTATAGTAGGGAGTC..................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGT...................................................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTC................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTCA.................................................................................... 23 2 1 5.00 5 3 1 1 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGGCAGATTGA.................................................. 22 1 1 5.00 5 4 1 0 0 0 0 0 0
....................................................................................ACTCCCTAACGGAGTCAGATTG................................................... 22 0 1 5.00 5 1 0 0 0 0 4 0 0
..................................................AAATTGACACTAGTAGGGAGTC..................................................................................... 22 1 1 5.00 5 2 0 0 0 0 3 0 0
..................................................AAATTGACTCTAGTAGGGC........................................................................................ 19 1 1 5.00 5 2 1 0 0 0 0 2 0
..................................................AAATTGACGCTAGTAGGGAGTCA.................................................................................... 23 2 1 5.00 5 0 0 0 0 0 5 0 0
..................................................AAATTGACTATAGTAGGGAGT...................................................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGTTAGT...................................................................................... 21 2 1 5.00 5 4 1 0 0 0 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGTC..................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0
.....................................................................................CTCTCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 2 3 0 0 0 0 0 0
..................................................AAATTGACTCGAGTAGGGGGT...................................................................................... 21 2 1 5.00 5 5 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATGG................................................... 21 1 1 5.00 5 4 0 0 0 0 0 1 0
..................................................AAATTGATTCTAGTAGGGAGT...................................................................................... 21 1 1 5.00 5 3 0 2 0 0 0 0 0
..................................................AAATTGACTCTAGGAGGGAGCC..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCCAGTAGGGAGT...................................................................................... 21 1 1 4.00 4 2 1 1 0 0 0 0 0
.....................................................................................CTCCATAACGGAGTCAGAGTG................................................... 21 2 1 4.00 4 2 2 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTAT.................................................................................... 23 2 1 4.00 4 3 0 1 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGAT................................................. 23 1 1 4.00 4 1 3 0 0 0 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTCGGAGGGAGTC..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCA.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
.....................................................................................CTCCCCAACGGAGTCAGATTG................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTCA.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGGGG...................................................................................... 21 2 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTATTACTGAGTC..................................................................................... 22 3 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGTATT...................................................................................... 21 2 1 4.00 4 3 0 0 0 1 0 0 0
..................................................AAATTGACTCTAGTATGGATTC..................................................................................... 22 2 1 4.00 4 2 2 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTCT.................................................................................... 23 2 1 4.00 4 3 0 0 1 0 0 0 0
..................................................AAATTGACTCTCGTATGGAGT...................................................................................... 21 2 1 4.00 4 2 1 0 0 1 0 0 0
..................................................AAATTGACTCTAGTAGTTAGTC..................................................................................... 22 2 1 4.00 4 1 1 1 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGG........................................................................................ 19 1 1 4.00 4 3 0 0 0 0 0 1 0
.....................................................................................CTCCCTAGCGGAGTCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................ACATTGACTCTAGTCGGGAGTCA.................................................................................... 23 3 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAGT...................................................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0
..................................................AAACTGACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 4.00 4 1 0 0 3 0 0 0 0
.....................................................................................CTCCCTAACGGCGGCAGATTG................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCT..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGCGTC..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
........................................................................................CCTAACGGAGTCAGATTG................................................... 18 0 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTTTAGTAGGGAGT...................................................................................... 21 1 1 4.00 4 3 1 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGCGTCCGATTG................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTGT.................................................................................... 23 2 1 4.00 4 3 0 0 0 0 1 0 0
..................................................AAATTTACTCTAGTAGGGAGT...................................................................................... 21 1 1 4.00 4 1 0 2 1 0 0 0 0
.....................................................................................CTCCCTAACGGAGTAAGATTGA.................................................. 22 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCCA.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACCGAGTCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGGGTC..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.........................................................................................CTAACGGAGTCAGATTGA.................................................. 18 0 1 4.00 4 1 1 0 0 0 0 2 0
..................................................AAATTGACTCTAGTAGGGAGGCT.................................................................................... 23 2 1 4.00 4 3 1 0 0 0 0 0 0
...............................ACCAGTCCTGGTGAAGCTC........................................................................................................... 19 0 1 4.00 4 0 0 0 3 0 0 1 0
.....................................................................................ATCCCTAACGGAGTCAGAGTG................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTTT...................................................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTCT.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGC...................................................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAAGGAGTCA.................................................................................... 23 2 1 4.00 4 1 3 0 0 0 0 0 0
..................................................AAATTGACTCTAATAGGGAGTC..................................................................................... 22 1 1 4.00 4 1 2 0 1 0 0 0 0
..................................................AAATTGACTCTAGTAGAG......................................................................................... 18 1 1 4.00 4 1 1 0 0 0 0 2 0
..................................................AAATTAACTCTAGTAGGGAGT...................................................................................... 21 1 1 4.00 4 1 1 0 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGGACT...................................................................................... 21 1 1 4.00 4 2 0 1 1 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAAATTG................................................... 21 1 1 4.00 4 3 1 0 0 0 0 0 0
.....................................................................................CTCACTAACGGAGTCAGATTG................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGCCTCTAGTAGGG......................................................................................... 18 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTCGGGCGTC..................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATTCA.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTCA.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGCAGTCAGATTG................................................... 21 1 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGAAG....................................................................................... 20 1 1 4.00 4 2 2 0 0 0 0 0 0
.....................................................................................CTCCCTATCGGAGTCAGATTG................................................... 21 1 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAG....................................................................................... 20 1 1 4.00 4 3 1 0 0 0 0 0 0
..................................................AAATTGACTCTCGTCGGGAGT...................................................................................... 21 2 2 3.50 7 7 0 0 0 0 0 0 0
......................................................................................TCCCTAACGGAGTCAGATTGAGT................................................ 23 1 1 3.00 3 2 0 0 0 0 0 1 0
..................................................AAATTGACTCTATTAGGGAGTCT.................................................................................... 23 2 1 3.00 3 2 1 0 0 0 0 0 0
..................................................AAATTGACTCTAGTATGG......................................................................................... 18 1 1 3.00 3 1 2 0 0 0 0 0 0
.....................................................................................CTCCCTAACGCAGTCAGATTGA.................................................. 22 1 1 3.00 3 1 0 0 0 0 0 2 0
..................................................AAATTGACTCTGGTAGGGAGG...................................................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0
.....................................................................................CACCCTAACGGAGTCAGATTG................................................... 21 1 1 3.00 3 2 0 0 0 0 1 0 0
..................................................AAATTGACTCTCGTAGGGAGTCG.................................................................................... 23 2 1 3.00 3 2 1 0 0 0 0 0 0
....................................................ATTGACTCTAGTAGGGAG....................................................................................... 18 0 1 3.00 3 1 0 0 1 0 0 1 0
..................................................AAAGTGACTCTAGCAGGGAGTC..................................................................................... 22 2 1 3.00 3 0 3 0 0 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGGC..................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................CAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0
..................................................AAATTGACTCTATTAGGG......................................................................................... 18 1 1 3.00 3 1 1 0 0 0 0 1 0
.....................................................................................CTCCCTAACGGAGTCAGCTGG................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTCC.................................................................................... 23 1 1 3.00 3 2 0 0 1 0 0 0 0
..................................................AAATTGACGCTCGTAGGGAGTC..................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................AAATTGACTCTAGTCGGGCGT...................................................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0
.....................................................................................CTCCCTAACGGCGTCAGAGTG................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0
.....................................................................................CTCCCTCACGGCGTCAGATTG................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGC...................................................................................... 21 2 1 3.00 3 0 0 0 3 0 0 0 0
.....................................................................................CTCCCTAACGGACTCAGATTGA.................................................. 22 1 1 3.00 3 1 0 0 0 0 0 2 0
..................................................AAATTGACTCTAGTAGGTT........................................................................................ 19 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................AAATTCACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 3.00 3 1 0 0 2 0 0 0 0
..................................................AAATTGACTCTATTAGGGATTC..................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0

Anti-sense strand reads

GCGATATGTAATGCACGGAACTTTACCGTTTTGGTCAGGACCACTTCGAGTTTAACTGAGATCATCCCTCAGGAAATTACTTGCTGAGGGATTGCCTCAGTCTAACTCGATGTTTCCTCGCTCTGTTGTGTCCTGGTGATTTTTTTTTACACAATCG

************************************.((((..((.(((((((.((((((((..(((((((((.(((...))).)))))))))..)))))))).))))))).)).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043

female body

 M056

embryo

 V046

embryo

 V052

head

 V058

head
...................................................................................CTGAGGGATTGCCTCAGTCTAA.................................................... 22 0 1 3.00 3 2 0 1 0 0
....................................................................................TGAGGGATTGCCTCAGTCTAA.................................................... 21 0 1 2.00 2 1 0 1 0 0
................................................AGTTTAACTGAGATCATCCCTC....................................................................................... 22 0 1 2.00 2 2 0 0 0 0
....................................................................................TGAGGGATTGCCGCAGTCTAA.................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................................................ACTGAGGGATTGCCTCAGTCTA..................................................... 22 1 1 1.00 1 1 0 0 0 0
....................................................................................TGAGGGATTGCCTCAGTCTGA.................................................... 21 1 1 1.00 1 0 1 0 0 0
..............................TTGGTCAGAACCACTTCG............................................................................................................. 18 1 1 1.00 1 0 1 0 0 0
..................................................................................GCTGAGGGATTATCTCAGTCAAA.................................................... 23 3 2 0.50 1 0 0 0 1 0
.........................................................................................................................TCTGTTGTGTTCTAGGGAT................. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3R:481070-481226 + dya_11 confident CGCTATACAT-----TA---------------------CGTGCCTTG-A-------------------AATGG--CA-----------------------------AAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA---------CTAAAAAAAAATGTGTTAGC
droEre2 scaffold_4770:471012-471165 + der_6 confident AGCCATACAT-----TA---------------------CGCGCCTTG-A-------------------AGTGG--CG-----------------------------GAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA---------CTTAAA---AAGGTGTTAGC
droSec2 scaffold_6:240396-240553 + dse_4 confident TGACATATATGTG-ATA---------------------CGTGCCCTG-A-------------------CATGG--CG-----------------------------CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---------CTTAAA---AAGGTGTTAGC
droSim2 3r:105550-105707 + dsi-mir-929 Known_mirbase TGACATATATGTG-ATA---------------------CGTGCCCTG-G-------------------CATGG--CG-----------------------------CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---------CTTAAA---AAGGTGTTAGC
dm3 chr3R:121053-121210 + dme-mir-929 Known_mirbase ATCCATGTATGCA-ATC---------------------CATGCCCTG-A-------------------CATGG--CG-----------------------------GAACC-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA---------CTTAAA---AATGTGTTAGC
droEug1 scf7180000409759:55707-55869 + TGATCTATAAA---ATA-----------AGTCCT-----GT-ATCTG-A-------------------TATAGATGA-----------------------------TAACA-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--------TTCTTA---AAAGTGTTATC
droBia1 scf7180000302098:364492-364651 - TACCCAAG-TTC---------------------CTAT-TGTCCTTTG-A-------------------CATAA--CA-----------------------------GAACTAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--------CTGCCA---AAAGTGTTAGC
droTak1 scf7180000414441:35416-35576 - TGCCTTACATACC---------------------TAT-TGTTCCCTG-A-------------------CATAA--GA-----------------------------GAACCAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--------CTTTAA---AAAGTGTTAGC
droEle1 scf7180000491104:1857418-1857571 + GGGTACTCCG-----AA---------------------AGAACCGTG-G-------------------AGC----GA-----------------------------GAAGGACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGGG-GAGCAG--------CTGCCG---AAAGTGTTAGC
droRho1 scf7180000777910:14042-14185 - AGTCTTACAT-----TA---------------------CGC----------------------------------GA-----------------------------AAACGACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAAG-GAGCAG--------CTGCCA---AAAGTGTTAGC
droFic1 scf7180000454096:1242530-1242670 + ACG-------------------------------------CG--CCG-A-------------------CTTTG---A-----------------------------GAACGACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--------CTGCC-----AAGTGCTAGC
droKik1 scf7180000302634:767720-767869 + CCCA-AATC------------------------------------GA-GAGTG--ACCCGAGCAACGCCAT-----------------------------------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG--A--------TTCCAG---AGAGTGTTAGG
droAna3 scaffold_13340:11127672-11127857 + dan_5 confident TGTCCTGAA-------A---------------------AGTGTTCTG-A-------------------GATGC--AGCTTCCCCAGCCACCAACCAACCAACCAACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTG------GCCTAA---AAAGTGTTAGC
droBip1 scf7180000396691:36357-36539 + AGTGAGAAAA------------------TGTCCTGAAAAGGGTACTG-A-------------------GATGC--GGCCTTCC-------------ACCAACCCACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTT------GCCCAA---AAAGTGTTAGC
dp5 2:24810807-24810963 - dps-mir-929 Known_mirbase GTGCATGCGCCCG-AT----------------------------CCG-AAGTG----------------------CA-----------------------------CGG-CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGA----CAAAGAACCGAAGTG-TAGT
droPer2 scaffold_6:111426-111562 - dpe_8 confident CGCCCGATC------------------------------------CG-AAGTG---CA-----------------CG-----------------------------G---GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAA------------------AAGACAAAGA
droWil2 scf2_1100000004902:9825548-9825697 - dwi_10 confident AGCATAATC------------------------------------TA-AAGTG--GCTT----------------GA-----------------------------GA---ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA--------CGACCCACCAAAGTGTTAGA
droVir3 scaffold_12822:1418793-1418926 + dvi-mir-929 Known_mirbase CCAGGCC-----------------------------------------AAGTGCGACGC----------------G------------------------------T---GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAG-----------------TAAA---AATGTGCCAAG
droMoj3 scaffold_6540:34020249-34020418 + dmo_3169 AGATATATATATATATACATACATACAT--------A-TA-----C------GCT--------------------AC-----------------------------G---AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAGCACAAATGCAA---ATAATGGTATA
droGri2 scaffold_15074:2468156-2468313 - dgr_3 confident CAATGTCC-------------------------TCAA-TGTTATTTGAAAGTGTGC---------------CC--CC-----------------------------GA---ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA---------GTGATA---CAAGTGTTACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CGCTATACAT-----TA---------------------CGTGCCTTG-A-------------------AATGG--CA-----------------------------AAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA---------CTAAAAAAAAATGTGTTAGCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................2219518.009518272171193264164957124560000
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................2118797.0087971031275635291325426718830000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2114517.004517271803111536275280000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2311529.0015292571093601049420000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................231858.0085842610010140543350000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221639.0063911614619540420010
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181389.00389804209021300000
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201375.00375491121270192300000
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................191183.0018391005011490000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................211161.0016119443438260000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231161.0016106535256930000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231149.001490610349990000
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211125.001257085022650000
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................21180.008002465123300000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20177.007712200223200000
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................19171.007131011024320000
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................18151.00518000103300000
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................20148.00481132271670000
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19146.00461130142610000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23137.0037034062220000
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21135.0035804211730000
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22131.0031002071930000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20128.00281111041100000
.............................................................................................................CC-AGTCCTGGTGAAGCTC......................................................................................................................18127.0027250200000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22127.0027026111070000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20126.002646106900000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23126.0026011921300000
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22123.0023015141200000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................21118.0018000010800000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................22117.001700304810010
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21116.001610026700000
...........................................................................................................AACC-AGTCCTGGTGAAGCTC......................................................................................................................20115.001560701100000
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................23115.001500201750000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................22113.001300028300000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................22112.0012000001200000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................22111.001100101900000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................22111.001108001200000
...................................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA............................................................2319.00900231300000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2219.00900000900000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................2318.00800003500000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................2316.00601111200000
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................1916.00650100000000
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................1915.00511001200000
................................................................................................................................AAATTGACTCTAGTAGG.....................................................................................................1715.00500000500000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................2315.00510001210000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2215.00501300010000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTC.............................................................2115.00500000500000
...................................................................................................................................................................ACTCCCTAACGGAGTCAGATTG.............................................................2215.00504000100000
................................................................................................................................AAATTGACTCTAGTAGGGC...................................................................................................1915.00520001200000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................2314.00400000310000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2314.00400003100000
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................1914.00410000300000
................................................................................................................................AAATTGACTCTAGTAGGGAGCT................................................................................................2214.00400000400000
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................1814.00400001300000
................................................................................................................................AAATTGACTCTAGTAGGGAGTGT...............................................................................................2314.00401000300000
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................1814.00420001100000
............................................................................................................ACC-AGTCCTGGTGAAGCTC......................................................................................................................1914.00410300000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT..........................................................2313.00310000200000
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1813.00310100100000
................................................................................................................................AAATTGACTCTAGTAGGTT...................................................................................................1913.00300000300000
droEre2
AGCCATACAT-----TA---------------------CGCGCCTTG-A-------------------AGTGG--CG-----------------------------GAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA---------CTTAAA---AAGGTGTTAGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21155442.00554421928431354237051445570
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22117077.001707724820626932331964117330
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2116750.00675018411427714349880
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2312769.0027694724851922419920
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................2011565.001565313234115911370
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................2211530.0015301931343611580
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311528.0015285116264202179600
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................1911427.001427004503413480
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181814.008144036067680
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201522.00522101171804130
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231361.00361160640652160
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................191233.002332000182130
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211231.00231233480131440
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................211135.00135414033840
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231130.001304320212890
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211122.001221129110890
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191116.001163013520750
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20190.00902101811490
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22182.008201603720
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22170.0070001228480
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22165.006520604530
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................18254.00108001011060
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................23149.004900216400
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21136.003641921190
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23135.0035302012180
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21127.002710211220
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................21125.002510400200
................................................................................................................................AAATTGACTCTAGTAGGAGT..................................................................................................20224.004810305390
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20123.002320000210
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................19121.002100300180
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19121.002120204130
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................22120.00201092080
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................18120.002000000200
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................23118.00182090070
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................23115.001500104100
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................23115.00150040290
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................22115.001500150000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20115.001521100110
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................23114.001400001130
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................18113.001300000130
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23112.00122400150
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................20112.00121010190
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................22110.00105000050
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2319.0090050040
................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA..............................................................................................2418.0085000030
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................1818.0080010070
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1818.0081010150
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2217.0072000230
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2217.0070030040
................................................................................................................................AAATTGACTCTAGTAGGGAGTCAC..............................................................................................2416.0060010230
.................................................................................................................................AATTGACTCTAGTAGGGT...................................................................................................1816.0061000050
................................................................................................................................AAATTGACTCTAGTAGGGC...................................................................................................1916.0060000060
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA..............................................................................................2415.0050000050
................................................................................................................................AAATTGACTCTAGTAGGGAGTCGA..............................................................................................2415.0050020030
......................................................................................................................................................................CCCTAACGGAGTCAGATTGA............................................................2015.0050120020
................................................................................................................................AAATTGACTCTAGTAGGGTT..................................................................................................2015.0050010040
................................................................................................................................AAATTGACTCTAGTAGGGTA..................................................................................................2015.0050000050
......................................................................................................................................................................CCCTAACGGAGTCAGATTG.............................................................1915.0051000040
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................1915.0050000050
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................2114.0040200110
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................1914.0040110020
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA..........................................................2314.0040000040
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................2314.0040000130
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG...........................................................2314.0040030010
droSec2
TGACATATATGTG-ATA---------------------CGTGCCCTG-A-------------------CATGG--CG-----------------------------CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---------CTTAAA---AAGGTGTTAGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................211112939.0011293914612438375596600
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22113992.0013992112119042428448
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................1917088.00708814177039
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2115632.005632145401205327
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................2015145.00514514469774585
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311437.00143725151447814
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2311319.001319101101431056
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201776.00776209813645
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................181478.00478001477
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211442.00442218132281
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................221314.0031442717266
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181281.00281206273
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................191274.002742521246
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191210.002108305167
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231186.0018642157104
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211180.001800206154
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221145.001452226358
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21198.009851488
................................................................................................................................AAATTGACTCTAGTAGGGC...................................................................................................19188.008800088
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20187.008763276
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21181.008116074
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................23177.0077710951
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22176.0076417253
................................................................................................................................AAATTGACTCTAGTAGGGGT..................................................................................................20160.006000060
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23155.0055110341
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................23149.004904936
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................22145.0045121329
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21137.003735128
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20125.002560019
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22121.002111217
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................18119.001900217
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19117.001741012
................................................................................................................................AAATTGACTCTAGTAGGGTT..................................................................................................20117.001700017
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20116.001630103
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23116.001620410
.................................................................................................................................AATTGACTCTAGTAGGGT...................................................................................................18115.001500015
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................19114.001400014
................................................................................................................................AAATTGACTCTAGTAGGAGT..................................................................................................201012.201220123107
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................22112.00120165
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................23112.00121227
.................................................................................................................................AATTGACTCTAGTAGGGAGA.................................................................................................20111.001101010
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................20111.001101010
................................................................................................................................AAATTGACTCTAGTAGGTT...................................................................................................1929.001800018
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2019.0090108
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................2318.0080017
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2218.0080107
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA..............................................................................................2418.0080008
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................1817.0072005
.................................................................................................................................AATTGACTCTAGTAGGGAGC.................................................................................................2017.0070106
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................2217.0071204
................................................................................................................................AAATTGACTCTAGTAGGGTA..................................................................................................2017.0070007
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................2217.0070025
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTA.............................................................2116.0060006
...............................................................................................................................CAAATTGACTCTAGTAGGGT...................................................................................................2016.0060006
................................................................................................................................AAATTGACTCTAGTAGGAT...................................................................................................1915.0050005
...............................................................................................................................CAAATTGACTCTAGTAGGGAG..................................................................................................2115.0050104
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG...........................................................2315.0050023
................................................................................................................................AAATTGACTCTAGTAGGA....................................................................................................1815.0050005
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................1814.0040004
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2314.0040004
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................1914.0040013
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT..........................................................2313.0030012
...............................................................................................................................CAAATTGACTCTAGTAGGGA...................................................................................................2013.0031101
................................................................................................................................AAATTGACTCTAGTAGGGAGAT................................................................................................2213.0031002
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................2113.0030003
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................2213.0030012
droSim2
TGACATATATGTG-ATA---------------------CGTGCCCTG-G-------------------CATGG--CG-----------------------------CAACC-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA---------CTTAAA---AAGGTGTTAGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................2111764.001764699351951013113210883200000
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201791.00791651305658710102102000
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................221744.007442025175001201346938100000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................211369.0036915402274168000001300001
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181224.0022419326012010100000000
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................19192.00923820233921121100000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................23173.00735006000023273000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20162.00623710122100000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21161.0061505210000000300000
.............................................................................................................CC-AGTCCTGGTGAAGCTC......................................................................................................................18153.0053462500000000000000
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................18142.0042420000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................20141.0041401000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................19138.0038271002800000000000
................................................................................................................................AAATTGACTCTAGTAGGGAC..................................................................................................20134.0034340000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................21134.0034322000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21133.0033230100401200101000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................22130.003090122900120400000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................23129.0029001500202210700000
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19125.0025240010000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGA................................................................18124.0024000002400000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................20123.0023151030200000200000
................................................................................................................................AAATTGACTCTAGTAGGGC...................................................................................................19119.0019181000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19117.0017131000300000000000
...........................................................................................................AACC-AGTCCTGGTGAAGCTC......................................................................................................................20116.0016160000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................21111.001130020000004200000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20111.0011110000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGG....................................................................................................19110.001081000100000000000
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................18110.001090000000000100000
................................................................................................................................AAATTGACTCTAGTAGGC....................................................................................................1819.00990000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................1919.00990000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................2219.00922010100010200000
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................2119.00990000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT..........................................................2317.00730310000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................2317.00700010100004100000
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2016.00660000000000000000
..........................................................................................................CAACC-AGTCCTGGTGAAGCTC......................................................................................................................2116.00650000100000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAG..................................................................................................2115.00530000200000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGA...................................................................................................2015.00500000500000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................2214.00400020000200000000
...............................................................................................................................CAAATTGACTCTAGTAGG.....................................................................................................1814.00430000000100000000
................................................................................................................................AAATTGACTCTAGTAGGGTTG.................................................................................................2114.00440000000000000000
................................................................................................................................AAATTGACTCTAGTAGGA....................................................................................................1814.00440000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................2014.00410000300000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................2313.00320000000100000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................2313.00300020000001000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA...........................................................2213.00310000000020000000
................................................................................................................................AAATTGACTCTAGTAGGGCT..................................................................................................2013.00330000000000000000
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................1913.00321000000000000000
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................1913.00330000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1813.00330000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................2313.00320000000001000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGC..........................................................2312.00210000100000000000
....................................................................................................................................TGACTCTAGTAGGGAGTC................................................................................................1812.00210000000001000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATT..............................................................1912.00210000100000000000
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................1912.00220000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGATA.................................................................................................2112.00220000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2212.00200000000101000000
......................................................................................................................................................................CCCTAACGGAGTCAGATTGA............................................................2012.00220000000000000000
............................................................................................................ACC-AGTCCTGGTGAAGCTC......................................................................................................................1912.00220000000000000000
................................................................................................................................AAATTGACTCTAGTAGGAT...................................................................................................1922.00440000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA..........................................................2312.00200200000000000000
.................................................................................................................................AATTGACTCTAGTAGGGA...................................................................................................1812.00210000100000000000
........................................................................................................................................................................CTAACGGAGTCAGATTGAA...........................................................1912.00220000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGAT...............................................................1812.00210000100000000000
.................................................................................................................................AATTGACTCTAGTAGGGT...................................................................................................1811.00110000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAT..................................................................................................1911.00110000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGG.................................................................................................1911.00110000000000000000
......................................................................................................................................................................CCCTAACGGAGTCAGATTG.............................................................1911.00100000100000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGA..........................................................2311.00101000000000000000
......................................................................................................................................................................CCCTAACGGAGTCAGATTGG............................................................2011.00110000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGG.................................................................................................2011.00110000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2211.00100000000000100000
...............................................................................................................................CAAATTGACTCTAGTAGGGAT..................................................................................................2111.00110000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGAC...............................................................1911.00110000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAAA.................................................................................................2111.00110000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGC.................................................................................................1911.00110000000000000000
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................2311.00100000000000100000
...............................................................................................................................CAAATTGACTCTAGTAGGGAC..................................................................................................2111.00110000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................2311.00101000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAGT..........................................................2411.00100000000000100000
................................................................................................................................AAATTGACTCTAGTAGGTC...................................................................................................1911.00110000000000000000
.....................................................................................................................................GACTCTAGTAGGGAGT.................................................................................................1611.00100000000001000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................2211.00100000100000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGA.................................................................................................2011.00110000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAAG.................................................................................................2111.00110000000000000000
............................................................................G-----------------------------CAACC-AGTCCTGGTGAAGC........................................................................................................................2011.00100000100000000000
......................................................................................................................................ACTCTAGTAGGGAGT.................................................................................................1511.00100000000001000000
................................................................................................................................AAATTGACTCTAGTAGGGATG.................................................................................................2111.00110000000000000000
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................1811.00110000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................2211.00100000010000000000
.................................................................................................................................AATTGACTCTAGTAGGGG...................................................................................................1811.00101000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGT............................................................2111.00110000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................2111.00100000000000100000
......................................................................................................................................................................CCCTAACGGAGTCAGATTGAGC..........................................................2211.00100100000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2211.00110000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGC.................................................................................................2011.00110000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG...........................................................2311.00100000000000100000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC..............................................................................................2411.00100000000000001000
............................................................................G-----------------------------CAACC-AGTCCTGGTGAAGCTC......................................................................................................................2211.00110000000000000000
...................................................................................................................................TTGACTCTAGTAGGGAGG.................................................................................................1811.00110000000000000000
dm3
ATCCATGTATGCA-ATC---------------------CATGCCCTG-A-------------------CATGG--CG-----------------------------GAACC-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA---------CTTAAA---AATGTGTTAGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................211991581.0099158100001000000000120400541800100322218867854765226190366626129591144813984182430831216000110000000000000000001020410000010018103316002274000000000000313412421125234341166112101500000010007914293813934503952360042343214000001845110294317110249465249406809767598110276233391164157128128211759157472900100527622000002483100340073120442102646109411751611694911033003010044435914716613524131327340525901194416293816247881922421871059547778841721830181112802811075959722371441693371036284827723772743125132028924296182542842541923835660532113738971304851274101405416952184618410136920671031472212548150863631728866556451088914266177153616532694112555556616351374852962724842979174126706021800
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................221142586.0014258600005000000100300220661000321586312941258143813701627131525121621611277947371012000000000000000000000001102950010000004124036001081921200001110300112210350372313752029000000000050820021321183615153610181240000080005088295805631599740116703251371333821155643723200011122228151710038054500000354800200187470348408404142083002182000111400192614854215143156114482936311545359688091822198891602402444156884521750464342411165523158442481312252017255351461328079494510648120672831081488855850185651853916661676258661467046059246149729516039856147321602163101129532560121899252075139812933911689103200
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................21143028.004302800007320001023030023000130113618195394476401000000101000011110003712130000000000000000032101012000000431817901759221411012141376101560374547424248161701110222371258340000001000201000000011000000000005000406366017712734252622583212001041529000001163100000010000000000000000002382000100105000000004842016620075954526426171202382160284791227424512124858442021616294732107062402150835618848421192209815011033451533021132401319163282651310613201105407149634032400
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................20125804.002580400002000000000011010110103017361061381759511301051301314112300000000000000000000000000001200000000015011308000083100000001010062073121501652502322016000000000011100224151950402000002000004362168028644201762171281543931524054141000005283614000002102200000007001000600418514399032171101720030000342012617996921183151861532051951771020201260411294111712717837315326981061148118910321631178377225024211261118492329609127884641021472107863155103780741421290921951931734860210820
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19116051.00160510000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000000000000000157040000010000000000000000001010020000100000000000317301337310135009231360110000030000000000000000000000000001213000000010000000001114610103196015110000090010000000000000000000009012962334437150093012000118240780000315035227253311068911850307978810514013019000
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................20114181.0014181000001000000000100000000052703218121000000000021010010000000010000000000000000000000000000000000030000000000000000000002603010000000000000000020000110003410010000010000072606278716361838116000011192221000103000000000000008135212910000100010000000031544054711413901558121448114212531101117128052021220180532134857307343367486123412903315271078015418897481914162067731382893342420061052557474771333473142534531871240
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................22113456.001345600001810003032000011000000101622335451510000000210000001200000000000000000000000006524300002001212105351410518664369994424015003214142113706264290672811984920617100000000003010001000200000000000000003112245402083419356825366810121853000003130010000000000000000000000011295100120002000000002245000301073546012420200265131001002030012000000000014031524595803511300000061310000000101010000001722110000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22112165.0012165000020000000000600000000040186585861683142201100010001011100000000000000000000000000000001000000000020160100202310030000000001310702411001410000000000100000000015000000000000100826009141220119966717711874070000061010000001000000000020000200912001200030000000081052521004102023580112132111210001001010000000000127410256219314344016291609010011154524251000045121098636151177034056383679518618320129541500
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................23111505.00115050000000001000000000000600600000000012100413062210132000000000000000000000000000000000000000001310000019000000000000006810003150192192000000000003120002504141000000000000080531428031822470462193176371567720000001300001000020530000005000000000111331160043000100013300100922341487000931960691001118916000010051740002300211036003015196115179656145144501224513195214922103114140101010213107811889829694250004010
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2319059.0090590000000000000000000002200000000000022212127170001242000000000000000000000000000010000000001300502100035000000010000002900001110801012000000000050300252261380000000000000003082520203302772364116226124726006007375130000504000000530000001005134158004140004000000002162090109340003585127600005721000000031110100328112116313001109386513344583849518172031417210260418120003382104222126141011098811130885358208000
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................2115210.0052100000000000000000000000000100000000000000103000201010000000000000000000000000000000000000000000000000000000000000000000010101000020000000000010000001040000000000000007100400180601615170000002300000000020000000000000000001730001000000000000000238331315550141030410431400000006140000350010000063730905127911431270142111096002212716290166400100306128211043290445131610001000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................2214885.004885000050000100003102100000001014104770000010100000000000000000110000000000000000000001500000001112601152160365121000001015170234114290371152240927490000000000100000000010000000000000001071030841098854113198019324000002261020000000000000000003001003730000023070000000094420126505010644503013010115890110001103000001030000002617250374246281312910166000011106589149330150915303302810213243620391916100300
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................1913675.003675000000000000000000000000010721296193600000000011000101000000000000000000000000000000000000000000000110001200000001000001910103210012100000000000000000000173002000000000002215703091012822337252677442800000434101000001030000000000100000015103000110010000000014703190300842017250000931110000013510000130010100591715312616121601722165250112598838062164190701916201187481163149304515021000
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................2113049.00304900000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000120200100000000000000000000001000900000000000000059022124030207000000200001000000000000000000000101623000000000000000012001061007340937001027210100100103010021204140200324101681911711470713803623411363215113691033212128042111230133859143467873562030000
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................2112784.00278400000000000000010000001002171224356200010001013130003011000000000000000000000000100000000100000003010000000030000000000611000000001300000000000000202211180002000000000002765019209196726491151540005005021100001000000000100000031223330002000000000000241710100553102004470200145330020001832601001322011300895297712681162183361217000028268796102329140802381031471444030364277321711308100
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................1912377.00237700000000000000010000000000320000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000200000000000000012013207122000200000020010000100000000000000001001151000000000000000053000110040009001051200000002010000000000000144197456781440107501000021844631331360182226319270353066112961113331430014000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................2112103.00210300001000000000000020000000001041300000000000000000000000003500000000000000000000001000000000240210010010310000000000008238906010423113420250000000000000000001030000000000000005980055004434047154112211000001250000000000000000000000000000200000000010000000044046231022739097000080610000000000000010100000040014416514718109105000000290141200010000300002004154121627002000
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................1811822.001822000000000000000000000000000611511001000100000100000000000000000000000000000000000000000000000000100000000000000000000215901100100101000000000000000001000100000000000000028167016108610152137606290000011102000000000000000000000000014200010000000000006203241000214021300011910110000101000000000000170615910815618901436240200000242405441001000802000001528542951216102000
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................2211419.0014190000000000000000000000000000000000000000001020000210000000000000000000000000000000000000000000000000060000000000000030000000030030000000000000001000016000000000000000311860101122193901584210000066201000010000000011000000000034700000001000000009406910003150111400008120000000701301001600040210704595038630613201300103116257101210016015021059236424141618002000
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................2111397.0013970000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000001020000000010000000000000000000060000000000000003540201192201590000006001000010000000000000000000021000010000000040001000400002110248000012200000203050000240001000021331221611613001103025002066995105120011000221404002723826613911106000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................2311168.00116800000000000000001000000000000000000000000000210001100000001000000000000000000000000000000000000010000010000000000000700001000200100000000001010012210220000000000060104405004141130605000000234010000002000000030000000020162116000000010000000030330218000211705100000327200010050500000303100411120460605275073301301105154274719290140603011415001912716617317006100
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................2011009.00100900000000000000000000000000010014121200000000000000000000001020000000000000000000000000000000000050200002000000001000005101083405112000000000000000000003000000000000000670401151401701411830000037000000000000000000000000000000000000000000000002102240002649052000011100000000010000000000000020096881181340235030000908120000000030000000518560325000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................231960.00960000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000003000000000000000151820100031803012015000000163020000200000000000000000000051001200000000000020003000001201200002100000000010000000012010000127181535033204010014110220001100020020100872814517111516000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231942.009420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000020010000000000000000010140002000000000002518013004516190250500000008202000000000000000000000000001330000000000000000960111000071003000001000000000000000000000000000004164437801720100401012801421001301000000000011187112854000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................201729.00729000010000000000000000000000100000000000000000000000000000000000000000000000000001000000000000230000001000100000000012790905230711511000000000000000000000000000000000000105147033126261150511107000000330000000000000000000000000000000000000000000000010013000000002000000000000000100000000000000000151128290000010000102000000000000000000500001000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................221599.0059900000000000000000000000100000000000000000000100001100000000000000000000000000000000000000000000000000000000000000000100001000404100000000000000000010400010000000000011660902353921110022600000140000000100000000000000000000210000000000000300066014000113021000050001000020310001000000000102202722270350030000154252100011000200003001680531440002000
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................231595.00595000000000000000000000000000002510100000000000000000000000000000000000000000001000000000000000000000000000000000000000102000100000000000000000000000011000000000000000100130413500200000003000000000000000000000000000000000000000000000002100100012400200101311000000000100000000000005012514142303220200005312213000030181501232014267249181211001000
...............................................................................................................................CAAATTGACTCTAGTAGGGAG..................................................................................................211469.00469000010000000000000000000000321612110000000000001000000000000000000000000000000000300000000000010000000000000000000000400000110000000000000000000000000000000000000000081040410313191211426300000200000000000000000000000000000000000000000000000210020000130200000010000000101000000000000003022016182602100000003146010000001000010027931233000000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................201459.0045900000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000020000000000010100000000000000000000000000000300000000000000013260211141341404260000004221000000000000000000000000401030000000000010000302100610000001400001310000000609010100000000008031433302602235000000101414000010003000000021733000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG...........................................................231436.00436000020000100000000000000000000000000000000000000000000000000000000000000000000001000000000040060110331800100100100000010000020105200000000000000000000200000000000000097010005130100401700000028000000000000000000000000000010000000101000000008401600015502300108400000000000000010000000010021453240018450101007177020000206000010011710212000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................231416.004160000100001000000000000000000000000000000000000000000000000000000000000000000000010000000000500601000025000000002010001840201220211280000000000000000000000000000000000008264042007160162702800000030000000000000000000000000000000000100002000000003000100002201000000000010000000000000000000010032240000010000000000000000000000000000000001000
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................181393.003930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104010000000000000000000000000000000000000000000003240542025001227000000000010000000000000000000000000001000000000000100000011000000220020000000000000000000000000000000002626425900200100001024000000000000000039140002002000
................................................................................................................................AAATTGACTCTAGTAGGGAGTATC..............................................................................................241327.003270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191136000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................201272.0027200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000100000000000000051280220001010210000000000000000000000000000000000000000000000000011000001101101300100001400000000010000000000000000011353002310300001003000000001000000033431021001000
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................191271.0027100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300101010001000000000000000000000000000000000000054401001051101260000006000000000000000000000000000001000000000000000000001200000201600000600000003020000000002000040857122001120100003467110000101021010024761332011000
.......................................................................................................................................................................CCTAACGGAGTCAGATTGAG...........................................................201250.002500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000002103001202010000000040000000000000000000000000000000000000000000000016600100001300000008100000000000000000000000000135372925015940000000137000000102001032001312401000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................221238.0023800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000300000000000000971000100010676000000000000000000000000000000000000481703100000000010000001000000000000000000000000000000000000000000000001000000000200000001100000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................221232.0023200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004030002600000000000000120001000031520000000000000000000000000000000000002925020004502061132000001000000000000000000000000000000000001000000000000100010002010000000020000000000000000000000004006451302100100011201000000102100040001211000000000
...............................................................................................................................CAAATTGACTCTAGTAGGG....................................................................................................191222.00222000000000000000000000000000325000100000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000446025401602222120000000000000000000000000000000000000000000010000000010000000001010000010000000000000000000000000000637800100000000010100000000000010036365002000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................231212.00212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000000000000000000000000000000000535030023040206000000700000000000000000000000000000000000000000000000100021000040120000000000000000000000000100000008455000000000030650100000000010000863131312000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................231198.001980000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000001000000000000000000000000000000000000000003202310722032100000000000000000000000010000000000010000000000000000043001000113011000002000000000000000000000000300581110014410001003165110101008001030044621120002000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAGT..........................................................231186.001860000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000001000104000100000000000000000000000000000000000000002000001000100000030000000000000000000000001010000000000000000000011013110220003000010000200000000000000000000070056320111001000127801000030220100150013721212011100
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................201156.0015600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037702001110001400000020000000000000000000000000000110000000000000000000000000001010000000000000010000000000000000003824400000100003121100000000000000032400101000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................221155.001550000000000000000000000000000000000000000100000002100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000003140300012151446000000000000000000000000000000000000000000000000000000210110001040100000510000000003000010000000001005466001101001041161500010000200000000620101000000
................................................................................................................................AAATTGACTCTAGTAGGGC...................................................................................................191150.00150000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000003200000000010000000000000000000000000000000000000310120000004200000002000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000011451100110100001010000000000010000048300001000000
................................................................................................................................AAATTGACTCTAGTAGGAGT..................................................................................................204139.505580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100220452200300000010000000000000000000000000000421000000000000000000002000002012000122000000000000000000000000200142011240010010000013100000140121251300352603913202214007000
...............................................................................................................................CAAATTGACTCTAGTAGGGA...................................................................................................201139.00139000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000321016500110046020000000000000000000000000000000000000000000000000000000000000000010010000000100000000000000000000001203600010000000020000000000011102043761202000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................211134.001340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000010000000000000000000000030430000000000000000000000000000000000005001001000010000000030000000000000000000000000000000000000000000000000075100031101000002600000000000000100000000010011810350100000000103000000000000000000300000000000
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................191129.0012900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000100215000000000000000000000000000000000000010000000000000000000000000005001000000000000000000000000000000000171117500010000000041000000000000000024000001001000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................231120.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004180301330409017100000111000000000000000000000000000000000000000000120020002000001000000000000000000000000000000000000331301000010002000000000000000000021430121000000
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................181119.001190000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000030000000000000001000110212100000000030001000000000000000000000000010000000000000000000000000000002100010000000000000001100000000000532600100100000140000000100003010053755643000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................221119.001190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001010030078016040500000029000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004360000010000002210000000000100000500000000000
...............................................................................................................................CAAATTGACTCTAGTAGG.....................................................................................................18196.009600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000000004604000000021020000000000000000000000000000000000000000000000000000000000000002010000001000000000000000000000000000397100000000000001000000000000000000210000000000
................................................................................................................................AAATTGACTCTAGTAGGGGT..................................................................................................20191.00910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000113600000000000001000000000001000007000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................23189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000540000411040602100000012000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000031210000000000200000000000000000001600100000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................22189.00890000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000020000000000000004903007305050400000017000000000000000000000000000002000000000000000000200000000000000000000000000010000100001000000000330101000000101101000000001002000300020001000
droEug1
TGATCTATAAA---ATA-----------AGTCCT-----GT-ATCTG-A-------------------TATAGATGA-----------------------------TAACA-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--------TTCTTA---AAAGTGTTATCSizeHit CountTotal NormTotal
No Reads
droBia1
TACCCAAG-TTC---------------------CTAT-TGTCCTTTG-A-------------------CATAA--CA-----------------------------GAACTAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--------CTGCCA---AAAGTGTTAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TGCCTTACATACC---------------------TAT-TGTTCCCTG-A-------------------CATAA--GA-----------------------------GAACCAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--------CTTTAA---AAAGTGTTAGCSizeHit CountTotal NormTotal
No Reads
droEle1
GGGTACTCCG-----AA---------------------AGAACCGTG-G-------------------AGC----GA-----------------------------GAAGGACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGGG-GAGCAG--------CTGCCG---AAAGTGTTAGCSizeHit CountTotal NormTotal
No Reads
droRho1
AGTCTTACAT-----TA---------------------CGC----------------------------------GA-----------------------------AAACGACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAAG-GAGCAG--------CTGCCA---AAAGTGTTAGCSizeHit CountTotal NormTotal
No Reads
droFic1
ACG-------------------------------------CG--CCG-A-------------------CTTTG---A-----------------------------GAACGACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--------CTGCC-----AAGTGCTAGCSizeHit CountTotal NormTotal
No Reads
droKik1
CCCA-AATC------------------------------------GA-GAGTG--ACCCGAGCAACGCCAT-----------------------------------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG--A--------TTCCAG---AGAGTGTTAGGSizeHit CountTotal NormTotal
No Reads
droAna3
TGTCCTGAA-------A---------------------AGTGTTCTG-A-------------------GATGC--AGCTTCCCCAGCCACCAACCAACCAACCAACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTG------GCCTAA---AAAGTGTTAGCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21148433.0048433611081034399564938113
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22114519.00145195518048443511148687
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2115341.005341362121684463246
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2313204.00320414328361082241
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311174.001174817437391681
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201963.009631750403162376
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201830.0083030060119648
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231604.00604110117759356
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221593.005933100518242
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................191366.003660002572269
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................211340.003400001865257
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................191315.003151001310291
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................231297.002976019936155
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191252.002524028359104
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................231245.002454008824129
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181220.002201110107299
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211191.0019102002632113
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................181155.0015500059195
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211155.0015553085359
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................221117.00117000491355
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................23184.0084011122644
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20183.0083380012033
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21180.0080000232037
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................23173.0073100271530
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21163.006383016036
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22150.005001017131
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................21148.00480003144
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20143.004316002205
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22128.002811121211
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20121.00210001614
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................23115.00150005010
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................22114.0014000716
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19114.0014000806
................................................................................................................................AAATTGACTCTAGTAGGGAGTGT...............................................................................................23113.0013000931
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................20113.0013000526
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................23112.0012100317
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTC.............................................................21111.0011000407
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23110.0010030115
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTA.............................................................2119.009000009
.................................................................................................................................AATTGACTCTAGTAGGGA...................................................................................................1818.008300401
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................2318.008210302
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................1818.008000206
................................................................................................................................AAATTGACTCTAGTAGG.....................................................................................................1718.008000800
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2017.007100510
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2317.007000403
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................1917.007000007
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................1816.006000015
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................2216.006100104
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................2216.006000600
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2216.006110112
................................................................................................................................AAATTGACTCTAGTAGGGAGTGA...............................................................................................2316.006100302
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2216.006100302
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................2115.005000401
...............................................................................................................................CAAATTGACTCTAGTAGGG....................................................................................................1915.005100112
................................................................................................................................AAATTGACTCTAGTAGGTT...................................................................................................1915.005000203
................................................................................................................................AAATTGACTCTAGTAGGAGT..................................................................................................20104.00400003235
droBip1
AGTGAGAAAA------------------TGTCCTGAAAAGGGTACTG-A-------------------GATGC--GGCCTTCC-------------ACCAACCCACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTT------GCCCAA---AAAGTGTTAGCSizeHit CountTotal NormTotal
No Reads
dp5
GTGCATGCGCCCG-AT----------------------------CCG-AAGTG----------------------CA-----------------------------CGG-CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGA----CAAAGAACCGAAGTG-TAGTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................2117708.0077081231179704887436313240217
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................2216817.00681704234207144914467290417
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2112256.002256145612116168576000
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201968.0096808510731071764126
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................231846.0084607350604658032005
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................231785.0078501004231660137004
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221739.0073904126146731002
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211216.0021604532221431000
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211197.0019701611095174000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231119.001190532172585000
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201114.0011402521244922000
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................19182.00820131364710011
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20169.0069043000260000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21154.005409026351001
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19132.003207131191000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20130.003001128090000
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21127.002700366120000
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................18126.002602120200001
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23126.002601713140000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22123.002302114060000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................23123.002302001182000
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22121.002102021160000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23117.00170222092000
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19117.001703111011000
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22116.00160242080000
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21115.001500000150000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................22113.001301000030000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20112.001201101000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................23111.00110501140000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................22110.00100200080000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2219.0090700020000
..................................................................................................................................ATTGACTCTAGTAGGGAGTCC...............................................................................................2117.0070011050000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................2316.0060102030000
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................1916.0060000051000
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1815.0050101030000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2215.0050000230000
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................2014.0040000040000
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................1814.0040000040000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................2214.0040000031000
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2014.0040001030000
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................1814.0040002011000
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGTC................................................................................................2414.0040002020000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................2214.0040000040000
...............................................................................................................................CAAATTGACTCTAGTAGGGAG..................................................................................................2113.0030100020000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTCT...............................................................................................2413.0030002010000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCCT..............................................................................................2413.0030001011000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA...........................................................2213.0030000111000
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................1913.0030000030000
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................1913.0030012000000
.................................................................................................................................AATTGACTCTAGTAGGGA...................................................................................................1813.0030000030000
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................1813.0030000030000
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................1912.0020200000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................2312.0020100010000
................................................................................................................................AAATTGACTCTAGTAGGGAC..................................................................................................2012.0020002000000
................................................................................................................................AAATTGACTCTAGTAGGTT...................................................................................................1922.0040000040000
................................................................................................................................AAATTGACTCTAGTAGGGATC.................................................................................................2112.0020002000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGC.................................................................................................2212.0020011000000
......................................................................................................................................................................CCCTAACGGAGTCAGATTG.............................................................1912.0020200000000
droPer2
CGCCCGATC------------------------------------CG-AAGTG---CA-----------------CG-----------------------------G---GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAA------------------AAGACAAAGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21118343.0018343553216391365247632
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22114511.001451156454414590201223
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2113906.00390607541277250941
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311722.00172201194781053171
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2311689.0016890811478112567
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................2011010.0010101111312508177
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221487.0048701513241470
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211220.00220070711375
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231196.001960104512426
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................201179.0017902051711
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191114.00114036195333
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201112.00112061285027
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................21167.00670008509
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22147.004700092810
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19146.004600023410
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21143.004320019220
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20142.004209014190
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21137.00371006300
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................23135.00350203264
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21132.00320005225
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22131.00310019201
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23127.002701051110
..................................................................................................................................ATTGACTCTAGTAGGGAGTCC...............................................................................................21120.00200007130
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................18120.00201007120
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22116.0016020446
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20115.00150202110
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................23111.0011000092
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19111.0011000344
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2219.009000450
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................1919.009110250
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2219.009000270
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................1818.008100160
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................2118.008000170
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................2217.007000070
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2315.005000140
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC..............................................................................................2415.005000140
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2215.005010211
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2015.005010022
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................2315.005000050
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................2314.004000121
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTC.............................................................2114.004000130
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................2114.004000130
................................................................................................................................AAATTGACTCTAGTAGGGAGAA................................................................................................2213.003000120
droWil2
AGCATAATC------------------------------------TA-AAGTG--GCTT----------------GA-----------------------------GA---ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA--------CGACCCACCAAAGTGTTAGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21197883.00978834871623418839285424
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22118888.0018888139161614764510329
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2112505.002505931529892162
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311953.001953655547811057
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2311464.001464227472481140
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201843.00843214247248485
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201452.004522171150372
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231365.003655262136277
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211207.00207192614166
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................211191.00191224023142
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231184.00184221057113
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................221145.0014503712123
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................191128.0012821515105
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................22188.008851902935
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................19186.008635211443
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................21183.008321202346
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21177.0077000275
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21168.00682703335
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22166.00660001254
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................20161.00612210335
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGT.................................................................................................23160.00601001346
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19147.00470011432
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22132.0032013325
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23127.0027015417
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAA...........................................................22122.0022220810
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20118.001841067
................................................................................................................................AAATTGACTCTAGTAGGGAC..................................................................................................20116.0016160000
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................18116.0016110113
.......................................................................................................................................................................CCTAACGGAGTCAGATTGA............................................................19115.0015101112
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20115.001565004
........................................................................................................................................................................CTAACGGAGTCAGATTGA............................................................18113.001350017
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................23112.001231026
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................19111.0011101000
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................18110.001002125
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................2319.00901008
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA..............................................................................................2419.00900054
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................2318.00802006
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................2317.00740003
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2217.00702032
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................2316.00630102
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................2315.00500023
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................2215.00501013
................................................................................................................................AAATTGACTCTAGTAGGGAGTAT...............................................................................................2315.00500005
.................................................................................................................................AATTGACTCTAGTAGGGAGTCG...............................................................................................2214.00403001
................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA..............................................................................................2414.00402011
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2214.00421001
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1814.00430010
................................................................................................................................AAATTGACTCTAGTAGGGAGTGT...............................................................................................2314.00421001
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................1814.00400004
......................................................................................................................................................................CCCTAACGGAGTCAGATTGA............................................................2014.00401003
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................2214.00402002
..................................................................................................................................ATTGACTCTAGTAGGGAGTCA...............................................................................................2113.00301002
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................2013.00300111
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA..........................................................2313.00310011
..........................................................T----------------GA-----------------------------GA---ACTTCCTGCGGCAGTTC......................................................................................................................2213.00320010
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAT..........................................................2313.00330000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2213.00300111
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGG............................................................2112.00220000
....................................................................................................................................................................CTCCCTAACGGAGTCAGA................................................................1812.00202000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAAC..........................................................2412.00220000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATT..............................................................1912.00210001
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTA.............................................................2112.00200002
droVir3
CCAGGCC-----------------------------------------AAGTGCGACGC----------------G------------------------------T---GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAG-----------------TAAA---AATGTGCCAAGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21121160.0021160812426013739076391617227001931518321757637308248161002702325485216208600002120001000000000000108956380845209000000135141000001
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22113334.00133342353731750486391036110001481759423859473423149851278931255359104703800016830000000000100000003187487651600000003100000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2117094.0070945303793020000000052231714733057424648117671001156180100010200000000000000000001828694200000001000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2313781.003781027715317001410005682891813301972431482661612521224112010000073000000000000000000001053344001000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................2311766.001766007030411100000192134751708676017924100113551200000004000000000000000000074772700000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................2011607.001607915178413020700009561336974450566521111811270200001600000000000000000111693101003000110000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221486.0048603431000000000035236297333058320000030110000000000000000000000000000145000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231418.00418004601940030000392614282521843470001110133100800001210000000000000000000351900000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231355.003550070003001000035281533302302569000001010010000020000000000000000000176400000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................201308.00308043111101302000050436205600000200200000004000000000000000000049811300100000000000000
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................181243.0024324527000000000009444530430000000000100000100000000000000000201126200000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191225.002250782000000000095354416800000000000000001000000000000000000051183900000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211168.00168024930003030000867125701320000000200000000060000000000000000000213700000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................221115.0011500400011010000126213740917000000000010000000000000000000000000029800000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................201109.00109033900000000000151154087000000000000000000000000000000000000034100000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211108.001080100180002010000010010000000000000010000010000000000000000000166600000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................231107.0010700120000000000015449770711000000000000000000000000000000000000027400000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19191.0091012000041100000021200020000000000000000100000000000000000000522200000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21182.0082023000000100003405200260000000000000000000000000000000000001381500000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................21170.0070022000010000006415530106000001200000000000000000000000000000119100000001000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21162.0062418000001010000000000000000000000000000000000000000000000000134300000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19152.005203800107020000020010102000000100000000010000000000000000000014900000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20148.0048011240000000000000022004300000000100000000000000000000000000001000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAG..................................................................................................21138.003804200000000000610242031000000000010000000000000000000000000010100000000100000000
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................20136.003614200000000000100311030000000000000000000000000000000000000016400000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22134.003400200000000000230210030000000000000000000000000000000000010111800000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................23132.003200210000000000231102032000000000000000000000000000000000000013200000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20132.003205113000000000011370100000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22131.00310011000000000073210300300000010000000000000000000000000000005400000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................22121.00210000000100000011012103600000000000000000000000000000000000003200000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA..............................................................................................24120.00200010000000000001133203300000000000000000000000000000000000002100000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................22120.00200040000000000021011002400010000001000000000000000000000000003000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGG....................................................................................................19120.00200410000000000020010100000000000000000000000000000000000000007300000001000000000
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................18218.5037014000000000000112001002000000000000000000000000000000000000016000000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................22118.00180000030000000000000001300000130001000002000000000000000000002200000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................23118.00180310010000000010110001300000000000000000000000000000000000005100000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAC..................................................................................................20116.00163900000000000000000000000000000000000000000000000000000000004000000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................19115.00150050000000000020000001000000000000000000000000000000000000007000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................23114.00140060000000000011010100100000000000000000000000000000000000003000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTG..............................................................................................24113.00130010000000000010021101100000000000000000000000000000000000004100000000000000000
.......................................................................................................................................................................CCTAACGGAGTCAGATTG.............................................................18113.00130010000000000003011002200000000000000000000000000000000000003000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGG.....................................................................................................18111.00110610000000000000000000200000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................23111.00110000000000000033010001200000000000000000000000000000000000001000000000000000000
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................22110.00100060000000000000100001100000000000000000000000000000000000001000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................2119.0090000000000000010001101100000000000000000000000000000000000013000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................2019.0090100000000000020001000100000000000000000000000000000000000003100000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................2319.0090011000000000020000101000000000000000000000000000000000000003000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGA....................................................................................................1818.0080320000000000000000000100000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTA.............................................................2118.0080000000000000001000001000000000000000000000000000000000000006000000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGTCC...............................................................................................2117.0070000000100000000100101300000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................2217.0070100000000000000011002000000000000000000000000000000000000001100000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................2217.0070001000000000000101001000000000000000000000000000000000000003000000000000000000
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................1917.0070121000000000000000001000000000000000000000000000000000000002000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................1917.0071110000000000010000000000000000000000000000000000000000000001000000002000000000
................................................................................................................................AAATTGACTCTAGTAGGGAAA.................................................................................................2117.0070200000000000000000101100000000000000000000000000000000000002000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCAA..............................................................................................2416.0060001000000000020010100100000000000000000000000000000000000000000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTCT...............................................................................................2416.0060020000000000000110001000000000000000000000000000000000000001000000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................2116.0060000000000000010300000000000000001000001000000000000000000000000000000000000000
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTC.............................................................2116.0060000000000000002000000000000000000000000000000000000000000004000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTGT...............................................................................................2316.0060000000000000000100000300000000000000000000000000000000000002000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGC....................................................................................................1816.0060400000000000000000000000000000000000001000000000000000000001000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCCT..............................................................................................2415.0050000000000000020000001100000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCCTAACGGAGTCAGATT..............................................................1915.0050130000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGA...................................................................................................2015.0050000000000000001011000000000000000000000000000000000000000002000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGG...................................................................................................1915.0050100000000000000000000000000000000000000000000000000000000003100000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCCA..............................................................................................2415.0050000000000000000001200100000010000000000000000000000000000000000000000000000000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTTT...............................................................................................2415.0050110000000000001110000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATTGACTCTAGTAGGGAG..................................................................................................1815.0050040000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTC..............................................................................................2414.0040000000000000000000100000000010101000000000000000000000000000000000000000000000
................................................................................................................................AAATTGACTCTAGTAGGGAGTAA...............................................................................................2314.0040000000000000001101100000000000000000000000000000000000000000000000000000000000
droMoj3
AGATATATATATATATACATACATACAT--------A-TA-----C------GCT--------------------AC-----------------------------G---AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGCGAGCACAAATGCAA---ATAATGGTATASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................21117995.0017995242347425877363495063
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................22112606.0012606350227322964771483840
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................2117028.007028425528013708089
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................2311765.001765999453979124101
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201755.0075564119636919106
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................231515.00515242172293717
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................231252.002527461779211
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................221238.0023821037751293
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................221190.00190463478671
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................211141.00141134536731
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................231120.0012091346907
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................211116.00116011722715
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................201112.00112420333502
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................211109.001094121132221
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................191104.001041113039023
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................20189.00891501540217
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................20163.0063701027190
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................20156.0056200151902
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................23156.005640182815
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19146.004660121837
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................23145.00452135331
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................22143.004301142314
................................................................................................................................AAATTGACTCTAGTAGGGAGG.................................................................................................21139.003901112412
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................18132.00326091520
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGT............................................................22126.00261091411
................................................................................................................................AAATTGACTCTAGTAGGGAGTTA...............................................................................................23124.00240051513
...................................................................................................................................................................ACTCCCTAACGGAGTCAGATTGA............................................................23124.00241301820
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................19124.00240031308
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................22123.00230051440
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTT.............................................................21119.00190015400
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................21118.0018105912
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................21114.0014007610
...................................................................................................................................................................ACTCCCTAACGGAGTCAGATTG.............................................................22114.0014903200
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................19112.0012203070
.................................................................................................................................AATTGACTCTAGTAGGGAGTCC...............................................................................................22112.0012301620
................................................................................................................................AAATTGACTCTAGTAGGGAGTTG...............................................................................................23112.0012105600
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................22112.0012800310
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAA...........................................................23111.0011502310
..................................................................................................................................ATTGACTCTAGTAGGGAGTCC...............................................................................................21111.0011006401
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTA.............................................................21110.0010006400
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAT...........................................................23110.0010004600
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................1919.009601200
................................................................................................................................AAATTGACTCTAGTAGGT....................................................................................................1817.007004300
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................1816.006101112
................................................................................................................................AAATTGACTCTAGTAGGGAT..................................................................................................2016.006002301
................................................................................................................................AAATTGACTCTAGTAGGGAGTCTA..............................................................................................2416.006101400
................................................................................................................................AAATTGACTCTAGTAGGGAGTG................................................................................................2215.005010310
................................................................................................................................AAATTGACTCTAGTAGGGAGTGT...............................................................................................2315.005005000
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTCT...............................................................................................2415.005101030
....................................................................................................................................................................CTCCCTAACGGAGTCAGAT...............................................................1915.005100130
.....................................................................................................................................................................TCCCTAACGGAGTCAGATT..............................................................1914.004002200
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2014.004101101
................................................................................................................................AAATTGACTCTAGTAGGGAGGA................................................................................................2214.004001120
......................................................................................................................................................................CCCTAACGGAGTCAGATTG.............................................................1914.004201100
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTC.............................................................2114.004100300
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................2214.004301000
droGri2
CAATGTCC-------------------------TCAA-TGTTATTTGAAAGTGTGC---------------CC--CC-----------------------------GA---ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA---------GTGATA---CAAGTGTTACASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................AAATTGACTCTAGTAGGGAGT.................................................................................................2113522.0035222163306
................................................................................................................................AAATTGACTCTAGTAGGGAGTC................................................................................................221739.00739264475
................................................................................................................................AAATTGACTCTAGTAGGGAG..................................................................................................201108.001085058
................................................................................................................................AAATTGACTCTAGTAGGGAGTCT...............................................................................................23169.00693633
.................................................................................................................................AATTGACTCTAGTAGGGAGT.................................................................................................20163.00632043
.................................................................................................................................AATTGACTCTAGTAGGGAGTC................................................................................................21137.0037334
................................................................................................................................AAATTGACTCTAGTAGGGA...................................................................................................19119.0019415
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTG.............................................................21119.0019163
................................................................................................................................AAATTGACTCTAGTAGGGAGTCC...............................................................................................23119.0019127
................................................................................................................................AAATTGACTCTAGTAGGGAGTCA...............................................................................................23116.001697
...............................................................................................................................CAAATTGACTCTAGTAGGGAGT.................................................................................................22115.0015114
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGA............................................................22112.0012111
..................................................................................................................................ATTGACTCTAGTAGGGAGT.................................................................................................19110.001037
................................................................................................................................AAATTGACTCTAGTAGGGAGTT................................................................................................2218.00817
.................................................................................................................................AATTGACTCTAGTAGGGAG..................................................................................................1917.00743
................................................................................................................................AAATTGACTCTAGTAGGGAGTTT...............................................................................................2315.00532
................................................................................................................................AAATTGACTCTAGTAGGGT...................................................................................................1914.00413
................................................................................................................................AAATTGACTCTAGTAGGGAGC.................................................................................................2114.00404
................................................................................................................................AAATTGACTCTAGTAGGG....................................................................................................1813.00330
..................................................................................................................................ATTGACTCTAGTAGGGAGTC................................................................................................2013.00321
...............................................................................................................................CAAATTGACTCTAGTAGGGAGTC................................................................................................2313.00321
....................................................................................................................................................................CTCCCTAACGGAGTCAGATT..............................................................2012.00220
...................................................................................................................................TTGACTCTAGTAGGGAGTC................................................................................................1912.00211
................................................................................................................................AAATTGACTCTAGTAGGGAGTA................................................................................................2212.00211
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTG.............................................................2012.00211
................................................................................................................................AAATTGACTCTAGTAGGGAGTCG...............................................................................................2312.00220
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGA............................................................2112.00211
................................................................................................................................AAATTGACTCTAGTAGGGAA..................................................................................................2012.00202
...................................................................................................................................TTGACTCTAGTAGGGAGT.................................................................................................1812.00211
................................................................................................................................AAATTGACTCTAGTAGGGAGA.................................................................................................2111.00101
.................................................................................................................................AATTGACTCTAGTAGGGAGTCCT..............................................................................................2311.00110
..............................................................................................................................TCAAATTGACTCTAGTAGGGAGTC................................................................................................2411.00101
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGC............................................................2211.00110
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAAA..........................................................2311.00110
....................................................................................................................................................................CTCCCTAACGGAGTCAGA................................................................1811.00110
................................................................................................................................AAATTGACTCTAGTAGGGAGTCCA..............................................................................................2411.00110
..................................................................................................................................ATTGACTCTAGTAGGGAGTCT...............................................................................................2111.00110
.....................................................................................................................................................................TCCCTAACGGAGTCAGATTGAG...........................................................2211.00101
...................................................................................................................................TTGACTCTAGTAGGGAGTCT...............................................................................................2011.00110
.................................................................................................................................AATTGACTCTAGTAGGGAGTCA...............................................................................................2211.00110
....................................................................................................................................................................CTCCCTAACGGAGTCAGATTGAG...........................................................2311.00101
...............................................................................................................................CAAATTGACTCTAGTAGGGA...................................................................................................2011.00110
..................................CAA-TGTTATTTGAAAGTGTGC---------------...............................................................................................................................................................................2111.00110
.................................................................................................................................AATTGACTCTAGTAGGGAGTCT...............................................................................................2211.00110

Generated: 10/20/2015 at 07:37 PM